Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166850 | XP_013450273.1 | 97.921 | 481 | 9 | 1 | 1 | 480 | 1 | 481 | 0.0 | 976 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166850 | sp|Q9FG14|MYOB7_ARATH | 48.343 | 513 | 210 | 13 | 14 | 478 | 13 | 518 | 5.04e-146 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166850 | A0A072U4M5 | 97.921 | 481 | 9 | 1 | 1 | 480 | 1 | 481 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385500 | Msa1166850 | 0.801976 | 6.984342e-49 | -8.615850e-47 |
| Msa0527540 | Msa1166850 | 0.804588 | 2.010342e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166850 | MtrunA17_Chr7g0268041 | 97.921 | 481 | 9 | 1 | 1 | 480 | 1 | 481 | 0.0 | 976 |
| Msa1166850 | MtrunA17_Chr1g0176391 | 61.031 | 485 | 161 | 9 | 14 | 480 | 12 | 486 | 0.0 | 570 |
| Msa1166850 | MtrunA17_Chr2g0307041 | 50.000 | 104 | 52 | 0 | 67 | 170 | 16 | 119 | 1.77e-22 | 99.0 |
| Msa1166850 | MtrunA17_Chr4g0073651 | 42.857 | 119 | 65 | 1 | 66 | 184 | 5 | 120 | 1.59e-19 | 90.9 |
| Msa1166850 | MtrunA17_Chr1g0184441 | 45.545 | 101 | 54 | 1 | 64 | 163 | 526 | 626 | 2.02e-16 | 82.4 |
| Msa1166850 | MtrunA17_Chr8g0376151 | 43.269 | 104 | 59 | 0 | 70 | 173 | 600 | 703 | 2.89e-14 | 75.5 |
| Msa1166850 | MtrunA17_Chr5g0434681 | 44.737 | 76 | 42 | 0 | 70 | 145 | 620 | 695 | 1.12e-12 | 70.5 |
| Msa1166850 | MtrunA17_Chr3g0093241 | 33.908 | 174 | 93 | 6 | 70 | 243 | 334 | 485 | 2.17e-11 | 65.9 |
| Msa1166850 | MtrunA17_Chr4g0049631 | 32.692 | 104 | 70 | 0 | 66 | 169 | 299 | 402 | 5.89e-11 | 64.3 |
| Msa1166850 | MtrunA17_Chr4g0003901 | 41.237 | 97 | 57 | 0 | 70 | 166 | 289 | 385 | 9.70e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166850 | AT5G06560.1 | 48.343 | 513 | 210 | 13 | 14 | 478 | 13 | 518 | 5.12e-147 | 431 |
| Msa1166850 | AT3G11850.2 | 42.915 | 494 | 224 | 11 | 33 | 478 | 21 | 504 | 2.33e-119 | 359 |
| Msa1166850 | AT3G11850.1 | 42.915 | 494 | 224 | 11 | 33 | 478 | 21 | 504 | 2.33e-119 | 359 |
| Msa1166850 | AT3G54740.3 | 39.413 | 477 | 201 | 14 | 22 | 471 | 16 | 431 | 4.21e-89 | 279 |
| Msa1166850 | AT3G54740.6 | 39.413 | 477 | 201 | 14 | 22 | 471 | 16 | 431 | 4.21e-89 | 279 |
| Msa1166850 | AT3G54740.2 | 39.413 | 477 | 201 | 14 | 22 | 471 | 16 | 431 | 4.21e-89 | 279 |
| Msa1166850 | AT3G54740.5 | 39.413 | 477 | 201 | 14 | 22 | 471 | 16 | 431 | 4.21e-89 | 279 |
| Msa1166850 | AT3G54740.8 | 40.233 | 430 | 179 | 10 | 59 | 471 | 15 | 383 | 3.45e-88 | 275 |
| Msa1166850 | AT3G54740.1 | 40.233 | 430 | 179 | 10 | 59 | 471 | 15 | 383 | 3.45e-88 | 275 |
| Msa1166850 | AT3G54740.7 | 40.233 | 430 | 179 | 10 | 59 | 471 | 15 | 383 | 3.45e-88 | 275 |
| Msa1166850 | AT3G54740.4 | 40.233 | 430 | 179 | 10 | 59 | 471 | 15 | 383 | 3.45e-88 | 275 |
