Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163140 | XP_013449742.1 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163140 | sp|Q99633|PRP18_HUMAN | 35.459 | 392 | 187 | 9 | 1 | 376 | 1 | 342 | 1.53e-63 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163140 | A0A072UD53 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0700410 | Msa1163140 | 0.801967 | 7.013539e-49 | -8.615850e-47 |
| Msa1076080 | Msa1163140 | 0.945346 | 3.627129e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163140 | MtrunA17_Chr7g0259901 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163140 | AT1G03140.1 | 70.755 | 424 | 107 | 3 | 1 | 411 | 1 | 420 | 0.0 | 565 |
| Msa1163140 | AT1G54590.1 | 65.411 | 292 | 76 | 7 | 122 | 407 | 85 | 357 | 5.72e-127 | 371 |
Find 140 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATATGATAATGTCAATTA+AGG | 0.185033 | 7_4:-54220583 | None:intergenic |
| CTGTATGAGGCGAGATTATC+TGG | 0.294838 | 7_4:+54220207 | Msa1163140:CDS |
| AAACAACCTGTGACGTTATT+CGG | 0.305283 | 7_4:+54216847 | Msa1163140:CDS |
| TTTCTTGCCGCCGGTTTCTT+CGG | 0.312109 | 7_4:-54216566 | None:intergenic |
| GCATGTACTTCAGGTTCTTC+AGG | 0.319015 | 7_4:+54220147 | Msa1163140:intron |
| AGCAGTTGAGTTTAACAGTT+TGG | 0.335075 | 7_4:+54220444 | Msa1163140:CDS |
| CGGCGGATGACTTCTTGTTT+AGG | 0.340183 | 7_4:-54216811 | None:intergenic |
| CTTAAATACGTTCTCAAAGC+TGG | 0.353113 | 7_4:+54216898 | Msa1163140:CDS |
| CTGGCCTATCGGTGTTACTA+TGG | 0.360585 | 7_4:+54220273 | Msa1163140:CDS |
| TGAGAAGCTCTTGCTTTAGA+AGG | 0.370756 | 7_4:-54216525 | None:intergenic |
| GTGTGATGAGGACAAGATTT+TGG | 0.374080 | 7_4:+54217167 | Msa1163140:CDS |
| TAGAACTGTAAAGAAGATTC+AGG | 0.374392 | 7_4:-54220786 | None:intergenic |
| AGAAGGTCCATCTAGGGTTT+CGG | 0.380166 | 7_4:-54216508 | None:intergenic |
| TTAAACTCAACTGCTTTAGA+TGG | 0.395372 | 7_4:-54220436 | None:intergenic |
| TGTTCGATTTCCACCCCATT+TGG | 0.396431 | 7_4:+54220837 | Msa1163140:three_prime_UTR |
| GTTTATAGTATAGTCAGTTC+AGG | 0.401333 | 7_4:+54220715 | Msa1163140:three_prime_UTR |
| TTCGTCGGGGAGGGAAGCGC+TGG | 0.401745 | 7_4:-54216764 | None:intergenic |
| CTGCAATGGACCATTATATC+AGG | 0.408980 | 7_4:+54220230 | Msa1163140:CDS |
| TTGCTTTAGAAGGTCCATCT+AGG | 0.412477 | 7_4:-54216515 | None:intergenic |
| TCACAGGTTGTTTGAGAAAC+CGG | 0.418075 | 7_4:-54216837 | None:intergenic |
| CGGAGAAGCGGACGGCTAAA+GGG | 0.420729 | 7_4:+54217247 | Msa1163140:CDS |
| AAAATAAATTAACTATCTCT+TGG | 0.424273 | 7_4:-54220559 | None:intergenic |
| CGGTTTCTTCGGCTAGGGAT+TGG | 0.425410 | 7_4:-54216555 | None:intergenic |
| AGTTTAACAGTTTGGCAAAT+GGG | 0.428747 | 7_4:+54220452 | Msa1163140:CDS |
| CGATAGCCAGCCTGATATAA+TGG | 0.430348 | 7_4:-54220240 | None:intergenic |
| TTCAGTGTTCTGATCGGAAA+AGG | 0.433296 | 7_4:-54216460 | None:intergenic |
| TCGGCAGGCACTAATGTTGA+TGG | 0.435972 | 7_4:+54220177 | Msa1163140:CDS |
| TTCGGACGACGGTGCGGTGG+TGG | 0.439684 | 7_4:-54216490 | None:intergenic |
| TGGCTATCGGGAATGCTCCC+TGG | 0.443575 | 7_4:+54220254 | Msa1163140:CDS |
| ACGGAGAAGCGGACGGCTAA+AGG | 0.445518 | 7_4:+54217246 | Msa1163140:CDS |
| GAGTTTAACAGTTTGGCAAA+TGG | 0.450367 | 7_4:+54220451 | Msa1163140:CDS |
| CCGTCGTCCGAAACCCTAGA+TGG | 0.452345 | 7_4:+54216501 | Msa1163140:exon |
| AAGAAGTCATCCGCCGTCTC+CGG | 0.452806 | 7_4:+54216818 | Msa1163140:CDS |
| AGTCAGTTCAGGCGCAGTTT+CGG | 0.454057 | 7_4:+54220726 | Msa1163140:three_prime_UTR |
| TTGAGGAAGAGGCAGAAGAC+GGG | 0.457591 | 7_4:+54216988 | Msa1163140:CDS |
| GATTTGTTTCTGTTGGATCT+CGG | 0.459315 | 7_4:-54216602 | None:intergenic |
| GTATCGCGCACACTGCTTGA+AGG | 0.459806 | 7_4:-54217286 | None:intergenic |
| AGCGGCGGAGGTGACGGAGG+AGG | 0.463997 | 7_4:-54216734 | None:intergenic |
| GAGGATGGTGATGGTGGTGC+TGG | 0.465798 | 7_4:+54217057 | Msa1163140:CDS |
| ATTGCACGGATTCTCAATAC+TGG | 0.466817 | 7_4:-54220617 | None:intergenic |
| GCTGTTGAATGAGTGGAAAC+AGG | 0.467823 | 7_4:+54217203 | Msa1163140:CDS |
| AGTCGTCTGAGGAGAGGCTT+AGG | 0.468760 | 7_4:+54220524 | Msa1163140:CDS |
| CATTATATCAGGCTGGCTAT+CGG | 0.468919 | 7_4:+54220241 | Msa1163140:CDS |
| CATATGATAATGTCAATTAA+GGG | 0.469576 | 7_4:-54220582 | None:intergenic |
| TATGGGGTAACAAGACCAAA+TGG | 0.469893 | 7_4:-54220852 | None:intergenic |
| TGCTTTAGAAGGTCCATCTA+GGG | 0.472036 | 7_4:-54216514 | None:intergenic |
| GCTGGATGAAGCAGCGGCGG+AGG | 0.472515 | 7_4:-54216746 | None:intergenic |
| GGACGACGGTGCGGTGGTGG+TGG | 0.474434 | 7_4:-54216487 | None:intergenic |
| ATTATATCAGGCTGGCTATC+GGG | 0.475178 | 7_4:+54220242 | Msa1163140:CDS |
| GACGGCTAAAGGGAAGTCTA+TGG | 0.476462 | 7_4:+54217257 | Msa1163140:CDS |
| CAATCCCTAGCCGAAGAAAC+CGG | 0.477260 | 7_4:+54216556 | Msa1163140:CDS |
| TTAGCAGAAGAGAGATTTAG+TGG | 0.482256 | 7_4:+54220493 | Msa1163140:CDS |
| GGGAATGCTCCCTGGCCTAT+CGG | 0.486347 | 7_4:+54220262 | Msa1163140:CDS |
| CTATACTATAAACTAATACT+AGG | 0.491395 | 7_4:-54220705 | None:intergenic |
| TCCTACAAAACTTAAACAGC+GGG | 0.493480 | 7_4:-54217314 | None:intergenic |
| GATGATGATTTGAGTGATTG+TGG | 0.495482 | 7_4:+54217081 | Msa1163140:CDS |
| CTGCTTTAGATGGCAGTGTC+GGG | 0.496151 | 7_4:-54220426 | None:intergenic |
| TGATTTCTTGCGTGATATTG+CGG | 0.497819 | 7_4:+54216963 | Msa1163140:CDS |
| GAGGATGGTGCTGCTGAGGA+TGG | 0.497989 | 7_4:+54217042 | Msa1163140:CDS |
| AGGTTCTTCAGGATGACATT+CGG | 0.502212 | 7_4:+54220158 | Msa1163140:intron |
| ATGGGGTAACAAGACCAAAT+GGG | 0.507411 | 7_4:-54220851 | None:intergenic |
| GTTGGTTGATGAGGTTGTTA+CGG | 0.509127 | 7_4:-54216707 | None:intergenic |
