Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166130 | RHN48923.1 | 98.073 | 467 | 8 | 1 | 1 | 466 | 24 | 490 | 0.0 | 961 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166130 | sp|Q9SCQ6|IDD2_ARATH | 54.180 | 323 | 118 | 6 | 9 | 310 | 44 | 357 | 2.58e-105 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166130 | A0A396H847 | 98.073 | 467 | 8 | 1 | 1 | 466 | 24 | 490 | 0.0 | 961 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1166130 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1081750 | Msa1166130 | 0.802477 | 5.507123e-49 | -8.615850e-47 |
| Msa1166130 | Msa1166230 | 0.992324 | 1.297872e-192 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166130 | MtrunA17_Chr7g0268961 | 98.073 | 467 | 8 | 1 | 1 | 466 | 24 | 490 | 0.0 | 961 |
| Msa1166130 | MtrunA17_Chr1g0191991 | 62.893 | 318 | 88 | 7 | 9 | 314 | 73 | 372 | 2.07e-123 | 370 |
| Msa1166130 | MtrunA17_Chr2g0330171 | 55.667 | 300 | 83 | 5 | 9 | 293 | 56 | 320 | 1.08e-106 | 325 |
| Msa1166130 | MtrunA17_Chr8g0342421 | 54.294 | 326 | 119 | 7 | 9 | 321 | 72 | 380 | 1.53e-104 | 321 |
| Msa1166130 | MtrunA17_Chr7g0263941 | 51.821 | 357 | 123 | 10 | 9 | 351 | 44 | 365 | 1.24e-103 | 315 |
| Msa1166130 | MtrunA17_Chr4g0040571 | 50.000 | 360 | 108 | 8 | 9 | 297 | 49 | 407 | 3.16e-103 | 317 |
| Msa1166130 | MtrunA17_Chr8g0373541 | 85.621 | 153 | 22 | 0 | 9 | 161 | 43 | 195 | 8.30e-102 | 314 |
| Msa1166130 | MtrunA17_Chr1g0185121 | 55.518 | 299 | 117 | 4 | 9 | 302 | 50 | 337 | 2.17e-101 | 310 |
| Msa1166130 | MtrunA17_Chr1g0181381 | 82.822 | 163 | 27 | 1 | 9 | 170 | 48 | 210 | 7.39e-101 | 311 |
| Msa1166130 | MtrunA17_Chr1g0210821 | 82.353 | 153 | 27 | 0 | 9 | 161 | 54 | 206 | 2.56e-98 | 306 |
| Msa1166130 | MtrunA17_Chr1g0163001 | 82.895 | 152 | 26 | 0 | 10 | 161 | 54 | 205 | 7.92e-97 | 301 |
| Msa1166130 | MtrunA17_Chr1g0199101 | 82.000 | 150 | 27 | 0 | 9 | 158 | 57 | 206 | 9.70e-97 | 301 |
| Msa1166130 | MtrunA17_Chr4g0029521 | 81.935 | 155 | 27 | 1 | 9 | 162 | 48 | 202 | 1.36e-96 | 300 |
| Msa1166130 | MtrunA17_Chr1g0162971 | 79.085 | 153 | 32 | 0 | 9 | 161 | 51 | 203 | 2.59e-95 | 295 |
| Msa1166130 | MtrunA17_Chr1g0151351 | 49.840 | 313 | 107 | 6 | 9 | 315 | 51 | 319 | 1.48e-94 | 293 |
| Msa1166130 | MtrunA17_Chr2g0326381 | 77.419 | 155 | 34 | 1 | 9 | 162 | 42 | 196 | 2.50e-92 | 286 |
| Msa1166130 | MtrunA17_Chr3g0141431 | 49.045 | 314 | 111 | 7 | 9 | 297 | 32 | 321 | 1.61e-89 | 278 |
| Msa1166130 | MtrunA17_Chr2g0324991 | 84.733 | 131 | 20 | 0 | 10 | 140 | 3 | 133 | 2.87e-83 | 253 |
| Msa1166130 | MtrunA17_Chr8g0375521 | 67.123 | 146 | 46 | 2 | 9 | 152 | 37 | 182 | 7.72e-69 | 225 |
| Msa1166130 | MtrunA17_Chr6g0479921 | 65.068 | 146 | 50 | 1 | 9 | 153 | 39 | 184 | 1.28e-68 | 226 |
| Msa1166130 | MtrunA17_Chr1g0200421 | 33.333 | 177 | 97 | 6 | 13 | 173 | 236 | 407 | 6.20e-24 | 104 |
| Msa1166130 | MtrunA17_Chr2g0320341 | 34.000 | 150 | 85 | 3 | 13 | 148 | 229 | 378 | 7.82e-23 | 100 |
| Msa1166130 | MtrunA17_Chr3g0123941 | 35.762 | 151 | 89 | 3 | 9 | 151 | 118 | 268 | 9.10e-23 | 99.0 |
| Msa1166130 | MtrunA17_Chr7g0258011 | 34.132 | 167 | 86 | 6 | 10 | 159 | 177 | 336 | 3.13e-21 | 94.7 |
| Msa1166130 | MtrunA17_Chr8g0382121 | 34.459 | 148 | 86 | 4 | 12 | 148 | 109 | 256 | 1.18e-20 | 92.4 |
| Msa1166130 | MtrunA17_Chr8g0352011 | 34.524 | 168 | 84 | 8 | 10 | 159 | 167 | 326 | 1.46e-20 | 92.8 |
| Msa1166130 | MtrunA17_Chr5g0422571 | 36.806 | 144 | 78 | 6 | 22 | 154 | 108 | 249 | 1.60e-20 | 91.7 |
| Msa1166130 | MtrunA17_Chr1g0173841 | 35.099 | 151 | 82 | 5 | 10 | 151 | 216 | 359 | 6.34e-20 | 91.3 |
| Msa1166130 | MtrunA17_Chr1g0198651 | 33.537 | 164 | 86 | 7 | 22 | 164 | 109 | 270 | 1.29e-19 | 89.0 |
| Msa1166130 | MtrunA17_Chr2g0328921 | 35.526 | 152 | 80 | 7 | 10 | 151 | 139 | 282 | 1.86e-19 | 89.0 |
| Msa1166130 | MtrunA17_Chr4g0026521 | 35.971 | 139 | 79 | 4 | 22 | 151 | 125 | 262 | 4.37e-19 | 87.4 |
| Msa1166130 | MtrunA17_Chr2g0321291 | 35.252 | 139 | 80 | 4 | 22 | 151 | 140 | 277 | 3.58e-18 | 85.1 |
| Msa1166130 | MtrunA17_Chr4g0053341 | 33.553 | 152 | 83 | 6 | 10 | 151 | 75 | 218 | 3.70e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166130 | AT3G50700.1 | 54.180 | 323 | 118 | 6 | 9 | 310 | 44 | 357 | 2.62e-106 | 323 |
| Msa1166130 | AT1G03840.1 | 85.806 | 155 | 22 | 0 | 9 | 163 | 51 | 205 | 4.17e-100 | 309 |
| Msa1166130 | AT1G03840.2 | 85.161 | 155 | 23 | 0 | 9 | 163 | 49 | 203 | 2.20e-99 | 307 |
| Msa1166130 | AT5G44160.2 | 72.632 | 190 | 44 | 2 | 8 | 189 | 7 | 196 | 1.29e-98 | 303 |
| Msa1166130 | AT5G66730.1 | 84.314 | 153 | 24 | 0 | 9 | 161 | 42 | 194 | 1.58e-98 | 305 |
| Msa1166130 | AT5G44160.1 | 73.016 | 189 | 43 | 2 | 9 | 189 | 47 | 235 | 5.65e-98 | 302 |
| Msa1166130 | AT1G55110.3 | 83.871 | 155 | 24 | 1 | 9 | 162 | 73 | 227 | 2.63e-97 | 300 |
| Msa1166130 | AT1G55110.1 | 83.871 | 155 | 24 | 1 | 9 | 162 | 73 | 227 | 2.63e-97 | 300 |
| Msa1166130 | AT1G55110.2 | 83.871 | 155 | 24 | 1 | 9 | 162 | 73 | 227 | 2.63e-97 | 300 |
| Msa1166130 | AT1G14580.1 | 81.699 | 153 | 28 | 0 | 9 | 161 | 63 | 215 | 3.58e-97 | 300 |