| Msa1166850 | AT5G16720.1 | 43.966 | 116 | 59 | 1 | 54 | 169 | 350 | 459 | 1.55e-20 | 95.5 |
| Msa1166850 | AT4G30830.1 | 44.444 | 108 | 60 | 0 | 64 | 171 | 12 | 119 | 1.48e-19 | 90.5 |
| Msa1166850 | AT4G30830.2 | 44.444 | 108 | 60 | 0 | 64 | 171 | 12 | 119 | 1.48e-19 | 90.5 |
| Msa1166850 | AT5G57830.1 | 44.697 | 132 | 65 | 1 | 45 | 176 | 2 | 125 | 6.11e-19 | 89.0 |
| Msa1166850 | AT2G24140.2 | 44.340 | 106 | 59 | 0 | 65 | 170 | 14 | 119 | 1.79e-17 | 84.0 |
| Msa1166850 | AT2G24140.3 | 44.340 | 106 | 59 | 0 | 65 | 170 | 14 | 119 | 1.79e-17 | 84.0 |
| Msa1166850 | AT1G70750.1 | 44.000 | 100 | 56 | 0 | 70 | 169 | 416 | 515 | 2.39e-15 | 79.3 |
| Msa1166850 | AT4G13630.2 | 42.308 | 130 | 71 | 3 | 40 | 167 | 195 | 322 | 7.95e-15 | 77.4 |
| Msa1166850 | AT4G13630.1 | 42.308 | 130 | 71 | 3 | 40 | 167 | 195 | 322 | 7.95e-15 | 77.4 |
| Msa1166850 | AT2G30690.1 | 41.584 | 101 | 58 | 1 | 64 | 163 | 609 | 709 | 2.99e-14 | 75.9 |
| Msa1166850 | AT2G30690.2 | 41.584 | 101 | 58 | 1 | 64 | 163 | 609 | 709 | 2.99e-14 | 75.9 |
| Msa1166850 | AT1G04890.1 | 49.474 | 95 | 48 | 0 | 70 | 164 | 114 | 208 | 1.67e-13 | 72.8 |
| Msa1166850 | AT1G08800.2 | 37.391 | 115 | 72 | 0 | 49 | 163 | 872 | 986 | 2.11e-13 | 73.6 |
| Msa1166850 | AT1G08800.4 | 37.391 | 115 | 72 | 0 | 49 | 163 | 872 | 986 | 2.11e-13 | 73.6 |
| Msa1166850 | AT1G08800.3 | 37.391 | 115 | 72 | 0 | 49 | 163 | 872 | 986 | 2.11e-13 | 73.6 |
| Msa1166850 | AT1G08800.1 | 37.391 | 115 | 72 | 0 | 49 | 163 | 872 | 986 | 2.11e-13 | 73.6 |
| Msa1166850 | AT4G13160.1 | 47.368 | 95 | 50 | 0 | 70 | 164 | 117 | 211 | 6.28e-13 | 69.7 |
| Msa1166850 | AT1G74830.1 | 42.056 | 107 | 58 | 2 | 70 | 175 | 305 | 408 | 6.85e-13 | 71.2 |
| Msa1166850 | AT2G24140.4 | 48.571 | 70 | 36 | 0 | 103 | 172 | 1 | 70 | 1.04e-11 | 65.9 |
| Msa1166850 | AT2G24140.1 | 48.571 | 70 | 36 | 0 | 103 | 172 | 1 | 70 | 1.04e-11 | 65.9 |
| Msa1166850 | AT1G18990.1 | 34.337 | 166 | 96 | 4 | 27 | 191 | 268 | 421 | 3.34e-11 | 65.9 |
Find 166 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGATCGTTTGAGGAATT+TGG | 0.149872 | 7_4:-59011314 | Msa1166850:CDS |
| ATTATCTACCTTCTTAAAAT+TGG | 0.151355 | 7_4:+59011057 | None:intergenic |
| TAGAGGAATTGTTGTATAAA+AGG | 0.183383 | 7_4:-59011558 | Msa1166850:CDS |
| AAACAGCGCTGCAACTTTCT+AGG | 0.214289 | 7_4:+59009306 | None:intergenic |
| CACCGAACGGATCCAATTCT+TGG | 0.235610 | 7_4:+59011888 | None:intergenic |
| AGGGAAGAATGATAGTAATT+TGG | 0.251764 | 7_4:+59012458 | None:intergenic |
| TATATTACATTACATGGATT+TGG | 0.256423 | 7_4:-59011992 | Msa1166850:exon |
| GGCGTTGTTCGCGTTGAAAT+TGG | 0.298444 | 7_4:-59011811 | Msa1166850:CDS |
| CCGAACGATGTTCCAAGAAT+TGG | 0.298688 | 7_4:-59011900 | Msa1166850:CDS |
| CAAAACAAGCTGTGCTTTAT+CGG | 0.300589 | 7_4:+59010817 | None:intergenic |