| TGCCGCCGGTTTCTTCGGCT+AGG | 0.513870 | 7_4:-54216561 | None:intergenic |
| GAGAATCCGTGCAATGTATG+AGG | 0.514561 | 7_4:+54220625 | Msa1163140:three_prime_UTR |
| TAGTGGTGGTGATAATGATA+AGG | 0.515615 | 7_4:+54217110 | Msa1163140:CDS |
| TGAAGCAGCGGCGGAGGTGA+CGG | 0.515872 | 7_4:-54216740 | None:intergenic |
| CATAGTAACACCGATAGGCC+AGG | 0.517646 | 7_4:-54220272 | None:intergenic |
| TAAGGATTTGAAAAGGATGA+AGG | 0.521027 | 7_4:+54217128 | Msa1163140:CDS |
| ATTTCTCCTCATACATTGCA+CGG | 0.521071 | 7_4:-54220631 | None:intergenic |
| GTTGCGTGAGATGGCGGAGA+CGG | 0.528632 | 7_4:+54217227 | Msa1163140:CDS |
| GGTGGAGACGGTGTCGGAGG+TGG | 0.529873 | 7_4:-54216686 | None:intergenic |
| AGTGATTGTGGTGGATCTAG+TGG | 0.530233 | 7_4:+54217093 | Msa1163140:CDS |
| GCGAGATTATCTGGCTGCAA+TGG | 0.530625 | 7_4:+54220216 | Msa1163140:CDS |
| CAAAGCTGGATTGTTTGAAG+TGG | 0.534244 | 7_4:+54216912 | Msa1163140:CDS |
| AATTAACTATCTCTTGGAGC+AGG | 0.536566 | 7_4:-54220553 | None:intergenic |
| CCTATCGGTGTTACTATGGT+TGG | 0.537411 | 7_4:+54220277 | Msa1163140:CDS |
| CTTCTTGTTTAGGAAGGACG+AGG | 0.539570 | 7_4:-54216801 | None:intergenic |
| ATAATGATAAGGATTTGAAA+AGG | 0.540471 | 7_4:+54217121 | Msa1163140:CDS |
| TTAAGAAGCTGTTGAATGAG+TGG | 0.541386 | 7_4:+54217196 | Msa1163140:CDS |
| TCTTCAGGATGACATTCGGC+AGG | 0.544712 | 7_4:+54220162 | Msa1163140:CDS |
| GTTGAGGAAGAGGCAGAAGA+CGG | 0.547478 | 7_4:+54216987 | Msa1163140:CDS |
| GGTGCTGCTGAGGATGGTGA+TGG | 0.548826 | 7_4:+54217048 | Msa1163140:CDS |
| TAGCAGAAGAGAGATTTAGT+GGG | 0.549817 | 7_4:+54220494 | Msa1163140:CDS |
| AAGCGGCAGAAGGCGGAGGA+TGG | 0.550000 | 7_4:+54217027 | Msa1163140:CDS |
| ACTGCTTTAGATGGCAGTGT+CGG | 0.551623 | 7_4:-54220427 | None:intergenic |
| TTCCTACAAAACTTAAACAG+CGG | 0.554797 | 7_4:-54217315 | None:intergenic |
| GGATGACTTCTTGTTTAGGA+AGG | 0.558895 | 7_4:-54216807 | None:intergenic |
| TTTGAAGAATTTCTTGCCGC+CGG | 0.562591 | 7_4:-54216575 | None:intergenic |
| TGATGGTTGACTGCTGTATG+AGG | 0.563302 | 7_4:+54220194 | Msa1163140:CDS |
| GGAGCGAAACTTAAAACCAA+GGG | 0.566951 | 7_4:-54220684 | None:intergenic |
| GGTTGGTATTCACGAAAGAT+CGG | 0.567075 | 7_4:+54220294 | Msa1163140:CDS |
| GGAGGAAGCGTTGGTTGATG+AGG | 0.570703 | 7_4:-54216716 | None:intergenic |
| GGTTTCGGACGACGGTGCGG+TGG | 0.572672 | 7_4:-54216493 | None:intergenic |
| TAGGAAGCGGCAGAAGGCGG+AGG | 0.573088 | 7_4:+54217023 | Msa1163140:CDS |
| GAGTGATAGGAAGCGGCAGA+AGG | 0.573616 | 7_4:+54217017 | Msa1163140:CDS |
| ACGATGATGCGAGACTCGAT+CGG | 0.578071 | 7_4:+54216875 | Msa1163140:CDS |
| ACAGGAGTTGCGTGAGATGG+CGG | 0.582423 | 7_4:+54217221 | Msa1163140:CDS |
| GCTGCTGAGGATGGTGATGG+TGG | 0.582674 | 7_4:+54217051 | Msa1163140:CDS |
| GGTGACGGAGGAGGAAGCGT+TGG | 0.583513 | 7_4:-54216725 | None:intergenic |
| AGCAGAAGAGAGATTTAGTG+GGG | 0.589925 | 7_4:+54220495 | Msa1163140:CDS |
| AATGGACCATTATATCAGGC+TGG | 0.593837 | 7_4:+54220234 | Msa1163140:CDS |
| AGCGCTGGATGAAGCAGCGG+CGG | 0.595214 | 7_4:-54216749 | None:intergenic |
| ATATTGCGGAGTTGAGGAAG+AGG | 0.597099 | 7_4:+54216977 | Msa1163140:CDS |
| GAAACAGGAGTTGCGTGAGA+TGG | 0.597500 | 7_4:+54217218 | Msa1163140:CDS |
| TGGGGTAACAAGACCAAATG+GGG | 0.601668 | 7_4:-54220850 | None:intergenic |
| GGCGGAGGATGGTGCTGCTG+AGG | 0.603000 | 7_4:+54217038 | Msa1163140:CDS |
| AGATGGCGGAGACGGAGAAG+CGG | 0.603954 | 7_4:+54217235 | Msa1163140:CDS |
| GGCGGAGACGGAGAAGCGGA+CGG | 0.607467 | 7_4:+54217239 | Msa1163140:CDS |
| TGAGGAAGAGGCAGAAGACG+GGG | 0.610880 | 7_4:+54216989 | Msa1163140:CDS |
| TGAAGTGGATAGTGATATGA+CGG | 0.612285 | 7_4:+54216927 | Msa1163140:CDS |
| GATTGTGGTGGATCTAGTGG+TGG | 0.612515 | 7_4:+54217096 | Msa1163140:CDS |
| AGTACTTACAATCAGTGAAG+AGG | 0.612562 | 7_4:+54220377 | Msa1163140:CDS |
| TGATAGGAAGCGGCAGAAGG+CGG | 0.617704 | 7_4:+54217020 | Msa1163140:CDS |
| TCTTCGCCGAATAACGTCAC+AGG | 0.618610 | 7_4:-54216853 | None:intergenic |
| CCATCTAGGGTTTCGGACGA+CGG | 0.619896 | 7_4:-54216501 | None:intergenic |
| GGAAGCGCTGGATGAAGCAG+CGG | 0.620240 | 7_4:-54216752 | None:intergenic |
| AGCAGCGGCGGAGGTGACGG+AGG | 0.622368 | 7_4:-54216737 | None:intergenic |
| TGCGTGATATTGCGGAGTTG+AGG | 0.622575 | 7_4:+54216971 | Msa1163140:CDS |
| TGAGGTTGTTACGGTGGAGA+CGG | 0.623480 | 7_4:-54216698 | None:intergenic |
| GTGGATAGTGATATGACGGA+AGG | 0.630455 | 7_4:+54216931 | Msa1163140:CDS |
| GGTTTGTTCAGTGTTCTGAT+CGG | 0.631334 | 7_4:-54216466 | None:intergenic |
| GCAATCAGTCGTCTGAGGAG+AGG | 0.632643 | 7_4:+54220518 | Msa1163140:CDS |
| GTTTGAGAAACCGGAGACGG+CGG | 0.644055 | 7_4:-54216828 | None:intergenic |
| TGTTACGGTGGAGACGGTGT+CGG | 0.645226 | 7_4:-54216692 | None:intergenic |
| ATAGTAACACCGATAGGCCA+GGG | 0.645385 | 7_4:-54220271 | None:intergenic |
| GATGATTTGAGTGATTGTGG+TGG | 0.645582 | 7_4:+54217084 | Msa1163140:CDS |
| TACGGTGGAGACGGTGTCGG+AGG | 0.648175 | 7_4:-54216689 | None:intergenic |
| AGGAGCGAAACTTAAAACCA+AGG | 0.650880 | 7_4:-54220685 | None:intergenic |
| GTTGTTTGAGAAACCGGAGA+CGG | 0.656084 | 7_4:-54216831 | None:intergenic |
| CCAACCATAGTAACACCGAT+AGG | 0.659700 | 7_4:-54220277 | None:intergenic |
| AGTTTCGGTAAGCACTACAA+TGG | 0.667769 | 7_4:+54220741 | Msa1163140:three_prime_UTR |
| GCAGAAGAGAGATTTAGTGG+GGG | 0.669816 | 7_4:+54220496 | Msa1163140:CDS |
| GGTTGATGAGGTTGTTACGG+TGG | 0.676360 | 7_4:-54216704 | None:intergenic |
| TAGGGTTTCGGACGACGGTG+CGG | 0.679728 | 7_4:-54216496 | None:intergenic |
| GCGAAACTTAAAACCAAGGG+GGG | 0.683849 | 7_4:-54220681 | None:intergenic |
| TTTCGATGAGCTGTGTGATG+AGG | 0.685117 | 7_4:+54217155 | Msa1163140:CDS |