| Msa1166130 | AT1G14580.2 | 81.699 | 153 | 28 | 0 | 9 | 161 | 63 | 215 | 3.58e-97 | 300 |
| Msa1166130 | AT1G14580.3 | 81.699 | 153 | 28 | 0 | 9 | 161 | 77 | 229 | 5.99e-97 | 300 |
| Msa1166130 | AT2G02070.2 | 81.529 | 157 | 29 | 0 | 12 | 168 | 65 | 221 | 6.79e-97 | 304 |
| Msa1166130 | AT2G02070.1 | 81.529 | 157 | 29 | 0 | 12 | 168 | 65 | 221 | 6.79e-97 | 304 |
| Msa1166130 | AT2G02080.1 | 81.046 | 153 | 29 | 0 | 9 | 161 | 64 | 216 | 1.29e-96 | 300 |
| Msa1166130 | AT2G02080.4 | 81.046 | 153 | 29 | 0 | 9 | 161 | 64 | 216 | 1.29e-96 | 300 |
| Msa1166130 | AT2G02080.5 | 81.046 | 153 | 29 | 0 | 9 | 161 | 64 | 216 | 1.29e-96 | 300 |
| Msa1166130 | AT2G02080.3 | 81.046 | 153 | 29 | 0 | 9 | 161 | 64 | 216 | 1.29e-96 | 300 |
| Msa1166130 | AT5G03150.1 | 83.871 | 155 | 24 | 1 | 9 | 162 | 63 | 217 | 1.92e-96 | 300 |
| Msa1166130 | AT3G45260.2 | 81.818 | 154 | 27 | 1 | 9 | 161 | 49 | 202 | 3.65e-95 | 295 |
| Msa1166130 | AT3G45260.1 | 81.818 | 154 | 27 | 1 | 9 | 161 | 49 | 202 | 3.65e-95 | 295 |
| Msa1166130 | AT3G13810.6 | 83.766 | 154 | 24 | 1 | 9 | 161 | 61 | 214 | 1.81e-94 | 294 |
| Msa1166130 | AT3G13810.5 | 83.766 | 154 | 24 | 1 | 9 | 161 | 75 | 228 | 2.71e-94 | 294 |
| Msa1166130 | AT3G13810.4 | 83.766 | 154 | 24 | 1 | 9 | 161 | 80 | 233 | 2.89e-94 | 294 |
| Msa1166130 | AT3G13810.1 | 83.766 | 154 | 24 | 1 | 9 | 161 | 80 | 233 | 2.89e-94 | 294 |
| Msa1166130 | AT3G13810.3 | 81.875 | 160 | 27 | 2 | 4 | 161 | 61 | 220 | 8.64e-94 | 293 |
| Msa1166130 | AT3G13810.2 | 81.875 | 160 | 27 | 2 | 4 | 161 | 75 | 234 | 1.11e-93 | 293 |
| Msa1166130 | AT4G02670.1 | 75.439 | 171 | 38 | 2 | 9 | 175 | 63 | 233 | 1.34e-93 | 289 |
| Msa1166130 | AT4G02670.2 | 75.439 | 171 | 38 | 2 | 9 | 175 | 65 | 235 | 1.52e-93 | 289 |
| Msa1166130 | AT5G60470.1 | 75.926 | 162 | 36 | 2 | 3 | 161 | 37 | 198 | 5.83e-92 | 286 |
| Msa1166130 | AT5G60470.2 | 78.571 | 154 | 32 | 1 | 9 | 161 | 54 | 207 | 1.05e-91 | 286 |
| Msa1166130 | AT5G60470.3 | 78.571 | 154 | 32 | 1 | 9 | 161 | 50 | 203 | 1.20e-91 | 286 |
| Msa1166130 | AT2G02080.6 | 81.295 | 139 | 26 | 0 | 23 | 161 | 1 | 139 | 6.22e-89 | 278 |
| Msa1166130 | AT2G02080.2 | 81.295 | 139 | 26 | 0 | 23 | 161 | 1 | 139 | 6.22e-89 | 278 |
| Msa1166130 | AT1G68130.1 | 67.123 | 146 | 46 | 2 | 9 | 152 | 51 | 196 | 4.42e-69 | 226 |
| Msa1166130 | AT2G01940.1 | 66.216 | 148 | 48 | 2 | 9 | 154 | 54 | 201 | 9.78e-69 | 226 |
| Msa1166130 | AT1G25250.1 | 65.306 | 147 | 48 | 2 | 9 | 152 | 20 | 166 | 5.95e-68 | 221 |
| Msa1166130 | AT1G25250.3 | 65.306 | 147 | 48 | 2 | 9 | 152 | 43 | 189 | 7.28e-68 | 222 |
| Msa1166130 | AT2G01940.3 | 65.101 | 149 | 49 | 3 | 9 | 154 | 54 | 202 | 8.96e-65 | 216 |
| Msa1166130 | AT1G68130.2 | 64.545 | 110 | 37 | 2 | 45 | 152 | 1 | 110 | 2.41e-46 | 164 |
| Msa1166130 | AT2G01940.2 | 64.286 | 112 | 38 | 2 | 45 | 154 | 1 | 112 | 3.71e-46 | 164 |
| Msa1166130 | AT1G25250.2 | 62.162 | 111 | 39 | 2 | 45 | 152 | 1 | 111 | 8.42e-45 | 159 |
| Msa1166130 | AT5G22890.1 | 36.000 | 150 | 82 | 4 | 13 | 148 | 202 | 351 | 1.67e-23 | 102 |
| Msa1166130 | AT1G34370.3 | 33.333 | 153 | 88 | 3 | 13 | 151 | 19 | 171 | 3.85e-23 | 99.4 |
| Msa1166130 | AT1G34370.2 | 33.333 | 153 | 88 | 3 | 13 | 151 | 229 | 381 | 1.11e-22 | 101 |
| Msa1166130 | AT1G34370.1 | 33.333 | 153 | 88 | 3 | 13 | 151 | 229 | 381 | 1.11e-22 | 101 |
| Msa1166130 | AT3G20880.1 | 37.143 | 140 | 76 | 6 | 22 | 151 | 250 | 387 | 7.68e-20 | 92.0 |
| Msa1166130 | AT1G51220.1 | 33.775 | 151 | 84 | 5 | 10 | 151 | 166 | 309 | 1.16e-19 | 90.5 |
| Msa1166130 | AT3G57670.1 | 34.437 | 151 | 83 | 5 | 10 | 151 | 205 | 348 | 3.37e-19 | 89.7 |
| Msa1166130 | AT1G13290.1 | 35.862 | 145 | 79 | 7 | 22 | 154 | 95 | 237 | 6.30e-19 | 87.8 |
| Msa1166130 | AT1G08290.1 | 33.540 | 161 | 88 | 7 | 8 | 151 | 154 | 312 | 1.27e-17 | 84.3 |
| Msa1166130 | AT1G34790.1 | 30.968 | 155 | 95 | 5 | 7 | 151 | 124 | 276 | 4.67e-17 | 82.0 |
Find 96 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGTCCTAATCATGTTTC+TGG | 0.126378 | 7_4:+58141791 | Msa1166130:CDS |
| ATTATCTCCAACAACATTAA+TGG | 0.225501 | 7_4:+58140539 | Msa1166130:CDS |
| TGCATTTGGCTTTGCAAGTT+TGG | 0.264117 | 7_4:-58141371 | None:intergenic |
| CAGCAATGGAGAAATCAATT+TGG | 0.264385 | 7_4:+58142227 | Msa1166130:CDS |
| ATTGCTGTACCTAGAAAATA+TGG | 0.277676 | 7_4:-58140901 | None:intergenic |
| GTCCATGATTTCTTGGGAAT+TGG | 0.293303 | 7_4:+58142094 | Msa1166130:CDS |
| GGCAACAGTCCATGATTTCT+TGG | 0.325473 | 7_4:+58142087 | Msa1166130:CDS |
| TTGGAGCATGTTCTTGAGTT+GGG | 0.332417 | 7_4:-58141484 | None:intergenic |
| GTAATTGAAGCTGTTGGAAT+TGG | 0.337918 | 7_4:-58141621 | None:intergenic |
| TCTACAATGAATAATGATAT+TGG | 0.357969 | 7_4:+58141986 | Msa1166130:CDS |
| AATAATGATATTGGAATGTT+TGG | 0.379983 | 7_4:+58141995 | Msa1166130:CDS |
| TTTGTTGCCATTAATGTTGT+TGG | 0.382808 | 7_4:-58140546 | None:intergenic |
| TCTGAGGAAGTGTTGGAAAC+AGG | 0.383083 | 7_4:-58141422 | None:intergenic |
| GCAAACATGGCGAGAAGAAA+TGG | 0.383718 | 7_4:+58140781 | Msa1166130:CDS |
