Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115020 | XP_003625149.1 | 95.699 | 279 | 12 | 0 | 1 | 279 | 1 | 279 | 5.42e-165 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115020 | sp|P93758|RMR42_ARATH | 53.901 | 282 | 96 | 7 | 9 | 279 | 13 | 271 | 1.38e-86 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115020 | A2Q3K8 | 95.699 | 279 | 12 | 0 | 1 | 279 | 1 | 279 | 2.59e-165 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa1115020 | 0.802738 | 4.866231e-49 | -8.615850e-47 |
| Msa0094230 | Msa1115020 | 0.811419 | 7.067256e-51 | -8.615850e-47 |
| Msa0096450 | Msa1115020 | 0.830568 | 2.729809e-55 | -8.615850e-47 |
| Msa0102120 | Msa1115020 | 0.806181 | 9.317192e-50 | -8.615850e-47 |
| Msa0117770 | Msa1115020 | 0.802274 | 6.064157e-49 | -8.615850e-47 |
| Msa0607540 | Msa1115020 | 0.818973 | 1.482386e-52 | -8.615850e-47 |
| Msa0615310 | Msa1115020 | 0.800165 | 1.637653e-48 | -8.615850e-47 |
| Msa0631990 | Msa1115020 | 0.806734 | 7.124367e-50 | -8.615850e-47 |
| Msa0640380 | Msa1115020 | 0.829169 | 5.981763e-55 | -8.615850e-47 |
| Msa0647830 | Msa1115020 | 0.819389 | 1.191909e-52 | -8.615850e-47 |
| Msa0678820 | Msa1115020 | 0.837616 | 4.679561e-57 | -8.615850e-47 |
| Msa0690440 | Msa1115020 | 0.820298 | 7.385623e-53 | -8.615850e-47 |
| Msa0708860 | Msa1115020 | 0.802093 | 6.607642e-49 | -8.615850e-47 |
| Msa0723210 | Msa1115020 | 0.834079 | 3.687360e-56 | -8.615850e-47 |
| Msa0751210 | Msa1115020 | 0.800717 | 1.264057e-48 | -8.615850e-47 |
| Msa0767080 | Msa1115020 | 0.840665 | 7.582591e-58 | -8.615850e-47 |
| Msa0785570 | Msa1115020 | 0.829995 | 3.766399e-55 | -8.615850e-47 |
| Msa0790510 | Msa1115020 | 0.806661 | 7.381995e-50 | -8.615850e-47 |
| Msa0806200 | Msa1115020 | 0.821699 | 3.514249e-53 | -8.615850e-47 |
| Msa0831590 | Msa1115020 | 0.824948 | 6.120075e-54 | -8.615850e-47 |
| Msa0151180 | Msa1115020 | 0.804631 | 1.969220e-49 | -8.615850e-47 |
| Msa0178930 | Msa1115020 | 0.801648 | 8.153510e-49 | -8.615850e-47 |
| Msa0188830 | Msa1115020 | 0.800309 | 1.530840e-48 | -8.615850e-47 |
| Msa0201070 | Msa1115020 | 0.825152 | 5.477313e-54 | -8.615850e-47 |
| Msa0210450 | Msa1115020 | 0.821293 | 4.361654e-53 | -8.615850e-47 |
| Msa0222340 | Msa1115020 | 0.802589 | 5.222218e-49 | -8.615850e-47 |
| Msa0379640 | Msa1115020 | 0.809024 | 2.321726e-50 | -8.615850e-47 |
| Msa0389340 | Msa1115020 | 0.804789 | 1.824849e-49 | -8.615850e-47 |
| Msa0389810 | Msa1115020 | 0.805832 | 1.103525e-49 | -8.615850e-47 |
| Msa0431690 | Msa1115020 | 0.806919 | 6.511432e-50 | -8.615850e-47 |
| Msa0438050 | Msa1115020 | 0.806991 | 6.286831e-50 | -8.615850e-47 |
| Msa0465680 | Msa1115020 | -0.805510 | 1.289507e-49 | -8.615850e-47 |
| Msa0982270 | Msa1115020 | 0.814277 | 1.671955e-51 | -8.615850e-47 |
| Msa0992490 | Msa1115020 | -0.804516 | 2.080863e-49 | -8.615850e-47 |
| Msa1034710 | Msa1115020 | 0.929269 | 8.854900e-93 | -8.615850e-47 |
| Msa1054410 | Msa1115020 | 0.811663 | 6.254369e-51 | -8.615850e-47 |
| Msa1068200 | Msa1115020 | -0.812827 | 3.485051e-51 | -8.615850e-47 |
| Msa1074530 | Msa1115020 | 0.868859 | 4.772706e-66 | -8.615850e-47 |
| Msa1075080 | Msa1115020 | -0.832284 | 1.031810e-55 | -8.615850e-47 |
| Msa1075220 | Msa1115020 | -0.842133 | 3.113828e-58 | -8.615850e-47 |
| Msa1105450 | Msa1115020 | 0.801782 | 7.655309e-49 | -8.615850e-47 |
| Msa0243710 | Msa1115020 | 0.806219 | 9.149478e-50 | -8.615850e-47 |
| Msa0294950 | Msa1115020 | 0.819990 | 8.688052e-53 | -8.615850e-47 |
| Msa0309550 | Msa1115020 | 0.806470 | 8.099385e-50 | -8.615850e-47 |
| Msa0315290 | Msa1115020 | 0.817747 | 2.809636e-52 | -8.615850e-47 |
| Msa1115020 | Msa1116130 | -0.807778 | 4.280728e-50 | -8.615850e-47 |
| Msa1115020 | Msa1118750 | 0.804005 | 2.658723e-49 | -8.615850e-47 |
| Msa1115020 | Msa1139000 | -0.810080 | 1.376789e-50 | -8.615850e-47 |
| Msa1115020 | Msa1143270 | 0.810061 | 1.389752e-50 | -8.615850e-47 |
| Msa1115020 | Msa1156340 | -0.818525 | 1.873273e-52 | -8.615850e-47 |
| Msa1115020 | Msa1162070 | 0.907647 | 4.044106e-81 | -8.615850e-47 |
| Msa1115020 | Msa1162550 | -0.833579 | 4.917580e-56 | -8.615850e-47 |
| Msa1115020 | Msa1186550 | 0.801298 | 9.618448e-49 | -8.615850e-47 |
| Msa1115020 | Msa1224320 | 0.825428 | 4.714150e-54 | -8.615850e-47 |
| Msa1115020 | Msa1233890 | 0.803951 | 2.727974e-49 | -8.615850e-47 |
| Msa1115020 | Msa1279210 | 0.822337 | 2.499959e-53 | -8.615850e-47 |
| Msa1115020 | Msa1322190 | 0.819607 | 1.062838e-52 | -8.615850e-47 |