| GAGCGAAACTTAAAACCAAG+GGG | 0.695446 | 7_4:-54220683 | None:intergenic |
| GGTAACAAGACCAAATGGGG+TGG | 0.698675 | 7_4:-54220847 | None:intergenic |
| TCCCTAGCCGAAGAAACCGG+CGG | 0.703034 | 7_4:+54216559 | Msa1163140:CDS |
| AGCGAAACTTAAAACCAAGG+GGG | 0.730880 | 7_4:-54220682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTATATTCTATATTTTA+AGG | + | chr7_4:54217668-54217687 | Msa1163140:intron | 10.0% |
| !!! | AGTTTAAAACAAATTGAATT+AGG | + | chr7_4:54217572-54217591 | Msa1163140:intron | 15.0% |
| !!! | TAGATGTTTTATATTTTTGT+TGG | + | chr7_4:54217785-54217804 | Msa1163140:intron | 15.0% |
| !! | AAATTGTTTAATATACAATC+AGG | + | chr7_4:54218074-54218093 | Msa1163140:intron | 15.0% |
| !!! | GAAAATAACATGATATTTTA+TGG | + | chr7_4:54218921-54218940 | Msa1163140:intron | 15.0% |
| !!! | GGCAATTTTATATTTTATTT+TGG | + | chr7_4:54218942-54218961 | Msa1163140:intron | 15.0% |
| !!! | TTATATTTTATTTTGGATTC+TGG | + | chr7_4:54218949-54218968 | Msa1163140:intron | 15.0% |
| !!! | TTGAATTTTACTGTATAAAT+GGG | + | chr7_4:54219727-54219746 | Msa1163140:intron | 15.0% |
| !!! | AGAATATCTTTAAGATAAAA+GGG | - | chr7_4:54219794-54219813 | None:intergenic | 15.0% |
| !!! | TAGAATATCTTTAAGATAAA+AGG | - | chr7_4:54219795-54219814 | None:intergenic | 15.0% |
| !! | TATTTGAATATCTGTAATAT+AGG | + | chr7_4:54219813-54219832 | Msa1163140:intron | 15.0% |
| !! | TTGTATTCTAACTAATAAAA+TGG | + | chr7_4:54220117-54220136 | Msa1163140:intron | 15.0% |
| !! | AAAATAAATTAACTATCTCT+TGG | - | chr7_4:54220562-54220581 | None:intergenic | 15.0% |
| !! | ATAATGATAAGGATTTGAAA+AGG | + | chr7_4:54217121-54217140 | Msa1163140:CDS | 20.0% |
| !! | TAATTGGATAGTTAATCTTA+GGG | + | chr7_4:54217510-54217529 | Msa1163140:intron | 20.0% |
| !!! | TTATATTTTTGTTGGAAATG+CGG | + | chr7_4:54217793-54217812 | Msa1163140:intron | 20.0% |
| !!! | AATGTAATAGTATTTTCACA+TGG | + | chr7_4:54217884-54217903 | Msa1163140:intron | 20.0% |
| !!! | TTATGCAAATTATTAAGTTG+CGG | - | chr7_4:54218899-54218918 | None:intergenic | 20.0% |
| !! | AAATATGATTGAAGTTGTAA+AGG | + | chr7_4:54219263-54219282 | Msa1163140:intron | 20.0% |
| !! | CAAAGAATTCAATAATAACA+AGG | - | chr7_4:54219526-54219545 | None:intergenic | 20.0% |
| !!! | CTTGTTATTATTGAATTCTT+TGG | + | chr7_4:54219524-54219543 | Msa1163140:intron | 20.0% |
| !!! | GTTGAATTTTACTGTATAAA+TGG | + | chr7_4:54219726-54219745 | Msa1163140:intron | 20.0% |
| !!! | CATATGATAATGTCAATTAA+GGG | - | chr7_4:54220585-54220604 | None:intergenic | 20.0% |
| !!! | TCATATGATAATGTCAATTA+AGG | - | chr7_4:54220586-54220605 | None:intergenic | 20.0% |
| !! | CTATACTATAAACTAATACT+AGG | - | chr7_4:54220708-54220727 | None:intergenic | 20.0% |
| !!! | GTTTAAGTTTTGTAGGAAAA+AGG | + | chr7_4:54217320-54217339 | Msa1163140:CDS | 25.0% |
| !!! | GTATTTGGTGTTAGTTTAAT+AGG | + | chr7_4:54217439-54217458 | Msa1163140:intron | 25.0% |
| ! | CTAATTGGATAGTTAATCTT+AGG | + | chr7_4:54217509-54217528 | Msa1163140:intron | 25.0% |
| ! | AAAACAAATTGAATTAGGAG+TGG | + | chr7_4:54217577-54217596 | Msa1163140:intron | 25.0% |
| !! | ATCTTCTGTCATTATGTTTT+CGG | + | chr7_4:54217610-54217629 | Msa1163140:intron | 25.0% |
| ! | TACAATATTCTTGTGTATCT+AGG | - | chr7_4:54217654-54217673 | None:intergenic | 25.0% |
| !!! | CTATATTTTAAGGTGAGTTT+TGG | + | chr7_4:54217678-54217697 | Msa1163140:intron | 25.0% |
| ! | AATTATGGTAGGATATGTTA+AGG | + | chr7_4:54217711-54217730 | Msa1163140:intron | 25.0% |
| !!! | TATATTTTTGTTGGAAATGC+GGG | + | chr7_4:54217794-54217813 | Msa1163140:intron | 25.0% |
| ! | AAACAATTTGTAAACATGTC+CGG | - | chr7_4:54218063-54218082 | None:intergenic | 25.0% |
| ! | TTAATATACAATCAGGACTT+AGG | + | chr7_4:54218081-54218100 | Msa1163140:intron | 25.0% |
| ! | CAAATCATATGTTTCAAATG+TGG | - | chr7_4:54218125-54218144 | None:intergenic | 25.0% |
| !! | CACATTTGAAACATATGATT+TGG | + | chr7_4:54218123-54218142 | Msa1163140:intron | 25.0% |
| ! | AATACAAAGAACAACTAACA+AGG | - | chr7_4:54218231-54218250 | None:intergenic | 25.0% |
| ! | CTTTGTATTATATGTCTTAG+AGG | + | chr7_4:54218242-54218261 | Msa1163140:intron | 25.0% |
| ! | TTCTCTTATATTGTTTCATG+AGG | - | chr7_4:54218309-54218328 | None:intergenic | 25.0% |
| ! | TTAAAATATCCAATCAGTGT+AGG | - | chr7_4:54218449-54218468 | None:intergenic | 25.0% |
| ! | ATCCACTTTATTCATGTAAA+CGG | + | chr7_4:54218597-54218616 | Msa1163140:intron | 25.0% |
| ! | GTACTATTTGTTTGAAAGAT+GGG | + | chr7_4:54218971-54218990 | Msa1163140:intron | 25.0% |
| ! | AAACTTTAGTGAATTTGATG+TGG | + | chr7_4:54218997-54219016 | Msa1163140:intron | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | chr7_4:54219121-54219140 | Msa1163140:intron | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | chr7_4:54219149-54219168 | None:intergenic | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | + | chr7_4:54219153-54219172 | Msa1163140:intron | 25.0% |
| ! | TCTAACTAATAAAATGGATG+TGG | + | chr7_4:54220123-54220142 | Msa1163140:intron | 25.0% |
| !! | TATTTGTGTAGATCTTTTCA+CGG | - | chr7_4:54220321-54220340 | None:intergenic | 25.0% |
| !! | GAAATTTTACTTGAGATATG+GGG | - | chr7_4:54220871-54220890 | None:intergenic | 25.0% |
| !! | GGAAATTTTACTTGAGATAT+GGG | - | chr7_4:54220872-54220891 | None:intergenic | 25.0% |
| !! | TGGAAATTTTACTTGAGATA+TGG | - | chr7_4:54220873-54220892 | None:intergenic | 25.0% |
| !!! | GTTTTTGGATTTGTTTCTGT+TGG | - | chr7_4:54216612-54216631 | None:intergenic | 30.0% |
| TAAGGATTTGAAAAGGATGA+AGG | + | chr7_4:54217128-54217147 | Msa1163140:CDS | 30.0% | |
| TTCCTACAAAACTTAAACAG+CGG | - | chr7_4:54217318-54217337 | None:intergenic | 30.0% | |