| GTAACAACTCCTAGGGAGTT+TGG | 0.317502 | 7_4:-59010947 | Msa1166850:CDS |
| GCGTTGTTCGCGTTGAAATT+GGG | 0.320768 | 7_4:-59011810 | Msa1166850:CDS |
| TCAAGATTTGTGTTCTGAAT+TGG | 0.320822 | 7_4:-59011737 | Msa1166850:CDS |
| TGTACAGATTTGTGTTCAAT+TGG | 0.324763 | 7_4:-59012143 | Msa1166850:intron |
| TCCTAGGGAGTTTGGAAATC+AGG | 0.328062 | 7_4:-59010939 | Msa1166850:CDS |
| AGGAAGAGGAATAATAATAA+TGG | 0.334301 | 7_4:-59011094 | Msa1166850:CDS |
| GGGGTGTATGTTTGGTTTGG+AGG | 0.337233 | 7_4:+59012438 | None:intergenic |
| TTCACTTACGTGTGAAGTTC+AGG | 0.346138 | 7_4:-59011521 | Msa1166850:CDS |
| TCATGTGACTCGTCGTCGTT+TGG | 0.362096 | 7_4:-59011160 | Msa1166850:CDS |
| TCGACAACCTTCCTTGTGTT+GGG | 0.362381 | 7_4:-59012518 | Msa1166850:five_prime_UTR |
| AGGAATAATAATAATGGGTC+AGG | 0.364109 | 7_4:-59011088 | Msa1166850:CDS |
| GATGTTGAGAAGTATGTGTT+TGG | 0.365629 | 7_4:-59011346 | Msa1166850:CDS |
| ACATTAACTCTCTTCTGTTC+TGG | 0.372528 | 7_4:+59010758 | None:intergenic |
| AATGTAATATTGTAATTTGT+TGG | 0.378479 | 7_4:-59009495 | Msa1166850:three_prime_UTR |
| GGGTTGCATCGATTGTTTCC+TGG | 0.382694 | 7_4:-59010543 | Msa1166850:CDS |
| TGTGACTGTAGGTATATGTT+TGG | 0.385749 | 7_4:-59009754 | Msa1166850:intron |
| GTACAGATTTGTGTTCAATT+GGG | 0.390151 | 7_4:-59012142 | Msa1166850:intron |
| ATATGTTTCAAGAATGCAAT+TGG | 0.391625 | 7_4:-59009665 | Msa1166850:CDS |
| TGTTATTATATTACATTACA+TGG | 0.396185 | 7_4:-59011998 | Msa1166850:exon |
| CATCCATCTGACTATAAGTT+GGG | 0.397922 | 7_4:+59011263 | None:intergenic |
| AGAGGAATTGTTGTATAAAA+GGG | 0.403693 | 7_4:-59011557 | Msa1166850:CDS |
| ATGTAAAGCTTCTTTACATA+AGG | 0.410091 | 7_4:+59010902 | None:intergenic |
| AAGAAGGTGTTTGGCAAGGA+GGG | 0.413591 | 7_4:-59012113 | Msa1166850:five_prime_UTR |
| ATGTTGAGAAGTATGTGTTT+GGG | 0.413739 | 7_4:-59011345 | Msa1166850:CDS |
| TCCTCAACCACACTTCTTCA+AGG | 0.413926 | 7_4:-59012401 | Msa1166850:intron |
| GGGGAAGAAAAGAAGGTGTT+TGG | 0.414179 | 7_4:-59012122 | Msa1166850:five_prime_UTR |
| CCAATTCTTGGAACATCGTT+CGG | 0.418893 | 7_4:+59011900 | None:intergenic |
| ATTGGATCCGTTCGGTGAAA+CGG | 0.419867 | 7_4:-59011882 | Msa1166850:CDS |
| TGTGAAACATGGTTATGATT+TGG | 0.419900 | 7_4:-59009466 | Msa1166850:three_prime_UTR |
| GGAAGAGGAATAATAATAAT+GGG | 0.420804 | 7_4:-59011093 | Msa1166850:CDS |
| CAAGGCTCAATGGTAGCTTT+AGG | 0.421216 | 7_4:-59011114 | Msa1166850:CDS |
| CTCGAATGTTTATTCGTACT+AGG | 0.424909 | 7_4:+59011190 | None:intergenic |
| CAGTGCGATGAAGTTTCATT+TGG | 0.426986 | 7_4:+59009605 | None:intergenic |
| AGCATTCTCTCTCGTATGCT+TGG | 0.432651 | 7_4:-59009437 | Msa1166850:three_prime_UTR |
| ATGAATATGTAACAACTCCT+AGG | 0.433427 | 7_4:-59010955 | Msa1166850:CDS |
| GGTTGAGGAAACGGAGAAGA+AGG | 0.435030 | 7_4:+59012415 | None:intergenic |