| AGCAATGGAGAAATCAATTT+GGG | 0.385884 | 7_4:+58142228 | Msa1166130:CDS |
| GTTCATAAGAGGGTTGGTTT+TGG | 0.388862 | 7_4:-58141835 | None:intergenic |
| AAGTGCAGATGTGAAGAAAA+AGG | 0.388942 | 7_4:+58140671 | Msa1166130:CDS |
| CGTGCATTAGGTGACCTTAC+TGG | 0.399967 | 7_4:+58140738 | Msa1166130:CDS |
| CACAATCCAGCTCGTGCATT+AGG | 0.407149 | 7_4:+58140726 | Msa1166130:CDS |
| ATTTCTTCTCGCCATGTTTG+CGG | 0.411811 | 7_4:-58140779 | None:intergenic |
| GCATGCCACTGGTTAATCCT+TGG | 0.413966 | 7_4:-58141346 | None:intergenic |
| TAGAGATAGGATCATGCATT+TGG | 0.417757 | 7_4:-58141385 | None:intergenic |
| TGGATTAAAGTGTTCATAAG+AGG | 0.422907 | 7_4:-58141846 | None:intergenic |
| TGAACCACAGCAACAAAGAT+TGG | 0.429733 | 7_4:+58142138 | Msa1166130:CDS |
| TTTAGCGGCATGGTAGAGAT+AGG | 0.433827 | 7_4:-58141398 | None:intergenic |
| ACCAGAAAACATGTGGTACT+AGG | 0.442303 | 7_4:+58140856 | Msa1166130:CDS |
| CATGATTTCTTGGGAATTGG+AGG | 0.445123 | 7_4:+58142097 | Msa1166130:CDS |
| TTCGGTGTAACTGAAGATTC+TGG | 0.450568 | 7_4:-58140611 | None:intergenic |
| ATGGAAGATTGTGACCTCTT+CGG | 0.458250 | 7_4:-58140629 | None:intergenic |
| GCAACAGTCCATGATTTCTT+GGG | 0.459975 | 7_4:+58142088 | Msa1166130:CDS |
| CATGCCACCACATGCATTGT+TGG | 0.462483 | 7_4:-58141522 | None:intergenic |
| CTCCAATTCCCAAGAAATCA+TGG | 0.464360 | 7_4:-58142096 | None:intergenic |
| AGTTGAAGGGTTGAAGAAGA+TGG | 0.465582 | 7_4:-58141593 | None:intergenic |
| ATAGAACCAGAAACATGATT+AGG | 0.468762 | 7_4:-58141797 | None:intergenic |
| GGTGCTACTGCAAGCAATAG+TGG | 0.468938 | 7_4:+58141728 | Msa1166130:CDS |
| TCTAACATGGCTGGTGTTAG+TGG | 0.470215 | 7_4:+58141884 | Msa1166130:CDS |
| GATACGCTGTTCAATCAGAT+TGG | 0.476113 | 7_4:+58140826 | Msa1166130:CDS |
| TGGAATTGGAACTAAGTTGA+AGG | 0.481061 | 7_4:-58141607 | None:intergenic |
| GTTGGAGCATGTTCTTGAGT+TGG | 0.484302 | 7_4:-58141485 | None:intergenic |
| GCTTCCAATCTTTGTTGCTG+TGG | 0.487682 | 7_4:-58142142 | None:intergenic |
| AATTGTTCAAATTTGATACA+TGG | 0.491018 | 7_4:+58142055 | Msa1166130:CDS |
| AGCATTAAGTCAACAGAGGT+TGG | 0.491230 | 7_4:+58142162 | Msa1166130:CDS |
| GTTTAATTCTGAGGAAGTGT+TGG | 0.503695 | 7_4:-58141429 | None:intergenic |
| CAAGTTTGGTGGCATGCCAC+TGG | 0.504812 | 7_4:-58141357 | None:intergenic |
| GATATTGGAATGTTTGGTCA+TGG | 0.511947 | 7_4:+58142001 | Msa1166130:CDS |
| ACAATCTTCCATGGAAACTT+AGG | 0.513491 | 7_4:+58140640 | Msa1166130:CDS |
| TAAAGTGTTCATAAGAGGGT+TGG | 0.514305 | 7_4:-58141841 | None:intergenic |
| GATGAAGAATGTTGCACAAG+AGG | 0.514880 | 7_4:+58142027 | Msa1166130:CDS |
| TTGGTTGATCTGAATGATGT+TGG | 0.518626 | 7_4:-58141503 | None:intergenic |
| CGCTGTTCAATCAGATTGGA+AGG | 0.519515 | 7_4:+58140830 | Msa1166130:CDS |
| GTTCTTTGCCTAAGTTTCCA+TGG | 0.520812 | 7_4:-58140648 | None:intergenic |
| ATTGAAGTAATTGAAGCTGT+TGG | 0.522656 | 7_4:-58141627 | None:intergenic |
| GAAAAGCTTTGTTAGTAGCA+TGG | 0.526473 | 7_4:+58141769 | Msa1166130:CDS |
| TGGAGGACTAATTGCTGGCA+TGG | 0.527954 | 7_4:+58141661 | Msa1166130:CDS |
| CCAGAAAACATGTGGTACTA+GGG | 0.530598 | 7_4:+58140857 | Msa1166130:CDS |
| ATTTGGCTTTGCAAGTTTGG+TGG | 0.531585 | 7_4:-58141368 | None:intergenic |
| TGGTGAACACATGATGGCTC+AGG | 0.534078 | 7_4:-58140705 | None:intergenic |
| ATAGTCATTGTTTAATTCTG+AGG | 0.543313 | 7_4:-58141438 | None:intergenic |
| GGTTGAAGAAGATGGAGGCA+AGG | 0.548129 | 7_4:-58141585 | None:intergenic |
| ATGGCTGGTGTTAGTGGTGG+AGG | 0.549455 | 7_4:+58141890 | Msa1166130:CDS |
| TGCTGGCATGGCTCAAATGT+CGG | 0.549729 | 7_4:+58141673 | Msa1166130:CDS |
| AGGTCACCTAATGCACGAGC+TGG | 0.556111 | 7_4:-58140732 | None:intergenic |
| GGCATGTTCTCAACTAGTGC+AGG | 0.558296 | 7_4:+58141539 | Msa1166130:CDS |
| TCATCATCATCTTCCACATG+AGG | 0.560330 | 7_4:+58142201 | Msa1166130:CDS |
| TGGAGCATGTTCTTGAGTTG+GGG | 0.560364 | 7_4:-58141483 | None:intergenic |
| CATGAATTATCTAACATGGC+TGG | 0.563778 | 7_4:+58141875 | Msa1166130:CDS |
| GGATTAAAGTGTTCATAAGA+GGG | 0.569779 | 7_4:-58141845 | None:intergenic |
| GAAGAGGTCACAATCTTCCA+TGG | 0.574717 | 7_4:+58140631 | Msa1166130:CDS |
| TCCATTGCTGAATCCTCATG+TGG | 0.577321 | 7_4:-58142214 | None:intergenic |
| TGCATCACAGAATGCTCTGT+GGG | 0.579430 | 7_4:-58141297 | None:intergenic |
| AATAGATCCTACTGCTGAAG+TGG | 0.580873 | 7_4:+58140512 | Msa1166130:CDS |
| AGGGAATACAAATGTGATTG+TGG | 0.590905 | 7_4:+58140876 | Msa1166130:CDS |
| GTGCTACTGCAAGCAATAGT+GGG | 0.592488 | 7_4:+58141729 | Msa1166130:CDS |
| TTAGATAATTCATGCTGCAG+TGG | 0.592945 | 7_4:-58141866 | None:intergenic |
| GGAATTGGAACTAAGTTGAA+GGG | 0.596686 | 7_4:-58141606 | None:intergenic |
| AATGCAACCACTTCAGCAGT+AGG | 0.598028 | 7_4:-58140519 | None:intergenic |
| TGAAGGGTTGAAGAAGATGG+AGG | 0.598478 | 7_4:-58141590 | None:intergenic |
| TCCACATGAGGATTCAGCAA+TGG | 0.616123 | 7_4:+58142213 | Msa1166130:CDS |
| CTAATGCACGAGCTGGATTG+TGG | 0.622870 | 7_4:-58140725 | None:intergenic |
| AATCTTCAGTTACACCGAAG+AGG | 0.641075 | 7_4:+58140615 | Msa1166130:CDS |
| ATGCAACAAGGGATTTCAGA+GGG | 0.641353 | 7_4:+58140587 | Msa1166130:CDS |
| AACATGGCTGGTGTTAGTGG+TGG | 0.642397 | 7_4:+58141887 | Msa1166130:CDS |