| Msa1115020 | Msa1384350 | 0.810674 | 1.025209e-50 | -8.615850e-47 |
| Msa1115020 | Msa1392260 | 0.810296 | 1.237197e-50 | -8.615850e-47 |
| Msa1115020 | Msa1393040 | 0.824716 | 6.940877e-54 | -8.615850e-47 |
| Msa1115020 | Msa1418000 | 0.807559 | 4.765600e-50 | -8.615850e-47 |
| Msa1115020 | Msa1443880 | 0.804703 | 1.902308e-49 | -8.615850e-47 |
| Msa1115020 | Msa1445030 | 0.810628 | 1.048679e-50 | -8.615850e-47 |
| Msa1115020 | Msa1451620 | -0.833157 | 6.265235e-56 | -8.615850e-47 |
| Msa1115020 | Msa1458550 | 0.804995 | 1.652598e-49 | -8.615850e-47 |
| Msa1115020 | Msa1464940 | 0.823358 | 1.445657e-53 | -8.615850e-47 |
| Msa0536220 | Msa1115020 | 0.822867 | 1.882452e-53 | -8.615850e-47 |
| Msa0543900 | Msa1115020 | 0.822975 | 1.776142e-53 | -8.615850e-47 |
| Msa0553460 | Msa1115020 | 0.823720 | 1.189622e-53 | -8.615850e-47 |
| Msa0585700 | Msa1115020 | 0.804883 | 1.744054e-49 | -8.615850e-47 |
| Msa0595850 | Msa1115020 | 0.808267 | 3.369061e-50 | -8.615850e-47 |
| Msa0599770 | Msa1115020 | 0.831789 | 1.367887e-55 | -8.615850e-47 |
| Msa0599890 | Msa1115020 | 0.828198 | 1.027084e-54 | -8.615850e-47 |
| Msa0846810 | Msa1115020 | 0.840160 | 1.027734e-57 | -8.615850e-47 |
| Msa0882690 | Msa1115020 | 0.807402 | 5.144719e-50 | -8.615850e-47 |
| Msa0927670 | Msa1115020 | 0.801961 | 7.033592e-49 | -8.615850e-47 |
| Msa0969520 | Msa1115020 | 0.802091 | 6.614274e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115020 | MtrunA17_Chr7g0257771 | 95.699 | 279 | 12 | 0 | 1 | 279 | 1 | 279 | 4.99e-169 | 468 |
| Msa1115020 | MtrunA17_Chr1g0173571 | 59.932 | 292 | 85 | 8 | 1 | 279 | 1 | 273 | 1.37e-99 | 292 |
| Msa1115020 | MtrunA17_Chr8g0377061 | 39.815 | 108 | 65 | 0 | 171 | 278 | 245 | 352 | 1.03e-15 | 76.3 |
| Msa1115020 | MtrunA17_Chr1g0153281 | 34.862 | 109 | 71 | 0 | 163 | 271 | 499 | 607 | 1.40e-12 | 67.8 |
| Msa1115020 | MtrunA17_Chr1g0203401 | 36.508 | 126 | 78 | 2 | 154 | 278 | 82 | 206 | 1.85e-12 | 65.1 |
| Msa1115020 | MtrunA17_Chr8g0376741 | 33.654 | 104 | 69 | 0 | 170 | 273 | 414 | 517 | 2.82e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115020 | AT2G41870.1 | 53.901 | 282 | 96 | 7 | 9 | 279 | 13 | 271 | 1.40e-87 | 262 |
| Msa1115020 | AT3G57540.1 | 51.228 | 285 | 125 | 7 | 5 | 279 | 13 | 293 | 4.60e-82 | 249 |
| Msa1115020 | AT1G67590.1 | 42.593 | 108 | 62 | 0 | 171 | 278 | 229 | 336 | 5.43e-16 | 77.4 |
| Msa1115020 | AT5G23750.3 | 36.842 | 114 | 71 | 1 | 165 | 278 | 114 | 226 | 3.56e-14 | 70.5 |
| Msa1115020 | AT1G30320.1 | 33.929 | 112 | 74 | 0 | 163 | 274 | 387 | 498 | 3.92e-14 | 72.4 |
| Msa1115020 | AT5G23750.1 | 36.842 | 114 | 71 | 1 | 165 | 278 | 87 | 199 | 1.35e-13 | 68.6 |
| Msa1115020 | AT5G23750.2 | 36.842 | 114 | 71 | 1 | 165 | 278 | 86 | 198 | 1.73e-13 | 68.2 |
| Msa1115020 | AT3G48940.1 | 35.849 | 106 | 67 | 1 | 175 | 279 | 70 | 175 | 3.46e-13 | 66.6 |
| Msa1115020 | AT3G61260.1 | 35.354 | 99 | 64 | 0 | 175 | 273 | 107 | 205 | 3.61e-11 | 62.0 |
Find 90 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTATTTGTTCATCTTCT+TGG | 0.075826 | 7_3:+62060902 | None:intergenic |
| TTACTTTAATTAATACTTCT+TGG | 0.186099 | 7_3:-62057939 | Msa1115020:three_prime_UTR |
| CACTCTTTAACTAATTAAAA+AGG | 0.214979 | 7_3:+62058174 | None:intergenic |
| CTAAAATATGAATGAGATAA+TGG | 0.299005 | 7_3:-62057826 | Msa1115020:three_prime_UTR |
| TCATGAGGACTTATGTTGTT+AGG | 0.306493 | 7_3:+62060700 | None:intergenic |
| TGCTGATGCTTTCCTCTCTT+CGG | 0.348171 | 7_3:+62058356 | None:intergenic |
| TTTAGAGAAAATACAGAAGT+AGG | 0.370239 | 7_3:+62057844 | None:intergenic |
| TTTGTTGGTGGTGGAGGAGG+TGG | 0.373160 | 7_3:+62060841 | None:intergenic |
| CATGAGGACTTATGTTGTTA+GGG | 0.407701 | 7_3:+62060701 | None:intergenic |
| CGGTTTGTTGGTGGTGGAGG+AGG | 0.411956 | 7_3:+62060838 | None:intergenic |
| TCACTTATAAACACTCCAAT+TGG | 0.419385 | 7_3:+62058065 | None:intergenic |
| CCGCGGTTTGTTGGTGGTGG+AGG | 0.437166 | 7_3:+62060835 | None:intergenic |
| TGGAAATGGTGAGAAGAGTT+TGG | 0.439573 | 7_3:+62061090 | None:intergenic |
| GTTTGGACCACAAAGAGAAA+TGG | 0.444665 | 7_3:+62061107 | None:intergenic |
| TATACTTAATGAAAACCAAT+TGG | 0.455251 | 7_3:-62058080 | Msa1115020:three_prime_UTR |
| TTCAATGCTCTTGTTCTAGC+AGG | 0.458326 | 7_3:-62060736 | Msa1115020:CDS |
| GGAGACGGAATAGGATCAAA+AGG | 0.460665 | 7_3:+62060562 | None:intergenic |
| AAGTTGCTAAGATTAATAAC+AGG | 0.460825 | 7_3:-62060408 | Msa1115020:CDS |
| CAATGGATGGGAGAGTGAAC+AGG | 0.460888 | 7_3:-62060362 | Msa1115020:CDS |
