AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700410 MtrunA17_Chr8g0377461 98.148 54 1 0 1 54 1 54 5.44e-33 108
Msa0700410 MtrunA17_Chr2g0290301 53.704 54 18 1 1 54 1 47 9.39e-15 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700410 AT1G27350.1 83.333 54 9 0 1 54 1 54 2.53e-27 94.4
Msa0700410 AT1G27330.1 83.333 54 9 0 1 54 1 54 2.53e-27 94.4

Find 42 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTAAATTCAACAAAATT+AGG 0.206186 4_4:+71412948 None:intergenic
TCAACAAAATTAGGCATATT+AGG 0.209880 4_4:+71412957 Msa0700410:five_prime_UTR
CCTTTCTTAACAGTTGTTTC+TGG 0.223249 4_4:-71413653 None:intergenic
ATGATTGATTTGTAGGATAA+TGG 0.270299 4_4:-71413155 None:intergenic
TTCTTCGTCTTTGTTGTCAT+TGG 0.272950 4_4:+71413710 Msa0700410:CDS
ACGAACCATGATTGATTTGT+AGG 0.306992 4_4:-71413162 None:intergenic
ACGAAGAAACCAAGCAAAAC+GGG 0.342450 4_4:-71413695 None:intergenic
ATCAAAACATGAACAGGAAC+TGG 0.348130 4_4:-71414786 None:intergenic
CAGCTCTCTTTCAGATAATC+AGG 0.365308 4_4:+71414651 Msa0700410:intron
CCAAGCAAAACGGGGCCAAC+AGG 0.391773 4_4:-71413686 None:intergenic
GGGATTAGTCATCGTATAAA+TGG 0.392005 4_4:+71414938 Msa0700410:three_prime_UTR
AACTTCATCAAAACATGAAC+AGG 0.410889 4_4:-71414792 None:intergenic
GACGAAGAAACCAAGCAAAA+CGG 0.413008 4_4:-71413696 None:intergenic
TGAACGGTGATCGTTGTTAC+CGG 0.416731 4_4:-71413022 None:intergenic
CATCAAAGCGCCTTGCAGTT+AGG 0.424154 4_4:+71413585 Msa0700410:CDS
GGCATAATGGAGCTTTGAGT+TGG 0.445961 4_4:+71414694 Msa0700410:exon
CGAGTGGAGGCATGGCATAA+TGG 0.448620 4_4:+71414681 Msa0700410:CDS
AAAAGTTGGAAATAAATAAC+CGG 0.474202 4_4:+71413003 Msa0700410:five_prime_UTR
TATGTAAAATTAAACAAAAG+AGG 0.501977 4_4:-71414853 None:intergenic
AATTAGGCATATTAGGTAAG+TGG 0.504893 4_4:+71412964 Msa0700410:five_prime_UTR
CCAGAAACAACTGTTAAGAA+AGG 0.524644 4_4:+71413653 Msa0700410:CDS
ATTATCCTACAAATCAATCA+TGG 0.554540 4_4:+71413157 Msa0700410:exon
TAAGGAGGACAACATTGAAA+GGG 0.568218 4_4:-71413747 None:intergenic
ATAAGGAGGACAACATTGAA+AGG 0.568330 4_4:-71413748 None:intergenic
AAAGGAAATGACTATCCTGT+TGG 0.571369 4_4:+71413671 Msa0700410:CDS
GACAGCAACGAGTGGAGGCA+TGG 0.571659 4_4:+71414673 Msa0700410:CDS
AAAGCGCCTTGCAGTTAGGA+AGG 0.575086 4_4:+71413589 Msa0700410:CDS
TTTGTAGGATAATGGATCGC+CGG 0.595314 4_4:-71413147 None:intergenic
ACCTCGGAGAGAGTCACTGC+CGG 0.598531 4_4:+71413071 Msa0700410:five_prime_UTR
TCAAAACATGAACAGGAACT+GGG 0.600163 4_4:-71414785 None:intergenic
ATCAGGACAGCAACGAGTGG+AGG 0.608196 4_4:+71414668 Msa0700410:CDS
CGAAGAAACCAAGCAAAACG+GGG 0.617394 4_4:-71413694 None:intergenic
TCCGGCAGTGACTCTCTCCG+AGG 0.626564 4_4:-71413072 None:intergenic
GAAATCTCTAAATAAAACCT+CGG 0.627274 4_4:+71413055 Msa0700410:five_prime_UTR
TCTCAACCTTCCTAACTGCA+AGG 0.647474 4_4:-71413595 None:intergenic
GATTTCTGAATATCTGTGAA+CGG 0.648636 4_4:-71413038 None:intergenic
ATTGATGCTGTGTAATCGTG+AGG 0.656067 4_4:+71414917 Msa0700410:three_prime_UTR
ATAATCAGGACAGCAACGAG+TGG 0.658965 4_4:+71414665 Msa0700410:CDS