| TTCAAGCACTTGAGGCGGAC+AGG | 0.436618 | 7_4:-59010874 | Msa1166850:CDS |
| GTGACTGTAGGTATATGTTT+GGG | 0.440852 | 7_4:-59009753 | Msa1166850:intron |
| ATCGACAACCTTCCTTGTGT+TGG | 0.442403 | 7_4:-59012519 | Msa1166850:five_prime_UTR |
| GAAACGGAAACACCATGAAA+TGG | 0.444844 | 7_4:-59011866 | Msa1166850:CDS |
| TTGATGACCTCTCTTTCTCC+AGG | 0.447921 | 7_4:+59010525 | None:intergenic |
| AAGAAGTGTGGTTGAGGAAA+CGG | 0.449525 | 7_4:+59012406 | None:intergenic |
| GTTATAGAGAAGGTGATAGT+TGG | 0.451471 | 7_4:-59011220 | Msa1166850:CDS |
| AAGCATAGAATGCTGAGTTA+TGG | 0.453031 | 7_4:-59011493 | Msa1166850:CDS |
| GGGTGTATGTTTGGTTTGGA+GGG | 0.454478 | 7_4:+59012439 | None:intergenic |
| CCATCCATCTGACTATAAGT+TGG | 0.462484 | 7_4:+59011262 | None:intergenic |
| TTGAGTCAATGGATTGTGTT+GGG | 0.476111 | 7_4:-59009282 | Msa1166850:three_prime_UTR |
| GGAGAATAGAATATCTCAAA+TGG | 0.476799 | 7_4:-59011293 | Msa1166850:CDS |
| TTGACTGAGTCAGAGGTAGA+AGG | 0.478966 | 7_4:-59011469 | Msa1166850:CDS |
| CGTTGTTCGCGTTGAAATTG+GGG | 0.481816 | 7_4:-59011809 | Msa1166850:CDS |
| AAATTGAACGGTGGTGGTGA+TGG | 0.481967 | 7_4:-59011832 | Msa1166850:CDS |
| AGTAAGCCAGTGTTGCTAGA+TGG | 0.483817 | 7_4:+59009727 | None:intergenic |
| AAATTCCTCAAACGATCCCT+TGG | 0.484142 | 7_4:+59011316 | None:intergenic |
| GTTGAGGAAACGGAGAAGAA+GGG | 0.486510 | 7_4:+59012416 | None:intergenic |
| GGTGTTTCCGTTTCACCGAA+CGG | 0.491247 | 7_4:+59011875 | None:intergenic |
| CTAGTACGAATAAACATTCG+AGG | 0.497895 | 7_4:-59011189 | Msa1166850:CDS |
| TTCCAAGAATTGGATCCGTT+CGG | 0.499595 | 7_4:-59011890 | Msa1166850:CDS |
| AAAGAAGGTGTTTGGCAAGG+AGG | 0.504581 | 7_4:-59012114 | Msa1166850:five_prime_UTR |
| TGCATTACATTACATTTCAA+AGG | 0.506111 | 7_4:+59011412 | None:intergenic |
| ACCTTGAAGAAGTGTGGTTG+AGG | 0.508449 | 7_4:+59012400 | None:intergenic |
| CAACTTATAGTCAGATGGAT+GGG | 0.510170 | 7_4:-59011261 | Msa1166850:CDS |
| TCTGAATTCAAAAGCGGACC+TGG | 0.510414 | 7_4:-59010986 | Msa1166850:CDS |
| TACATGAGAGGACTGTCTAA+TGG | 0.512123 | 7_4:+59009391 | None:intergenic |
| TTTGTGTTCTGAATTGGAAG+AGG | 0.512404 | 7_4:-59011731 | Msa1166850:CDS |
| GTTAATGTGAGATCCTTTGT+TGG | 0.516782 | 7_4:-59010743 | Msa1166850:CDS |
| TATGTTTCAAGAATGCAATT+GGG | 0.520875 | 7_4:-59009664 | Msa1166850:CDS |
| GTAGATAATTTGTCCGAGGC+TGG | 0.522155 | 7_4:-59011043 | Msa1166850:CDS |
| TTCAATTGGGGAAGAAAAGA+AGG | 0.522212 | 7_4:-59012129 | Msa1166850:five_prime_UTR |
| CTAAAGCTACCATTGAGCCT+TGG | 0.523326 | 7_4:+59011115 | None:intergenic |
| AAACTCCAAGGGATCGTTTG+AGG | 0.524729 | 7_4:-59011321 | Msa1166850:CDS |
| AGATGGATGGGGATTTCAAT+GGG | 0.525949 | 7_4:-59011249 | Msa1166850:CDS |
| CAGATGGATGGGGATTTCAA+TGG | 0.526604 | 7_4:-59011250 | Msa1166850:CDS |
| GAAACACCATGAAATGGAAA+AGG | 0.526709 | 7_4:-59011860 | Msa1166850:CDS |
