Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166230 | RHN48923.1 | 98.073 | 467 | 8 | 1 | 1 | 466 | 24 | 490 | 0.0 | 961 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166230 | sp|Q9SCQ6|IDD2_ARATH | 54.180 | 323 | 118 | 6 | 9 | 310 | 44 | 357 | 2.58e-105 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166230 | A0A396H847 | 98.073 | 467 | 8 | 1 | 1 | 466 | 24 | 490 | 0.0 | 961 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1166230 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1081750 | Msa1166230 | 0.805895 | 1.070519e-49 | -8.615850e-47 |
| Msa1166130 | Msa1166230 | 0.992324 | 1.297872e-192 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166230 | MtrunA17_Chr7g0268961 | 98.073 | 467 | 8 | 1 | 1 | 466 | 24 | 490 | 0.0 | 961 |
| Msa1166230 | MtrunA17_Chr1g0191991 | 62.893 | 318 | 88 | 7 | 9 | 314 | 73 | 372 | 2.07e-123 | 370 |
| Msa1166230 | MtrunA17_Chr2g0330171 | 55.667 | 300 | 83 | 5 | 9 | 293 | 56 | 320 | 1.08e-106 | 325 |
| Msa1166230 | MtrunA17_Chr8g0342421 | 54.294 | 326 | 119 | 7 | 9 | 321 | 72 | 380 | 1.53e-104 | 321 |
| Msa1166230 | MtrunA17_Chr7g0263941 | 51.821 | 357 | 123 | 10 | 9 | 351 | 44 | 365 | 1.24e-103 | 315 |
| Msa1166230 | MtrunA17_Chr4g0040571 | 50.000 | 360 | 108 | 8 | 9 | 297 | 49 | 407 | 3.16e-103 | 317 |
| Msa1166230 | MtrunA17_Chr8g0373541 | 85.621 | 153 | 22 | 0 | 9 | 161 | 43 | 195 | 8.30e-102 | 314 |
| Msa1166230 | MtrunA17_Chr1g0185121 | 55.518 | 299 | 117 | 4 | 9 | 302 | 50 | 337 | 2.17e-101 | 310 |
| Msa1166230 | MtrunA17_Chr1g0181381 | 82.822 | 163 | 27 | 1 | 9 | 170 | 48 | 210 | 7.39e-101 | 311 |
| Msa1166230 | MtrunA17_Chr1g0210821 | 82.353 | 153 | 27 | 0 | 9 | 161 | 54 | 206 | 2.56e-98 | 306 |
| Msa1166230 | MtrunA17_Chr1g0163001 | 82.895 | 152 | 26 | 0 | 10 | 161 | 54 | 205 | 7.92e-97 | 301 |
| Msa1166230 | MtrunA17_Chr1g0199101 | 82.000 | 150 | 27 | 0 | 9 | 158 | 57 | 206 | 9.70e-97 | 301 |
| Msa1166230 | MtrunA17_Chr4g0029521 | 81.935 | 155 | 27 | 1 | 9 | 162 | 48 | 202 | 1.36e-96 | 300 |
| Msa1166230 | MtrunA17_Chr1g0162971 | 79.085 | 153 | 32 | 0 | 9 | 161 | 51 | 203 | 2.59e-95 | 295 |
| Msa1166230 | MtrunA17_Chr1g0151351 | 49.840 | 313 | 107 | 6 | 9 | 315 | 51 | 319 | 1.48e-94 | 293 |
| Msa1166230 | MtrunA17_Chr2g0326381 | 77.419 | 155 | 34 | 1 | 9 | 162 | 42 | 196 | 2.50e-92 | 286 |
| Msa1166230 | MtrunA17_Chr3g0141431 | 49.045 | 314 | 111 | 7 | 9 | 297 | 32 | 321 | 1.61e-89 | 278 |
| Msa1166230 | MtrunA17_Chr2g0324991 | 84.733 | 131 | 20 | 0 | 10 | 140 | 3 | 133 | 2.87e-83 | 253 |
| Msa1166230 | MtrunA17_Chr8g0375521 | 67.123 | 146 | 46 | 2 | 9 | 152 | 37 | 182 | 7.72e-69 | 225 |
| Msa1166230 | MtrunA17_Chr6g0479921 | 65.068 | 146 | 50 | 1 | 9 | 153 | 39 | 184 | 1.28e-68 | 226 |
| Msa1166230 | MtrunA17_Chr1g0200421 | 33.333 | 177 | 97 | 6 | 13 | 173 | 236 | 407 | 6.20e-24 | 104 |
| Msa1166230 | MtrunA17_Chr2g0320341 | 34.000 | 150 | 85 | 3 | 13 | 148 | 229 | 378 | 7.82e-23 | 100 |
| Msa1166230 | MtrunA17_Chr3g0123941 | 35.762 | 151 | 89 | 3 | 9 | 151 | 118 | 268 | 9.10e-23 | 99.0 |
| Msa1166230 | MtrunA17_Chr7g0258011 | 34.132 | 167 | 86 | 6 | 10 | 159 | 177 | 336 | 3.13e-21 | 94.7 |
| Msa1166230 | MtrunA17_Chr8g0382121 | 34.459 | 148 | 86 | 4 | 12 | 148 | 109 | 256 | 1.18e-20 | 92.4 |
| Msa1166230 | MtrunA17_Chr8g0352011 | 34.524 | 168 | 84 | 8 | 10 | 159 | 167 | 326 | 1.46e-20 | 92.8 |
| Msa1166230 | MtrunA17_Chr5g0422571 | 36.806 | 144 | 78 | 6 | 22 | 154 | 108 | 249 | 1.60e-20 | 91.7 |
| Msa1166230 | MtrunA17_Chr1g0173841 | 35.099 | 151 | 82 | 5 | 10 | 151 | 216 | 359 | 6.34e-20 | 91.3 |
| Msa1166230 | MtrunA17_Chr1g0198651 | 33.537 | 164 | 86 | 7 | 22 | 164 | 109 | 270 | 1.29e-19 | 89.0 |
| Msa1166230 | MtrunA17_Chr2g0328921 | 35.526 | 152 | 80 | 7 | 10 | 151 | 139 | 282 | 1.86e-19 | 89.0 |
| Msa1166230 | MtrunA17_Chr4g0026521 | 35.971 | 139 | 79 | 4 | 22 | 151 | 125 | 262 | 4.37e-19 | 87.4 |
| Msa1166230 | MtrunA17_Chr2g0321291 | 35.252 | 139 | 80 | 4 | 22 | 151 | 140 | 277 | 3.58e-18 | 85.1 |
| Msa1166230 | MtrunA17_Chr4g0053341 | 33.553 | 152 | 83 | 6 | 10 | 151 | 75 | 218 | 3.70e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166230 | AT3G50700.1 | 54.180 | 323 | 118 | 6 | 9 | 310 | 44 | 357 | 2.62e-106 | 323 |
| Msa1166230 | AT1G03840.1 | 85.806 | 155 | 22 | 0 | 9 | 163 | 51 | 205 | 4.17e-100 | 309 |
| Msa1166230 | AT1G03840.2 | 85.161 | 155 | 23 | 0 | 9 | 163 | 49 | 203 | 2.20e-99 | 307 |
| Msa1166230 | AT5G44160.2 | 72.632 | 190 | 44 | 2 | 8 | 189 | 7 | 196 | 1.29e-98 | 303 |
| Msa1166230 | AT5G66730.1 | 84.314 | 153 | 24 | 0 | 9 | 161 | 42 | 194 | 1.58e-98 | 305 |
| Msa1166230 | AT5G44160.1 | 73.016 | 189 | 43 | 2 | 9 | 189 | 47 | 235 | 5.65e-98 | 302 |
| Msa1166230 | AT1G55110.3 | 83.871 | 155 | 24 | 1 | 9 | 162 | 73 | 227 | 2.63e-97 | 300 |
| Msa1166230 | AT1G55110.1 | 83.871 | 155 | 24 | 1 | 9 | 162 | 73 | 227 | 2.63e-97 | 300 |
| Msa1166230 | AT1G55110.2 | 83.871 | 155 | 24 | 1 | 9 | 162 | 73 | 227 | 2.63e-97 | 300 |
| Msa1166230 | AT1G14580.1 | 81.699 | 153 | 28 | 0 | 9 | 161 | 63 | 215 | 3.58e-97 | 300 |