| !!! | AGGTGAGTTTTATTCTGTTT+AGG | + | chr7_4:54217340-54217359 | Msa1163140:intron | 30.0% |
| GAATGTGATTGGAAACTAAT+TGG | + | chr7_4:54217494-54217513 | Msa1163140:intron | 30.0% | |
| !!! | TTTTAAGGTGAGTTTTGGAA+AGG | + | chr7_4:54217683-54217702 | Msa1163140:intron | 30.0% |
| !! | ACTGTTTGAACATGTTTTGA+AGG | + | chr7_4:54217836-54217855 | Msa1163140:intron | 30.0% |
| !! | CTGTTTGAACATGTTTTGAA+GGG | + | chr7_4:54217837-54217856 | Msa1163140:intron | 30.0% |
| ! | GAAACATATGATTTGGATGT+TGG | + | chr7_4:54218130-54218149 | Msa1163140:intron | 30.0% |
| GGGAGAGTTTCTTTAAATTT+AGG | - | chr7_4:54218335-54218354 | None:intergenic | 30.0% | |
| TCTTTGCATGGATAAAGTTT+GGG | - | chr7_4:54218506-54218525 | None:intergenic | 30.0% | |
| TTATCCATGCAAAGAGTAAA+CGG | + | chr7_4:54218511-54218530 | Msa1163140:intron | 30.0% | |
| GAGGTTTACATGGATAAAAT+TGG | - | chr7_4:54218577-54218596 | None:intergenic | 30.0% | |
| TTACATGAATAAAGTGGATG+AGG | - | chr7_4:54218596-54218615 | None:intergenic | 30.0% | |
| TGAGGTTTACATGAATAAAG+TGG | - | chr7_4:54218602-54218621 | None:intergenic | 30.0% | |
| TTACATGAATAAAGTGGATG+AGG | - | chr7_4:54218596-54218615 | None:intergenic | 30.0% | |
| !! | TTGGTTCTAAAAATATCCAG+TGG | - | chr7_4:54218704-54218723 | None:intergenic | 30.0% |
| ATCAGAGTACAGTACAAAAT+TGG | - | chr7_4:54218723-54218742 | None:intergenic | 30.0% | |
| ! | ATTATTAAGTTGCGGTAACA+AGG | - | chr7_4:54218891-54218910 | None:intergenic | 30.0% |
| GGTACTATTTGTTTGAAAGA+TGG | + | chr7_4:54218970-54218989 | Msa1163140:intron | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | + | chr7_4:54219133-54219152 | Msa1163140:intron | 30.0% |
| ! | TTTGCTATAAATTCCGTAGT+TGG | + | chr7_4:54219290-54219309 | Msa1163140:intron | 30.0% |
| TACATTCATGATTCCAACTA+CGG | - | chr7_4:54219306-54219325 | None:intergenic | 30.0% | |
| ! | ATTTTACACACCAATTCACA+AGG | - | chr7_4:54219336-54219355 | None:intergenic | 30.0% |
| CTACATCTCACTTTAGATTT+GGG | - | chr7_4:54219386-54219405 | None:intergenic | 30.0% | |
| TCTACATCTCACTTTAGATT+TGG | - | chr7_4:54219387-54219406 | None:intergenic | 30.0% | |
| ATCAAGCAATTCAGTGATAT+GGG | + | chr7_4:54219456-54219475 | Msa1163140:intron | 30.0% | |
| ! | TCTGCATTTCACGTATATTT+TGG | + | chr7_4:54219602-54219621 | Msa1163140:intron | 30.0% |
| !! | ACGTATATTTTGGAGAATAC+AGG | + | chr7_4:54219612-54219631 | Msa1163140:intron | 30.0% |
| !!! | TTGTTCTTTTGTTTTGACTC+AGG | + | chr7_4:54219679-54219698 | Msa1163140:intron | 30.0% |
| !!! | TGTTTTGACTCAGGAAATTT+AGG | + | chr7_4:54219688-54219707 | Msa1163140:intron | 30.0% |
| ! | TTATTTGAGATCCTATGTCA+TGG | + | chr7_4:54219991-54220010 | Msa1163140:intron | 30.0% |
| ! | TATTTGAGATCCTATGTCAT+GGG | + | chr7_4:54219992-54220011 | Msa1163140:intron | 30.0% |
| ! | ATTTGTGTAGATCTTTTCAC+GGG | - | chr7_4:54220320-54220339 | None:intergenic | 30.0% |
| ! | TTAAACTCAACTGCTTTAGA+TGG | - | chr7_4:54220439-54220458 | None:intergenic | 30.0% |
| AGTTTAACAGTTTGGCAAAT+GGG | + | chr7_4:54220452-54220471 | Msa1163140:CDS | 30.0% | |
| GTTTATAGTATAGTCAGTTC+AGG | + | chr7_4:54220715-54220734 | Msa1163140:three_prime_UTR | 30.0% | |
| GATACAAGACCTAAAAATGA+AGG | - | chr7_4:54220767-54220786 | None:intergenic | 30.0% | |
| TAGAACTGTAAAGAAGATTC+AGG | - | chr7_4:54220789-54220808 | None:intergenic | 30.0% | |
| !! | GGAAAAGGTTTTTGAGGATT+TGG | - | chr7_4:54216448-54216467 | None:intergenic | 35.0% |
| !! | GATTTGTTTCTGTTGGATCT+CGG | - | chr7_4:54216605-54216624 | None:intergenic | 35.0% |
| !!! | TGAGTTGCGTTTTTTGGATT+TGG | - | chr7_4:54216665-54216684 | None:intergenic | 35.0% |
| AAACAACCTGTGACGTTATT+CGG | + | chr7_4:54216847-54216866 | Msa1163140:CDS | 35.0% | |
| CTTAAATACGTTCTCAAAGC+TGG | + | chr7_4:54216898-54216917 | Msa1163140:CDS | 35.0% | |
| TGAAGTGGATAGTGATATGA+CGG | + | chr7_4:54216927-54216946 | Msa1163140:CDS | 35.0% | |
| TGATTTCTTGCGTGATATTG+CGG | + | chr7_4:54216963-54216982 | Msa1163140:CDS | 35.0% | |
| GATGATGATTTGAGTGATTG+TGG | + | chr7_4:54217081-54217100 | Msa1163140:CDS | 35.0% | |
| ! | TAGTGGTGGTGATAATGATA+AGG | + | chr7_4:54217110-54217129 | Msa1163140:CDS | 35.0% |
| TTAAGAAGCTGTTGAATGAG+TGG | + | chr7_4:54217196-54217215 | Msa1163140:CDS | 35.0% | |
| TCCTACAAAACTTAAACAGC+GGG | - | chr7_4:54217317-54217336 | None:intergenic | 35.0% | |
| !! | CATTTAGCAAACCACTTTTC+TGG | + | chr7_4:54217417-54217436 | Msa1163140:intron | 35.0% |
| !! | CAAACCACTTTTCTGGTATT+TGG | + | chr7_4:54217424-54217443 | Msa1163140:intron | 35.0% |
| AACACCAAATACCAGAAAAG+TGG | - | chr7_4:54217431-54217450 | None:intergenic | 35.0% | |
| TAGGAAAACTTACATGCTAG+TGG | + | chr7_4:54217458-54217477 | Msa1163140:intron | 35.0% | |
| TGCATCAGTTAGAATGTGAT+TGG | + | chr7_4:54217483-54217502 | Msa1163140:intron | 35.0% | |
| TTGTTAACTGTTTGCCGAAA+TGG | + | chr7_4:54217538-54217557 | Msa1163140:intron | 35.0% | |
| TGTTAACTGTTTGCCGAAAT+GGG | + | chr7_4:54217539-54217558 | Msa1163140:intron | 35.0% | |
| ACTTCACTATGTTCCCATTT+CGG | - | chr7_4:54217555-54217574 | None:intergenic | 35.0% | |
| ACAAATTGAATTAGGAGTGG+TGG | + | chr7_4:54217580-54217599 | Msa1163140:intron | 35.0% | |
| CAAATTGAATTAGGAGTGGT+GGG | + | chr7_4:54217581-54217600 | Msa1163140:intron | 35.0% | |
| ! | TTCTGTCATTATGTTTTCGG+AGG | + | chr7_4:54217613-54217632 | Msa1163140:intron | 35.0% |
| ! | TTTTCGGAGGACTTTTTGTA+TGG | + | chr7_4:54217626-54217645 | Msa1163140:intron | 35.0% |
| TTTGGAAAGGTGGTGAATTA+TGG | + | chr7_4:54217696-54217715 | Msa1163140:intron | 35.0% | |