| TCAACCAACAATGCATGTGG+TGG | 0.656711 | 7_4:+58141518 | Msa1166130:CDS |
| TATGCAACAAGGGATTTCAG+AGG | 0.657445 | 7_4:+58140586 | Msa1166130:CDS |
| GGATTGTGGTGAACACATGA+TGG | 0.659836 | 7_4:-58140711 | None:intergenic |
| AGATCAACCAACAATGCATG+TGG | 0.667821 | 7_4:+58141515 | Msa1166130:CDS |
| GCAGCATGAATTATCTAACA+TGG | 0.668171 | 7_4:+58141871 | Msa1166130:CDS |
| TGGAAGCATTAAGTCAACAG+AGG | 0.675968 | 7_4:+58142158 | Msa1166130:CDS |
| TTTGATACATGGAAGTGATG+TGG | 0.683521 | 7_4:+58142066 | Msa1166130:CDS |
| ATGCATCACAGAATGCTCTG+TGG | 0.684328 | 7_4:-58141298 | None:intergenic |
| GTGTGTGAGATATGCAACAA+GGG | 0.694352 | 7_4:+58140576 | Msa1166130:CDS |
| GAAAACAACAGAGTAAACCA+AGG | 0.707069 | 7_4:+58141329 | Msa1166130:CDS |
| AAGGCTCACCAGAAAACATG+TGG | 0.716558 | 7_4:+58140849 | Msa1166130:CDS |
| GTAAACCAAGGATTAACCAG+TGG | 0.716826 | 7_4:+58141341 | Msa1166130:CDS |
| GGTGAACACATGATGGCTCA+GGG | 0.717782 | 7_4:-58140704 | None:intergenic |
| TGTGTGTGAGATATGCAACA+AGG | 0.725588 | 7_4:+58140575 | Msa1166130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATAATTTGCATAAT+TGG | + | chr7_4:58141090-58141109 | Msa1166130:intron | 10.0% |
| !!! | TAATTAATAATTTGCATAAT+TGG | + | chr7_4:58141090-58141109 | Msa1166130:intron | 10.0% |
| !!! | AAAATATGTTTTCCATTTTT+AGG | - | chr7_4:58141037-58141056 | None:intergenic | 15.0% |
| !!! | AAAATATGTTTTCCATTTTT+AGG | - | chr7_4:58141037-58141056 | None:intergenic | 15.0% |
| !!! | TAATATTTAGAATGCATGTT+TGG | - | chr7_4:58141212-58141231 | None:intergenic | 20.0% |
| !! | TACTTCAATGACAATAAAAA+TGG | + | chr7_4:58141641-58141660 | Msa1166130:CDS | 20.0% |
| !! | TCTACAATGAATAATGATAT+TGG | + | chr7_4:58141986-58142005 | Msa1166130:CDS | 20.0% |
| !! | AATAATGATATTGGAATGTT+TGG | + | chr7_4:58141995-58142014 | Msa1166130:CDS | 20.0% |
| !! | AATTGTTCAAATTTGATACA+TGG | + | chr7_4:58142055-58142074 | Msa1166130:CDS | 20.0% |
| !!! | TAATATTTAGAATGCATGTT+TGG | - | chr7_4:58141212-58141231 | None:intergenic | 20.0% |
| !! | TACTTCAATGACAATAAAAA+TGG | + | chr7_4:58141641-58141660 | Msa1166130:CDS | 20.0% |
| !! | TCTACAATGAATAATGATAT+TGG | + | chr7_4:58141986-58142005 | Msa1166130:CDS | 20.0% |
| !! | AATAATGATATTGGAATGTT+TGG | + | chr7_4:58141995-58142014 | Msa1166130:CDS | 20.0% |
| !! | AATTGTTCAAATTTGATACA+TGG | + | chr7_4:58142055-58142074 | Msa1166130:CDS | 20.0% |
| ! | ATTATCTCCAACAACATTAA+TGG | + | chr7_4:58140539-58140558 | Msa1166130:CDS | 25.0% |
| ! | TTTGTTACAAATATTTGTGC+AGG | + | chr7_4:58140961-58140980 | Msa1166130:intron | 25.0% |
| ! | TGAAACAAAGTGAATACAAT+AGG | + | chr7_4:58141011-58141030 | Msa1166130:intron | 25.0% |
| ! | AATTGGATTGAAATCGAATT+TGG | + | chr7_4:58141107-58141126 | Msa1166130:intron | 25.0% |
| ! | ATAGTCATTGTTTAATTCTG+AGG | - | chr7_4:58141441-58141460 | None:intergenic | 25.0% |
| ! | TTCAATGACAATAAAAATGG+AGG | + | chr7_4:58141644-58141663 | Msa1166130:CDS | 25.0% |
| !!! | GTTGTTCTTTTTGAAACAAT+TGG | - | chr7_4:58141928-58141947 | None:intergenic | 25.0% |
| ! | ATTATCTCCAACAACATTAA+TGG | + | chr7_4:58140539-58140558 | Msa1166130:CDS | 25.0% |
| ! | TTTGTTACAAATATTTGTGC+AGG | + | chr7_4:58140961-58140980 | Msa1166130:intron | 25.0% |
| ! | TGAAACAAAGTGAATACAAT+AGG | + | chr7_4:58141011-58141030 | Msa1166130:intron | 25.0% |
| ! | AATTGGATTGAAATCGAATT+TGG | + | chr7_4:58141107-58141126 | Msa1166130:intron | 25.0% |
| ! | ATAGTCATTGTTTAATTCTG+AGG | - | chr7_4:58141441-58141460 | None:intergenic | 25.0% |
| ! | TTCAATGACAATAAAAATGG+AGG | + | chr7_4:58141644-58141663 | Msa1166130:CDS | 25.0% |
| !!! | GTTGTTCTTTTTGAAACAAT+TGG | - | chr7_4:58141928-58141947 | None:intergenic | 25.0% |
| TTTGTTGCCATTAATGTTGT+TGG | - | chr7_4:58140549-58140568 | None:intergenic | 30.0% | |
| !!! | AATGTTTTTTGATGCCAGTA+AGG | - | chr7_4:58140755-58140774 | None:intergenic | 30.0% |
| ! | ATTGTGGAACCATATTTTCT+AGG | + | chr7_4:58140892-58140911 | Msa1166130:CDS | 30.0% |
| ATTGCTGTACCTAGAAAATA+TGG | - | chr7_4:58140904-58140923 | None:intergenic | 30.0% | |
| GAATACAATAGGCCTAAAAA+TGG | + | chr7_4:58141022-58141041 | Msa1166130:intron | 30.0% | |
| CCTGTGTTATACAGAAAAAT+AGG | - | chr7_4:58141261-58141280 | None:intergenic | 30.0% | |
| !! | CCTATTTTTCTGTATAACAC+AGG | + | chr7_4:58141258-58141277 | Msa1166130:intron | 30.0% |
| ATTGAAGTAATTGAAGCTGT+TGG | - | chr7_4:58141630-58141649 | None:intergenic | 30.0% | |
| ATAGAACCAGAAACATGATT+AGG | - | chr7_4:58141800-58141819 | None:intergenic | 30.0% | |
| ! | GGATTAAAGTGTTCATAAGA+GGG | - | chr7_4:58141848-58141867 | None:intergenic | 30.0% |
| ! | TGGATTAAAGTGTTCATAAG+AGG | - | chr7_4:58141849-58141868 | None:intergenic | 30.0% |
| AGCAATGGAGAAATCAATTT+GGG | + | chr7_4:58142228-58142247 | Msa1166130:CDS | 30.0% | |
| TTTGTTGCCATTAATGTTGT+TGG | - | chr7_4:58140549-58140568 | None:intergenic | 30.0% | |
| !!! | AATGTTTTTTGATGCCAGTA+AGG | - | chr7_4:58140755-58140774 | None:intergenic | 30.0% |
| ! | ATTGTGGAACCATATTTTCT+AGG | + | chr7_4:58140892-58140911 | Msa1166130:CDS | 30.0% |