| Msa1166230 | AT1G14580.2 | 81.699 | 153 | 28 | 0 | 9 | 161 | 63 | 215 | 3.58e-97 | 300 |
| Msa1166230 | AT1G14580.3 | 81.699 | 153 | 28 | 0 | 9 | 161 | 77 | 229 | 5.99e-97 | 300 |
| Msa1166230 | AT2G02070.2 | 81.529 | 157 | 29 | 0 | 12 | 168 | 65 | 221 | 6.79e-97 | 304 |
| Msa1166230 | AT2G02070.1 | 81.529 | 157 | 29 | 0 | 12 | 168 | 65 | 221 | 6.79e-97 | 304 |
| Msa1166230 | AT2G02080.1 | 81.046 | 153 | 29 | 0 | 9 | 161 | 64 | 216 | 1.29e-96 | 300 |
| Msa1166230 | AT2G02080.4 | 81.046 | 153 | 29 | 0 | 9 | 161 | 64 | 216 | 1.29e-96 | 300 |
| Msa1166230 | AT2G02080.5 | 81.046 | 153 | 29 | 0 | 9 | 161 | 64 | 216 | 1.29e-96 | 300 |
| Msa1166230 | AT2G02080.3 | 81.046 | 153 | 29 | 0 | 9 | 161 | 64 | 216 | 1.29e-96 | 300 |
| Msa1166230 | AT5G03150.1 | 83.871 | 155 | 24 | 1 | 9 | 162 | 63 | 217 | 1.92e-96 | 300 |
| Msa1166230 | AT3G45260.2 | 81.818 | 154 | 27 | 1 | 9 | 161 | 49 | 202 | 3.65e-95 | 295 |
| Msa1166230 | AT3G45260.1 | 81.818 | 154 | 27 | 1 | 9 | 161 | 49 | 202 | 3.65e-95 | 295 |
| Msa1166230 | AT3G13810.6 | 83.766 | 154 | 24 | 1 | 9 | 161 | 61 | 214 | 1.81e-94 | 294 |
| Msa1166230 | AT3G13810.5 | 83.766 | 154 | 24 | 1 | 9 | 161 | 75 | 228 | 2.71e-94 | 294 |
| Msa1166230 | AT3G13810.4 | 83.766 | 154 | 24 | 1 | 9 | 161 | 80 | 233 | 2.89e-94 | 294 |
| Msa1166230 | AT3G13810.1 | 83.766 | 154 | 24 | 1 | 9 | 161 | 80 | 233 | 2.89e-94 | 294 |
| Msa1166230 | AT3G13810.3 | 81.875 | 160 | 27 | 2 | 4 | 161 | 61 | 220 | 8.64e-94 | 293 |
| Msa1166230 | AT3G13810.2 | 81.875 | 160 | 27 | 2 | 4 | 161 | 75 | 234 | 1.11e-93 | 293 |
| Msa1166230 | AT4G02670.1 | 75.439 | 171 | 38 | 2 | 9 | 175 | 63 | 233 | 1.34e-93 | 289 |
| Msa1166230 | AT4G02670.2 | 75.439 | 171 | 38 | 2 | 9 | 175 | 65 | 235 | 1.52e-93 | 289 |
| Msa1166230 | AT5G60470.1 | 75.926 | 162 | 36 | 2 | 3 | 161 | 37 | 198 | 5.83e-92 | 286 |
| Msa1166230 | AT5G60470.2 | 78.571 | 154 | 32 | 1 | 9 | 161 | 54 | 207 | 1.05e-91 | 286 |
| Msa1166230 | AT5G60470.3 | 78.571 | 154 | 32 | 1 | 9 | 161 | 50 | 203 | 1.20e-91 | 286 |
| Msa1166230 | AT2G02080.6 | 81.295 | 139 | 26 | 0 | 23 | 161 | 1 | 139 | 6.22e-89 | 278 |
| Msa1166230 | AT2G02080.2 | 81.295 | 139 | 26 | 0 | 23 | 161 | 1 | 139 | 6.22e-89 | 278 |
| Msa1166230 | AT1G68130.1 | 67.123 | 146 | 46 | 2 | 9 | 152 | 51 | 196 | 4.42e-69 | 226 |
| Msa1166230 | AT2G01940.1 | 66.216 | 148 | 48 | 2 | 9 | 154 | 54 | 201 | 9.78e-69 | 226 |
| Msa1166230 | AT1G25250.1 | 65.306 | 147 | 48 | 2 | 9 | 152 | 20 | 166 | 5.95e-68 | 221 |
| Msa1166230 | AT1G25250.3 | 65.306 | 147 | 48 | 2 | 9 | 152 | 43 | 189 | 7.28e-68 | 222 |
| Msa1166230 | AT2G01940.3 | 65.101 | 149 | 49 | 3 | 9 | 154 | 54 | 202 | 8.96e-65 | 216 |
| Msa1166230 | AT1G68130.2 | 64.545 | 110 | 37 | 2 | 45 | 152 | 1 | 110 | 2.41e-46 | 164 |
| Msa1166230 | AT2G01940.2 | 64.286 | 112 | 38 | 2 | 45 | 154 | 1 | 112 | 3.71e-46 | 164 |
| Msa1166230 | AT1G25250.2 | 62.162 | 111 | 39 | 2 | 45 | 152 | 1 | 111 | 8.42e-45 | 159 |
| Msa1166230 | AT5G22890.1 | 36.000 | 150 | 82 | 4 | 13 | 148 | 202 | 351 | 1.67e-23 | 102 |
| Msa1166230 | AT1G34370.3 | 33.333 | 153 | 88 | 3 | 13 | 151 | 19 | 171 | 3.85e-23 | 99.4 |
| Msa1166230 | AT1G34370.2 | 33.333 | 153 | 88 | 3 | 13 | 151 | 229 | 381 | 1.11e-22 | 101 |
| Msa1166230 | AT1G34370.1 | 33.333 | 153 | 88 | 3 | 13 | 151 | 229 | 381 | 1.11e-22 | 101 |
| Msa1166230 | AT3G20880.1 | 37.143 | 140 | 76 | 6 | 22 | 151 | 250 | 387 | 7.68e-20 | 92.0 |
| Msa1166230 | AT1G51220.1 | 33.775 | 151 | 84 | 5 | 10 | 151 | 166 | 309 | 1.16e-19 | 90.5 |
| Msa1166230 | AT3G57670.1 | 34.437 | 151 | 83 | 5 | 10 | 151 | 205 | 348 | 3.37e-19 | 89.7 |
| Msa1166230 | AT1G13290.1 | 35.862 | 145 | 79 | 7 | 22 | 154 | 95 | 237 | 6.30e-19 | 87.8 |
| Msa1166230 | AT1G08290.1 | 33.540 | 161 | 88 | 7 | 8 | 151 | 154 | 312 | 1.27e-17 | 84.3 |
| Msa1166230 | AT1G34790.1 | 30.968 | 155 | 95 | 5 | 7 | 151 | 124 | 276 | 4.67e-17 | 82.0 |
Find 96 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGTCCTAATCATGTTTC+TGG | 0.126378 | 7_4:+58297266 | Msa1166230:CDS |
| ATTATCTCCAACAACATTAA+TGG | 0.225501 | 7_4:+58296014 | Msa1166230:CDS |
| TGCATTTGGCTTTGCAAGTT+TGG | 0.264117 | 7_4:-58296846 | None:intergenic |
| CAGCAATGGAGAAATCAATT+TGG | 0.264385 | 7_4:+58297702 | Msa1166230:CDS |
| ATTGCTGTACCTAGAAAATA+TGG | 0.277676 | 7_4:-58296376 | None:intergenic |
| GTCCATGATTTCTTGGGAAT+TGG | 0.293303 | 7_4:+58297569 | Msa1166230:CDS |
| GGCAACAGTCCATGATTTCT+TGG | 0.325473 | 7_4:+58297562 | Msa1166230:CDS |
| TTGGAGCATGTTCTTGAGTT+GGG | 0.332417 | 7_4:-58296959 | None:intergenic |
| GTAATTGAAGCTGTTGGAAT+TGG | 0.337918 | 7_4:-58297096 | None:intergenic |
| TCTACAATGAATAATGATAT+TGG | 0.357969 | 7_4:+58297461 | Msa1166230:CDS |
| AATAATGATATTGGAATGTT+TGG | 0.379983 | 7_4:+58297470 | Msa1166230:CDS |
| TTTGTTGCCATTAATGTTGT+TGG | 0.382808 | 7_4:-58296021 | None:intergenic |
| TCTGAGGAAGTGTTGGAAAC+AGG | 0.383083 | 7_4:-58296897 | None:intergenic |
| GCAAACATGGCGAGAAGAAA+TGG | 0.383718 | 7_4:+58296256 | Msa1166230:CDS |