GTAGGATAATGGATCGCCGG+TGG 0.665340 4_4:-71413144 None:intergenic
AACGCCGGAAAATTGAAAGA+CGG 0.693395 4_4:-71413109 None:intergenic
GCCGGAAAATTGAAAGACGG+TGG 0.699767 4_4:-71413106 None:intergenic
TTGATGCTGTGTAATCGTGA+GGG 0.713573 4_4:+71414918 Msa0700410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAAAAAAATTACAG+GGG - chr4_4:71414099-71414118 None:intergenic 10.0%
!! GTAAATAAAAAAAAATTACA+GGG - chr4_4:71414100-71414119 None:intergenic 10.0%
!! TAAATAAAAAAAAATTACAG+GGG - chr4_4:71414099-71414118 None:intergenic 10.0%
!! GTAAATAAAAAAAAATTACA+GGG - chr4_4:71414100-71414119 None:intergenic 10.0%
!! TCAATTTCAAAACAAAAATT+CGG - chr4_4:71413312-71413331 None:intergenic 15.0%
!! ATCAGAAATTTATCAAAATT+AGG + chr4_4:71413375-71413394 Msa0700410:intron 15.0%
!!! TGTTAAATTTTGATTGAATT+TGG + chr4_4:71413497-71413516 Msa0700410:intron 15.0%
!! AAAAATTAGTAAAACACATA+AGG - chr4_4:71413768-71413787 None:intergenic 15.0%
!! CAATATTTCAAAAATTGAAT+CGG - chr4_4:71414018-71414037 None:intergenic 15.0%
!!! AATTTTTGAAATATTGTTGT+GGG + chr4_4:71414022-71414041 Msa0700410:intron 15.0%
!! AATATAATATAGGTCATTTA+TGG + chr4_4:71414068-71414087 Msa0700410:intron 15.0%
!! AAATAAAAAAAAATTACAGG+GGG - chr4_4:71414098-71414117 None:intergenic 15.0%
!! GGTAAATAAAAAAAAATTAC+AGG - chr4_4:71414101-71414120 None:intergenic 15.0%
!!! AAGAAATTTTTGTTTTTGTT+TGG - chr4_4:71414163-71414182 None:intergenic 15.0%
!!! TATATTAATGTGTTTGAAAT+TGG - chr4_4:71414231-71414250 None:intergenic 15.0%
!!! ATAATTTTCAATTCAATTCA+AGG - chr4_4:71414314-71414333 None:intergenic 15.0%
!! TATGTAAAATTAAACAAAAG+AGG - chr4_4:71414856-71414875 None:intergenic 15.0%
!! TCAATTTCAAAACAAAAATT+CGG - chr4_4:71413312-71413331 None:intergenic 15.0%
!! ATCAGAAATTTATCAAAATT+AGG + chr4_4:71413375-71413394 Msa0700410:intron 15.0%
!!! TGTTAAATTTTGATTGAATT+TGG + chr4_4:71413497-71413516 Msa0700410:intron 15.0%
!! AAAAATTAGTAAAACACATA+AGG - chr4_4:71413768-71413787 None:intergenic 15.0%
!! CAATATTTCAAAAATTGAAT+CGG - chr4_4:71414018-71414037 None:intergenic 15.0%
!!! AATTTTTGAAATATTGTTGT+GGG + chr4_4:71414022-71414041 Msa0700410:intron 15.0%
!! AATATAATATAGGTCATTTA+TGG + chr4_4:71414068-71414087 Msa0700410:intron 15.0%
!! AAATAAAAAAAAATTACAGG+GGG - chr4_4:71414098-71414117 None:intergenic 15.0%
!! GGTAAATAAAAAAAAATTAC+AGG - chr4_4:71414101-71414120 None:intergenic 15.0%
!!! AAGAAATTTTTGTTTTTGTT+TGG - chr4_4:71414163-71414182 None:intergenic 15.0%
!!! TATATTAATGTGTTTGAAAT+TGG - chr4_4:71414231-71414250 None:intergenic 15.0%
!!! ATAATTTTCAATTCAATTCA+AGG - chr4_4:71414314-71414333 None:intergenic 15.0%
!! TATGTAAAATTAAACAAAAG+AGG - chr4_4:71414856-71414875 None:intergenic 15.0%
!! AAAAGTTGGAAATAAATAAC+CGG + chr4_4:71413003-71413022 Msa0700410:five_prime_UTR 20.0%
!! TATTGTTTGTGTGATTTATT+TGG + chr4_4:71413837-71413856 Msa0700410:intron 20.0%
!!! CAATTTTTGAAATATTGTTG+TGG + chr4_4:71414021-71414040 Msa0700410:intron 20.0%
!!! ATTTTTGAAATATTGTTGTG+GGG + chr4_4:71414023-71414042 Msa0700410:intron 20.0%