| TACAGAAGTAGGTAACCATT+AGG | 0.461701 | 7_3:+62057855 | None:intergenic |
| CCGCCGCGGTTTGTTGGTGG+TGG | 0.462987 | 7_3:+62060832 | None:intergenic |
| AAGAACATGTGTCGGTGGAT+AGG | 0.465960 | 7_3:-62060480 | Msa1115020:CDS |
| CCACACCAAACTGTTCCTAA+TGG | 0.474772 | 7_3:-62057870 | Msa1115020:three_prime_UTR |
| AGGTTCAGAAAGCTACTTCA+TGG | 0.476454 | 7_3:-62060342 | Msa1115020:CDS |
| CTGCTAGTAGGAGACGGAAT+AGG | 0.476883 | 7_3:+62060553 | None:intergenic |
| AACAAACCCTTTGGCGATTG+TGG | 0.479682 | 7_3:-62060596 | Msa1115020:CDS |
| GGTAACCATTAGGAACAGTT+TGG | 0.482257 | 7_3:+62057865 | None:intergenic |
| AGAACATGTGTCGGTGGATA+GGG | 0.483606 | 7_3:-62060479 | Msa1115020:CDS |
| GAGATGACGAACGGTGGCTA+TGG | 0.485036 | 7_3:+62060809 | None:intergenic |
| ACATGTCATGCAGAGAAAGC+TGG | 0.491665 | 7_3:-62058442 | Msa1115020:intron |
| GATGGAAGAAACAAACCCTT+TGG | 0.499116 | 7_3:-62060605 | Msa1115020:CDS |
| AGAGAAAAGAGCAAGAGCCT+TGG | 0.499742 | 7_3:-62058418 | Msa1115020:CDS |
| GGTGGAGGAGGTGGAAGTCG+AGG | 0.504511 | 7_3:+62060850 | None:intergenic |
| GCTAATCTTATGAGAGCAGT+TGG | 0.511217 | 7_3:-62058291 | Msa1115020:CDS |
| TTGATGAGGTTGTTAGTGAA+TGG | 0.511495 | 7_3:+62061070 | None:intergenic |
| ATTAGTTAAAGAGTGCAAGA+TGG | 0.512460 | 7_3:-62058166 | Msa1115020:three_prime_UTR |
| TAGAGAAGAGGATCATATGA+TGG | 0.513673 | 7_3:-62060623 | Msa1115020:CDS |
| AGGTTGTTAGTGAATGGAAA+TGG | 0.514033 | 7_3:+62061076 | None:intergenic |
| ACAATAACAATAACAATTTG+AGG | 0.516591 | 7_3:-62060651 | Msa1115020:CDS |
| ATTGTGGTTGTTACACACTT+TGG | 0.523249 | 7_3:-62057975 | Msa1115020:three_prime_UTR |
| TTCACTATCTGTGCTAGCCA+TGG | 0.524133 | 7_3:+62060783 | None:intergenic |
| CCGTTCGTCATCTCTATCCA+TGG | 0.526877 | 7_3:-62060800 | Msa1115020:CDS |
| ACCACAAAGAGAAATGGAAA+AGG | 0.526943 | 7_3:+62061113 | None:intergenic |
| AGAGATGATGCTGTCATCAA+TGG | 0.530421 | 7_3:-62060379 | Msa1115020:CDS |
| TGGCCGCCGCGGTTTGTTGG+TGG | 0.533581 | 7_3:+62060829 | None:intergenic |
| GGTGGATAGGGTAAAGAAAG+AGG | 0.544597 | 7_3:-62060467 | Msa1115020:CDS |
| ATTAGCAATCTCAAGAACTC+TGG | 0.548796 | 7_3:+62058308 | None:intergenic |
| TCCTACTAGCAGAAGAACTA+CGG | 0.555436 | 7_3:-62060542 | Msa1115020:CDS |
| TGTTGCAACTTTGCAAGTGA+CGG | 0.557497 | 7_3:+62057903 | None:intergenic |
| TTTGAGGAGGATTAGAGAAG+AGG | 0.558611 | 7_3:-62060635 | Msa1115020:CDS |
| TTATCTACCACAATCGCCAA+AGG | 0.563144 | 7_3:+62060589 | None:intergenic |
| TTCATCTGATATATGGCTGG+TGG | 0.565413 | 7_3:+62060927 | None:intergenic |
| GTCGAGGTGGTGTTAAAGCA+TGG | 0.566949 | 7_3:+62060866 | None:intergenic |
| TTAGCTGTTTCATGTTCATG+AGG | 0.567830 | 7_3:+62060685 | None:intergenic |
| GCCGTAGTTCTTCTGCTAGT+AGG | 0.572201 | 7_3:+62060541 | None:intergenic |
| TATCTACCACAATCGCCAAA+GGG | 0.572915 | 7_3:+62060590 | None:intergenic |
| AGCAGAAGAACTACGGCTGG+TGG | 0.576648 | 7_3:-62060535 | Msa1115020:CDS |
| TACAATCTCAATAGTACGGA+GGG | 0.579246 | 7_3:+62060978 | None:intergenic |
| GAGGAAATTTCATTCAAGCA+TGG | 0.581153 | 7_3:+62061026 | None:intergenic |
| AGGAACAGTTTGGTGTGGTG+TGG | 0.581154 | 7_3:+62057875 | None:intergenic |
| GGAACAGTTTGGTGTGGTGT+GGG | 0.584773 | 7_3:+62057876 | None:intergenic |
| TGTTATGAAAGAACAAAGTG+AGG | 0.586389 | 7_3:+62061007 | None:intergenic |
| ACTAGCAGAAGAACTACGGC+TGG | 0.586567 | 7_3:-62060538 | Msa1115020:CDS |
| GGAGGAGGTGGAAGTCGAGG+TGG | 0.587365 | 7_3:+62060853 | None:intergenic |
| TGTGTACAATCTCAATAGTA+CGG | 0.588709 | 7_3:+62060974 | None:intergenic |
| CTCGAAGAAAAGCCGAAGAG+AGG | 0.591953 | 7_3:-62058368 | Msa1115020:CDS |
| ATGATGCTGTCATCAATGGA+TGG | 0.593521 | 7_3:-62060375 | Msa1115020:CDS |
| GGTGGAAGTGCACGTTCAAG+TGG | 0.599716 | 7_3:-62060517 | Msa1115020:CDS |
| GCTTAATTATTTGATCATTG+TGG | 0.610985 | 7_3:-62057991 | Msa1115020:three_prime_UTR |
| AGTGCACGTTCAAGTGGTCA+AGG | 0.613039 | 7_3:-62060511 | Msa1115020:CDS |
| GTTCTTCTGCTAGTAGGAGA+CGG | 0.621337 | 7_3:+62060547 | None:intergenic |
| AACGGTGGCTATGGCCGCCG+CGG | 0.623345 | 7_3:+62060818 | None:intergenic |
| GAGACGGAATAGGATCAAAA+GGG | 0.627506 | 7_3:+62060563 | None:intergenic |
| AATAGATTAGTGTTTGAATG+TGG | 0.637549 | 7_3:-62058041 | Msa1115020:three_prime_UTR |
| CCATTAGGAACAGTTTGGTG+TGG | 0.637676 | 7_3:+62057870 | None:intergenic |
| TGATGCTGTCATCAATGGAT+GGG | 0.638726 | 7_3:-62060374 | Msa1115020:CDS |
| ATAACAATAACAATTTGAGG+AGG | 0.648714 | 7_3:-62060648 | Msa1115020:CDS |
| AGAGAGGAAAGCATCAGCAG+AGG | 0.652381 | 7_3:-62058352 | Msa1115020:CDS |
| TTGATGCAAAGATATCAGCT+TGG | 0.653643 | 7_3:-62060441 | Msa1115020:CDS |