| AGCAATGGAGAAATCAATTT+GGG | 0.385884 | 7_4:+58297703 | Msa1166230:CDS |
| GTTCATAAGAGGGTTGGTTT+TGG | 0.388862 | 7_4:-58297310 | None:intergenic |
| AAGTGCAGATGTGAAGAAAA+AGG | 0.388942 | 7_4:+58296146 | Msa1166230:CDS |
| CGTGCATTAGGTGACCTTAC+TGG | 0.399967 | 7_4:+58296213 | Msa1166230:CDS |
| CACAATCCAGCTCGTGCATT+AGG | 0.407149 | 7_4:+58296201 | Msa1166230:CDS |
| ATTTCTTCTCGCCATGTTTG+CGG | 0.411811 | 7_4:-58296254 | None:intergenic |
| GCATGCCACTGGTTAATCCT+TGG | 0.413966 | 7_4:-58296821 | None:intergenic |
| TAGAGATAGGATCATGCATT+TGG | 0.417757 | 7_4:-58296860 | None:intergenic |
| TGGATTAAAGTGTTCATAAG+AGG | 0.422907 | 7_4:-58297321 | None:intergenic |
| TGAACCACAGCAACAAAGAT+TGG | 0.429733 | 7_4:+58297613 | Msa1166230:CDS |
| TTTAGCGGCATGGTAGAGAT+AGG | 0.433827 | 7_4:-58296873 | None:intergenic |
| ACCAGAAAACATGTGGTACT+AGG | 0.442303 | 7_4:+58296331 | Msa1166230:CDS |
| CATGATTTCTTGGGAATTGG+AGG | 0.445123 | 7_4:+58297572 | Msa1166230:CDS |
| TTCGGTGTAACTGAAGATTC+TGG | 0.450568 | 7_4:-58296086 | None:intergenic |
| ATGGAAGATTGTGACCTCTT+CGG | 0.458250 | 7_4:-58296104 | None:intergenic |
| GCAACAGTCCATGATTTCTT+GGG | 0.459975 | 7_4:+58297563 | Msa1166230:CDS |
| CATGCCACCACATGCATTGT+TGG | 0.462483 | 7_4:-58296997 | None:intergenic |
| CTCCAATTCCCAAGAAATCA+TGG | 0.464360 | 7_4:-58297571 | None:intergenic |
| AGTTGAAGGGTTGAAGAAGA+TGG | 0.465582 | 7_4:-58297068 | None:intergenic |
| ATAGAACCAGAAACATGATT+AGG | 0.468762 | 7_4:-58297272 | None:intergenic |
| GGTGCTACTGCAAGCAATAG+TGG | 0.468938 | 7_4:+58297203 | Msa1166230:CDS |
| TCTAACATGGCTGGTGTTAG+TGG | 0.470215 | 7_4:+58297359 | Msa1166230:CDS |
| GATACGCTGTTCAATCAGAT+TGG | 0.476113 | 7_4:+58296301 | Msa1166230:CDS |
| TGGAATTGGAACTAAGTTGA+AGG | 0.481061 | 7_4:-58297082 | None:intergenic |
| GTTGGAGCATGTTCTTGAGT+TGG | 0.484302 | 7_4:-58296960 | None:intergenic |
| GCTTCCAATCTTTGTTGCTG+TGG | 0.487682 | 7_4:-58297617 | None:intergenic |
| AATTGTTCAAATTTGATACA+TGG | 0.491018 | 7_4:+58297530 | Msa1166230:CDS |
| AGCATTAAGTCAACAGAGGT+TGG | 0.491230 | 7_4:+58297637 | Msa1166230:CDS |
| GTTTAATTCTGAGGAAGTGT+TGG | 0.503695 | 7_4:-58296904 | None:intergenic |
| CAAGTTTGGTGGCATGCCAC+TGG | 0.504812 | 7_4:-58296832 | None:intergenic |
| GATATTGGAATGTTTGGTCA+TGG | 0.511947 | 7_4:+58297476 | Msa1166230:CDS |
| ACAATCTTCCATGGAAACTT+AGG | 0.513491 | 7_4:+58296115 | Msa1166230:CDS |
| TAAAGTGTTCATAAGAGGGT+TGG | 0.514305 | 7_4:-58297316 | None:intergenic |
| GATGAAGAATGTTGCACAAG+AGG | 0.514880 | 7_4:+58297502 | Msa1166230:CDS |
| TTGGTTGATCTGAATGATGT+TGG | 0.518626 | 7_4:-58296978 | None:intergenic |
| CGCTGTTCAATCAGATTGGA+AGG | 0.519515 | 7_4:+58296305 | Msa1166230:CDS |
| GTTCTTTGCCTAAGTTTCCA+TGG | 0.520812 | 7_4:-58296123 | None:intergenic |
| ATTGAAGTAATTGAAGCTGT+TGG | 0.522656 | 7_4:-58297102 | None:intergenic |
| GAAAAGCTTTGTTAGTAGCA+TGG | 0.526473 | 7_4:+58297244 | Msa1166230:CDS |
| TGGAGGACTAATTGCTGGCA+TGG | 0.527954 | 7_4:+58297136 | Msa1166230:CDS |
| CCAGAAAACATGTGGTACTA+GGG | 0.530598 | 7_4:+58296332 | Msa1166230:CDS |
| ATTTGGCTTTGCAAGTTTGG+TGG | 0.531585 | 7_4:-58296843 | None:intergenic |
| TGGTGAACACATGATGGCTC+AGG | 0.534078 | 7_4:-58296180 | None:intergenic |
| ATAGTCATTGTTTAATTCTG+AGG | 0.543313 | 7_4:-58296913 | None:intergenic |
| GGTTGAAGAAGATGGAGGCA+AGG | 0.548129 | 7_4:-58297060 | None:intergenic |
| ATGGCTGGTGTTAGTGGTGG+AGG | 0.549455 | 7_4:+58297365 | Msa1166230:CDS |
| TGCTGGCATGGCTCAAATGT+CGG | 0.549729 | 7_4:+58297148 | Msa1166230:CDS |
| AGGTCACCTAATGCACGAGC+TGG | 0.556111 | 7_4:-58296207 | None:intergenic |
| GGCATGTTCTCAACTAGTGC+AGG | 0.558296 | 7_4:+58297014 | Msa1166230:CDS |
| TCATCATCATCTTCCACATG+AGG | 0.560330 | 7_4:+58297676 | Msa1166230:CDS |
| TGGAGCATGTTCTTGAGTTG+GGG | 0.560364 | 7_4:-58296958 | None:intergenic |
| CATGAATTATCTAACATGGC+TGG | 0.563778 | 7_4:+58297350 | Msa1166230:CDS |
| GGATTAAAGTGTTCATAAGA+GGG | 0.569779 | 7_4:-58297320 | None:intergenic |
| GAAGAGGTCACAATCTTCCA+TGG | 0.574717 | 7_4:+58296106 | Msa1166230:CDS |
| TCCATTGCTGAATCCTCATG+TGG | 0.577321 | 7_4:-58297689 | None:intergenic |
| TGCATCACAGAATGCTCTGT+GGG | 0.579430 | 7_4:-58296772 | None:intergenic |
| AATAGATCCTACTGCTGAAG+TGG | 0.580873 | 7_4:+58295987 | Msa1166230:CDS |
| AGGGAATACAAATGTGATTG+TGG | 0.590905 | 7_4:+58296351 | Msa1166230:CDS |
| GTGCTACTGCAAGCAATAGT+GGG | 0.592488 | 7_4:+58297204 | Msa1166230:CDS |
| TTAGATAATTCATGCTGCAG+TGG | 0.592945 | 7_4:-58297341 | None:intergenic |
| GGAATTGGAACTAAGTTGAA+GGG | 0.596686 | 7_4:-58297081 | None:intergenic |
| AATGCAACCACTTCAGCAGT+AGG | 0.598028 | 7_4:-58295994 | None:intergenic |
| TGAAGGGTTGAAGAAGATGG+AGG | 0.598478 | 7_4:-58297065 | None:intergenic |
| TCCACATGAGGATTCAGCAA+TGG | 0.616123 | 7_4:+58297688 | Msa1166230:CDS |
| CTAATGCACGAGCTGGATTG+TGG | 0.622870 | 7_4:-58296200 | None:intergenic |
| AATCTTCAGTTACACCGAAG+AGG | 0.641075 | 7_4:+58296090 | Msa1166230:CDS |
| ATGCAACAAGGGATTTCAGA+GGG | 0.641353 | 7_4:+58296062 | Msa1166230:CDS |
| AACATGGCTGGTGTTAGTGG+TGG | 0.642397 | 7_4:+58297362 | Msa1166230:CDS |