!! AAAACAAAAAATTTGTACAG+GGG - chr4_4:71414122-71414141 None:intergenic 20.0%
!! CAAAACAAAAAATTTGTACA+GGG - chr4_4:71414123-71414142 None:intergenic 20.0%
!! TCAAAACAAAAAATTTGTAC+AGG - chr4_4:71414124-71414143 None:intergenic 20.0%
!! AAAAGTTGGAAATAAATAAC+CGG + chr4_4:71413003-71413022 Msa0700410:five_prime_UTR 20.0%
!! TATTGTTTGTGTGATTTATT+TGG + chr4_4:71413837-71413856 Msa0700410:intron 20.0%
!!! CAATTTTTGAAATATTGTTG+TGG + chr4_4:71414021-71414040 Msa0700410:intron 20.0%
!!! ATTTTTGAAATATTGTTGTG+GGG + chr4_4:71414023-71414042 Msa0700410:intron 20.0%
!! AAAACAAAAAATTTGTACAG+GGG - chr4_4:71414122-71414141 None:intergenic 20.0%
!! CAAAACAAAAAATTTGTACA+GGG - chr4_4:71414123-71414142 None:intergenic 20.0%
!! TCAAAACAAAAAATTTGTAC+AGG - chr4_4:71414124-71414143 None:intergenic 20.0%
! TCAACAAAATTAGGCATATT+AGG + chr4_4:71412957-71412976 Msa0700410:five_prime_UTR 25.0%
! GAAATCTCTAAATAAAACCT+CGG + chr4_4:71413055-71413074 Msa0700410:five_prime_UTR 25.0%
!!! ATGATTGATTTGTAGGATAA+TGG - chr4_4:71413158-71413177 None:intergenic 25.0%
! ATTATCCTACAAATCAATCA+TGG + chr4_4:71413157-71413176 Msa0700410:exon 25.0%
!! GTCAAATTTTATGTAGCTTA+TGG + chr4_4:71413397-71413416 Msa0700410:intron 25.0%
!!! TTACATTGATTTTCAGCTTA+TGG + chr4_4:71413431-71413450 Msa0700410:intron 25.0%
! TGTTGAATGAAATTGAGATT+TGG + chr4_4:71413528-71413547 Msa0700410:intron 25.0%
!!! GAAATTGAGATTTGGAATTT+TGG + chr4_4:71413536-71413555 Msa0700410:intron 25.0%
! GAGAAAAATATCACAAAAAG+AGG + chr4_4:71413623-71413642 Msa0700410:CDS 25.0%
! AATTAGTAAAACACATAAGG+AGG - chr4_4:71413765-71413784 None:intergenic 25.0%
! TACCCTCTGTAATATAATAT+AGG + chr4_4:71414058-71414077 Msa0700410:intron 25.0%
! GACCTATATTATATTACAGA+GGG - chr4_4:71414063-71414082 None:intergenic 25.0%
! TGACCTATATTATATTACAG+AGG - chr4_4:71414064-71414083 None:intergenic 25.0%
! CTGAGTACATAATTTATTCT+CGG + chr4_4:71414287-71414306 Msa0700410:intron 25.0%
! TGAGTACATAATTTATTCTC+GGG + chr4_4:71414288-71414307 Msa0700410:intron 25.0%
! GTATATCAAACATTTGATCA+CGG - chr4_4:71414497-71414516 None:intergenic 25.0%
!! GTATAGTCATATTTTCTACA+GGG - chr4_4:71414741-71414760 None:intergenic 25.0%
!! AGTATAGTCATATTTTCTAC+AGG - chr4_4:71414742-71414761 None:intergenic 25.0%
!! TATACTTTTCTACATGTACT+TGG + chr4_4:71414756-71414775 Msa0700410:three_prime_UTR 25.0%
!!! CATGTTTTGATGAAGTTTTA+AGG + chr4_4:71414798-71414817 Msa0700410:three_prime_UTR 25.0%
! TCAACAAAATTAGGCATATT+AGG + chr4_4:71412957-71412976 Msa0700410:five_prime_UTR 25.0%
! GAAATCTCTAAATAAAACCT+CGG + chr4_4:71413055-71413074 Msa0700410:five_prime_UTR 25.0%
!!! ATGATTGATTTGTAGGATAA+TGG - chr4_4:71413158-71413177 None:intergenic 25.0%
! ATTATCCTACAAATCAATCA+TGG + chr4_4:71413157-71413176 Msa0700410:exon 25.0%
!! GTCAAATTTTATGTAGCTTA+TGG + chr4_4:71413397-71413416 Msa0700410:intron 25.0%
!!! TTACATTGATTTTCAGCTTA+TGG + chr4_4:71413431-71413450 Msa0700410:intron 25.0%