| ATTGCTGTACCTAGAAAATA+TGG | - | chr7_4:58140904-58140923 | None:intergenic | 30.0% | |
| GAATACAATAGGCCTAAAAA+TGG | + | chr7_4:58141022-58141041 | Msa1166130:intron | 30.0% | |
| CCTGTGTTATACAGAAAAAT+AGG | - | chr7_4:58141261-58141280 | None:intergenic | 30.0% | |
| !! | CCTATTTTTCTGTATAACAC+AGG | + | chr7_4:58141258-58141277 | Msa1166130:intron | 30.0% |
| ATTGAAGTAATTGAAGCTGT+TGG | - | chr7_4:58141630-58141649 | None:intergenic | 30.0% | |
| ATAGAACCAGAAACATGATT+AGG | - | chr7_4:58141800-58141819 | None:intergenic | 30.0% | |
| ! | GGATTAAAGTGTTCATAAGA+GGG | - | chr7_4:58141848-58141867 | None:intergenic | 30.0% |
| ! | TGGATTAAAGTGTTCATAAG+AGG | - | chr7_4:58141849-58141868 | None:intergenic | 30.0% |
| AGCAATGGAGAAATCAATTT+GGG | + | chr7_4:58142228-58142247 | Msa1166130:CDS | 30.0% | |
| ACAATCTTCCATGGAAACTT+AGG | + | chr7_4:58140640-58140659 | Msa1166130:CDS | 35.0% | |
| AAGTGCAGATGTGAAGAAAA+AGG | + | chr7_4:58140671-58140690 | Msa1166130:CDS | 35.0% | |
| !! | AAACATTTTAGCCGCAAACA+TGG | + | chr7_4:58140768-58140787 | Msa1166130:CDS | 35.0% |
| AGGGAATACAAATGTGATTG+TGG | + | chr7_4:58140876-58140895 | Msa1166130:CDS | 35.0% | |
| !!! | TTTTCCGCCTTATTTTCACA+CGG | + | chr7_4:58140935-58140954 | Msa1166130:intron | 35.0% |
| ! | AGAATGCATGTTTGGAATCA+GGG | - | chr7_4:58141204-58141223 | None:intergenic | 35.0% |
| ! | TAGAATGCATGTTTGGAATC+AGG | - | chr7_4:58141205-58141224 | None:intergenic | 35.0% |
| GAAAACAACAGAGTAAACCA+AGG | + | chr7_4:58141329-58141348 | Msa1166130:CDS | 35.0% | |
| TAGAGATAGGATCATGCATT+TGG | - | chr7_4:58141388-58141407 | None:intergenic | 35.0% | |
| ! | GTTTAATTCTGAGGAAGTGT+TGG | - | chr7_4:58141432-58141451 | None:intergenic | 35.0% |
| ! | GGGATCTTAGTGAGTTTTTA+GGG | - | chr7_4:58141466-58141485 | None:intergenic | 35.0% |
| TTGGTTGATCTGAATGATGT+TGG | - | chr7_4:58141506-58141525 | None:intergenic | 35.0% | |
| ! | GGAATTGGAACTAAGTTGAA+GGG | - | chr7_4:58141609-58141628 | None:intergenic | 35.0% |
| ! | TGGAATTGGAACTAAGTTGA+AGG | - | chr7_4:58141610-58141629 | None:intergenic | 35.0% |
| GTAATTGAAGCTGTTGGAAT+TGG | - | chr7_4:58141624-58141643 | None:intergenic | 35.0% | |
| AAAAATGGAGGACTAATTGC+TGG | + | chr7_4:58141656-58141675 | Msa1166130:CDS | 35.0% | |
| !!! | TGCTGCTTTTTGTAGTAAAG+CGG | - | chr7_4:58141702-58141721 | None:intergenic | 35.0% |
| ACTACAAAAAGCAGCACAAA+TGG | + | chr7_4:58141706-58141725 | Msa1166130:CDS | 35.0% | |
| CTACAAAAAGCAGCACAAAT+GGG | + | chr7_4:58141707-58141726 | Msa1166130:CDS | 35.0% | |
| ! | AACAAAGCTTTTCTGCATCA+TGG | - | chr7_4:58141762-58141781 | None:intergenic | 35.0% |
| !! | GAAAAGCTTTGTTAGTAGCA+TGG | + | chr7_4:58141769-58141788 | Msa1166130:CDS | 35.0% |
| GTTAGTCCTAATCATGTTTC+TGG | + | chr7_4:58141791-58141810 | Msa1166130:CDS | 35.0% | |
| ! | TAAAGTGTTCATAAGAGGGT+TGG | - | chr7_4:58141844-58141863 | None:intergenic | 35.0% |
| TTAGATAATTCATGCTGCAG+TGG | - | chr7_4:58141869-58141888 | None:intergenic | 35.0% | |
| GCAGCATGAATTATCTAACA+TGG | + | chr7_4:58141871-58141890 | Msa1166130:CDS | 35.0% | |
| CATGAATTATCTAACATGGC+TGG | + | chr7_4:58141875-58141894 | Msa1166130:CDS | 35.0% | |
| GATATTGGAATGTTTGGTCA+TGG | + | chr7_4:58142001-58142020 | Msa1166130:CDS | 35.0% | |
| TTTGATACATGGAAGTGATG+TGG | + | chr7_4:58142066-58142085 | Msa1166130:CDS | 35.0% | |
| CAGCAATGGAGAAATCAATT+TGG | + | chr7_4:58142227-58142246 | Msa1166130:CDS | 35.0% | |
| ACAATCTTCCATGGAAACTT+AGG | + | chr7_4:58140640-58140659 | Msa1166130:CDS | 35.0% | |
| AAGTGCAGATGTGAAGAAAA+AGG | + | chr7_4:58140671-58140690 | Msa1166130:CDS | 35.0% | |
| !! | AAACATTTTAGCCGCAAACA+TGG | + | chr7_4:58140768-58140787 | Msa1166130:CDS | 35.0% |
| AGGGAATACAAATGTGATTG+TGG | + | chr7_4:58140876-58140895 | Msa1166130:CDS | 35.0% | |
| !!! | TTTTCCGCCTTATTTTCACA+CGG | + | chr7_4:58140935-58140954 | Msa1166130:intron | 35.0% |
| ! | AGAATGCATGTTTGGAATCA+GGG | - | chr7_4:58141204-58141223 | None:intergenic | 35.0% |
| ! | TAGAATGCATGTTTGGAATC+AGG | - | chr7_4:58141205-58141224 | None:intergenic | 35.0% |
| GAAAACAACAGAGTAAACCA+AGG | + | chr7_4:58141329-58141348 | Msa1166130:CDS | 35.0% | |
| TAGAGATAGGATCATGCATT+TGG | - | chr7_4:58141388-58141407 | None:intergenic | 35.0% | |
| ! | GTTTAATTCTGAGGAAGTGT+TGG | - | chr7_4:58141432-58141451 | None:intergenic | 35.0% |
| ! | GGGATCTTAGTGAGTTTTTA+GGG | - | chr7_4:58141466-58141485 | None:intergenic | 35.0% |
| TTGGTTGATCTGAATGATGT+TGG | - | chr7_4:58141506-58141525 | None:intergenic | 35.0% | |
| ! | GGAATTGGAACTAAGTTGAA+GGG | - | chr7_4:58141609-58141628 | None:intergenic | 35.0% |
| ! | TGGAATTGGAACTAAGTTGA+AGG | - | chr7_4:58141610-58141629 | None:intergenic | 35.0% |
| GTAATTGAAGCTGTTGGAAT+TGG | - | chr7_4:58141624-58141643 | None:intergenic | 35.0% | |
| AAAAATGGAGGACTAATTGC+TGG | + | chr7_4:58141656-58141675 | Msa1166130:CDS | 35.0% | |
| !!! | TGCTGCTTTTTGTAGTAAAG+CGG | - | chr7_4:58141702-58141721 | None:intergenic | 35.0% |
| ACTACAAAAAGCAGCACAAA+TGG | + | chr7_4:58141706-58141725 | Msa1166130:CDS | 35.0% | |