| TCAACCAACAATGCATGTGG+TGG | 0.656711 | 7_4:+58296993 | Msa1166230:CDS |
| TATGCAACAAGGGATTTCAG+AGG | 0.657445 | 7_4:+58296061 | Msa1166230:CDS |
| GGATTGTGGTGAACACATGA+TGG | 0.659836 | 7_4:-58296186 | None:intergenic |
| AGATCAACCAACAATGCATG+TGG | 0.667821 | 7_4:+58296990 | Msa1166230:CDS |
| GCAGCATGAATTATCTAACA+TGG | 0.668171 | 7_4:+58297346 | Msa1166230:CDS |
| TGGAAGCATTAAGTCAACAG+AGG | 0.675968 | 7_4:+58297633 | Msa1166230:CDS |
| TTTGATACATGGAAGTGATG+TGG | 0.683521 | 7_4:+58297541 | Msa1166230:CDS |
| ATGCATCACAGAATGCTCTG+TGG | 0.684328 | 7_4:-58296773 | None:intergenic |
| GTGTGTGAGATATGCAACAA+GGG | 0.694352 | 7_4:+58296051 | Msa1166230:CDS |
| GAAAACAACAGAGTAAACCA+AGG | 0.707069 | 7_4:+58296804 | Msa1166230:CDS |
| AAGGCTCACCAGAAAACATG+TGG | 0.716558 | 7_4:+58296324 | Msa1166230:CDS |
| GTAAACCAAGGATTAACCAG+TGG | 0.716826 | 7_4:+58296816 | Msa1166230:CDS |
| GGTGAACACATGATGGCTCA+GGG | 0.717782 | 7_4:-58296179 | None:intergenic |
| TGTGTGTGAGATATGCAACA+AGG | 0.725588 | 7_4:+58296050 | Msa1166230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATAATTTGCATAAT+TGG | + | chr7_4:58296565-58296584 | Msa1166230:intron | 10.0% |
| !!! | TAATTAATAATTTGCATAAT+TGG | + | chr7_4:58296565-58296584 | Msa1166230:intron | 10.0% |
| !!! | AAAATATGTTTTCCATTTTT+AGG | - | chr7_4:58296512-58296531 | None:intergenic | 15.0% |
| !!! | AAAATATGTTTTCCATTTTT+AGG | - | chr7_4:58296512-58296531 | None:intergenic | 15.0% |
| !!! | TAATATTTAGAATGCATGTT+TGG | - | chr7_4:58296687-58296706 | None:intergenic | 20.0% |
| !! | TACTTCAATGACAATAAAAA+TGG | + | chr7_4:58297116-58297135 | Msa1166230:CDS | 20.0% |
| !! | TCTACAATGAATAATGATAT+TGG | + | chr7_4:58297461-58297480 | Msa1166230:CDS | 20.0% |
| !! | AATAATGATATTGGAATGTT+TGG | + | chr7_4:58297470-58297489 | Msa1166230:CDS | 20.0% |
| !! | AATTGTTCAAATTTGATACA+TGG | + | chr7_4:58297530-58297549 | Msa1166230:CDS | 20.0% |
| !!! | TAATATTTAGAATGCATGTT+TGG | - | chr7_4:58296687-58296706 | None:intergenic | 20.0% |
| !! | TACTTCAATGACAATAAAAA+TGG | + | chr7_4:58297116-58297135 | Msa1166230:CDS | 20.0% |
| !! | TCTACAATGAATAATGATAT+TGG | + | chr7_4:58297461-58297480 | Msa1166230:CDS | 20.0% |
| !! | AATAATGATATTGGAATGTT+TGG | + | chr7_4:58297470-58297489 | Msa1166230:CDS | 20.0% |
| !! | AATTGTTCAAATTTGATACA+TGG | + | chr7_4:58297530-58297549 | Msa1166230:CDS | 20.0% |
| ! | ATTATCTCCAACAACATTAA+TGG | + | chr7_4:58296014-58296033 | Msa1166230:CDS | 25.0% |
| ! | TTTGTTACAAATATTTGTGC+AGG | + | chr7_4:58296436-58296455 | Msa1166230:intron | 25.0% |
| ! | TGAAACAAAGTGAATACAAT+AGG | + | chr7_4:58296486-58296505 | Msa1166230:intron | 25.0% |
| ! | AATTGGATTGAAATCGAATT+TGG | + | chr7_4:58296582-58296601 | Msa1166230:intron | 25.0% |
| ! | ATAGTCATTGTTTAATTCTG+AGG | - | chr7_4:58296916-58296935 | None:intergenic | 25.0% |
| ! | TTCAATGACAATAAAAATGG+AGG | + | chr7_4:58297119-58297138 | Msa1166230:CDS | 25.0% |
| !!! | GTTGTTCTTTTTGAAACAAT+TGG | - | chr7_4:58297403-58297422 | None:intergenic | 25.0% |
| ! | ATTATCTCCAACAACATTAA+TGG | + | chr7_4:58296014-58296033 | Msa1166230:CDS | 25.0% |
| ! | TTTGTTACAAATATTTGTGC+AGG | + | chr7_4:58296436-58296455 | Msa1166230:intron | 25.0% |
| ! | TGAAACAAAGTGAATACAAT+AGG | + | chr7_4:58296486-58296505 | Msa1166230:intron | 25.0% |
| ! | AATTGGATTGAAATCGAATT+TGG | + | chr7_4:58296582-58296601 | Msa1166230:intron | 25.0% |
| ! | ATAGTCATTGTTTAATTCTG+AGG | - | chr7_4:58296916-58296935 | None:intergenic | 25.0% |
| ! | TTCAATGACAATAAAAATGG+AGG | + | chr7_4:58297119-58297138 | Msa1166230:CDS | 25.0% |
| !!! | GTTGTTCTTTTTGAAACAAT+TGG | - | chr7_4:58297403-58297422 | None:intergenic | 25.0% |
| TTTGTTGCCATTAATGTTGT+TGG | - | chr7_4:58296024-58296043 | None:intergenic | 30.0% | |
| !!! | AATGTTTTTTGATGCCAGTA+AGG | - | chr7_4:58296230-58296249 | None:intergenic | 30.0% |
| ! | ATTGTGGAACCATATTTTCT+AGG | + | chr7_4:58296367-58296386 | Msa1166230:CDS | 30.0% |
| ATTGCTGTACCTAGAAAATA+TGG | - | chr7_4:58296379-58296398 | None:intergenic | 30.0% | |
| GAATACAATAGGCCTAAAAA+TGG | + | chr7_4:58296497-58296516 | Msa1166230:intron | 30.0% | |
| CCTGTGTTATACAGAAAAAT+AGG | - | chr7_4:58296736-58296755 | None:intergenic | 30.0% | |
| !! | CCTATTTTTCTGTATAACAC+AGG | + | chr7_4:58296733-58296752 | Msa1166230:intron | 30.0% |
| ATTGAAGTAATTGAAGCTGT+TGG | - | chr7_4:58297105-58297124 | None:intergenic | 30.0% | |
| ATAGAACCAGAAACATGATT+AGG | - | chr7_4:58297275-58297294 | None:intergenic | 30.0% | |
| ! | GGATTAAAGTGTTCATAAGA+GGG | - | chr7_4:58297323-58297342 | None:intergenic | 30.0% |
| ! | TGGATTAAAGTGTTCATAAG+AGG | - | chr7_4:58297324-58297343 | None:intergenic | 30.0% |
| AGCAATGGAGAAATCAATTT+GGG | + | chr7_4:58297703-58297722 | Msa1166230:CDS | 30.0% | |
| TTTGTTGCCATTAATGTTGT+TGG | - | chr7_4:58296024-58296043 | None:intergenic | 30.0% | |
| !!! | AATGTTTTTTGATGCCAGTA+AGG | - | chr7_4:58296230-58296249 | None:intergenic | 30.0% |
| ! | ATTGTGGAACCATATTTTCT+AGG | + | chr7_4:58296367-58296386 | Msa1166230:CDS | 30.0% |