| TGAGAAGGCTGAGCTTGAGA+TGG | 0.528315 | 7_4:-59011647 | Msa1166850:CDS |
| AATGTGAGATCCTTTGTTGG+CGG | 0.533294 | 7_4:-59010740 | Msa1166850:CDS |
| GTGGGGAAATTGAACGGTGG+TGG | 0.533876 | 7_4:-59011838 | Msa1166850:CDS |
| TTCAAAGGAGGATACTCATA+AGG | 0.534931 | 7_4:+59011427 | None:intergenic |
| GGAATAATAATAATGGGTCA+GGG | 0.535516 | 7_4:-59011087 | Msa1166850:CDS |
| TTGACAAAGGACATCATGTA+AGG | 0.537139 | 7_4:-59009696 | Msa1166850:CDS |
| GTTGAGTCAATGGATTGTGT+TGG | 0.540900 | 7_4:-59009283 | Msa1166850:three_prime_UTR |
| CAATTGGGAGATTAGATCAC+AGG | 0.542512 | 7_4:-59009649 | Msa1166850:exon |
| CGCGACTGCAATTGCGAATG+TGG | 0.542602 | 7_4:-59011928 | Msa1166850:CDS |
| GAATGTGAAGCCGCCAACAA+AGG | 0.544205 | 7_4:+59010730 | None:intergenic |
| GGAGAATCCGACACAAACTC+AGG | 0.544748 | 7_4:+59011136 | None:intergenic |
| TCGGATTCTCCAAGGCTCAA+TGG | 0.544952 | 7_4:-59011124 | Msa1166850:CDS |
| AGCGCTGTTTGTTGAGTCAA+TGG | 0.545187 | 7_4:-59009293 | Msa1166850:three_prime_UTR |
| CATGAGGCTTCAAGCACTTG+AGG | 0.547249 | 7_4:-59010882 | Msa1166850:CDS |
| TGATAATTCAAAACACGTTG+TGG | 0.548600 | 7_4:-59012032 | Msa1166850:five_prime_UTR |
| CCTAGGGAGTTTGGAAATCA+GGG | 0.549475 | 7_4:-59010938 | Msa1166850:CDS |
| TCAATGGTAGCTTTAGGAAG+AGG | 0.551484 | 7_4:-59011108 | Msa1166850:CDS |
| TTGAGGAAACGGAGAAGAAG+GGG | 0.551587 | 7_4:+59012417 | None:intergenic |
| CGTCATATTATCACCAGCCT+CGG | 0.554657 | 7_4:+59011030 | None:intergenic |
| TACAGATTTGTGTTCAATTG+GGG | 0.555010 | 7_4:-59012141 | Msa1166850:intron |
| GGACAGGGAATCAATGAGGC+AGG | 0.555216 | 7_4:-59010858 | Msa1166850:CDS |
| TGAGGAAACGGAGAAGAAGG+GGG | 0.555386 | 7_4:+59012418 | None:intergenic |
| AACCCCAACTTATAGTCAGA+TGG | 0.560746 | 7_4:-59011266 | Msa1166850:CDS |
| ATGTGTTTGGGGAAACTCCA+AGG | 0.561976 | 7_4:-59011333 | Msa1166850:CDS |
| TCAAGCACTTGAGGCGGACA+GGG | 0.562181 | 7_4:-59010873 | Msa1166850:CDS |
| GAGGACGTGTCATGACCAGC+AGG | 0.563649 | 7_4:-59011593 | Msa1166850:CDS |
| AAGGACATCATGTAAGGTCG+TGG | 0.564376 | 7_4:-59009690 | Msa1166850:CDS |
| ATGTGTGGCTTTACGTGAAG+CGG | 0.564878 | 7_4:-59011782 | Msa1166850:CDS |
| CACCATGAAATGGAAAAGGT+GGG | 0.566484 | 7_4:-59011856 | Msa1166850:CDS |
| AGTTTGTGTCGGATTCTCCA+AGG | 0.567679 | 7_4:-59011132 | Msa1166850:CDS |
| ACACCATGAAATGGAAAAGG+TGG | 0.568062 | 7_4:-59011857 | Msa1166850:CDS |
| GTTTGGCCCTGAGTTTGTGT+CGG | 0.571530 | 7_4:-59011143 | Msa1166850:CDS |
| GTTCTGAATTGGAAGAGGAA+AGG | 0.572811 | 7_4:-59011726 | Msa1166850:CDS |
| TCACAGGCTAGGATCATATG+TGG | 0.574093 | 7_4:-59009633 | Msa1166850:three_prime_UTR |
| TGGGAAGAATGTTATAGAGA+AGG | 0.574569 | 7_4:-59011230 | Msa1166850:CDS |
| CGACAACCTTCCTTGTGTTG+GGG | 0.576907 | 7_4:-59012517 | Msa1166850:five_prime_UTR |