| CTACAAAAAGCAGCACAAAT+GGG | + | chr7_4:58141707-58141726 | Msa1166130:CDS | 35.0% | |
| ! | AACAAAGCTTTTCTGCATCA+TGG | - | chr7_4:58141762-58141781 | None:intergenic | 35.0% |
| !! | GAAAAGCTTTGTTAGTAGCA+TGG | + | chr7_4:58141769-58141788 | Msa1166130:CDS | 35.0% |
| GTTAGTCCTAATCATGTTTC+TGG | + | chr7_4:58141791-58141810 | Msa1166130:CDS | 35.0% | |
| ! | TAAAGTGTTCATAAGAGGGT+TGG | - | chr7_4:58141844-58141863 | None:intergenic | 35.0% |
| TTAGATAATTCATGCTGCAG+TGG | - | chr7_4:58141869-58141888 | None:intergenic | 35.0% | |
| GCAGCATGAATTATCTAACA+TGG | + | chr7_4:58141871-58141890 | Msa1166130:CDS | 35.0% | |
| CATGAATTATCTAACATGGC+TGG | + | chr7_4:58141875-58141894 | Msa1166130:CDS | 35.0% | |
| GATATTGGAATGTTTGGTCA+TGG | + | chr7_4:58142001-58142020 | Msa1166130:CDS | 35.0% | |
| TTTGATACATGGAAGTGATG+TGG | + | chr7_4:58142066-58142085 | Msa1166130:CDS | 35.0% | |
| CAGCAATGGAGAAATCAATT+TGG | + | chr7_4:58142227-58142246 | Msa1166130:CDS | 35.0% | |
| AATAGATCCTACTGCTGAAG+TGG | + | chr7_4:58140512-58140531 | Msa1166130:CDS | 40.0% | |
| TGTGTGTGAGATATGCAACA+AGG | + | chr7_4:58140575-58140594 | Msa1166130:CDS | 40.0% | |
| GTGTGTGAGATATGCAACAA+GGG | + | chr7_4:58140576-58140595 | Msa1166130:CDS | 40.0% | |
| TATGCAACAAGGGATTTCAG+AGG | + | chr7_4:58140586-58140605 | Msa1166130:CDS | 40.0% | |
| ATGCAACAAGGGATTTCAGA+GGG | + | chr7_4:58140587-58140606 | Msa1166130:CDS | 40.0% | |
| ! | TTCGGTGTAACTGAAGATTC+TGG | - | chr7_4:58140614-58140633 | None:intergenic | 40.0% |
| AATCTTCAGTTACACCGAAG+AGG | + | chr7_4:58140615-58140634 | Msa1166130:CDS | 40.0% | |
| ATGGAAGATTGTGACCTCTT+CGG | - | chr7_4:58140632-58140651 | None:intergenic | 40.0% | |
| GTTCTTTGCCTAAGTTTCCA+TGG | - | chr7_4:58140651-58140670 | None:intergenic | 40.0% | |
| ATTTCTTCTCGCCATGTTTG+CGG | - | chr7_4:58140782-58140801 | None:intergenic | 40.0% | |
| GATACGCTGTTCAATCAGAT+TGG | + | chr7_4:58140826-58140845 | Msa1166130:CDS | 40.0% | |
| ACCAGAAAACATGTGGTACT+AGG | + | chr7_4:58140856-58140875 | Msa1166130:CDS | 40.0% | |
| CCAGAAAACATGTGGTACTA+GGG | + | chr7_4:58140857-58140876 | Msa1166130:CDS | 40.0% | |
| CAAATCGCCGTGTGAAAATA+AGG | - | chr7_4:58140945-58140964 | None:intergenic | 40.0% | |
| GTAAACCAAGGATTAACCAG+TGG | + | chr7_4:58141341-58141360 | Msa1166130:CDS | 40.0% | |
| !! | ATTTGGCTTTGCAAGTTTGG+TGG | - | chr7_4:58141371-58141390 | None:intergenic | 40.0% |
| !! | TGCATTTGGCTTTGCAAGTT+TGG | - | chr7_4:58141374-58141393 | None:intergenic | 40.0% |
| !! | GTGTTGGAAACAGGTTTTAG+CGG | - | chr7_4:58141416-58141435 | None:intergenic | 40.0% |
| ! | GGGGATCTTAGTGAGTTTTT+AGG | - | chr7_4:58141467-58141486 | None:intergenic | 40.0% |
| TTGGAGCATGTTCTTGAGTT+GGG | - | chr7_4:58141487-58141506 | None:intergenic | 40.0% | |
| AGATCAACCAACAATGCATG+TGG | + | chr7_4:58141515-58141534 | Msa1166130:CDS | 40.0% | |
| ! | AAGATGGAGGCAAGGTTTTT+GGG | - | chr7_4:58141580-58141599 | None:intergenic | 40.0% |
| AGTTGAAGGGTTGAAGAAGA+TGG | - | chr7_4:58141596-58141615 | None:intergenic | 40.0% | |
| !!! | GTTCATAAGAGGGTTGGTTT+TGG | - | chr7_4:58141838-58141857 | None:intergenic | 40.0% |
| GATGAAGAATGTTGCACAAG+AGG | + | chr7_4:58142027-58142046 | Msa1166130:CDS | 40.0% | |
| GCAACAGTCCATGATTTCTT+GGG | + | chr7_4:58142088-58142107 | Msa1166130:CDS | 40.0% | |
| GTCCATGATTTCTTGGGAAT+TGG | + | chr7_4:58142094-58142113 | Msa1166130:CDS | 40.0% | |
| CTCCAATTCCCAAGAAATCA+TGG | - | chr7_4:58142099-58142118 | None:intergenic | 40.0% | |
| CATGATTTCTTGGGAATTGG+AGG | + | chr7_4:58142097-58142116 | Msa1166130:CDS | 40.0% | |
| TGAACCACAGCAACAAAGAT+TGG | + | chr7_4:58142138-58142157 | Msa1166130:CDS | 40.0% | |
| !! | TGGAAGCATTAAGTCAACAG+AGG | + | chr7_4:58142158-58142177 | Msa1166130:CDS | 40.0% |
| AGCATTAAGTCAACAGAGGT+TGG | + | chr7_4:58142162-58142181 | Msa1166130:CDS | 40.0% | |
| TCATCATCATCTTCCACATG+AGG | + | chr7_4:58142201-58142220 | Msa1166130:CDS | 40.0% | |
| AATAGATCCTACTGCTGAAG+TGG | + | chr7_4:58140512-58140531 | Msa1166130:CDS | 40.0% | |
| TGTGTGTGAGATATGCAACA+AGG | + | chr7_4:58140575-58140594 | Msa1166130:CDS | 40.0% | |
| GTGTGTGAGATATGCAACAA+GGG | + | chr7_4:58140576-58140595 | Msa1166130:CDS | 40.0% | |
| TATGCAACAAGGGATTTCAG+AGG | + | chr7_4:58140586-58140605 | Msa1166130:CDS | 40.0% | |
| ATGCAACAAGGGATTTCAGA+GGG | + | chr7_4:58140587-58140606 | Msa1166130:CDS | 40.0% | |
| ! | TTCGGTGTAACTGAAGATTC+TGG | - | chr7_4:58140614-58140633 | None:intergenic | 40.0% |
| AATCTTCAGTTACACCGAAG+AGG | + | chr7_4:58140615-58140634 | Msa1166130:CDS | 40.0% | |
| ATGGAAGATTGTGACCTCTT+CGG | - | chr7_4:58140632-58140651 | None:intergenic | 40.0% | |
| GTTCTTTGCCTAAGTTTCCA+TGG | - | chr7_4:58140651-58140670 | None:intergenic | 40.0% | |
| ATTTCTTCTCGCCATGTTTG+CGG | - | chr7_4:58140782-58140801 | None:intergenic | 40.0% | |
| GATACGCTGTTCAATCAGAT+TGG | + | chr7_4:58140826-58140845 | Msa1166130:CDS | 40.0% | |
| ACCAGAAAACATGTGGTACT+AGG | + | chr7_4:58140856-58140875 | Msa1166130:CDS | 40.0% | |
| CCAGAAAACATGTGGTACTA+GGG | + | chr7_4:58140857-58140876 | Msa1166130:CDS | 40.0% | |