| ATTGCTGTACCTAGAAAATA+TGG | - | chr7_4:58296379-58296398 | None:intergenic | 30.0% | |
| GAATACAATAGGCCTAAAAA+TGG | + | chr7_4:58296497-58296516 | Msa1166230:intron | 30.0% | |
| CCTGTGTTATACAGAAAAAT+AGG | - | chr7_4:58296736-58296755 | None:intergenic | 30.0% | |
| !! | CCTATTTTTCTGTATAACAC+AGG | + | chr7_4:58296733-58296752 | Msa1166230:intron | 30.0% |
| ATTGAAGTAATTGAAGCTGT+TGG | - | chr7_4:58297105-58297124 | None:intergenic | 30.0% | |
| ATAGAACCAGAAACATGATT+AGG | - | chr7_4:58297275-58297294 | None:intergenic | 30.0% | |
| ! | GGATTAAAGTGTTCATAAGA+GGG | - | chr7_4:58297323-58297342 | None:intergenic | 30.0% |
| ! | TGGATTAAAGTGTTCATAAG+AGG | - | chr7_4:58297324-58297343 | None:intergenic | 30.0% |
| AGCAATGGAGAAATCAATTT+GGG | + | chr7_4:58297703-58297722 | Msa1166230:CDS | 30.0% | |
| ACAATCTTCCATGGAAACTT+AGG | + | chr7_4:58296115-58296134 | Msa1166230:CDS | 35.0% | |
| AAGTGCAGATGTGAAGAAAA+AGG | + | chr7_4:58296146-58296165 | Msa1166230:CDS | 35.0% | |
| !! | AAACATTTTAGCCGCAAACA+TGG | + | chr7_4:58296243-58296262 | Msa1166230:CDS | 35.0% |
| AGGGAATACAAATGTGATTG+TGG | + | chr7_4:58296351-58296370 | Msa1166230:CDS | 35.0% | |
| !!! | TTTTCCGCCTTATTTTCACA+CGG | + | chr7_4:58296410-58296429 | Msa1166230:intron | 35.0% |
| ! | AGAATGCATGTTTGGAATCA+GGG | - | chr7_4:58296679-58296698 | None:intergenic | 35.0% |
| ! | TAGAATGCATGTTTGGAATC+AGG | - | chr7_4:58296680-58296699 | None:intergenic | 35.0% |
| GAAAACAACAGAGTAAACCA+AGG | + | chr7_4:58296804-58296823 | Msa1166230:CDS | 35.0% | |
| TAGAGATAGGATCATGCATT+TGG | - | chr7_4:58296863-58296882 | None:intergenic | 35.0% | |
| ! | GTTTAATTCTGAGGAAGTGT+TGG | - | chr7_4:58296907-58296926 | None:intergenic | 35.0% |
| ! | GGGATCTTAGTGAGTTTTTA+GGG | - | chr7_4:58296941-58296960 | None:intergenic | 35.0% |
| TTGGTTGATCTGAATGATGT+TGG | - | chr7_4:58296981-58297000 | None:intergenic | 35.0% | |
| ! | GGAATTGGAACTAAGTTGAA+GGG | - | chr7_4:58297084-58297103 | None:intergenic | 35.0% |
| ! | TGGAATTGGAACTAAGTTGA+AGG | - | chr7_4:58297085-58297104 | None:intergenic | 35.0% |
| GTAATTGAAGCTGTTGGAAT+TGG | - | chr7_4:58297099-58297118 | None:intergenic | 35.0% | |
| AAAAATGGAGGACTAATTGC+TGG | + | chr7_4:58297131-58297150 | Msa1166230:CDS | 35.0% | |
| !!! | TGCTGCTTTTTGTAGTAAAG+CGG | - | chr7_4:58297177-58297196 | None:intergenic | 35.0% |
| ACTACAAAAAGCAGCACAAA+TGG | + | chr7_4:58297181-58297200 | Msa1166230:CDS | 35.0% | |
| CTACAAAAAGCAGCACAAAT+GGG | + | chr7_4:58297182-58297201 | Msa1166230:CDS | 35.0% | |
| ! | AACAAAGCTTTTCTGCATCA+TGG | - | chr7_4:58297237-58297256 | None:intergenic | 35.0% |
| !! | GAAAAGCTTTGTTAGTAGCA+TGG | + | chr7_4:58297244-58297263 | Msa1166230:CDS | 35.0% |
| GTTAGTCCTAATCATGTTTC+TGG | + | chr7_4:58297266-58297285 | Msa1166230:CDS | 35.0% | |
| ! | TAAAGTGTTCATAAGAGGGT+TGG | - | chr7_4:58297319-58297338 | None:intergenic | 35.0% |
| TTAGATAATTCATGCTGCAG+TGG | - | chr7_4:58297344-58297363 | None:intergenic | 35.0% | |
| GCAGCATGAATTATCTAACA+TGG | + | chr7_4:58297346-58297365 | Msa1166230:CDS | 35.0% | |
| CATGAATTATCTAACATGGC+TGG | + | chr7_4:58297350-58297369 | Msa1166230:CDS | 35.0% | |
| GATATTGGAATGTTTGGTCA+TGG | + | chr7_4:58297476-58297495 | Msa1166230:CDS | 35.0% | |
| TTTGATACATGGAAGTGATG+TGG | + | chr7_4:58297541-58297560 | Msa1166230:CDS | 35.0% | |
| CAGCAATGGAGAAATCAATT+TGG | + | chr7_4:58297702-58297721 | Msa1166230:CDS | 35.0% | |
| ACAATCTTCCATGGAAACTT+AGG | + | chr7_4:58296115-58296134 | Msa1166230:CDS | 35.0% | |
| AAGTGCAGATGTGAAGAAAA+AGG | + | chr7_4:58296146-58296165 | Msa1166230:CDS | 35.0% | |
| !! | AAACATTTTAGCCGCAAACA+TGG | + | chr7_4:58296243-58296262 | Msa1166230:CDS | 35.0% |
| AGGGAATACAAATGTGATTG+TGG | + | chr7_4:58296351-58296370 | Msa1166230:CDS | 35.0% | |
| !!! | TTTTCCGCCTTATTTTCACA+CGG | + | chr7_4:58296410-58296429 | Msa1166230:intron | 35.0% |
| ! | AGAATGCATGTTTGGAATCA+GGG | - | chr7_4:58296679-58296698 | None:intergenic | 35.0% |
| ! | TAGAATGCATGTTTGGAATC+AGG | - | chr7_4:58296680-58296699 | None:intergenic | 35.0% |
| GAAAACAACAGAGTAAACCA+AGG | + | chr7_4:58296804-58296823 | Msa1166230:CDS | 35.0% | |
| TAGAGATAGGATCATGCATT+TGG | - | chr7_4:58296863-58296882 | None:intergenic | 35.0% | |
| ! | GTTTAATTCTGAGGAAGTGT+TGG | - | chr7_4:58296907-58296926 | None:intergenic | 35.0% |
| ! | GGGATCTTAGTGAGTTTTTA+GGG | - | chr7_4:58296941-58296960 | None:intergenic | 35.0% |
| TTGGTTGATCTGAATGATGT+TGG | - | chr7_4:58296981-58297000 | None:intergenic | 35.0% | |
| ! | GGAATTGGAACTAAGTTGAA+GGG | - | chr7_4:58297084-58297103 | None:intergenic | 35.0% |
| ! | TGGAATTGGAACTAAGTTGA+AGG | - | chr7_4:58297085-58297104 | None:intergenic | 35.0% |
| GTAATTGAAGCTGTTGGAAT+TGG | - | chr7_4:58297099-58297118 | None:intergenic | 35.0% | |
| AAAAATGGAGGACTAATTGC+TGG | + | chr7_4:58297131-58297150 | Msa1166230:CDS | 35.0% | |
| !!! | TGCTGCTTTTTGTAGTAAAG+CGG | - | chr7_4:58297177-58297196 | None:intergenic | 35.0% |
| ACTACAAAAAGCAGCACAAA+TGG | + | chr7_4:58297181-58297200 | Msa1166230:CDS | 35.0% | |