| ! | TATTTTCACATGGAGAGTGA+AGG | + | chr7_4:54217894-54217913 | Msa1163140:intron | 35.0% |
| ! | TTTTACCTTGCATTTGTGAG+AGG | + | chr7_4:54217953-54217972 | Msa1163140:intron | 35.0% |
| ATATACAATCAGGACTTAGG+AGG | + | chr7_4:54218084-54218103 | Msa1163140:intron | 35.0% | |
| ! | TTTTACACAGCAGAACTTCT+TGG | - | chr7_4:54218277-54218296 | None:intergenic | 35.0% |
| AAGAAGTTCTGCTGTGTAAA+AGG | + | chr7_4:54218276-54218295 | Msa1163140:intron | 35.0% | |
| !! | AAGGTGGATGAGGTTTTAAT+GGG | - | chr7_4:54218355-54218374 | None:intergenic | 35.0% |
| !! | TAAGGTGGATGAGGTTTTAA+TGG | - | chr7_4:54218356-54218375 | None:intergenic | 35.0% |
| ATCCACCTTATCCTTGTAAA+CGG | + | chr7_4:54218366-54218385 | Msa1163140:intron | 35.0% | |
| !! | AGACTTTTTCCTACACTGAT+TGG | + | chr7_4:54218437-54218456 | Msa1163140:intron | 35.0% |
| ATCAGAGTACAGTACAACAT+TGG | - | chr7_4:54218475-54218494 | None:intergenic | 35.0% | |
| TTGTACTGTACTCTGATTCA+TGG | + | chr7_4:54218478-54218497 | Msa1163140:intron | 35.0% | |
| CTCTTTGCATGGATAAAGTT+TGG | - | chr7_4:54218507-54218526 | None:intergenic | 35.0% | |
| TAAAGTGGATGAGGTTTACA+TGG | - | chr7_4:54218587-54218606 | None:intergenic | 35.0% | |
| CACCGTTTACATGAATAAAG+TGG | - | chr7_4:54218626-54218645 | None:intergenic | 35.0% | |
| TGCTGTACAGACTACATTAT+TGG | - | chr7_4:54218664-54218683 | None:intergenic | 35.0% | |
| TTGTACTGTACTCTGATTCA+TGG | + | chr7_4:54218478-54218497 | Msa1163140:intron | 35.0% | |
| !! | AAGCCTTATTTCACTAAGTG+GGG | - | chr7_4:54219202-54219221 | None:intergenic | 35.0% |
| !! | CAAGCCTTATTTCACTAAGT+GGG | - | chr7_4:54219203-54219222 | None:intergenic | 35.0% |
| ! | TCTAAAGTGAGATGTAGAAC+TGG | + | chr7_4:54219389-54219408 | Msa1163140:intron | 35.0% |
| CTAAAGTGAGATGTAGAACT+GGG | + | chr7_4:54219390-54219409 | Msa1163140:intron | 35.0% | |
| GATCAAGCAATTCAGTGATA+TGG | + | chr7_4:54219455-54219474 | Msa1163140:intron | 35.0% | |
| TGTCTATATGCACGTATTGT+TGG | + | chr7_4:54219550-54219569 | Msa1163140:intron | 35.0% | |
| GTCTATATGCACGTATTGTT+GGG | + | chr7_4:54219551-54219570 | Msa1163140:intron | 35.0% | |
| !! | AGGTTTTAACCTTGTTAGAG+TGG | + | chr7_4:54219632-54219651 | Msa1163140:intron | 35.0% |
| AGTCTTTAAACACTCCAAGA+GGG | - | chr7_4:54219658-54219677 | None:intergenic | 35.0% | |
| TAGTCTTTAAACACTCCAAG+AGG | - | chr7_4:54219659-54219678 | None:intergenic | 35.0% | |
| GTATAAATGGGAACTCTTGA+AGG | + | chr7_4:54219739-54219758 | Msa1163140:intron | 35.0% | |
| ! | GAACTCTTGAAGGATTTTAC+TGG | + | chr7_4:54219749-54219768 | Msa1163140:intron | 35.0% |
| ! | TTGAAGGATTTTACTGGACT+TGG | + | chr7_4:54219755-54219774 | Msa1163140:intron | 35.0% |
| ! | TGAAGGATTTTACTGGACTT+GGG | + | chr7_4:54219756-54219775 | Msa1163140:intron | 35.0% |
| !! | CGCTAAATATCAATTTGCTG+CGG | - | chr7_4:54219842-54219861 | None:intergenic | 35.0% |
| GCGAGTATTTGTACTTTGTT+TGG | + | chr7_4:54219859-54219878 | Msa1163140:intron | 35.0% | |
| CAACGCAATACTAAGACAAA+TGG | - | chr7_4:54219924-54219943 | None:intergenic | 35.0% | |
| GATCTCAAATAACCAGCTAA+GGG | - | chr7_4:54219983-54220002 | None:intergenic | 35.0% | |
| AGTACTTACAATCAGTGAAG+AGG | + | chr7_4:54220377-54220396 | Msa1163140:CDS | 35.0% | |
| ! | GGTTAATGACATTTTGCCAA+CGG | + | chr7_4:54220398-54220417 | Msa1163140:CDS | 35.0% |
| AGCAGTTGAGTTTAACAGTT+TGG | + | chr7_4:54220444-54220463 | Msa1163140:CDS | 35.0% | |
| GAGTTTAACAGTTTGGCAAA+TGG | + | chr7_4:54220451-54220470 | Msa1163140:CDS | 35.0% | |
| TTAGCAGAAGAGAGATTTAG+TGG | + | chr7_4:54220493-54220512 | Msa1163140:CDS | 35.0% | |
| TAGCAGAAGAGAGATTTAGT+GGG | + | chr7_4:54220494-54220513 | Msa1163140:CDS | 35.0% | |
| AATTAACTATCTCTTGGAGC+AGG | - | chr7_4:54220556-54220575 | None:intergenic | 35.0% | |
| ATTTCTCCTCATACATTGCA+CGG | - | chr7_4:54220634-54220653 | None:intergenic | 35.0% | |
| !! | CTACAATGGCCTTCATTTTT+AGG | + | chr7_4:54220755-54220774 | Msa1163140:three_prime_UTR | 35.0% |
| ! | CTGATCGGAAAAGGTTTTTG+AGG | - | chr7_4:54216454-54216473 | None:intergenic | 40.0% |
| TTCAGTGTTCTGATCGGAAA+AGG | - | chr7_4:54216463-54216482 | None:intergenic | 40.0% | |
| ! | GGTTTGTTCAGTGTTCTGAT+CGG | - | chr7_4:54216469-54216488 | None:intergenic | 40.0% |
| !! | TGCTTTAGAAGGTCCATCTA+GGG | - | chr7_4:54216517-54216536 | None:intergenic | 40.0% |
| !! | TTGCTTTAGAAGGTCCATCT+AGG | - | chr7_4:54216518-54216537 | None:intergenic | 40.0% |
| ! | TGAGAAGCTCTTGCTTTAGA+AGG | - | chr7_4:54216528-54216547 | None:intergenic | 40.0% |
| TTTGAAGAATTTCTTGCCGC+CGG | - | chr7_4:54216578-54216597 | None:intergenic | 40.0% | |
| ! | TTTCTTCTTCGCGGAGTTTT+TGG | - | chr7_4:54216627-54216646 | None:intergenic | 40.0% |
| !! | GTTGGTTGATGAGGTTGTTA+CGG | - | chr7_4:54216710-54216729 | None:intergenic | 40.0% |
| !! | TGTCTATGTTTTGTTCGTCG+GGG | - | chr7_4:54216780-54216799 | None:intergenic | 40.0% |
| !! | CTGTCTATGTTTTGTTCGTC+GGG | - | chr7_4:54216781-54216800 | None:intergenic | 40.0% |
| !! | GCTGTCTATGTTTTGTTCGT+CGG | - | chr7_4:54216782-54216801 | None:intergenic | 40.0% |
| ! | GGATGACTTCTTGTTTAGGA+AGG | - | chr7_4:54216810-54216829 | None:intergenic | 40.0% |
| TCACAGGTTGTTTGAGAAAC+CGG | - | chr7_4:54216840-54216859 | None:intergenic | 40.0% | |
| CAAAGCTGGATTGTTTGAAG+TGG | + | chr7_4:54216912-54216931 | Msa1163140:CDS | 40.0% | |
| !! | GGATTTTGAGTGATAGGAAG+CGG | + | chr7_4:54217010-54217029 | Msa1163140:CDS | 40.0% |
| GATGATTTGAGTGATTGTGG+TGG | + | chr7_4:54217084-54217103 | Msa1163140:CDS | 40.0% | |
| ! | GTGTGATGAGGACAAGATTT+TGG | + | chr7_4:54217167-54217186 | Msa1163140:CDS | 40.0% |