| TCTCTGTCTGCCCCAACACA+AGG | 0.579962 | 7_4:+59012507 | None:intergenic |
| ATAAAGAAATAAATCTTCAA+CGG | 0.581260 | 7_4:+59012067 | None:intergenic |
| CTAAAGCTAAAAGCTCCTGC+TGG | 0.583273 | 7_4:+59011578 | None:intergenic |
| TTACATGATGTCCTTTGTCA+AGG | 0.584012 | 7_4:+59009698 | None:intergenic |
| CCAACTTATAGTCAGATGGA+TGG | 0.584768 | 7_4:-59011262 | Msa1166850:CDS |
| GGGCTACCATCTAGCAACAC+TGG | 0.588233 | 7_4:-59009733 | Msa1166850:CDS |
| CCCTGATTTCCAAACTCCCT+AGG | 0.591505 | 7_4:+59010938 | None:intergenic |
| AGAAAAGAAGGTGTTTGGCA+AGG | 0.592522 | 7_4:-59012117 | Msa1166850:five_prime_UTR |
| GAAAAGGTGGGGAAATTGAA+CGG | 0.592525 | 7_4:-59011844 | Msa1166850:CDS |
| ATTACATTACATTTCAAAGG+AGG | 0.595172 | 7_4:+59011415 | None:intergenic |
| GAGGAAACGGAGAAGAAGGG+GGG | 0.597961 | 7_4:+59012419 | None:intergenic |
| ATCCATCTGACTATAAGTTG+GGG | 0.600695 | 7_4:+59011264 | None:intergenic |
| AAAGGAGGATACTCATAAGG+TGG | 0.605904 | 7_4:+59011430 | None:intergenic |
| TGAATATGTAACAACTCCTA+GGG | 0.605927 | 7_4:-59010954 | Msa1166850:CDS |
| TGTCTGCCCCAACACAAGGA+AGG | 0.606098 | 7_4:+59012511 | None:intergenic |
| AACTTATAGTCAGATGGATG+GGG | 0.607336 | 7_4:-59011260 | Msa1166850:CDS |
| GAATAATAATAATGGGTCAG+GGG | 0.608186 | 7_4:-59011086 | Msa1166850:CDS |
| AAGGAACGCTGCTTCGTCCG+CGG | 0.613406 | 7_4:-59011707 | Msa1166850:CDS |
| ACCATGAAATGGAAAAGGTG+GGG | 0.614402 | 7_4:-59011855 | Msa1166850:CDS |
| AGAAATACCTTGAAGAAGTG+TGG | 0.614816 | 7_4:+59012394 | None:intergenic |
| ATTGACTCTGAATTCAAAAG+CGG | 0.615809 | 7_4:-59010992 | Msa1166850:CDS |
| TGTTCGCGTTGAAATTGGGG+AGG | 0.616199 | 7_4:-59011806 | Msa1166850:CDS |
| ATTGTTTCCTGGAGAAAGAG+AGG | 0.622679 | 7_4:-59010532 | Msa1166850:CDS |
| GGGAGATTAGATCACAGGCT+AGG | 0.623451 | 7_4:-59009644 | Msa1166850:exon |
| TTATGGCTTGACTGAGTCAG+AGG | 0.625650 | 7_4:-59011476 | Msa1166850:CDS |
| TTACTAATGCTCCTTGACAA+AGG | 0.626578 | 7_4:-59009709 | Msa1166850:CDS |
| TGAAATTGGGGAGGAATGTG+TGG | 0.627744 | 7_4:-59011797 | Msa1166850:CDS |
| ATGTAAAGAAGCTTTACATG+AGG | 0.629070 | 7_4:-59010898 | Msa1166850:CDS |
| ATTGAGATTGCAGACTGAGA+AGG | 0.630429 | 7_4:-59011662 | Msa1166850:CDS |
| CGAGGCTGGTGATAATATGA+CGG | 0.632376 | 7_4:-59011029 | Msa1166850:CDS |
| TGTTGAGAAGTATGTGTTTG+GGG | 0.637549 | 7_4:-59011344 | Msa1166850:CDS |
| GAAGGTAGATAATTTGTCCG+AGG | 0.640933 | 7_4:-59011047 | Msa1166850:CDS |
| TGTGTTTGGGGAAACTCCAA+GGG | 0.642552 | 7_4:-59011332 | Msa1166850:CDS |
| ACATATTCATCAAAAGCACC+AGG | 0.644085 | 7_4:+59010968 | None:intergenic |
| CAGCATGGCATGTACATGAG+AGG | 0.649118 | 7_4:+59009379 | None:intergenic |
| AAGGTGTTTGGCAAGGAGGG+AGG | 0.651679 | 7_4:-59012110 | Msa1166850:five_prime_UTR |
| GAGAATCCGACACAAACTCA+GGG | 0.656277 | 7_4:+59011137 | None:intergenic |