| TGGTAGTGAAGAACATGTGT+CGG | 0.675585 | 7_3:-62060488 | Msa1115020:CDS |
| GGTGAGTGTACTAAGTGGTG+TGG | 0.683723 | 7_3:-62058020 | Msa1115020:three_prime_UTR |
| TAGTGAAGAACATGTGTCGG+TGG | 0.696232 | 7_3:-62060485 | Msa1115020:CDS |
| CCTCCACCACCAACAAACCG+CGG | 0.696619 | 7_3:-62060835 | Msa1115020:CDS |
| TTCATGGATGAAGAAAGTTG+AGG | 0.696748 | 7_3:-62060326 | Msa1115020:intron |
| CCATGGATAGAGATGACGAA+CGG | 0.697357 | 7_3:+62060800 | None:intergenic |
| GCACGTTCAAGTGGTCAAGG+TGG | 0.706408 | 7_3:-62060508 | Msa1115020:CDS |
| TGGATAGAGATGACGAACGG+TGG | 0.707481 | 7_3:+62060803 | None:intergenic |
| GTACAATCTCAATAGTACGG+AGG | 0.722339 | 7_3:+62060977 | None:intergenic |
| AATGTGGTGAGTGTACTAAG+TGG | 0.741668 | 7_3:-62058025 | Msa1115020:three_prime_UTR |
| CCACCACCAACAAACCGCGG+CGG | 0.750976 | 7_3:-62060832 | Msa1115020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTTATTATTCTTGAA+TGG | - | chr7_3:62058933-62058952 | Msa1115020:intron | 10.0% |
| !! | TAGAATTTATTGAATAATAA+AGG | + | chr7_3:62059077-62059096 | None:intergenic | 10.0% |
| !! | AGTATATTATATATAATCAA+TGG | + | chr7_3:62059595-62059614 | None:intergenic | 10.0% |
| !!! | TTAATATTGAAAACTTTTTT+AGG | - | chr7_3:62060737-62060756 | Msa1115020:CDS | 10.0% |
| !! | ATGAAAACTAAAAATAAAGT+AGG | - | chr7_3:62058788-62058807 | Msa1115020:intron | 15.0% |
| !! | TATATTAACACTAAGATAAA+AGG | - | chr7_3:62058970-62058989 | Msa1115020:intron | 15.0% |
| !! | TTAAAAGGTAAATTCTAATT+GGG | + | chr7_3:62059299-62059318 | None:intergenic | 15.0% |
| !! | TTTAAAAGGTAAATTCTAAT+TGG | + | chr7_3:62059300-62059319 | None:intergenic | 15.0% |
| !!! | AATTAGAATTTACCTTTTAA+AGG | - | chr7_3:62059299-62059318 | Msa1115020:intron | 15.0% |
| !!! | ATTAGAATTTACCTTTTAAA+GGG | - | chr7_3:62059300-62059319 | Msa1115020:intron | 15.0% |
| !! | ATATATGGAGAAAAAAATTT+GGG | + | chr7_3:62059562-62059581 | None:intergenic | 15.0% |
| !! | AATATATGGAGAAAAAAATT+TGG | + | chr7_3:62059563-62059582 | None:intergenic | 15.0% |
| !!! | AAAAAAGTAATATCAAGTTT+TGG | - | chr7_3:62059966-62059985 | Msa1115020:intron | 15.0% |
| !! | AAACAAGTAATTAATTTCAA+AGG | + | chr7_3:62060084-62060103 | None:intergenic | 15.0% |
| !! | TATATAAAAATAGCATGATA+AGG | - | chr7_3:62060830-62060849 | Msa1115020:CDS | 15.0% |
| !! | TTACTTTAATTAATACTTCT+TGG | - | chr7_3:62061020-62061039 | Msa1115020:five_prime_UTR | 15.0% |
| !! | ACAATAACAATAACAATTTG+AGG | - | chr7_3:62058308-62058327 | Msa1115020:CDS | 20.0% |
| !!! | GGTGAAAAATTATTTTCTAA+TGG | - | chr7_3:62058991-62059010 | Msa1115020:intron | 20.0% |
| !! | AAATACAACTGAGATATAAA+GGG | + | chr7_3:62059121-62059140 | None:intergenic | 20.0% |
| !!! | GATTTGATTGTAATTTGTAA+TGG | + | chr7_3:62059264-62059283 | None:intergenic | 20.0% |
| !! | TAAAAGGTAAATTCTAATTG+GGG | + | chr7_3:62059298-62059317 | None:intergenic | 20.0% |
| !!! | AGACAAATTTTAGTTTGTTA+AGG | - | chr7_3:62059449-62059468 | Msa1115020:intron | 20.0% |
| !!! | GACAAATTTTAGTTTGTTAA+GGG | - | chr7_3:62059450-62059469 | Msa1115020:intron | 20.0% |
| !! | AATGGTTTAAGTCTAATATA+TGG | + | chr7_3:62059577-62059596 | None:intergenic | 20.0% |
| !! | TATATATGTTAGTGTGTTTA+GGG | + | chr7_3:62059877-62059896 | None:intergenic | 20.0% |
| !! | ATATATATGTTAGTGTGTTT+AGG | + | chr7_3:62059878-62059897 | None:intergenic | 20.0% |
| !! | AAATGAACAATTCACTTTAT+AGG | + | chr7_3:62060110-62060129 | None:intergenic | 20.0% |
| !! | GTAAAATTAATAAATGATCG+TGG | + | chr7_3:62060147-62060166 | None:intergenic | 20.0% |
| !!! | AACTTAGAAGAAAGATTTTT+TGG | + | chr7_3:62060705-62060724 | None:intergenic | 20.0% |
| !! | CACTCTTTAACTAATTAAAA+AGG | + | chr7_3:62060788-62060807 | None:intergenic | 20.0% |
| !! | TATACTTAATGAAAACCAAT+TGG | - | chr7_3:62060879-62060898 | Msa1115020:CDS | 20.0% |
| !! | CTAAAATATGAATGAGATAA+TGG | - | chr7_3:62061133-62061152 | Msa1115020:five_prime_UTR | 20.0% |
| ! | ATAACAATAACAATTTGAGG+AGG | - | chr7_3:62058311-62058330 | Msa1115020:CDS | 25.0% |
| ! | AAGTTGCTAAGATTAATAAC+AGG | - | chr7_3:62058551-62058570 | Msa1115020:intron | 25.0% |
| ! | TAATAATTAGTAGGCTGATT+AGG | - | chr7_3:62058743-62058762 | Msa1115020:intron | 25.0% |
| !!! | TGTATTGATTAGTTCAAAGT+TGG | + | chr7_3:62058829-62058848 | None:intergenic | 25.0% |
| ! | AACTAATCAATACATGACAA+AGG | - | chr7_3:62058835-62058854 | Msa1115020:intron | 25.0% |
| ! | CAAATACAACTGAGATATAA+AGG | + | chr7_3:62059122-62059141 | None:intergenic | 25.0% |
| !! | TGTAATTTGTAATGGCTAAT+TGG | + | chr7_3:62059256-62059275 | None:intergenic | 25.0% |