| CTACAAAAAGCAGCACAAAT+GGG | + | chr7_4:58297182-58297201 | Msa1166230:CDS | 35.0% | |
| ! | AACAAAGCTTTTCTGCATCA+TGG | - | chr7_4:58297237-58297256 | None:intergenic | 35.0% |
| !! | GAAAAGCTTTGTTAGTAGCA+TGG | + | chr7_4:58297244-58297263 | Msa1166230:CDS | 35.0% |
| GTTAGTCCTAATCATGTTTC+TGG | + | chr7_4:58297266-58297285 | Msa1166230:CDS | 35.0% | |
| ! | TAAAGTGTTCATAAGAGGGT+TGG | - | chr7_4:58297319-58297338 | None:intergenic | 35.0% |
| TTAGATAATTCATGCTGCAG+TGG | - | chr7_4:58297344-58297363 | None:intergenic | 35.0% | |
| GCAGCATGAATTATCTAACA+TGG | + | chr7_4:58297346-58297365 | Msa1166230:CDS | 35.0% | |
| CATGAATTATCTAACATGGC+TGG | + | chr7_4:58297350-58297369 | Msa1166230:CDS | 35.0% | |
| GATATTGGAATGTTTGGTCA+TGG | + | chr7_4:58297476-58297495 | Msa1166230:CDS | 35.0% | |
| TTTGATACATGGAAGTGATG+TGG | + | chr7_4:58297541-58297560 | Msa1166230:CDS | 35.0% | |
| CAGCAATGGAGAAATCAATT+TGG | + | chr7_4:58297702-58297721 | Msa1166230:CDS | 35.0% | |
| AATAGATCCTACTGCTGAAG+TGG | + | chr7_4:58295987-58296006 | Msa1166230:CDS | 40.0% | |
| TGTGTGTGAGATATGCAACA+AGG | + | chr7_4:58296050-58296069 | Msa1166230:CDS | 40.0% | |
| GTGTGTGAGATATGCAACAA+GGG | + | chr7_4:58296051-58296070 | Msa1166230:CDS | 40.0% | |
| TATGCAACAAGGGATTTCAG+AGG | + | chr7_4:58296061-58296080 | Msa1166230:CDS | 40.0% | |
| ATGCAACAAGGGATTTCAGA+GGG | + | chr7_4:58296062-58296081 | Msa1166230:CDS | 40.0% | |
| ! | TTCGGTGTAACTGAAGATTC+TGG | - | chr7_4:58296089-58296108 | None:intergenic | 40.0% |
| AATCTTCAGTTACACCGAAG+AGG | + | chr7_4:58296090-58296109 | Msa1166230:CDS | 40.0% | |
| ATGGAAGATTGTGACCTCTT+CGG | - | chr7_4:58296107-58296126 | None:intergenic | 40.0% | |
| GTTCTTTGCCTAAGTTTCCA+TGG | - | chr7_4:58296126-58296145 | None:intergenic | 40.0% | |
| ATTTCTTCTCGCCATGTTTG+CGG | - | chr7_4:58296257-58296276 | None:intergenic | 40.0% | |
| GATACGCTGTTCAATCAGAT+TGG | + | chr7_4:58296301-58296320 | Msa1166230:CDS | 40.0% | |
| ACCAGAAAACATGTGGTACT+AGG | + | chr7_4:58296331-58296350 | Msa1166230:CDS | 40.0% | |
| CCAGAAAACATGTGGTACTA+GGG | + | chr7_4:58296332-58296351 | Msa1166230:CDS | 40.0% | |
| CAAATCGCCGTGTGAAAATA+AGG | - | chr7_4:58296420-58296439 | None:intergenic | 40.0% | |
| GTAAACCAAGGATTAACCAG+TGG | + | chr7_4:58296816-58296835 | Msa1166230:CDS | 40.0% | |
| !! | ATTTGGCTTTGCAAGTTTGG+TGG | - | chr7_4:58296846-58296865 | None:intergenic | 40.0% |
| !! | TGCATTTGGCTTTGCAAGTT+TGG | - | chr7_4:58296849-58296868 | None:intergenic | 40.0% |
| !! | GTGTTGGAAACAGGTTTTAG+CGG | - | chr7_4:58296891-58296910 | None:intergenic | 40.0% |
| ! | GGGGATCTTAGTGAGTTTTT+AGG | - | chr7_4:58296942-58296961 | None:intergenic | 40.0% |
| TTGGAGCATGTTCTTGAGTT+GGG | - | chr7_4:58296962-58296981 | None:intergenic | 40.0% | |
| AGATCAACCAACAATGCATG+TGG | + | chr7_4:58296990-58297009 | Msa1166230:CDS | 40.0% | |
| ! | AAGATGGAGGCAAGGTTTTT+GGG | - | chr7_4:58297055-58297074 | None:intergenic | 40.0% |
| AGTTGAAGGGTTGAAGAAGA+TGG | - | chr7_4:58297071-58297090 | None:intergenic | 40.0% | |
| !!! | GTTCATAAGAGGGTTGGTTT+TGG | - | chr7_4:58297313-58297332 | None:intergenic | 40.0% |
| GATGAAGAATGTTGCACAAG+AGG | + | chr7_4:58297502-58297521 | Msa1166230:CDS | 40.0% | |
| GCAACAGTCCATGATTTCTT+GGG | + | chr7_4:58297563-58297582 | Msa1166230:CDS | 40.0% | |
| GTCCATGATTTCTTGGGAAT+TGG | + | chr7_4:58297569-58297588 | Msa1166230:CDS | 40.0% | |
| CTCCAATTCCCAAGAAATCA+TGG | - | chr7_4:58297574-58297593 | None:intergenic | 40.0% | |
| CATGATTTCTTGGGAATTGG+AGG | + | chr7_4:58297572-58297591 | Msa1166230:CDS | 40.0% | |
| TGAACCACAGCAACAAAGAT+TGG | + | chr7_4:58297613-58297632 | Msa1166230:CDS | 40.0% | |
| !! | TGGAAGCATTAAGTCAACAG+AGG | + | chr7_4:58297633-58297652 | Msa1166230:CDS | 40.0% |
| AGCATTAAGTCAACAGAGGT+TGG | + | chr7_4:58297637-58297656 | Msa1166230:CDS | 40.0% | |
| TCATCATCATCTTCCACATG+AGG | + | chr7_4:58297676-58297695 | Msa1166230:CDS | 40.0% | |
| AATAGATCCTACTGCTGAAG+TGG | + | chr7_4:58295987-58296006 | Msa1166230:CDS | 40.0% | |
| TGTGTGTGAGATATGCAACA+AGG | + | chr7_4:58296050-58296069 | Msa1166230:CDS | 40.0% | |
| GTGTGTGAGATATGCAACAA+GGG | + | chr7_4:58296051-58296070 | Msa1166230:CDS | 40.0% | |
| TATGCAACAAGGGATTTCAG+AGG | + | chr7_4:58296061-58296080 | Msa1166230:CDS | 40.0% | |
| ATGCAACAAGGGATTTCAGA+GGG | + | chr7_4:58296062-58296081 | Msa1166230:CDS | 40.0% | |
| ! | TTCGGTGTAACTGAAGATTC+TGG | - | chr7_4:58296089-58296108 | None:intergenic | 40.0% |
| AATCTTCAGTTACACCGAAG+AGG | + | chr7_4:58296090-58296109 | Msa1166230:CDS | 40.0% | |
| ATGGAAGATTGTGACCTCTT+CGG | - | chr7_4:58296107-58296126 | None:intergenic | 40.0% | |
| GTTCTTTGCCTAAGTTTCCA+TGG | - | chr7_4:58296126-58296145 | None:intergenic | 40.0% | |
| ATTTCTTCTCGCCATGTTTG+CGG | - | chr7_4:58296257-58296276 | None:intergenic | 40.0% | |
| GATACGCTGTTCAATCAGAT+TGG | + | chr7_4:58296301-58296320 | Msa1166230:CDS | 40.0% | |
| ACCAGAAAACATGTGGTACT+AGG | + | chr7_4:58296331-58296350 | Msa1166230:CDS | 40.0% | |
| CCAGAAAACATGTGGTACTA+GGG | + | chr7_4:58296332-58296351 | Msa1166230:CDS | 40.0% | |