! TGTTGAATGAAATTGAGATT+TGG + chr4_4:71413528-71413547 Msa0700410:intron 25.0%
!!! GAAATTGAGATTTGGAATTT+TGG + chr4_4:71413536-71413555 Msa0700410:intron 25.0%
! GAGAAAAATATCACAAAAAG+AGG + chr4_4:71413623-71413642 Msa0700410:CDS 25.0%
! AATTAGTAAAACACATAAGG+AGG - chr4_4:71413765-71413784 None:intergenic 25.0%
! TACCCTCTGTAATATAATAT+AGG + chr4_4:71414058-71414077 Msa0700410:intron 25.0%
! GACCTATATTATATTACAGA+GGG - chr4_4:71414063-71414082 None:intergenic 25.0%
! TGACCTATATTATATTACAG+AGG - chr4_4:71414064-71414083 None:intergenic 25.0%
! CTGAGTACATAATTTATTCT+CGG + chr4_4:71414287-71414306 Msa0700410:intron 25.0%
! TGAGTACATAATTTATTCTC+GGG + chr4_4:71414288-71414307 Msa0700410:intron 25.0%
! GTATATCAAACATTTGATCA+CGG - chr4_4:71414497-71414516 None:intergenic 25.0%
!! GTATAGTCATATTTTCTACA+GGG - chr4_4:71414741-71414760 None:intergenic 25.0%
!! AGTATAGTCATATTTTCTAC+AGG - chr4_4:71414742-71414761 None:intergenic 25.0%
!! TATACTTTTCTACATGTACT+TGG + chr4_4:71414756-71414775 Msa0700410:three_prime_UTR 25.0%
!!! CATGTTTTGATGAAGTTTTA+AGG + chr4_4:71414798-71414817 Msa0700410:three_prime_UTR 25.0%
AATTAGGCATATTAGGTAAG+TGG + chr4_4:71412964-71412983 Msa0700410:five_prime_UTR 30.0%
GATTTCTGAATATCTGTGAA+CGG - chr4_4:71413041-71413060 None:intergenic 30.0%
GTAGAATCATGACAAAAACA+AGG - chr4_4:71413268-71413287 None:intergenic 30.0%
!! ATTGAGATTTGGAATTTTGG+TGG + chr4_4:71413539-71413558 Msa0700410:intron 30.0%
TCCTAATTCTTGTGATGAAT+TGG + chr4_4:71413807-71413826 Msa0700410:intron 30.0%
CCTAATTCTTGTGATGAATT+GGG + chr4_4:71413808-71413827 Msa0700410:intron 30.0%
ACTGAACCGATAGTTAAAAT+CGG + chr4_4:71413887-71413906 Msa0700410:intron 30.0%
AATTAACAATAGTTCAGCTC+TGG - chr4_4:71413918-71413937 None:intergenic 30.0%
GAGCTGAACTATTGTTAATT+CGG + chr4_4:71413918-71413937 Msa0700410:intron 30.0%
TGTTAATTCGGATATTTGAG+AGG + chr4_4:71413930-71413949 Msa0700410:intron 30.0%
!! TGTTTTTGTTTGGCCTATTA+GGG - chr4_4:71414153-71414172 None:intergenic 30.0%
!!! TTGTTTTTGTTTGGCCTATT+AGG - chr4_4:71414154-71414173 None:intergenic 30.0%
CGAGAATAAATTATGTACTC+AGG - chr4_4:71414289-71414308 None:intergenic 30.0%
TTAACAATTCCCTATGGAAT+TGG + chr4_4:71414467-71414486 Msa0700410:intron 30.0%
ATGTTTGATATACCTTCTCA+AGG + chr4_4:71414504-71414523 Msa0700410:intron 30.0%
AACTTCATCAAAACATGAAC+AGG - chr4_4:71414795-71414814 None:intergenic 30.0%
AATTAGGCATATTAGGTAAG+TGG + chr4_4:71412964-71412983 Msa0700410:five_prime_UTR 30.0%
GATTTCTGAATATCTGTGAA+CGG - chr4_4:71413041-71413060 None:intergenic 30.0%
GTAGAATCATGACAAAAACA+AGG - chr4_4:71413268-71413287 None:intergenic 30.0%
!! ATTGAGATTTGGAATTTTGG+TGG + chr4_4:71413539-71413558 Msa0700410:intron 30.0%
TCCTAATTCTTGTGATGAAT+TGG + chr4_4:71413807-71413826 Msa0700410:intron 30.0%
CCTAATTCTTGTGATGAATT+GGG + chr4_4:71413808-71413827 Msa0700410:intron 30.0%
ACTGAACCGATAGTTAAAAT+CGG + chr4_4:71413887-71413906 Msa0700410:intron 30.0%
AATTAACAATAGTTCAGCTC+TGG - chr4_4:71413918-71413937 None:intergenic 30.0%