| !! | ACCCGCTGTTTAAGTTTTGT+AGG | + | chr7_4:54217313-54217332 | Msa1163140:CDS | 40.0% |
| !!! | TAAGGTGAGTTTTGGAAAGG+TGG | + | chr7_4:54217686-54217705 | Msa1163140:intron | 40.0% |
| GAAAGGTGGTGAATTATGGT+AGG | + | chr7_4:54217700-54217719 | Msa1163140:intron | 40.0% | |
| ATCAACCTCTCACAAATGCA+AGG | - | chr7_4:54217961-54217980 | None:intergenic | 40.0% | |
| !! | AAGGTCACAAGTTTGAGTTG+TGG | - | chr7_4:54217985-54218004 | None:intergenic | 40.0% |
| GTTGAAGCAACAATTGGAGT+TGG | - | chr7_4:54218022-54218041 | None:intergenic | 40.0% | |
| !! | TTTTATCCCCTCTGCTTTTG+TGG | + | chr7_4:54218155-54218174 | Msa1163140:intron | 40.0% |
| AATCACACCACAAAAGCAGA+GGG | - | chr7_4:54218165-54218184 | None:intergenic | 40.0% | |
| TCATAGTCGTTCCTTTCTAG+TGG | + | chr7_4:54218195-54218214 | Msa1163140:intron | 40.0% | |
| TTACAAGGATAAGGTGGATG+AGG | - | chr7_4:54218365-54218384 | None:intergenic | 40.0% | |
| TCAAACTGGTAGCACCAATA+AGG | + | chr7_4:54218392-54218411 | Msa1163140:intron | 40.0% | |
| TGCTGTGCAGACTACATTAT+TGG | - | chr7_4:54218554-54218573 | None:intergenic | 40.0% | |
| ! | AAACTAGAGACGTTTTCCAC+TGG | + | chr7_4:54218685-54218704 | Msa1163140:intron | 40.0% |
| CTGCACTTGAATCTCAATCA+AGG | - | chr7_4:54218794-54218813 | None:intergenic | 40.0% | |
| !! | AATGCTTAGCTTTGTAGCAG+TGG | + | chr7_4:54218839-54218858 | Msa1163140:intron | 40.0% |
| !! | ATGCTTAGCTTTGTAGCAGT+GGG | + | chr7_4:54218840-54218859 | Msa1163140:intron | 40.0% |
| CTTATTTCACTAAGTGGGGT+CGG | - | chr7_4:54219198-54219217 | None:intergenic | 40.0% | |
| !! | CCAAGCCTTATTTCACTAAG+TGG | - | chr7_4:54219204-54219223 | None:intergenic | 40.0% |
| CCACTTAGTGAAATAAGGCT+TGG | + | chr7_4:54219201-54219220 | Msa1163140:intron | 40.0% | |
| ! | GTATTCTCAGCCTTGTGAAT+TGG | + | chr7_4:54219323-54219342 | Msa1163140:intron | 40.0% |
| AAGAACCTATTACACAAGCC+CGG | - | chr7_4:54219901-54219920 | None:intergenic | 40.0% | |
| GGATCTCAAATAACCAGCTA+AGG | - | chr7_4:54219984-54220003 | None:intergenic | 40.0% | |
| GATATGAAATGTGTCAGTGC+TGG | + | chr7_4:54220077-54220096 | Msa1163140:intron | 40.0% | |
| AGGTTCTTCAGGATGACATT+CGG | + | chr7_4:54220158-54220177 | Msa1163140:intron | 40.0% | |
| CTGCAATGGACCATTATATC+AGG | + | chr7_4:54220230-54220249 | Msa1163140:CDS | 40.0% | |
| AATGGACCATTATATCAGGC+TGG | + | chr7_4:54220234-54220253 | Msa1163140:CDS | 40.0% | |
| ! | CATTATATCAGGCTGGCTAT+CGG | + | chr7_4:54220241-54220260 | Msa1163140:CDS | 40.0% |
| ! | ATTATATCAGGCTGGCTATC+GGG | + | chr7_4:54220242-54220261 | Msa1163140:CDS | 40.0% |
| ! | GGTTGGTATTCACGAAAGAT+CGG | + | chr7_4:54220294-54220313 | Msa1163140:CDS | 40.0% |
| AGCAGAAGAGAGATTTAGTG+GGG | + | chr7_4:54220495-54220514 | Msa1163140:CDS | 40.0% | |
| ATTGCACGGATTCTCAATAC+TGG | - | chr7_4:54220620-54220639 | None:intergenic | 40.0% | |
| AGCGAAACTTAAAACCAAGG+GGG | - | chr7_4:54220685-54220704 | None:intergenic | 40.0% | |
| GAGCGAAACTTAAAACCAAG+GGG | - | chr7_4:54220686-54220705 | None:intergenic | 40.0% | |
| GGAGCGAAACTTAAAACCAA+GGG | - | chr7_4:54220687-54220706 | None:intergenic | 40.0% | |
| AGGAGCGAAACTTAAAACCA+AGG | - | chr7_4:54220688-54220707 | None:intergenic | 40.0% | |
| AGTTTCGGTAAGCACTACAA+TGG | + | chr7_4:54220741-54220760 | Msa1163140:three_prime_UTR | 40.0% | |
| ATGGGGTAACAAGACCAAAT+GGG | - | chr7_4:54220854-54220873 | None:intergenic | 40.0% | |
| TATGGGGTAACAAGACCAAA+TGG | - | chr7_4:54220855-54220874 | None:intergenic | 40.0% | |
| ! | AGAAGGTCCATCTAGGGTTT+CGG | - | chr7_4:54216511-54216530 | None:intergenic | 45.0% |
| ! | GTTCGCGTTTTTCTTCTTCG+CGG | - | chr7_4:54216636-54216655 | None:intergenic | 45.0% |
| !!! | GGTGGTTGAGTTGCGTTTTT+TGG | - | chr7_4:54216671-54216690 | None:intergenic | 45.0% |
| !! | TATGTTTTGTTCGTCGGGGA+GGG | - | chr7_4:54216776-54216795 | None:intergenic | 45.0% |
| ! | CTTCTTGTTTAGGAAGGACG+AGG | - | chr7_4:54216804-54216823 | None:intergenic | 45.0% |
| GTTGTTTGAGAAACCGGAGA+CGG | - | chr7_4:54216834-54216853 | None:intergenic | 45.0% | |
| ! | GTGGATAGTGATATGACGGA+AGG | + | chr7_4:54216931-54216950 | Msa1163140:CDS | 45.0% |
| ATATTGCGGAGTTGAGGAAG+AGG | + | chr7_4:54216977-54216996 | Msa1163140:CDS | 45.0% | |
| !! | AGACGGGGATTTTGAGTGAT+AGG | + | chr7_4:54217004-54217023 | Msa1163140:CDS | 45.0% |
| !! | AGTGATTGTGGTGGATCTAG+TGG | + | chr7_4:54217093-54217112 | Msa1163140:CDS | 45.0% |
| TTTCGATGAGCTGTGTGATG+AGG | + | chr7_4:54217155-54217174 | Msa1163140:CDS | 45.0% | |
| GCTGTTGAATGAGTGGAAAC+AGG | + | chr7_4:54217203-54217222 | Msa1163140:CDS | 45.0% | |
| TCACATGGAGAGTGAAGGAA+AGG | + | chr7_4:54217899-54217918 | Msa1163140:intron | 45.0% | |
| !!! | GTTGGTTTTGTGCGACTAGA+AGG | - | chr7_4:54218004-54218023 | None:intergenic | 45.0% |
| ! | TCCAATTGTTGCTTCAACGC+TGG | + | chr7_4:54218024-54218043 | Msa1163140:intron | 45.0% |
| ! | TCCAGCGTTGAAGCAACAAT+TGG | - | chr7_4:54218028-54218047 | None:intergenic | 45.0% |
| ! | AATCAGGACTTAGGAGGCAT+TGG | + | chr7_4:54218090-54218109 | Msa1163140:intron | 45.0% |
| ATCACACCACAAAAGCAGAG+GGG | - | chr7_4:54218164-54218183 | None:intergenic | 45.0% | |
| GAATCACACCACAAAAGCAG+AGG | - | chr7_4:54218166-54218185 | None:intergenic | 45.0% | |
| ! | TAGTCGTTCCTTTCTAGTGG+AGG | + | chr7_4:54218198-54218217 | Msa1163140:intron | 45.0% |
| GCTCAAATCCTCCACTAGAA+AGG | - | chr7_4:54218209-54218228 | None:intergenic | 45.0% | |
| CACCGTTTACAAGGATAAGG+TGG | - | chr7_4:54218371-54218390 | None:intergenic | 45.0% | |
| ! | GAGCACCGTTTACAAGGATA+AGG | - | chr7_4:54218374-54218393 | None:intergenic | 45.0% |