| CAAATCGCCGTGTGAAAATA+AGG | - | chr7_4:58296420-58296439 | None:intergenic | 40.0% | |
| GTAAACCAAGGATTAACCAG+TGG | + | chr7_4:58296816-58296835 | Msa1166230:CDS | 40.0% | |
| !! | ATTTGGCTTTGCAAGTTTGG+TGG | - | chr7_4:58296846-58296865 | None:intergenic | 40.0% |
| !! | TGCATTTGGCTTTGCAAGTT+TGG | - | chr7_4:58296849-58296868 | None:intergenic | 40.0% |
| !! | GTGTTGGAAACAGGTTTTAG+CGG | - | chr7_4:58296891-58296910 | None:intergenic | 40.0% |
| ! | GGGGATCTTAGTGAGTTTTT+AGG | - | chr7_4:58296942-58296961 | None:intergenic | 40.0% |
| TTGGAGCATGTTCTTGAGTT+GGG | - | chr7_4:58296962-58296981 | None:intergenic | 40.0% | |
| AGATCAACCAACAATGCATG+TGG | + | chr7_4:58296990-58297009 | Msa1166230:CDS | 40.0% | |
| ! | AAGATGGAGGCAAGGTTTTT+GGG | - | chr7_4:58297055-58297074 | None:intergenic | 40.0% |
| AGTTGAAGGGTTGAAGAAGA+TGG | - | chr7_4:58297071-58297090 | None:intergenic | 40.0% | |
| !!! | GTTCATAAGAGGGTTGGTTT+TGG | - | chr7_4:58297313-58297332 | None:intergenic | 40.0% |
| GATGAAGAATGTTGCACAAG+AGG | + | chr7_4:58297502-58297521 | Msa1166230:CDS | 40.0% | |
| GCAACAGTCCATGATTTCTT+GGG | + | chr7_4:58297563-58297582 | Msa1166230:CDS | 40.0% | |
| GTCCATGATTTCTTGGGAAT+TGG | + | chr7_4:58297569-58297588 | Msa1166230:CDS | 40.0% | |
| CTCCAATTCCCAAGAAATCA+TGG | - | chr7_4:58297574-58297593 | None:intergenic | 40.0% | |
| CATGATTTCTTGGGAATTGG+AGG | + | chr7_4:58297572-58297591 | Msa1166230:CDS | 40.0% | |
| TGAACCACAGCAACAAAGAT+TGG | + | chr7_4:58297613-58297632 | Msa1166230:CDS | 40.0% | |
| !! | TGGAAGCATTAAGTCAACAG+AGG | + | chr7_4:58297633-58297652 | Msa1166230:CDS | 40.0% |
| AGCATTAAGTCAACAGAGGT+TGG | + | chr7_4:58297637-58297656 | Msa1166230:CDS | 40.0% | |
| TCATCATCATCTTCCACATG+AGG | + | chr7_4:58297676-58297695 | Msa1166230:CDS | 40.0% | |
| AATGCAACCACTTCAGCAGT+AGG | - | chr7_4:58295997-58296016 | None:intergenic | 45.0% | |
| GAAGAGGTCACAATCTTCCA+TGG | + | chr7_4:58296106-58296125 | Msa1166230:CDS | 45.0% | |
| GGATTGTGGTGAACACATGA+TGG | - | chr7_4:58296189-58296208 | None:intergenic | 45.0% | |
| GCAAACATGGCGAGAAGAAA+TGG | + | chr7_4:58296256-58296275 | Msa1166230:CDS | 45.0% | |
| CGCTGTTCAATCAGATTGGA+AGG | + | chr7_4:58296305-58296324 | Msa1166230:CDS | 45.0% | |
| AAGGCTCACCAGAAAACATG+TGG | + | chr7_4:58296324-58296343 | Msa1166230:CDS | 45.0% | |
| ! | CCCTAGTACCACATGTTTTC+TGG | - | chr7_4:58296335-58296354 | None:intergenic | 45.0% |
| ATCGCCGTGTGAAAATAAGG+CGG | - | chr7_4:58296417-58296436 | None:intergenic | 45.0% | |
| TGCATCACAGAATGCTCTGT+GGG | - | chr7_4:58296775-58296794 | None:intergenic | 45.0% | |
| ATGCATCACAGAATGCTCTG+TGG | - | chr7_4:58296776-58296795 | None:intergenic | 45.0% | |
| TTTAGCGGCATGGTAGAGAT+AGG | - | chr7_4:58296876-58296895 | None:intergenic | 45.0% | |
| !! | TCTGAGGAAGTGTTGGAAAC+AGG | - | chr7_4:58296900-58296919 | None:intergenic | 45.0% |
| ! | TGGAGCATGTTCTTGAGTTG+GGG | - | chr7_4:58296961-58296980 | None:intergenic | 45.0% |
| GTTGGAGCATGTTCTTGAGT+TGG | - | chr7_4:58296963-58296982 | None:intergenic | 45.0% | |
| TCAACCAACAATGCATGTGG+TGG | + | chr7_4:58296993-58297012 | Msa1166230:CDS | 45.0% | |
| ! | ACTAGTGCAGGTGCACTTTT+TGG | + | chr7_4:58297026-58297045 | Msa1166230:CDS | 45.0% |
| ! | GAAGATGGAGGCAAGGTTTT+TGG | - | chr7_4:58297056-58297075 | None:intergenic | 45.0% |
| TGAAGGGTTGAAGAAGATGG+AGG | - | chr7_4:58297068-58297087 | None:intergenic | 45.0% | |
| ! | GTGCTACTGCAAGCAATAGT+GGG | + | chr7_4:58297204-58297223 | Msa1166230:CDS | 45.0% |
| ! | TCTAACATGGCTGGTGTTAG+TGG | + | chr7_4:58297359-58297378 | Msa1166230:CDS | 45.0% |
| GGCAACAGTCCATGATTTCT+TGG | + | chr7_4:58297562-58297581 | Msa1166230:CDS | 45.0% | |
| GCTTCCAATCTTTGTTGCTG+TGG | - | chr7_4:58297620-58297639 | None:intergenic | 45.0% | |
| TCCACATGAGGATTCAGCAA+TGG | + | chr7_4:58297688-58297707 | Msa1166230:CDS | 45.0% | |
| TCCATTGCTGAATCCTCATG+TGG | - | chr7_4:58297692-58297711 | None:intergenic | 45.0% | |
| AATGCAACCACTTCAGCAGT+AGG | - | chr7_4:58295997-58296016 | None:intergenic | 45.0% | |
| GAAGAGGTCACAATCTTCCA+TGG | + | chr7_4:58296106-58296125 | Msa1166230:CDS | 45.0% | |
| GGATTGTGGTGAACACATGA+TGG | - | chr7_4:58296189-58296208 | None:intergenic | 45.0% | |
| GCAAACATGGCGAGAAGAAA+TGG | + | chr7_4:58296256-58296275 | Msa1166230:CDS | 45.0% | |
| CGCTGTTCAATCAGATTGGA+AGG | + | chr7_4:58296305-58296324 | Msa1166230:CDS | 45.0% | |
| AAGGCTCACCAGAAAACATG+TGG | + | chr7_4:58296324-58296343 | Msa1166230:CDS | 45.0% | |
| ! | CCCTAGTACCACATGTTTTC+TGG | - | chr7_4:58296335-58296354 | None:intergenic | 45.0% |
| ATCGCCGTGTGAAAATAAGG+CGG | - | chr7_4:58296417-58296436 | None:intergenic | 45.0% | |
| TGCATCACAGAATGCTCTGT+GGG | - | chr7_4:58296775-58296794 | None:intergenic | 45.0% | |
| ATGCATCACAGAATGCTCTG+TGG | - | chr7_4:58296776-58296795 | None:intergenic | 45.0% | |
| TTTAGCGGCATGGTAGAGAT+AGG | - | chr7_4:58296876-58296895 | None:intergenic | 45.0% | |
| !! | TCTGAGGAAGTGTTGGAAAC+AGG | - | chr7_4:58296900-58296919 | None:intergenic | 45.0% |