GAGCTGAACTATTGTTAATT+CGG + chr4_4:71413918-71413937 Msa0700410:intron 30.0%
TGTTAATTCGGATATTTGAG+AGG + chr4_4:71413930-71413949 Msa0700410:intron 30.0%
!! TGTTTTTGTTTGGCCTATTA+GGG - chr4_4:71414153-71414172 None:intergenic 30.0%
!!! TTGTTTTTGTTTGGCCTATT+AGG - chr4_4:71414154-71414173 None:intergenic 30.0%
CGAGAATAAATTATGTACTC+AGG - chr4_4:71414289-71414308 None:intergenic 30.0%
TTAACAATTCCCTATGGAAT+TGG + chr4_4:71414467-71414486 Msa0700410:intron 30.0%
ATGTTTGATATACCTTCTCA+AGG + chr4_4:71414504-71414523 Msa0700410:intron 30.0%
AACTTCATCAAAACATGAAC+AGG - chr4_4:71414795-71414814 None:intergenic 30.0%
!! ACGAACCATGATTGATTTGT+AGG - chr4_4:71413165-71413184 None:intergenic 35.0%
GAATGCAAGAAATAGAAGAG+AGG - chr4_4:71413195-71413214 None:intergenic 35.0%
! CCTTTCTTAACAGTTGTTTC+TGG - chr4_4:71413656-71413675 None:intergenic 35.0%
CCAGAAACAACTGTTAAGAA+AGG + chr4_4:71413653-71413672 Msa0700410:CDS 35.0%
AAAGGAAATGACTATCCTGT+TGG + chr4_4:71413671-71413690 Msa0700410:CDS 35.0%
! TTCTTCGTCTTTGTTGTCAT+TGG + chr4_4:71413710-71413729 Msa0700410:CDS 35.0%
TAAGGAGGACAACATTGAAA+GGG - chr4_4:71413750-71413769 None:intergenic 35.0%
ATAAGGAGGACAACATTGAA+AGG - chr4_4:71413751-71413770 None:intergenic 35.0%
CCCAATTCATCACAAGAATT+AGG - chr4_4:71413811-71413830 None:intergenic 35.0%
!!! GCTCAACCGATTTTAACTAT+CGG - chr4_4:71413896-71413915 None:intergenic 35.0%
!! GGTTCAATCGTTGTTTTGTT+TGG + chr4_4:71413951-71413970 Msa0700410:intron 35.0%
TCAAGCTGTTGAACTATTTG+AGG + chr4_4:71413975-71413994 Msa0700410:intron 35.0%
! TTGAACTATTTGAGGTCTTG+TGG + chr4_4:71413983-71414002 Msa0700410:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + chr4_4:71414137-71414156 Msa0700410:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr4_4:71414151-71414170 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr4_4:71414152-71414171 None:intergenic 35.0%
AATCGTATTATAGTGCAGAG+AGG + chr4_4:71414414-71414433 Msa0700410:intron 35.0%
ATCGTATTATAGTGCAGAGA+GGG + chr4_4:71414415-71414434 Msa0700410:intron 35.0%
AGGGATTTAACAATTCCCTA+TGG + chr4_4:71414461-71414480 Msa0700410:intron 35.0%
GATATACCTTCTCAAGGATT+AGG + chr4_4:71414510-71414529 Msa0700410:intron 35.0%
TATCATCCTAATCCTTGAGA+AGG - chr4_4:71414519-71414538 None:intergenic 35.0%
ATGAACATGCTATGGAAGAA+AGG - chr4_4:71414548-71414567 None:intergenic 35.0%
TCAAAACATGAACAGGAACT+GGG - chr4_4:71414788-71414807 None:intergenic 35.0%
ATCAAAACATGAACAGGAAC+TGG - chr4_4:71414789-71414808 None:intergenic 35.0%
!! GGGATTAGTCATCGTATAAA+TGG + chr4_4:71414938-71414957 Msa0700410:three_prime_UTR 35.0%
!! ACGAACCATGATTGATTTGT+AGG - chr4_4:71413165-71413184 None:intergenic 35.0%
GAATGCAAGAAATAGAAGAG+AGG - chr4_4:71413195-71413214 None:intergenic 35.0%
! CCTTTCTTAACAGTTGTTTC+TGG - chr4_4:71413656-71413675 None:intergenic 35.0%
CCAGAAACAACTGTTAAGAA+AGG + chr4_4:71413653-71413672 Msa0700410:CDS 35.0%
AAAGGAAATGACTATCCTGT+TGG + chr4_4:71413671-71413690 Msa0700410:CDS 35.0%
! TTCTTCGTCTTTGTTGTCAT+TGG + chr4_4:71413710-71413729 Msa0700410:CDS 35.0%