| ! | CAGTTTGAGCACCGTTTACA+AGG | - | chr7_4:54218380-54218399 | None:intergenic | 45.0% |
| CTTGTAAACGGTGCTCAAAC+TGG | + | chr7_4:54218378-54218397 | Msa1163140:intron | 45.0% | |
| ACCAATAAGGTAGTCTGCAC+AGG | + | chr7_4:54218405-54218424 | Msa1163140:intron | 45.0% | |
| TCCTGTGCAGACTACCTTAT+TGG | - | chr7_4:54218409-54218428 | None:intergenic | 45.0% | |
| AGCACCGTTTACTCTTTGCA+TGG | - | chr7_4:54218518-54218537 | None:intergenic | 45.0% | |
| !! | TGCTTAGCTTTGTAGCAGTG+GGG | + | chr7_4:54218841-54218860 | Msa1163140:intron | 45.0% |
| CGACCCCACTTAGTGAAATA+AGG | + | chr7_4:54219196-54219215 | Msa1163140:intron | 45.0% | |
| TGGATGACTCAGTCTATGAC+CGG | + | chr7_4:54219879-54219898 | Msa1163140:intron | 45.0% | |
| TATGACCGGGCTTGTGTAAT+AGG | + | chr7_4:54219893-54219912 | Msa1163140:intron | 45.0% | |
| CTCAAATAACCAGCTAAGGG+AGG | - | chr7_4:54219980-54219999 | None:intergenic | 45.0% | |
| ATGTCTGACACCCATGACAT+AGG | - | chr7_4:54220005-54220024 | None:intergenic | 45.0% | |
| ! | GCATGTACTTCAGGTTCTTC+AGG | + | chr7_4:54220147-54220166 | Msa1163140:intron | 45.0% |
| TGATGGTTGACTGCTGTATG+AGG | + | chr7_4:54220194-54220213 | Msa1163140:CDS | 45.0% | |
| CTGTATGAGGCGAGATTATC+TGG | + | chr7_4:54220207-54220226 | Msa1163140:CDS | 45.0% | |
| CGATAGCCAGCCTGATATAA+TGG | - | chr7_4:54220243-54220262 | None:intergenic | 45.0% | |
| ATAGTAACACCGATAGGCCA+GGG | - | chr7_4:54220274-54220293 | None:intergenic | 45.0% | |
| CCAACCATAGTAACACCGAT+AGG | - | chr7_4:54220280-54220299 | None:intergenic | 45.0% | |
| !! | CCTATCGGTGTTACTATGGT+TGG | + | chr7_4:54220277-54220296 | Msa1163140:CDS | 45.0% |
| ! | ACTGCTTTAGATGGCAGTGT+CGG | - | chr7_4:54220430-54220449 | None:intergenic | 45.0% |
| GCAGAAGAGAGATTTAGTGG+GGG | + | chr7_4:54220496-54220515 | Msa1163140:CDS | 45.0% | |
| GAGAATCCGTGCAATGTATG+AGG | + | chr7_4:54220625-54220644 | Msa1163140:three_prime_UTR | 45.0% | |
| GCGAAACTTAAAACCAAGGG+GGG | - | chr7_4:54220684-54220703 | None:intergenic | 45.0% | |
| TGTTCGATTTCCACCCCATT+TGG | + | chr7_4:54220837-54220856 | Msa1163140:three_prime_UTR | 45.0% | |
| TGGGGTAACAAGACCAAATG+GGG | - | chr7_4:54220853-54220872 | None:intergenic | 45.0% | |
| CAATCCCTAGCCGAAGAAAC+CGG | + | chr7_4:54216556-54216575 | Msa1163140:CDS | 50.0% | |
| !! | TTTCTTGCCGCCGGTTTCTT+CGG | - | chr7_4:54216569-54216588 | None:intergenic | 50.0% |
| TGAGGTTGTTACGGTGGAGA+CGG | - | chr7_4:54216701-54216720 | None:intergenic | 50.0% | |
| !! | GGTTGATGAGGTTGTTACGG+TGG | - | chr7_4:54216707-54216726 | None:intergenic | 50.0% |
| !! | CTATGTTTTGTTCGTCGGGG+AGG | - | chr7_4:54216777-54216796 | None:intergenic | 50.0% |
| ! | CGGCGGATGACTTCTTGTTT+AGG | - | chr7_4:54216814-54216833 | None:intergenic | 50.0% |
| TCTTCGCCGAATAACGTCAC+AGG | - | chr7_4:54216856-54216875 | None:intergenic | 50.0% | |
| ACGATGATGCGAGACTCGAT+CGG | + | chr7_4:54216875-54216894 | Msa1163140:CDS | 50.0% | |
| TGCGTGATATTGCGGAGTTG+AGG | + | chr7_4:54216971-54216990 | Msa1163140:CDS | 50.0% | |
| GTTGAGGAAGAGGCAGAAGA+CGG | + | chr7_4:54216987-54217006 | Msa1163140:CDS | 50.0% | |
| TTGAGGAAGAGGCAGAAGAC+GGG | + | chr7_4:54216988-54217007 | Msa1163140:CDS | 50.0% | |
| !! | GATTGTGGTGGATCTAGTGG+TGG | + | chr7_4:54217096-54217115 | Msa1163140:CDS | 50.0% |
| GAAACAGGAGTTGCGTGAGA+TGG | + | chr7_4:54217218-54217237 | Msa1163140:CDS | 50.0% | |
| GACGGCTAAAGGGAAGTCTA+TGG | + | chr7_4:54217257-54217276 | Msa1163140:CDS | 50.0% | |
| GAGATGTAGAACTGGGCAAC+TGG | + | chr7_4:54219397-54219416 | Msa1163140:intron | 50.0% | |
| GGATGACTCAGTCTATGACC+GGG | + | chr7_4:54219880-54219899 | Msa1163140:intron | 50.0% | |
| GCATTCTAACCTCCCTTAGC+TGG | + | chr7_4:54219968-54219987 | Msa1163140:intron | 50.0% | |
| GGATGTGGTGCATGTACTTC+AGG | + | chr7_4:54220138-54220157 | Msa1163140:intron | 50.0% | |
| TCTTCAGGATGACATTCGGC+AGG | + | chr7_4:54220162-54220181 | Msa1163140:CDS | 50.0% | |
| TCGGCAGGCACTAATGTTGA+TGG | + | chr7_4:54220177-54220196 | Msa1163140:CDS | 50.0% | |
| GCGAGATTATCTGGCTGCAA+TGG | + | chr7_4:54220216-54220235 | Msa1163140:CDS | 50.0% | |
| CATAGTAACACCGATAGGCC+AGG | - | chr7_4:54220275-54220294 | None:intergenic | 50.0% | |
| !! | CTGGCCTATCGGTGTTACTA+TGG | + | chr7_4:54220273-54220292 | Msa1163140:CDS | 50.0% |
| ! | CTGCTTTAGATGGCAGTGTC+GGG | - | chr7_4:54220429-54220448 | None:intergenic | 50.0% |
| AGTCAGTTCAGGCGCAGTTT+CGG | + | chr7_4:54220726-54220745 | Msa1163140:three_prime_UTR | 50.0% | |
| GGTAACAAGACCAAATGGGG+TGG | - | chr7_4:54220850-54220869 | None:intergenic | 50.0% | |
| ! | CCATCTAGGGTTTCGGACGA+CGG | - | chr7_4:54216504-54216523 | None:intergenic | 55.0% |
| CGGTTTCTTCGGCTAGGGAT+TGG | - | chr7_4:54216558-54216577 | None:intergenic | 55.0% | |
| TGTTACGGTGGAGACGGTGT+CGG | - | chr7_4:54216695-54216714 | None:intergenic | 55.0% | |
| !! | GGAGGAAGCGTTGGTTGATG+AGG | - | chr7_4:54216719-54216738 | None:intergenic | 55.0% |
| AAGAAGTCATCCGCCGTCTC+CGG | + | chr7_4:54216818-54216837 | Msa1163140:CDS | 55.0% | |
| GTTTGAGAAACCGGAGACGG+CGG | - | chr7_4:54216831-54216850 | None:intergenic | 55.0% | |
| TGAGGAAGAGGCAGAAGACG+GGG | + | chr7_4:54216989-54217008 | Msa1163140:CDS | 55.0% | |
| GAGTGATAGGAAGCGGCAGA+AGG | + | chr7_4:54217017-54217036 | Msa1163140:CDS | 55.0% | |
| TGATAGGAAGCGGCAGAAGG+CGG | + | chr7_4:54217020-54217039 | Msa1163140:CDS | 55.0% | |
| ACAGGAGTTGCGTGAGATGG+CGG | + | chr7_4:54217221-54217240 | Msa1163140:CDS | 55.0% | |