| CACAGGCTAGGATCATATGT+GGG | 0.656979 | 7_4:-59009632 | Msa1166850:three_prime_UTR |
| TAATGTAATGCATGTTTCTG+CGG | 0.660930 | 7_4:-59011401 | Msa1166850:CDS |
| GTTGGTTGATCTGTGAAACA+TGG | 0.665552 | 7_4:-59009477 | Msa1166850:three_prime_UTR |
| GTATAATGTACGAAGAAGTG+AGG | 0.670881 | 7_4:+59009349 | None:intergenic |
| AAGTGAGGACACTTACAGCA+TGG | 0.674154 | 7_4:+59009364 | None:intergenic |
| AGGCGGACAGGGAATCAATG+AGG | 0.683449 | 7_4:-59010862 | Msa1166850:CDS |
| ACTGAGTCAGAGGTAGAAGG+TGG | 0.685416 | 7_4:-59011466 | Msa1166850:CDS |
| GAGGCTTCAAGCACTTGAGG+CGG | 0.691923 | 7_4:-59010879 | Msa1166850:CDS |
| TGACATTGTTTCATTCGCCG+CGG | 0.698217 | 7_4:+59011690 | None:intergenic |
| AAGGTGGGGAAATTGAACGG+TGG | 0.706112 | 7_4:-59011841 | Msa1166850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATACACAAAAATCT+AGG | - | chr7_4:59009347-59009366 | Msa1166850:three_prime_UTR | 15.0% |
| !! | AAAATATACACAAAAATCTA+GGG | - | chr7_4:59009348-59009367 | Msa1166850:three_prime_UTR | 15.0% |
| !! | AGGTAAATAATAATATTAAG+AGG | + | chr7_4:59009487-59009506 | None:intergenic | 15.0% |
| !! | AGGATAAAAAAAAAAAACAT+AGG | + | chr7_4:59009521-59009540 | None:intergenic | 15.0% |
| !!! | CTTATGTAGTTTTATAATTA+AGG | + | chr7_4:59009541-59009560 | None:intergenic | 15.0% |
| !! | CTTAATTATAAAACTACATA+AGG | - | chr7_4:59009539-59009558 | Msa1166850:three_prime_UTR | 15.0% |
| !! | AATATAACTACAATGAAAAA+TGG | + | chr7_4:59009603-59009622 | None:intergenic | 15.0% |
| !! | ATAAAGAAATAAATCTTCAA+CGG | + | chr7_4:59009768-59009787 | None:intergenic | 15.0% |
| !! | TGTTATTATATTACATTACA+TGG | - | chr7_4:59009834-59009853 | Msa1166850:intron | 15.0% |
| !! | TTTAACATGTATAATATCAT+AGG | + | chr7_4:59011578-59011597 | None:intergenic | 15.0% |
| !!! | ACTAATTTTTTAAGAGATTA+TGG | + | chr7_4:59011636-59011655 | None:intergenic | 15.0% |
| !!! | TAATGGATAATTAATTTCAA+GGG | - | chr7_4:59011679-59011698 | Msa1166850:CDS | 15.0% |
| !!! | AATGTAATATTGTAATTTGT+TGG | - | chr7_4:59012337-59012356 | Msa1166850:intron | 15.0% |
| !! | TATATTACATTACATGGATT+TGG | - | chr7_4:59009840-59009859 | Msa1166850:intron | 20.0% |
| !! | ATTATCTACCTTCTTAAAAT+TGG | + | chr7_4:59010778-59010797 | None:intergenic | 20.0% |
| !!! | AAACTATTGTTTTCTTTCAA+TGG | + | chr7_4:59011465-59011484 | None:intergenic | 20.0% |
| !! | GAAATTAATTATCCATTACT+TGG | + | chr7_4:59011677-59011696 | None:intergenic | 20.0% |
| !!! | GTAATGGATAATTAATTTCA+AGG | - | chr7_4:59011678-59011697 | Msa1166850:CDS | 20.0% |
| !! | AATGGATAATTAATTTCAAG+GGG | - | chr7_4:59011680-59011699 | Msa1166850:CDS | 20.0% |
| !!! | AAATCTGTTATTGATTTTAG+TGG | - | chr7_4:59011707-59011726 | Msa1166850:CDS | 20.0% |
| ! | TAAGAGGAGAATGAATAAAA+GGG | + | chr7_4:59009471-59009490 | None:intergenic | 25.0% |