TAAGGAGGACAACATTGAAA+GGG - chr4_4:71413750-71413769 None:intergenic 35.0%
ATAAGGAGGACAACATTGAA+AGG - chr4_4:71413751-71413770 None:intergenic 35.0%
CCCAATTCATCACAAGAATT+AGG - chr4_4:71413811-71413830 None:intergenic 35.0%
!!! GCTCAACCGATTTTAACTAT+CGG - chr4_4:71413896-71413915 None:intergenic 35.0%
!! GGTTCAATCGTTGTTTTGTT+TGG + chr4_4:71413951-71413970 Msa0700410:intron 35.0%
TCAAGCTGTTGAACTATTTG+AGG + chr4_4:71413975-71413994 Msa0700410:intron 35.0%
! TTGAACTATTTGAGGTCTTG+TGG + chr4_4:71413983-71414002 Msa0700410:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + chr4_4:71414137-71414156 Msa0700410:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr4_4:71414151-71414170 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr4_4:71414152-71414171 None:intergenic 35.0%
AATCGTATTATAGTGCAGAG+AGG + chr4_4:71414414-71414433 Msa0700410:intron 35.0%
ATCGTATTATAGTGCAGAGA+GGG + chr4_4:71414415-71414434 Msa0700410:intron 35.0%
AGGGATTTAACAATTCCCTA+TGG + chr4_4:71414461-71414480 Msa0700410:intron 35.0%
GATATACCTTCTCAAGGATT+AGG + chr4_4:71414510-71414529 Msa0700410:intron 35.0%
TATCATCCTAATCCTTGAGA+AGG - chr4_4:71414519-71414538 None:intergenic 35.0%
ATGAACATGCTATGGAAGAA+AGG - chr4_4:71414548-71414567 None:intergenic 35.0%
TCAAAACATGAACAGGAACT+GGG - chr4_4:71414788-71414807 None:intergenic 35.0%
ATCAAAACATGAACAGGAAC+TGG - chr4_4:71414789-71414808 None:intergenic 35.0%
!! GGGATTAGTCATCGTATAAA+TGG + chr4_4:71414938-71414957 Msa0700410:three_prime_UTR 35.0%
! ACCACCGTCTTTCAATTTTC+CGG + chr4_4:71413105-71413124 Msa0700410:five_prime_UTR 40.0%
AACGCCGGAAAATTGAAAGA+CGG - chr4_4:71413112-71413131 None:intergenic 40.0%
!! TTTGTAGGATAATGGATCGC+CGG - chr4_4:71413150-71413169 None:intergenic 40.0%
ACGAAGAAACCAAGCAAAAC+GGG - chr4_4:71413698-71413717 None:intergenic 40.0%
GACGAAGAAACCAAGCAAAA+CGG - chr4_4:71413699-71413718 None:intergenic 40.0%
ATTATAGTGCAGAGAGGGAA+AGG + chr4_4:71414420-71414439 Msa0700410:intron 40.0%
TTATAGTGCAGAGAGGGAAA+GGG + chr4_4:71414421-71414440 Msa0700410:intron 40.0%
!! GGTAATGGGTAATGGTCAAA+GGG + chr4_4:71414442-71414461 Msa0700410:intron 40.0%
CATAGCTCATGAACATGCTA+TGG - chr4_4:71414556-71414575 None:intergenic 40.0%
CAGCTCTCTTTCAGATAATC+AGG + chr4_4:71414651-71414670 Msa0700410:intron 40.0%
ATTGATGCTGTGTAATCGTG+AGG + chr4_4:71414917-71414936 Msa0700410:three_prime_UTR 40.0%
TTGATGCTGTGTAATCGTGA+GGG + chr4_4:71414918-71414937 Msa0700410:three_prime_UTR 40.0%
! ACCACCGTCTTTCAATTTTC+CGG + chr4_4:71413105-71413124 Msa0700410:five_prime_UTR 40.0%
AACGCCGGAAAATTGAAAGA+CGG - chr4_4:71413112-71413131 None:intergenic 40.0%
!! TTTGTAGGATAATGGATCGC+CGG - chr4_4:71413150-71413169 None:intergenic 40.0%
ACGAAGAAACCAAGCAAAAC+GGG - chr4_4:71413698-71413717 None:intergenic 40.0%
GACGAAGAAACCAAGCAAAA+CGG - chr4_4:71413699-71413718 None:intergenic 40.0%
ATTATAGTGCAGAGAGGGAA+AGG + chr4_4:71414420-71414439 Msa0700410:intron 40.0%