| ! | TGGAGCATGTTCTTGAGTTG+GGG | - | chr7_4:58296961-58296980 | None:intergenic | 45.0% |
| GTTGGAGCATGTTCTTGAGT+TGG | - | chr7_4:58296963-58296982 | None:intergenic | 45.0% | |
| TCAACCAACAATGCATGTGG+TGG | + | chr7_4:58296993-58297012 | Msa1166230:CDS | 45.0% | |
| ! | ACTAGTGCAGGTGCACTTTT+TGG | + | chr7_4:58297026-58297045 | Msa1166230:CDS | 45.0% |
| ! | GAAGATGGAGGCAAGGTTTT+TGG | - | chr7_4:58297056-58297075 | None:intergenic | 45.0% |
| TGAAGGGTTGAAGAAGATGG+AGG | - | chr7_4:58297068-58297087 | None:intergenic | 45.0% | |
| ! | GTGCTACTGCAAGCAATAGT+GGG | + | chr7_4:58297204-58297223 | Msa1166230:CDS | 45.0% |
| ! | TCTAACATGGCTGGTGTTAG+TGG | + | chr7_4:58297359-58297378 | Msa1166230:CDS | 45.0% |
| GGCAACAGTCCATGATTTCT+TGG | + | chr7_4:58297562-58297581 | Msa1166230:CDS | 45.0% | |
| GCTTCCAATCTTTGTTGCTG+TGG | - | chr7_4:58297620-58297639 | None:intergenic | 45.0% | |
| TCCACATGAGGATTCAGCAA+TGG | + | chr7_4:58297688-58297707 | Msa1166230:CDS | 45.0% | |
| TCCATTGCTGAATCCTCATG+TGG | - | chr7_4:58297692-58297711 | None:intergenic | 45.0% | |
| GGTGAACACATGATGGCTCA+GGG | - | chr7_4:58296182-58296201 | None:intergenic | 50.0% | |
| TGGTGAACACATGATGGCTC+AGG | - | chr7_4:58296183-58296202 | None:intergenic | 50.0% | |
| CTAATGCACGAGCTGGATTG+TGG | - | chr7_4:58296203-58296222 | None:intergenic | 50.0% | |
| CACAATCCAGCTCGTGCATT+AGG | + | chr7_4:58296201-58296220 | Msa1166230:CDS | 50.0% | |
| CGTGCATTAGGTGACCTTAC+TGG | + | chr7_4:58296213-58296232 | Msa1166230:CDS | 50.0% | |
| ! | GCATGCCACTGGTTAATCCT+TGG | - | chr7_4:58296824-58296843 | None:intergenic | 50.0% |
| !! | GGAAACAGGTTTTAGCGGCA+TGG | - | chr7_4:58296886-58296905 | None:intergenic | 50.0% |
| CATGCCACCACATGCATTGT+TGG | - | chr7_4:58297000-58297019 | None:intergenic | 50.0% | |
| GGCATGTTCTCAACTAGTGC+AGG | + | chr7_4:58297014-58297033 | Msa1166230:CDS | 50.0% | |
| !! | AGTGCAGGTGCACTTTTTGG+TGG | + | chr7_4:58297029-58297048 | Msa1166230:CDS | 50.0% |
| GGTTGAAGAAGATGGAGGCA+AGG | - | chr7_4:58297063-58297082 | None:intergenic | 50.0% | |
| TGGAGGACTAATTGCTGGCA+TGG | + | chr7_4:58297136-58297155 | Msa1166230:CDS | 50.0% | |
| TGCTGGCATGGCTCAAATGT+CGG | + | chr7_4:58297148-58297167 | Msa1166230:CDS | 50.0% | |
| !! | GGTGCTACTGCAAGCAATAG+TGG | + | chr7_4:58297203-58297222 | Msa1166230:CDS | 50.0% |
| ! | AACATGGCTGGTGTTAGTGG+TGG | + | chr7_4:58297362-58297381 | Msa1166230:CDS | 50.0% |
| GGTGAACACATGATGGCTCA+GGG | - | chr7_4:58296182-58296201 | None:intergenic | 50.0% | |
| TGGTGAACACATGATGGCTC+AGG | - | chr7_4:58296183-58296202 | None:intergenic | 50.0% | |
| CTAATGCACGAGCTGGATTG+TGG | - | chr7_4:58296203-58296222 | None:intergenic | 50.0% | |
| CACAATCCAGCTCGTGCATT+AGG | + | chr7_4:58296201-58296220 | Msa1166230:CDS | 50.0% | |
| CGTGCATTAGGTGACCTTAC+TGG | + | chr7_4:58296213-58296232 | Msa1166230:CDS | 50.0% | |
| ! | GCATGCCACTGGTTAATCCT+TGG | - | chr7_4:58296824-58296843 | None:intergenic | 50.0% |
| !! | GGAAACAGGTTTTAGCGGCA+TGG | - | chr7_4:58296886-58296905 | None:intergenic | 50.0% |
| CATGCCACCACATGCATTGT+TGG | - | chr7_4:58297000-58297019 | None:intergenic | 50.0% | |
| GGCATGTTCTCAACTAGTGC+AGG | + | chr7_4:58297014-58297033 | Msa1166230:CDS | 50.0% | |
| !! | AGTGCAGGTGCACTTTTTGG+TGG | + | chr7_4:58297029-58297048 | Msa1166230:CDS | 50.0% |
| GGTTGAAGAAGATGGAGGCA+AGG | - | chr7_4:58297063-58297082 | None:intergenic | 50.0% | |
| TGGAGGACTAATTGCTGGCA+TGG | + | chr7_4:58297136-58297155 | Msa1166230:CDS | 50.0% | |
| TGCTGGCATGGCTCAAATGT+CGG | + | chr7_4:58297148-58297167 | Msa1166230:CDS | 50.0% | |
| !! | GGTGCTACTGCAAGCAATAG+TGG | + | chr7_4:58297203-58297222 | Msa1166230:CDS | 50.0% |
| ! | AACATGGCTGGTGTTAGTGG+TGG | + | chr7_4:58297362-58297381 | Msa1166230:CDS | 50.0% |
| AGGTCACCTAATGCACGAGC+TGG | - | chr7_4:58296210-58296229 | None:intergenic | 55.0% | |
| ! | CAAGTTTGGTGGCATGCCAC+TGG | - | chr7_4:58296835-58296854 | None:intergenic | 55.0% |
| ! | ATGGCTGGTGTTAGTGGTGG+AGG | + | chr7_4:58297365-58297384 | Msa1166230:CDS | 55.0% |
| AGGTCACCTAATGCACGAGC+TGG | - | chr7_4:58296210-58296229 | None:intergenic | 55.0% | |
| ! | CAAGTTTGGTGGCATGCCAC+TGG | - | chr7_4:58296835-58296854 | None:intergenic | 55.0% |
| ! | ATGGCTGGTGTTAGTGGTGG+AGG | + | chr7_4:58297365-58297384 | Msa1166230:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 58295967 | 58297733 | 58295967 | ID=Msa1166230;Name=Msa1166230 |
| chr7_4 | mRNA | 58295967 | 58297733 | 58295967 | ID=Msa1166230-mRNA-1;Parent=Msa1166230;Name=Msa1166230-mRNA-1;_AED=0.20;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|466 |
| chr7_4 | exon | 58295967 | 58296388 | 58295967 | ID=Msa1166230-mRNA-1:exon:17860;Parent=Msa1166230-mRNA-1 |
| chr7_4 | exon | 58296755 | 58297733 | 58296755 | ID=Msa1166230-mRNA-1:exon:17861;Parent=Msa1166230-mRNA-1 |
| chr7_4 | CDS | 58295967 | 58296388 | 58295967 | ID=Msa1166230-mRNA-1:cds;Parent=Msa1166230-mRNA-1 |
| chr7_4 | CDS | 58296755 | 58297733 | 58296755 | ID=Msa1166230-mRNA-1:cds;Parent=Msa1166230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