| GTATCGCGCACACTGCTTGA+AGG | - | chr7_4:54217289-54217308 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr7_4:54219190-54219209 | None:intergenic | 55.0% | |
| TGGGCAACTGGCGAACATCT+GGG | + | chr7_4:54219409-54219428 | Msa1163140:intron | 55.0% | |
| CCAAGAGGGCCACTCTAACA+AGG | - | chr7_4:54219644-54219663 | None:intergenic | 55.0% | |
| CCTTGTTAGAGTGGCCCTCT+TGG | + | chr7_4:54219641-54219660 | Msa1163140:intron | 55.0% | |
| GCAATCAGTCGTCTGAGGAG+AGG | + | chr7_4:54220518-54220537 | Msa1163140:CDS | 55.0% | |
| AGTCGTCTGAGGAGAGGCTT+AGG | + | chr7_4:54220524-54220543 | Msa1163140:CDS | 55.0% | |
| ! | TAAAACCAAGGGGGGCGCAA+GGG | - | chr7_4:54220676-54220695 | None:intergenic | 55.0% |
| ! | TTAAAACCAAGGGGGGCGCA+AGG | - | chr7_4:54220677-54220696 | None:intergenic | 55.0% |
| TAGGGTTTCGGACGACGGTG+CGG | - | chr7_4:54216499-54216518 | None:intergenic | 60.0% | |
| CCGTCGTCCGAAACCCTAGA+TGG | + | chr7_4:54216501-54216520 | Msa1163140:exon | 60.0% | |
| TCCCTAGCCGAAGAAACCGG+CGG | + | chr7_4:54216559-54216578 | Msa1163140:CDS | 60.0% | |
| !! | GGAAGCGCTGGATGAAGCAG+CGG | - | chr7_4:54216755-54216774 | None:intergenic | 60.0% |
| !! | GAGGATGGTGCTGCTGAGGA+TGG | + | chr7_4:54217042-54217061 | Msa1163140:CDS | 60.0% |
| !! | GGTGCTGCTGAGGATGGTGA+TGG | + | chr7_4:54217048-54217067 | Msa1163140:CDS | 60.0% |
| !! | GCTGCTGAGGATGGTGATGG+TGG | + | chr7_4:54217051-54217070 | Msa1163140:CDS | 60.0% |
| !! | GAGGATGGTGATGGTGGTGC+TGG | + | chr7_4:54217057-54217076 | Msa1163140:CDS | 60.0% |
| !! | GTTGCGTGAGATGGCGGAGA+CGG | + | chr7_4:54217227-54217246 | Msa1163140:CDS | 60.0% |
| !! | AGATGGCGGAGACGGAGAAG+CGG | + | chr7_4:54217235-54217254 | Msa1163140:CDS | 60.0% |
| ACGGAGAAGCGGACGGCTAA+AGG | + | chr7_4:54217246-54217265 | Msa1163140:CDS | 60.0% | |
| CGGAGAAGCGGACGGCTAAA+GGG | + | chr7_4:54217247-54217266 | Msa1163140:CDS | 60.0% | |
| CGCTGGAGAGAACTGCAGAC+CGG | + | chr7_4:54218041-54218060 | Msa1163140:intron | 60.0% | |
| CTGGGCAACTGGCGAACATC+TGG | + | chr7_4:54219408-54219427 | Msa1163140:intron | 60.0% | |
| GGGCAACTGGCGAACATCTG+GGG | + | chr7_4:54219410-54219429 | Msa1163140:intron | 60.0% | |
| GGCAACTGGCGAACATCTGG+GGG | + | chr7_4:54219411-54219430 | Msa1163140:intron | 60.0% | |
| TGGCTATCGGGAATGCTCCC+TGG | + | chr7_4:54220254-54220273 | Msa1163140:CDS | 60.0% | |
| GGGAATGCTCCCTGGCCTAT+CGG | + | chr7_4:54220262-54220281 | Msa1163140:CDS | 60.0% | |
| TGGGGGCAATCAGTCGTCTG+AGG | + | chr7_4:54220513-54220532 | Msa1163140:CDS | 60.0% | |
| !! | GCCGCCGGTTTCTTCGGCTA+GGG | - | chr7_4:54216563-54216582 | None:intergenic | 65.0% |
| !! | TGCCGCCGGTTTCTTCGGCT+AGG | - | chr7_4:54216564-54216583 | None:intergenic | 65.0% |
| ! | TACGGTGGAGACGGTGTCGG+AGG | - | chr7_4:54216692-54216711 | None:intergenic | 65.0% |
| !! | GGTGACGGAGGAGGAAGCGT+TGG | - | chr7_4:54216728-54216747 | None:intergenic | 65.0% |
| TGAAGCAGCGGCGGAGGTGA+CGG | - | chr7_4:54216743-54216762 | None:intergenic | 65.0% | |
| ! | AGCGCTGGATGAAGCAGCGG+CGG | - | chr7_4:54216752-54216771 | None:intergenic | 65.0% |
| TAGGAAGCGGCAGAAGGCGG+AGG | + | chr7_4:54217023-54217042 | Msa1163140:CDS | 65.0% | |
| AAGCGGCAGAAGGCGGAGGA+TGG | + | chr7_4:54217027-54217046 | Msa1163140:CDS | 65.0% | |
| ACTGGCGAACATCTGGGGGC+AGG | + | chr7_4:54219415-54219434 | Msa1163140:intron | 65.0% | |
| CTGGCGAACATCTGGGGGCA+GGG | + | chr7_4:54219416-54219435 | Msa1163140:intron | 65.0% | |
| TGGCGAACATCTGGGGGCAG+GGG | + | chr7_4:54219417-54219436 | Msa1163140:intron | 65.0% | |
| ! | GCAGTGTCGGGTAACGCCGT+TGG | - | chr7_4:54220417-54220436 | None:intergenic | 65.0% |
| TTCGGACGACGGTGCGGTGG+TGG | - | chr7_4:54216493-54216512 | None:intergenic | 70.0% | |
| GGTTTCGGACGACGGTGCGG+TGG | - | chr7_4:54216496-54216515 | None:intergenic | 70.0% | |
| ! | GGTGGAGACGGTGTCGGAGG+TGG | - | chr7_4:54216689-54216708 | None:intergenic | 70.0% |
| GCTGGATGAAGCAGCGGCGG+AGG | - | chr7_4:54216749-54216768 | None:intergenic | 70.0% | |
| ! | TTCGTCGGGGAGGGAAGCGC+TGG | - | chr7_4:54216767-54216786 | None:intergenic | 70.0% |
| !! | GGCGGAGGATGGTGCTGCTG+AGG | + | chr7_4:54217038-54217057 | Msa1163140:CDS | 70.0% |
| GGCGGAGACGGAGAAGCGGA+CGG | + | chr7_4:54217239-54217258 | Msa1163140:CDS | 70.0% | |
| ! | GGACGACGGTGCGGTGGTGG+TGG | - | chr7_4:54216490-54216509 | None:intergenic | 75.0% |
| !! | AGCGGCGGAGGTGACGGAGG+AGG | - | chr7_4:54216737-54216756 | None:intergenic | 75.0% |
| ! | AGCAGCGGCGGAGGTGACGG+AGG | - | chr7_4:54216740-54216759 | None:intergenic | 75.0% |
| TGCAGCCCTTGCGCCCCCCT+TGG | + | chr7_4:54220668-54220687 | Msa1163140:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 54216413 | 54220906 | 54216413 | ID=Msa1163140;Name=Msa1163140 |
| chr7_4 | mRNA | 54216413 | 54220906 | 54216413 | ID=Msa1163140-mRNA-1;Parent=Msa1163140;Name=Msa1163140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107|1|1|1|1|1|2|333|411 |
| chr7_4 | exon | 54216413 | 54217341 | 54216413 | ID=Msa1163140-mRNA-1:exon:15715;Parent=Msa1163140-mRNA-1 |
| chr7_4 | exon | 54220160 | 54220906 | 54220160 | ID=Msa1163140-mRNA-1:exon:15716;Parent=Msa1163140-mRNA-1 |
| chr7_4 | five_prime_UTR | 54216413 | 54216519 | 54216413 | ID=Msa1163140-mRNA-1:five_prime_utr;Parent=Msa1163140-mRNA-1 |
| chr7_4 | CDS | 54216520 | 54217341 | 54216520 | ID=Msa1163140-mRNA-1:cds;Parent=Msa1163140-mRNA-1 |
| chr7_4 | CDS | 54220160 | 54220573 | 54220160 | ID=Msa1163140-mRNA-1:cds;Parent=Msa1163140-mRNA-1 |
| chr7_4 | three_prime_UTR | 54220574 | 54220906 | 54220574 | ID=Msa1163140-mRNA-1:three_prime_utr;Parent=Msa1163140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