TTATAGTGCAGAGAGGGAAA+GGG + chr4_4:71414421-71414440 Msa0700410:intron 40.0%
!! GGTAATGGGTAATGGTCAAA+GGG + chr4_4:71414442-71414461 Msa0700410:intron 40.0%
CATAGCTCATGAACATGCTA+TGG - chr4_4:71414556-71414575 None:intergenic 40.0%
CAGCTCTCTTTCAGATAATC+AGG + chr4_4:71414651-71414670 Msa0700410:intron 40.0%
ATTGATGCTGTGTAATCGTG+AGG + chr4_4:71414917-71414936 Msa0700410:three_prime_UTR 40.0%
TTGATGCTGTGTAATCGTGA+GGG + chr4_4:71414918-71414937 Msa0700410:three_prime_UTR 40.0%
TGAACGGTGATCGTTGTTAC+CGG - chr4_4:71413025-71413044 None:intergenic 45.0%
!! ACGGTGGTGATGTTCTTTTC+CGG - chr4_4:71413093-71413112 None:intergenic 45.0%
TGGAAAAACGAAGAGAACGC+CGG - chr4_4:71413127-71413146 None:intergenic 45.0%
!! CGTTCTCTTCGTTTTTCCAC+CGG + chr4_4:71413128-71413147 Msa0700410:five_prime_UTR 45.0%
TCTCAACCTTCCTAACTGCA+AGG - chr4_4:71413598-71413617 None:intergenic 45.0%
CGAAGAAACCAAGCAAAACG+GGG - chr4_4:71413697-71413716 None:intergenic 45.0%
!! AGGGAAAGGGTAATGGGTAA+TGG + chr4_4:71414434-71414453 Msa0700410:intron 45.0%
!! GGGTAATGGGTAATGGTCAA+AGG + chr4_4:71414441-71414460 Msa0700410:intron 45.0%
ATAATCAGGACAGCAACGAG+TGG + chr4_4:71414665-71414684 Msa0700410:CDS 45.0%
!! GGCATAATGGAGCTTTGAGT+TGG + chr4_4:71414694-71414713 Msa0700410:exon 45.0%
TGAACGGTGATCGTTGTTAC+CGG - chr4_4:71413025-71413044 None:intergenic 45.0%
!! ACGGTGGTGATGTTCTTTTC+CGG - chr4_4:71413093-71413112 None:intergenic 45.0%
TGGAAAAACGAAGAGAACGC+CGG - chr4_4:71413127-71413146 None:intergenic 45.0%
!! CGTTCTCTTCGTTTTTCCAC+CGG + chr4_4:71413128-71413147 Msa0700410:five_prime_UTR 45.0%
TCTCAACCTTCCTAACTGCA+AGG - chr4_4:71413598-71413617 None:intergenic 45.0%
CGAAGAAACCAAGCAAAACG+GGG - chr4_4:71413697-71413716 None:intergenic 45.0%
!! AGGGAAAGGGTAATGGGTAA+TGG + chr4_4:71414434-71414453 Msa0700410:intron 45.0%
!! GGGTAATGGGTAATGGTCAA+AGG + chr4_4:71414441-71414460 Msa0700410:intron 45.0%
ATAATCAGGACAGCAACGAG+TGG + chr4_4:71414665-71414684 Msa0700410:CDS 45.0%
!! GGCATAATGGAGCTTTGAGT+TGG + chr4_4:71414694-71414713 Msa0700410:exon 45.0%
!! AAATAAATAAATAAAAAAGT+TGG + chr4_4:71412989-71413008 Msa0700410:five_prime_UTR 5.0%
!! AAATAAATAAATAAAAAAGT+TGG + chr4_4:71412989-71413008 Msa0700410:five_prime_UTR 5.0%
GCCGGAAAATTGAAAGACGG+TGG - chr4_4:71413109-71413128 None:intergenic 50.0%
! CATCAAAGCGCCTTGCAGTT+AGG + chr4_4:71413585-71413604 Msa0700410:CDS 50.0%
! AAAGCGCCTTGCAGTTAGGA+AGG + chr4_4:71413589-71413608 Msa0700410:CDS 50.0%
TGCAGAGAGGGAAAGGGTAA+TGG + chr4_4:71414427-71414446 Msa0700410:intron 50.0%
GCAGAGAGGGAAAGGGTAAT+GGG + chr4_4:71414428-71414447 Msa0700410:intron 50.0%
! CACGGAGCACCAATTCCATA+GGG - chr4_4:71414479-71414498 None:intergenic 50.0%
! TCACGGAGCACCAATTCCAT+AGG - chr4_4:71414480-71414499 None:intergenic 50.0%
GCCGGAAAATTGAAAGACGG+TGG - chr4_4:71413109-71413128 None:intergenic 50.0%
! CATCAAAGCGCCTTGCAGTT+AGG + chr4_4:71413585-71413604 Msa0700410:CDS 50.0%
! AAAGCGCCTTGCAGTTAGGA+AGG + chr4_4:71413589-71413608 Msa0700410:CDS 50.0%