| ! | GAAAAAAAATGCTAGTAATG+AGG | + | chr7_3:62059353-62059372 | None:intergenic | 25.0% |
| ! | CAACTAACACATCTATAAAA+TGG | - | chr7_3:62059791-62059810 | Msa1115020:intron | 25.0% |
| ! | AAATTTCAAAGAAATGGCTT+AGG | + | chr7_3:62059822-62059841 | None:intergenic | 25.0% |
| ! | TGGCTAAAATTTCAAAGAAA+TGG | + | chr7_3:62059828-62059847 | None:intergenic | 25.0% |
| ! | ATATATGTTAGTGTGTTTAG+GGG | + | chr7_3:62059876-62059895 | None:intergenic | 25.0% |
| !!! | CTTTTTTTAGACAAACGTTA+GGG | + | chr7_3:62059953-62059972 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTAGACAAACGTT+AGG | + | chr7_3:62059954-62059973 | None:intergenic | 25.0% |
| ! | TGGATACGTTAGATTATTAT+CGG | - | chr7_3:62060042-62060061 | Msa1115020:intron | 25.0% |
| ! | CAATAATTAGACAATAATGC+AGG | + | chr7_3:62060283-62060302 | None:intergenic | 25.0% |
| ! | TTGTTAAACAAAATGCTAGA+TGG | + | chr7_3:62060361-62060380 | None:intergenic | 25.0% |
| ! | AATTTGAGTATTTAACGTAG+AGG | + | chr7_3:62060389-62060408 | None:intergenic | 25.0% |
| !!! | AATGCTTTGTTTTACTACAA+TGG | + | chr7_3:62060429-62060448 | None:intergenic | 25.0% |
| !!! | CATGACATGTGAATTTTTTT+GGG | + | chr7_3:62060507-62060526 | None:intergenic | 25.0% |
| !!! | CTTTTTTAGGCACAAAAAAA+AGG | - | chr7_3:62060750-62060769 | Msa1115020:CDS | 25.0% |
| ! | AATAGATTAGTGTTTGAATG+TGG | - | chr7_3:62060918-62060937 | Msa1115020:CDS | 25.0% |
| ! | GCTTAATTATTTGATCATTG+TGG | - | chr7_3:62060968-62060987 | Msa1115020:exon | 25.0% |
| ! | TTTAGAGAAAATACAGAAGT+AGG | + | chr7_3:62061118-62061137 | None:intergenic | 25.0% |
| !!! | ATAGTGTGTGTATTTTGATG+AGG | + | chr7_3:62057906-62057925 | None:intergenic | 30.0% |
| TGTTATGAAAGAACAAAGTG+AGG | + | chr7_3:62057955-62057974 | None:intergenic | 30.0% | |
| TGTGTACAATCTCAATAGTA+CGG | + | chr7_3:62057988-62058007 | None:intergenic | 30.0% | |
| !! | CTTGGTTTTCATCTGATATA+TGG | + | chr7_3:62058042-62058061 | None:intergenic | 30.0% |
| ! | CTGTTATTTGTTCATCTTCT+TGG | + | chr7_3:62058060-62058079 | None:intergenic | 30.0% |
| CAGCATGAAATACATAACAA+CGG | + | chr7_3:62058720-62058739 | None:intergenic | 30.0% | |
| TTGTTATGTATTTCATGCTG+TGG | - | chr7_3:62058720-62058739 | Msa1115020:intron | 30.0% | |
| ATGCTGTGGTAATAATTAGT+AGG | - | chr7_3:62058734-62058753 | Msa1115020:intron | 30.0% | |
| TGATTTAGACGTTAAACCTT+TGG | + | chr7_3:62059187-62059206 | None:intergenic | 30.0% | |
| AAAATGATGTTAAGCCAACA+CGG | - | chr7_3:62059221-62059240 | Msa1115020:intron | 30.0% | |
| GTATTTCATGTTTCCTTACT+CGG | - | chr7_3:62059695-62059714 | Msa1115020:intron | 30.0% | |
| TTATAGATGTGTTAGTTGCA+CGG | + | chr7_3:62059789-62059808 | None:intergenic | 30.0% | |
| !!! | AATATCAAGTTTTGGTGTTG+AGG | - | chr7_3:62059974-62059993 | Msa1115020:intron | 30.0% |
| !! | CATGATTTGTTATGGACTTA+TGG | + | chr7_3:62060024-62060043 | None:intergenic | 30.0% |
| CATAAGTCCATAACAAATCA+TGG | - | chr7_3:62060022-62060041 | Msa1115020:intron | 30.0% | |
| !! | AACGTATCCATGATTTGTTA+TGG | + | chr7_3:62060032-62060051 | None:intergenic | 30.0% |
| ! | TTTTCCAATGACAGCAAAAA+GGG | - | chr7_3:62060317-62060336 | Msa1115020:intron | 30.0% |
| !!! | GCATGACATGTGAATTTTTT+TGG | + | chr7_3:62060508-62060527 | None:intergenic | 30.0% |
| !!! | TAGAAGAAAGATTTTTTGGC+AGG | + | chr7_3:62060701-62060720 | None:intergenic | 30.0% |
| ! | ATTAGTTAAAGAGTGCAAGA+TGG | - | chr7_3:62060793-62060812 | Msa1115020:CDS | 30.0% |
| TCACTTATAAACACTCCAAT+TGG | + | chr7_3:62060897-62060916 | None:intergenic | 30.0% | |
| ! | TCCTTTTCCATTTCTCTTTG+TGG | - | chr7_3:62057845-62057864 | Msa1115020:three_prime_UTR | 35.0% |
| ACCACAAAGAGAAATGGAAA+AGG | + | chr7_3:62057849-62057868 | None:intergenic | 35.0% | |
| AGGTTGTTAGTGAATGGAAA+TGG | + | chr7_3:62057886-62057905 | None:intergenic | 35.0% | |
| TTGATGAGGTTGTTAGTGAA+TGG | + | chr7_3:62057892-62057911 | None:intergenic | 35.0% | |
| GAGGAAATTTCATTCAAGCA+TGG | + | chr7_3:62057936-62057955 | None:intergenic | 35.0% | |
| TACAATCTCAATAGTACGGA+GGG | + | chr7_3:62057984-62058003 | None:intergenic | 35.0% | |
| ! | GTTTTCATCTGATATATGGC+TGG | + | chr7_3:62058038-62058057 | None:intergenic | 35.0% |
| CATGAGGACTTATGTTGTTA+GGG | + | chr7_3:62058261-62058280 | None:intergenic | 35.0% | |
| TCATGAGGACTTATGTTGTT+AGG | + | chr7_3:62058262-62058281 | None:intergenic | 35.0% | |
| ! | TTAGCTGTTTCATGTTCATG+AGG | + | chr7_3:62058277-62058296 | None:intergenic | 35.0% |
| TAGAGAAGAGGATCATATGA+TGG | - | chr7_3:62058336-62058355 | Msa1115020:CDS | 35.0% | |