| CAAATCGCCGTGTGAAAATA+AGG | - | chr7_4:58140945-58140964 | None:intergenic | 40.0% | |
| GTAAACCAAGGATTAACCAG+TGG | + | chr7_4:58141341-58141360 | Msa1166130:CDS | 40.0% | |
| !! | ATTTGGCTTTGCAAGTTTGG+TGG | - | chr7_4:58141371-58141390 | None:intergenic | 40.0% |
| !! | TGCATTTGGCTTTGCAAGTT+TGG | - | chr7_4:58141374-58141393 | None:intergenic | 40.0% |
| !! | GTGTTGGAAACAGGTTTTAG+CGG | - | chr7_4:58141416-58141435 | None:intergenic | 40.0% |
| ! | GGGGATCTTAGTGAGTTTTT+AGG | - | chr7_4:58141467-58141486 | None:intergenic | 40.0% |
| TTGGAGCATGTTCTTGAGTT+GGG | - | chr7_4:58141487-58141506 | None:intergenic | 40.0% | |
| AGATCAACCAACAATGCATG+TGG | + | chr7_4:58141515-58141534 | Msa1166130:CDS | 40.0% | |
| ! | AAGATGGAGGCAAGGTTTTT+GGG | - | chr7_4:58141580-58141599 | None:intergenic | 40.0% |
| AGTTGAAGGGTTGAAGAAGA+TGG | - | chr7_4:58141596-58141615 | None:intergenic | 40.0% | |
| !!! | GTTCATAAGAGGGTTGGTTT+TGG | - | chr7_4:58141838-58141857 | None:intergenic | 40.0% |
| GATGAAGAATGTTGCACAAG+AGG | + | chr7_4:58142027-58142046 | Msa1166130:CDS | 40.0% | |
| GCAACAGTCCATGATTTCTT+GGG | + | chr7_4:58142088-58142107 | Msa1166130:CDS | 40.0% | |
| GTCCATGATTTCTTGGGAAT+TGG | + | chr7_4:58142094-58142113 | Msa1166130:CDS | 40.0% | |
| CTCCAATTCCCAAGAAATCA+TGG | - | chr7_4:58142099-58142118 | None:intergenic | 40.0% | |
| CATGATTTCTTGGGAATTGG+AGG | + | chr7_4:58142097-58142116 | Msa1166130:CDS | 40.0% | |
| TGAACCACAGCAACAAAGAT+TGG | + | chr7_4:58142138-58142157 | Msa1166130:CDS | 40.0% | |
| !! | TGGAAGCATTAAGTCAACAG+AGG | + | chr7_4:58142158-58142177 | Msa1166130:CDS | 40.0% |
| AGCATTAAGTCAACAGAGGT+TGG | + | chr7_4:58142162-58142181 | Msa1166130:CDS | 40.0% | |
| TCATCATCATCTTCCACATG+AGG | + | chr7_4:58142201-58142220 | Msa1166130:CDS | 40.0% | |
| AATGCAACCACTTCAGCAGT+AGG | - | chr7_4:58140522-58140541 | None:intergenic | 45.0% | |
| GAAGAGGTCACAATCTTCCA+TGG | + | chr7_4:58140631-58140650 | Msa1166130:CDS | 45.0% | |
| GGATTGTGGTGAACACATGA+TGG | - | chr7_4:58140714-58140733 | None:intergenic | 45.0% | |
| GCAAACATGGCGAGAAGAAA+TGG | + | chr7_4:58140781-58140800 | Msa1166130:CDS | 45.0% | |
| CGCTGTTCAATCAGATTGGA+AGG | + | chr7_4:58140830-58140849 | Msa1166130:CDS | 45.0% | |
| AAGGCTCACCAGAAAACATG+TGG | + | chr7_4:58140849-58140868 | Msa1166130:CDS | 45.0% | |
| ! | CCCTAGTACCACATGTTTTC+TGG | - | chr7_4:58140860-58140879 | None:intergenic | 45.0% |
| ATCGCCGTGTGAAAATAAGG+CGG | - | chr7_4:58140942-58140961 | None:intergenic | 45.0% | |
| TGCATCACAGAATGCTCTGT+GGG | - | chr7_4:58141300-58141319 | None:intergenic | 45.0% | |
| ATGCATCACAGAATGCTCTG+TGG | - | chr7_4:58141301-58141320 | None:intergenic | 45.0% | |
| TTTAGCGGCATGGTAGAGAT+AGG | - | chr7_4:58141401-58141420 | None:intergenic | 45.0% | |
| !! | TCTGAGGAAGTGTTGGAAAC+AGG | - | chr7_4:58141425-58141444 | None:intergenic | 45.0% |
| ! | TGGAGCATGTTCTTGAGTTG+GGG | - | chr7_4:58141486-58141505 | None:intergenic | 45.0% |
| GTTGGAGCATGTTCTTGAGT+TGG | - | chr7_4:58141488-58141507 | None:intergenic | 45.0% | |
| TCAACCAACAATGCATGTGG+TGG | + | chr7_4:58141518-58141537 | Msa1166130:CDS | 45.0% | |
| ! | ACTAGTGCAGGTGCACTTTT+TGG | + | chr7_4:58141551-58141570 | Msa1166130:CDS | 45.0% |
| ! | GAAGATGGAGGCAAGGTTTT+TGG | - | chr7_4:58141581-58141600 | None:intergenic | 45.0% |
| TGAAGGGTTGAAGAAGATGG+AGG | - | chr7_4:58141593-58141612 | None:intergenic | 45.0% | |
| ! | GTGCTACTGCAAGCAATAGT+GGG | + | chr7_4:58141729-58141748 | Msa1166130:CDS | 45.0% |
| ! | TCTAACATGGCTGGTGTTAG+TGG | + | chr7_4:58141884-58141903 | Msa1166130:CDS | 45.0% |
| GGCAACAGTCCATGATTTCT+TGG | + | chr7_4:58142087-58142106 | Msa1166130:CDS | 45.0% | |
| GCTTCCAATCTTTGTTGCTG+TGG | - | chr7_4:58142145-58142164 | None:intergenic | 45.0% | |
| TCCACATGAGGATTCAGCAA+TGG | + | chr7_4:58142213-58142232 | Msa1166130:CDS | 45.0% | |
| TCCATTGCTGAATCCTCATG+TGG | - | chr7_4:58142217-58142236 | None:intergenic | 45.0% | |
| AATGCAACCACTTCAGCAGT+AGG | - | chr7_4:58140522-58140541 | None:intergenic | 45.0% | |
| GAAGAGGTCACAATCTTCCA+TGG | + | chr7_4:58140631-58140650 | Msa1166130:CDS | 45.0% | |
| GGATTGTGGTGAACACATGA+TGG | - | chr7_4:58140714-58140733 | None:intergenic | 45.0% | |
| GCAAACATGGCGAGAAGAAA+TGG | + | chr7_4:58140781-58140800 | Msa1166130:CDS | 45.0% | |
| CGCTGTTCAATCAGATTGGA+AGG | + | chr7_4:58140830-58140849 | Msa1166130:CDS | 45.0% | |
| AAGGCTCACCAGAAAACATG+TGG | + | chr7_4:58140849-58140868 | Msa1166130:CDS | 45.0% | |
| ! | CCCTAGTACCACATGTTTTC+TGG | - | chr7_4:58140860-58140879 | None:intergenic | 45.0% |
| ATCGCCGTGTGAAAATAAGG+CGG | - | chr7_4:58140942-58140961 | None:intergenic | 45.0% | |
| TGCATCACAGAATGCTCTGT+GGG | - | chr7_4:58141300-58141319 | None:intergenic | 45.0% | |
| ATGCATCACAGAATGCTCTG+TGG | - | chr7_4:58141301-58141320 | None:intergenic | 45.0% | |
| TTTAGCGGCATGGTAGAGAT+AGG | - | chr7_4:58141401-58141420 | None:intergenic | 45.0% | |
| !! | TCTGAGGAAGTGTTGGAAAC+AGG | - | chr7_4:58141425-58141444 | None:intergenic | 45.0% |