TGCAGAGAGGGAAAGGGTAA+TGG + chr4_4:71414427-71414446 Msa0700410:intron 50.0%
GCAGAGAGGGAAAGGGTAAT+GGG + chr4_4:71414428-71414447 Msa0700410:intron 50.0%
! CACGGAGCACCAATTCCATA+GGG - chr4_4:71414479-71414498 None:intergenic 50.0%
! TCACGGAGCACCAATTCCAT+AGG - chr4_4:71414480-71414499 None:intergenic 50.0%
!! GTAGGATAATGGATCGCCGG+TGG - chr4_4:71413147-71413166 None:intergenic 55.0%
ATCAGGACAGCAACGAGTGG+AGG + chr4_4:71414668-71414687 Msa0700410:CDS 55.0%
! CGAGTGGAGGCATGGCATAA+TGG + chr4_4:71414681-71414700 Msa0700410:CDS 55.0%
!! GTAGGATAATGGATCGCCGG+TGG - chr4_4:71413147-71413166 None:intergenic 55.0%
ATCAGGACAGCAACGAGTGG+AGG + chr4_4:71414668-71414687 Msa0700410:CDS 55.0%
! CGAGTGGAGGCATGGCATAA+TGG + chr4_4:71414681-71414700 Msa0700410:CDS 55.0%
ACCTCGGAGAGAGTCACTGC+CGG + chr4_4:71413071-71413090 Msa0700410:five_prime_UTR 60.0%
CCAAGCAAAACGGGGCCAAC+AGG - chr4_4:71413689-71413708 None:intergenic 60.0%
! CCTGTTGGCCCCGTTTTGCT+TGG + chr4_4:71413686-71413705 Msa0700410:CDS 60.0%
GACAGCAACGAGTGGAGGCA+TGG + chr4_4:71414673-71414692 Msa0700410:CDS 60.0%
ACCTCGGAGAGAGTCACTGC+CGG + chr4_4:71413071-71413090 Msa0700410:five_prime_UTR 60.0%
CCAAGCAAAACGGGGCCAAC+AGG - chr4_4:71413689-71413708 None:intergenic 60.0%
! CCTGTTGGCCCCGTTTTGCT+TGG + chr4_4:71413686-71413705 Msa0700410:CDS 60.0%
GACAGCAACGAGTGGAGGCA+TGG + chr4_4:71414673-71414692 Msa0700410:CDS 60.0%
TCCGGCAGTGACTCTCTCCG+AGG - chr4_4:71413075-71413094 None:intergenic 65.0%
TCCGGCAGTGACTCTCTCCG+AGG - chr4_4:71413075-71413094 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 71412950 71414971 71412950 ID=Msa0700410;Name=Msa0700410
chr4_4 mRNA 71412950 71414971 71412950 ID=Msa0700410-mRNA-1;Parent=Msa0700410;Name=Msa0700410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=226|0.5|0.66|1|1|1|3|260|78
chr4_4 exon 71412950 71413178 71412950 ID=Msa0700410-mRNA-1:exon:21756;Parent=Msa0700410-mRNA-1
chr4_4 exon 71413581 71413756 71413581 ID=Msa0700410-mRNA-1:exon:21757;Parent=Msa0700410-mRNA-1
chr4_4 exon 71414654 71414971 71414654 ID=Msa0700410-mRNA-1:exon:21758;Parent=Msa0700410-mRNA-1
chr4_4 five_prime_UTR 71412950 71413175 71412950 ID=Msa0700410-mRNA-1:five_prime_utr;Parent=Msa0700410-mRNA-1
chr4_4 CDS 71413176 71413178 71413176 ID=Msa0700410-mRNA-1:cds;Parent=Msa0700410-mRNA-1
chr4_4 CDS 71413581 71413756 71413581 ID=Msa0700410-mRNA-1:cds;Parent=Msa0700410-mRNA-1
chr4_4 CDS 71414654 71414711 71414654 ID=Msa0700410-mRNA-1:cds;Parent=Msa0700410-mRNA-1
chr4_4 three_prime_UTR 71414712 71414971 71414712 ID=Msa0700410-mRNA-1:three_prime_utr;Parent=Msa0700410-mRNA-1
Gene Sequence

>Msa0700410

ATGACTACATCAAAGCGCCTTGCAGTTAGGAAGGTTGAGAAGTTCGAGAAAAATATCACAAAAAGAGGAAGTGTGCCAGAAACAACTGTTAAGAAAGGAAATGACTATCCTGTTGGCCCCGTTTTGCTTGGTTTCTTCGTCTTTGTTGTCATTGGATCATGTAAGATTGCCCTTTCAATCTCTCTTTCAGATAATCAGGACAGCAACGAGTGGAGGCATGGCATAATGGAGCTTTGA

Protein sequence

>Msa0700410

MTTSKRLAVRKVEKFEKNITKRGSVPETTVKKGNDYPVGPVLLGFFVFVVIGSCKIALSISLSDNQDSNEWRHGIMEL*