| TTGATGCAAAGATATCAGCT+TGG | - | chr7_3:62058518-62058537 | Msa1115020:intron | 35.0% | |
| TTCATGGATGAAGAAAGTTG+AGG | - | chr7_3:62058633-62058652 | Msa1115020:intron | 35.0% | |
| ! | TCACGATGTTATTTGCATGT+AGG | - | chr7_3:62058681-62058700 | Msa1115020:intron | 35.0% |
| TGGTTGTTGAGTAACCTAAT+TGG | - | chr7_3:62059011-62059030 | Msa1115020:intron | 35.0% | |
| GGTTGTTGAGTAACCTAATT+GGG | - | chr7_3:62059012-62059031 | Msa1115020:intron | 35.0% | |
| GTTGTTGAGTAACCTAATTG+GGG | - | chr7_3:62059013-62059032 | Msa1115020:intron | 35.0% | |
| TGTATTTGCATTGCATGCAT+TGG | - | chr7_3:62059134-62059153 | Msa1115020:intron | 35.0% | |
| GTACTATGTTATCAAGCTCT+AGG | + | chr7_3:62059165-62059184 | None:intergenic | 35.0% | |
| ! | GCTTGATAACATAGTACCAA+AGG | - | chr7_3:62059168-62059187 | Msa1115020:intron | 35.0% |
| AAATGATGTTAAGCCAACAC+GGG | - | chr7_3:62059222-62059241 | Msa1115020:intron | 35.0% | |
| CCTACACAATTCCCTTTAAA+AGG | + | chr7_3:62059314-62059333 | None:intergenic | 35.0% | |
| !! | CCTTTTAAAGGGAATTGTGT+AGG | - | chr7_3:62059311-62059330 | Msa1115020:intron | 35.0% |
| TTTAAAGGGAATTGTGTAGG+AGG | - | chr7_3:62059314-62059333 | Msa1115020:intron | 35.0% | |
| !! | TAGAAGGGTGCTTACATATA+GGG | + | chr7_3:62059626-62059645 | None:intergenic | 35.0% |
| !! | ATAGAAGGGTGCTTACATAT+AGG | + | chr7_3:62059627-62059646 | None:intergenic | 35.0% |
| ACTCTTTGCCTCTAATAGAA+GGG | + | chr7_3:62059641-62059660 | None:intergenic | 35.0% | |
| !! | GCAAAGAGTGCTTACATATA+GGG | - | chr7_3:62059652-62059671 | Msa1115020:intron | 35.0% |
| ! | AATCCTCTTTTGCATTGCAT+TGG | - | chr7_3:62060184-62060203 | Msa1115020:intron | 35.0% |
| TTTCCAATGCAATGCAAAAG+AGG | + | chr7_3:62060190-62060209 | None:intergenic | 35.0% | |
| ! | CTTTTCCAATGACAGCAAAA+AGG | - | chr7_3:62060316-62060335 | Msa1115020:intron | 35.0% |
| TTTCCAATGACAGCAAAAAG+GGG | - | chr7_3:62060318-62060337 | Msa1115020:intron | 35.0% | |
| TAGATGGTGAGAAACATGTT+TGG | + | chr7_3:62060345-62060364 | None:intergenic | 35.0% | |
| !! | CAAAGCATTGACTAACAACT+CGG | - | chr7_3:62060440-62060459 | Msa1115020:CDS | 35.0% |
| !! | AAAGCATTGACTAACAACTC+GGG | - | chr7_3:62060441-62060460 | Msa1115020:CDS | 35.0% |
| ATTAGCAATCTCAAGAACTC+TGG | + | chr7_3:62060654-62060673 | None:intergenic | 35.0% | |
| !!! | AAGAAAGATTTTTTGGCAGG+AGG | + | chr7_3:62060698-62060717 | None:intergenic | 35.0% |
| ATTGTGGTTGTTACACACTT+TGG | - | chr7_3:62060984-62061003 | Msa1115020:five_prime_UTR | 35.0% | |
| TACAGAAGTAGGTAACCATT+AGG | + | chr7_3:62061107-62061126 | None:intergenic | 35.0% | |
| GTTTGGACCACAAAGAGAAA+TGG | + | chr7_3:62057855-62057874 | None:intergenic | 40.0% | |
| TGGAAATGGTGAGAAGAGTT+TGG | + | chr7_3:62057872-62057891 | None:intergenic | 40.0% | |
| GTACAATCTCAATAGTACGG+AGG | + | chr7_3:62057985-62058004 | None:intergenic | 40.0% | |
| TTCATCTGATATATGGCTGG+TGG | + | chr7_3:62058035-62058054 | None:intergenic | 40.0% | |
| TTCAATGCTCTTGTTCTAGC+AGG | - | chr7_3:62058223-62058242 | Msa1115020:three_prime_UTR | 40.0% | |
| TTTGAGGAGGATTAGAGAAG+AGG | - | chr7_3:62058324-62058343 | Msa1115020:CDS | 40.0% | |
| GATGGAAGAAACAAACCCTT+TGG | - | chr7_3:62058354-62058373 | Msa1115020:CDS | 40.0% | |
| TATCTACCACAATCGCCAAA+GGG | + | chr7_3:62058372-62058391 | None:intergenic | 40.0% | |
| TTATCTACCACAATCGCCAA+AGG | + | chr7_3:62058373-62058392 | None:intergenic | 40.0% | |
| GAGACGGAATAGGATCAAAA+GGG | + | chr7_3:62058399-62058418 | None:intergenic | 40.0% | |
| TCCTACTAGCAGAAGAACTA+CGG | - | chr7_3:62058417-62058436 | Msa1115020:CDS | 40.0% | |
| ! | TGGTAGTGAAGAACATGTGT+CGG | - | chr7_3:62058471-62058490 | Msa1115020:intron | 40.0% |
| AGAGATGATGCTGTCATCAA+TGG | - | chr7_3:62058580-62058599 | Msa1115020:intron | 40.0% | |
| ATGATGCTGTCATCAATGGA+TGG | - | chr7_3:62058584-62058603 | Msa1115020:intron | 40.0% | |
| TGATGCTGTCATCAATGGAT+GGG | - | chr7_3:62058585-62058604 | Msa1115020:intron | 40.0% | |
| AGGTTCAGAAAGCTACTTCA+TGG | - | chr7_3:62058617-62058636 | Msa1115020:intron | 40.0% | |
| AGATTGCCTAGCTTGAGTTA+CGG | - | chr7_3:62058891-62058910 | Msa1115020:intron | 40.0% | |
| TAACCTAATTGGGGTGTGTA+GGG | - | chr7_3:62059022-62059041 | Msa1115020:intron | 40.0% | |
| ! | AGACTTACTAGCTAGTTTCC+TGG | + | chr7_3:62059049-62059068 | None:intergenic | 40.0% |
| TTCATTCTCTAACACACCGT+AGG | - | chr7_3:62059487-62059506 | Msa1115020:intron | 40.0% | |
| TCATTCTCTAACACACCGTA+GGG | - | chr7_3:62059488-62059507 | Msa1115020:intron | 40.0% | |