| ! | TGGAGCATGTTCTTGAGTTG+GGG | - | chr7_4:58141486-58141505 | None:intergenic | 45.0% |
| GTTGGAGCATGTTCTTGAGT+TGG | - | chr7_4:58141488-58141507 | None:intergenic | 45.0% | |
| TCAACCAACAATGCATGTGG+TGG | + | chr7_4:58141518-58141537 | Msa1166130:CDS | 45.0% | |
| ! | ACTAGTGCAGGTGCACTTTT+TGG | + | chr7_4:58141551-58141570 | Msa1166130:CDS | 45.0% |
| ! | GAAGATGGAGGCAAGGTTTT+TGG | - | chr7_4:58141581-58141600 | None:intergenic | 45.0% |
| TGAAGGGTTGAAGAAGATGG+AGG | - | chr7_4:58141593-58141612 | None:intergenic | 45.0% | |
| ! | GTGCTACTGCAAGCAATAGT+GGG | + | chr7_4:58141729-58141748 | Msa1166130:CDS | 45.0% |
| ! | TCTAACATGGCTGGTGTTAG+TGG | + | chr7_4:58141884-58141903 | Msa1166130:CDS | 45.0% |
| GGCAACAGTCCATGATTTCT+TGG | + | chr7_4:58142087-58142106 | Msa1166130:CDS | 45.0% | |
| GCTTCCAATCTTTGTTGCTG+TGG | - | chr7_4:58142145-58142164 | None:intergenic | 45.0% | |
| TCCACATGAGGATTCAGCAA+TGG | + | chr7_4:58142213-58142232 | Msa1166130:CDS | 45.0% | |
| TCCATTGCTGAATCCTCATG+TGG | - | chr7_4:58142217-58142236 | None:intergenic | 45.0% | |
| GGTGAACACATGATGGCTCA+GGG | - | chr7_4:58140707-58140726 | None:intergenic | 50.0% | |
| TGGTGAACACATGATGGCTC+AGG | - | chr7_4:58140708-58140727 | None:intergenic | 50.0% | |
| CTAATGCACGAGCTGGATTG+TGG | - | chr7_4:58140728-58140747 | None:intergenic | 50.0% | |
| CACAATCCAGCTCGTGCATT+AGG | + | chr7_4:58140726-58140745 | Msa1166130:CDS | 50.0% | |
| CGTGCATTAGGTGACCTTAC+TGG | + | chr7_4:58140738-58140757 | Msa1166130:CDS | 50.0% | |
| ! | GCATGCCACTGGTTAATCCT+TGG | - | chr7_4:58141349-58141368 | None:intergenic | 50.0% |
| !! | GGAAACAGGTTTTAGCGGCA+TGG | - | chr7_4:58141411-58141430 | None:intergenic | 50.0% |
| CATGCCACCACATGCATTGT+TGG | - | chr7_4:58141525-58141544 | None:intergenic | 50.0% | |
| GGCATGTTCTCAACTAGTGC+AGG | + | chr7_4:58141539-58141558 | Msa1166130:CDS | 50.0% | |
| !! | AGTGCAGGTGCACTTTTTGG+TGG | + | chr7_4:58141554-58141573 | Msa1166130:CDS | 50.0% |
| GGTTGAAGAAGATGGAGGCA+AGG | - | chr7_4:58141588-58141607 | None:intergenic | 50.0% | |
| TGGAGGACTAATTGCTGGCA+TGG | + | chr7_4:58141661-58141680 | Msa1166130:CDS | 50.0% | |
| TGCTGGCATGGCTCAAATGT+CGG | + | chr7_4:58141673-58141692 | Msa1166130:CDS | 50.0% | |
| !! | GGTGCTACTGCAAGCAATAG+TGG | + | chr7_4:58141728-58141747 | Msa1166130:CDS | 50.0% |
| ! | AACATGGCTGGTGTTAGTGG+TGG | + | chr7_4:58141887-58141906 | Msa1166130:CDS | 50.0% |
| GGTGAACACATGATGGCTCA+GGG | - | chr7_4:58140707-58140726 | None:intergenic | 50.0% | |
| TGGTGAACACATGATGGCTC+AGG | - | chr7_4:58140708-58140727 | None:intergenic | 50.0% | |
| CTAATGCACGAGCTGGATTG+TGG | - | chr7_4:58140728-58140747 | None:intergenic | 50.0% | |
| CACAATCCAGCTCGTGCATT+AGG | + | chr7_4:58140726-58140745 | Msa1166130:CDS | 50.0% | |
| CGTGCATTAGGTGACCTTAC+TGG | + | chr7_4:58140738-58140757 | Msa1166130:CDS | 50.0% | |
| ! | GCATGCCACTGGTTAATCCT+TGG | - | chr7_4:58141349-58141368 | None:intergenic | 50.0% |
| !! | GGAAACAGGTTTTAGCGGCA+TGG | - | chr7_4:58141411-58141430 | None:intergenic | 50.0% |
| CATGCCACCACATGCATTGT+TGG | - | chr7_4:58141525-58141544 | None:intergenic | 50.0% | |
| GGCATGTTCTCAACTAGTGC+AGG | + | chr7_4:58141539-58141558 | Msa1166130:CDS | 50.0% | |
| !! | AGTGCAGGTGCACTTTTTGG+TGG | + | chr7_4:58141554-58141573 | Msa1166130:CDS | 50.0% |
| GGTTGAAGAAGATGGAGGCA+AGG | - | chr7_4:58141588-58141607 | None:intergenic | 50.0% | |
| TGGAGGACTAATTGCTGGCA+TGG | + | chr7_4:58141661-58141680 | Msa1166130:CDS | 50.0% | |
| TGCTGGCATGGCTCAAATGT+CGG | + | chr7_4:58141673-58141692 | Msa1166130:CDS | 50.0% | |
| !! | GGTGCTACTGCAAGCAATAG+TGG | + | chr7_4:58141728-58141747 | Msa1166130:CDS | 50.0% |
| ! | AACATGGCTGGTGTTAGTGG+TGG | + | chr7_4:58141887-58141906 | Msa1166130:CDS | 50.0% |
| AGGTCACCTAATGCACGAGC+TGG | - | chr7_4:58140735-58140754 | None:intergenic | 55.0% | |
| ! | CAAGTTTGGTGGCATGCCAC+TGG | - | chr7_4:58141360-58141379 | None:intergenic | 55.0% |
| ! | ATGGCTGGTGTTAGTGGTGG+AGG | + | chr7_4:58141890-58141909 | Msa1166130:CDS | 55.0% |
| AGGTCACCTAATGCACGAGC+TGG | - | chr7_4:58140735-58140754 | None:intergenic | 55.0% | |
| ! | CAAGTTTGGTGGCATGCCAC+TGG | - | chr7_4:58141360-58141379 | None:intergenic | 55.0% |
| ! | ATGGCTGGTGTTAGTGGTGG+AGG | + | chr7_4:58141890-58141909 | Msa1166130:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 58140492 | 58142258 | 58140492 | ID=Msa1166130;Name=Msa1166130 |
| chr7_4 | mRNA | 58140492 | 58142258 | 58140492 | ID=Msa1166130-mRNA-1;Parent=Msa1166130;Name=Msa1166130-mRNA-1;_AED=0.20;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|466 |
| chr7_4 | exon | 58140492 | 58140913 | 58140492 | ID=Msa1166130-mRNA-1:exon:17768;Parent=Msa1166130-mRNA-1 |
| chr7_4 | exon | 58141280 | 58142258 | 58141280 | ID=Msa1166130-mRNA-1:exon:17769;Parent=Msa1166130-mRNA-1 |
| chr7_4 | CDS | 58140492 | 58140913 | 58140492 | ID=Msa1166130-mRNA-1:cds;Parent=Msa1166130-mRNA-1 |
| chr7_4 | CDS | 58141280 | 58142258 | 58141280 | ID=Msa1166130-mRNA-1:cds;Parent=Msa1166130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