| AGTCACACTCATCATACAGT+GGG | + | chr7_3:62059519-62059538 | None:intergenic | 40.0% | |
| TAGTCACACTCATCATACAG+TGG | + | chr7_3:62059520-62059539 | None:intergenic | 40.0% | |
| TGTAAGCACCCTTCTATTAG+AGG | - | chr7_3:62059630-62059649 | Msa1115020:intron | 40.0% | |
| CACTCTTTGCCTCTAATAGA+AGG | + | chr7_3:62059642-62059661 | None:intergenic | 40.0% | |
| !! | GGCAAAGAGTGCTTACATAT+AGG | - | chr7_3:62059651-62059670 | Msa1115020:intron | 40.0% |
| ! | AGAGTGCTTACATATAGGGA+CGG | - | chr7_3:62059656-62059675 | Msa1115020:intron | 40.0% |
| ! | TTAGAGTACCATCAACCGAT+AGG | + | chr7_3:62059721-62059740 | None:intergenic | 40.0% |
| ! | TCAGACTTTTGATGTCGATG+TGG | + | chr7_3:62059848-62059867 | None:intergenic | 40.0% |
| AAGCCAATAACCTCATTACG+TGG | - | chr7_3:62060221-62060240 | Msa1115020:intron | 40.0% | |
| ACAACAGACTCCTATAGCTT+TGG | - | chr7_3:62060257-62060276 | Msa1115020:intron | 40.0% | |
| ATAATGCAGGCCAAAGCTAT+AGG | + | chr7_3:62060270-62060289 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTGCGTCTTCTCCA+AGG | + | chr7_3:62060561-62060580 | None:intergenic | 40.0% |
| GGCAAAAAGAGGAACTAAAG+TGG | - | chr7_3:62060628-62060647 | Msa1115020:CDS | 40.0% | |
| GCTAATCTTATGAGAGCAGT+TGG | - | chr7_3:62060668-62060687 | Msa1115020:CDS | 40.0% | |
| AATGTGGTGAGTGTACTAAG+TGG | - | chr7_3:62060934-62060953 | Msa1115020:CDS | 40.0% | |
| TGTTGCAACTTTGCAAGTGA+CGG | + | chr7_3:62061059-62061078 | None:intergenic | 40.0% | |
| GGTAACCATTAGGAACAGTT+TGG | + | chr7_3:62061097-62061116 | None:intergenic | 40.0% | |
| CCATGGATAGAGATGACGAA+CGG | + | chr7_3:62058162-62058181 | None:intergenic | 45.0% | |
| TTCACTATCTGTGCTAGCCA+TGG | + | chr7_3:62058179-62058198 | None:intergenic | 45.0% | |
| AACAAACCCTTTGGCGATTG+TGG | - | chr7_3:62058363-62058382 | Msa1115020:CDS | 45.0% | |
| GGAGACGGAATAGGATCAAA+AGG | + | chr7_3:62058400-62058419 | None:intergenic | 45.0% | |
| GTTCTTCTGCTAGTAGGAGA+CGG | + | chr7_3:62058415-62058434 | None:intergenic | 45.0% | |
| TAGTGAAGAACATGTGTCGG+TGG | - | chr7_3:62058474-62058493 | Msa1115020:intron | 45.0% | |
| ! | AAGAACATGTGTCGGTGGAT+AGG | - | chr7_3:62058479-62058498 | Msa1115020:intron | 45.0% |
| ! | AGAACATGTGTCGGTGGATA+GGG | - | chr7_3:62058480-62058499 | Msa1115020:intron | 45.0% |
| GGTGGATAGGGTAAAGAAAG+AGG | - | chr7_3:62058492-62058511 | Msa1115020:intron | 45.0% | |
| TTACCACCGTAACTCAAGCT+AGG | + | chr7_3:62058900-62058919 | None:intergenic | 45.0% | |
| GTAACCTAATTGGGGTGTGT+AGG | - | chr7_3:62059021-62059040 | Msa1115020:intron | 45.0% | |
| AACCTAATTGGGGTGTGTAG+GGG | - | chr7_3:62059023-62059042 | Msa1115020:intron | 45.0% | |
| ATTGGCTATGTTTCCCGTGT+TGG | + | chr7_3:62059238-62059257 | None:intergenic | 45.0% | |
| AGGGAATTGTGTAGGAGGTT+TGG | - | chr7_3:62059319-62059338 | Msa1115020:intron | 45.0% | |
| GGGAATTGTGTAGGAGGTTT+GGG | - | chr7_3:62059320-62059339 | Msa1115020:intron | 45.0% | |
| TGCTTACATATAGGGACGGA+GGG | + | chr7_3:62059660-62059679 | None:intergenic | 45.0% | |
| ! | AGGGTGCTTACATATAGGGA+CGG | + | chr7_3:62059622-62059641 | None:intergenic | 45.0% |
| TGCTTACATATAGGGACGGA+AGG | - | chr7_3:62059660-62059679 | Msa1115020:intron | 45.0% | |
| TGTTTCCTTACTCGGCCTAT+CGG | - | chr7_3:62059703-62059722 | Msa1115020:intron | 45.0% | |
| CCACCACGTAATGAGGTTAT+TGG | + | chr7_3:62060227-62060246 | None:intergenic | 45.0% | |
| CCAATAACCTCATTACGTGG+TGG | - | chr7_3:62060224-62060243 | Msa1115020:intron | 45.0% | |
| ATAACCTCATTACGTGGTGG+TGG | - | chr7_3:62060227-62060246 | Msa1115020:intron | 45.0% | |
| AAAACCACCACCACGTAATG+AGG | + | chr7_3:62060234-62060253 | None:intergenic | 45.0% | |
| ACATGTCATGCAGAGAAAGC+TGG | - | chr7_3:62060517-62060536 | Msa1115020:CDS | 45.0% | |
| AGAGAAAAGAGCAAGAGCCT+TGG | - | chr7_3:62060541-62060560 | Msa1115020:CDS | 45.0% | |
| TGCTGATGCTTTCCTCTCTT+CGG | + | chr7_3:62060606-62060625 | None:intergenic | 45.0% | |
| ! | CCATTAGGAACAGTTTGGTG+TGG | + | chr7_3:62061092-62061111 | None:intergenic | 45.0% |
| CCACACCAAACTGTTCCTAA+TGG | - | chr7_3:62061089-62061108 | Msa1115020:five_prime_UTR | 45.0% | |
| ! | GTCGAGGTGGTGTTAAAGCA+TGG | + | chr7_3:62058096-62058115 | None:intergenic | 50.0% |
| TGGATAGAGATGACGAACGG+TGG | + | chr7_3:62058159-62058178 | None:intergenic | 50.0% | |
| CCGTTCGTCATCTCTATCCA+TGG | - | chr7_3:62058159-62058178 | Msa1115020:three_prime_UTR | 50.0% | |
| CTGCTAGTAGGAGACGGAAT+AGG | + | chr7_3:62058409-62058428 | None:intergenic | 50.0% | |
| GCCGTAGTTCTTCTGCTAGT+AGG | + | chr7_3:62058421-62058440 | None:intergenic | 50.0% | |
| ACTAGCAGAAGAACTACGGC+TGG | - | chr7_3:62058421-62058440 | Msa1115020:CDS | 50.0% | |
| AGTGCACGTTCAAGTGGTCA+AGG | - | chr7_3:62058448-62058467 | Msa1115020:intron | 50.0% | |
| CAATGGATGGGAGAGTGAAC+AGG | - | chr7_3:62058597-62058616 | Msa1115020:intron | 50.0% | |
| TTGCCTAGCTTGAGTTACGG+TGG | - | chr7_3:62058894-62058913 | Msa1115020:intron | 50.0% | |
| TCTCTAACACACCGTAGGGA+CGG | - | chr7_3:62059492-62059511 | Msa1115020:intron | 50.0% | |
| GTGCTTACATATAGGGACGG+AGG | + | chr7_3:62059659-62059678 | None:intergenic | 50.0% | |
| ATCAACCGATAGGCCGAGTA+AGG | + | chr7_3:62059711-62059730 | None:intergenic | 50.0% | |
| ! | TTACTCGGCCTATCGGTTGA+TGG | - | chr7_3:62059710-62059729 | Msa1115020:intron | 50.0% |
| ! | CACGGATTGTTAGAGACGTG+TGG | + | chr7_3:62059748-62059767 | None:intergenic | 50.0% |
| TCTAACAATCCGTGCGTCCT+GGG | - | chr7_3:62059754-62059773 | Msa1115020:intron | 50.0% | |
| !! | GGACCCCTTTTTGCTGTCAT+TGG | + | chr7_3:62060324-62060343 | None:intergenic | 50.0% |
| CTCGAAGAAAAGCCGAAGAG+AGG | - | chr7_3:62060591-62060610 | Msa1115020:CDS | 50.0% | |
| !! | AGAGAGGAAAGCATCAGCAG+AGG | - | chr7_3:62060607-62060626 | Msa1115020:CDS | 50.0% |
| GCATCAGCAGAGGCAAAAAG+AGG | - | chr7_3:62060617-62060636 | Msa1115020:CDS | 50.0% | |
| GGTGAGTGTACTAAGTGGTG+TGG | - | chr7_3:62060939-62060958 | Msa1115020:CDS | 50.0% | |
| !! | GGAACAGTTTGGTGTGGTGT+GGG | + | chr7_3:62061086-62061105 | None:intergenic | 50.0% |
| !! | AGGAACAGTTTGGTGTGGTG+TGG | + | chr7_3:62061087-62061106 | None:intergenic | 50.0% |
| !! | TTTGTTGGTGGTGGAGGAGG+TGG | + | chr7_3:62058121-62058140 | None:intergenic | 55.0% |
| GAGATGACGAACGGTGGCTA+TGG | + | chr7_3:62058153-62058172 | None:intergenic | 55.0% | |
| AGCAGAAGAACTACGGCTGG+TGG | - | chr7_3:62058424-62058443 | Msa1115020:CDS | 55.0% | |
| ! | GGTGGAAGTGCACGTTCAAG+TGG | - | chr7_3:62058442-62058461 | Msa1115020:intron | 55.0% |
| GCACGTTCAAGTGGTCAAGG+TGG | - | chr7_3:62058451-62058470 | Msa1115020:intron | 55.0% | |
| ATACAGTGGGTCCGTCCCTA+CGG | + | chr7_3:62059506-62059525 | None:intergenic | 55.0% | |
| CTCTAACAATCCGTGCGTCC+TGG | - | chr7_3:62059753-62059772 | Msa1115020:intron | 55.0% | |
| AGAGTTGAACCCAGGACGCA+CGG | + | chr7_3:62059766-62059785 | None:intergenic | 55.0% | |
| TTGCACGGAGAGTTGAACCC+AGG | + | chr7_3:62059774-62059793 | None:intergenic | 55.0% | |
| !! | CGGTTTGTTGGTGGTGGAGG+AGG | + | chr7_3:62058124-62058143 | None:intergenic | 60.0% |
| CCTCCACCACCAACAAACCG+CGG | - | chr7_3:62058124-62058143 | Msa1115020:three_prime_UTR | 60.0% | |
| GGCCCCTACACACCCCAATT+AGG | + | chr7_3:62059028-62059047 | None:intergenic | 60.0% | |
| AATTGGGGTGTGTAGGGGCC+AGG | - | chr7_3:62059028-62059047 | Msa1115020:intron | 60.0% | |
| GGAGGAGGTGGAAGTCGAGG+TGG | + | chr7_3:62058109-62058128 | None:intergenic | 65.0% | |
| GGTGGAGGAGGTGGAAGTCG+AGG | + | chr7_3:62058112-62058131 | None:intergenic | 65.0% | |
| !! | CCGCGGTTTGTTGGTGGTGG+AGG | + | chr7_3:62058127-62058146 | None:intergenic | 65.0% |
| CCACCACCAACAAACCGCGG+CGG | - | chr7_3:62058127-62058146 | Msa1115020:three_prime_UTR | 65.0% | |
| CTATGGCCGCCGCGGTTTGT+TGG | + | chr7_3:62058136-62058155 | None:intergenic | 65.0% | |
| !! | CCGCCGCGGTTTGTTGGTGG+TGG | + | chr7_3:62058130-62058149 | None:intergenic | 70.0% |
| !! | TGGCCGCCGCGGTTTGTTGG+TGG | + | chr7_3:62058133-62058152 | None:intergenic | 70.0% |
| AACGGTGGCTATGGCCGCCG+CGG | + | chr7_3:62058144-62058163 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 62057812 | 62061169 | 62057812 | ID=Msa1115020;Name=Msa1115020 |
| chr7_3 | mRNA | 62057812 | 62061169 | 62057812 | ID=Msa1115020-mRNA-1;Parent=Msa1115020;Name=Msa1115020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=195|1|1|1|1|1|2|448|279 |
| chr7_3 | exon | 62057812 | 62058451 | 62057812 | ID=Msa1115020-mRNA-1:exon:14291;Parent=Msa1115020-mRNA-1 |
| chr7_3 | exon | 62060327 | 62061169 | 62060327 | ID=Msa1115020-mRNA-1:exon:14290;Parent=Msa1115020-mRNA-1 |
| chr7_3 | five_prime_UTR | 62060975 | 62061169 | 62060975 | ID=Msa1115020-mRNA-1:five_prime_utr;Parent=Msa1115020-mRNA-1 |
| chr7_3 | CDS | 62060327 | 62060974 | 62060327 | ID=Msa1115020-mRNA-1:cds;Parent=Msa1115020-mRNA-1 |
| chr7_3 | CDS | 62058260 | 62058451 | 62058260 | ID=Msa1115020-mRNA-1:cds;Parent=Msa1115020-mRNA-1 |
| chr7_3 | three_prime_UTR | 62057812 | 62058259 | 62057812 | ID=Msa1115020-mRNA-1:three_prime_utr;Parent=Msa1115020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