| ! | TTAAGAGGAGAATGAATAAA+AGG | + | chr7_4:59009472-59009491 | None:intergenic | 25.0% |
| !! | AAACATAGGAATTTTTACAG+AGG | + | chr7_4:59009507-59009526 | None:intergenic | 25.0% |
| ! | CAATGAAAAATGGAAATTGA+GGG | + | chr7_4:59009593-59009612 | None:intergenic | 25.0% |
| ! | ACAATGAAAAATGGAAATTG+AGG | + | chr7_4:59009594-59009613 | None:intergenic | 25.0% |
| !!! | ACAATTTAAACGTTTTGTTG+AGG | - | chr7_4:59010215-59010234 | Msa1166850:intron | 25.0% |
| ! | TAGAGGAATTGTTGTATAAA+AGG | - | chr7_4:59010274-59010293 | Msa1166850:intron | 25.0% |
| ! | AGAGGAATTGTTGTATAAAA+GGG | - | chr7_4:59010275-59010294 | Msa1166850:intron | 25.0% |
| ! | ATTACATTACATTTCAAAGG+AGG | + | chr7_4:59010420-59010439 | None:intergenic | 25.0% |
| ! | TGCATTACATTACATTTCAA+AGG | + | chr7_4:59010423-59010442 | None:intergenic | 25.0% |
| ! | AGGAAGAGGAATAATAATAA+TGG | - | chr7_4:59010738-59010757 | Msa1166850:CDS | 25.0% |
| ! | GGAAGAGGAATAATAATAAT+GGG | - | chr7_4:59010739-59010758 | Msa1166850:CDS | 25.0% |
| ! | ATGTAAAGCTTCTTTACATA+AGG | + | chr7_4:59010933-59010952 | None:intergenic | 25.0% |
| ! | TAAGGTAATTTAATTGCAGA+TGG | - | chr7_4:59011136-59011155 | Msa1166850:CDS | 25.0% |
| !! | TGAAACAGAATAAGTATTGT+TGG | + | chr7_4:59011250-59011269 | None:intergenic | 25.0% |
| !! | AGTCTTTGTTTCAAAATGTA+TGG | - | chr7_4:59011354-59011373 | Msa1166850:CDS | 25.0% |
| !! | TGTTTTCTTTCAATGGTTTA+TGG | + | chr7_4:59011458-59011477 | None:intergenic | 25.0% |
| ! | ATGATGCATTGAAATTTCAT+AGG | + | chr7_4:59011555-59011574 | None:intergenic | 25.0% |
| ! | ATGGATAATTAATTTCAAGG+GGG | - | chr7_4:59011681-59011700 | Msa1166850:CDS | 25.0% |
| !!! | TATTGATTTTAGTGGAGAAA+TGG | - | chr7_4:59011715-59011734 | Msa1166850:CDS | 25.0% |
| ! | ATCTAAGCATATCCTTATAT+TGG | - | chr7_4:59011821-59011840 | Msa1166850:CDS | 25.0% |
| ! | ATAGAAAATGTTTGTTTGAG+AGG | + | chr7_4:59011847-59011866 | None:intergenic | 25.0% |
| ! | ATATGTTTCAAGAATGCAAT+TGG | - | chr7_4:59012167-59012186 | Msa1166850:intron | 25.0% |
| ! | TATGTTTCAAGAATGCAATT+GGG | - | chr7_4:59012168-59012187 | Msa1166850:intron | 25.0% |
| AGGGAAGAATGATAGTAATT+TGG | + | chr7_4:59009377-59009396 | None:intergenic | 30.0% | |
| TGTACAGATTTGTGTTCAAT+TGG | - | chr7_4:59009689-59009708 | Msa1166850:CDS | 30.0% | |
| GTACAGATTTGTGTTCAATT+GGG | - | chr7_4:59009690-59009709 | Msa1166850:CDS | 30.0% | |
| TACAGATTTGTGTTCAATTG+GGG | - | chr7_4:59009691-59009710 | Msa1166850:CDS | 30.0% | |
| TGATAATTCAAAACACGTTG+TGG | - | chr7_4:59009800-59009819 | Msa1166850:intron | 30.0% | |
| ! | TCAAGATTTGTGTTCTGAAT+TGG | - | chr7_4:59010095-59010114 | Msa1166850:intron | 30.0% |
| ! | TAATGTAATGCATGTTTCTG+CGG | - | chr7_4:59010431-59010450 | Msa1166850:intron | 30.0% |
| ! | ATGTTGAGAAGTATGTGTTT+GGG | - | chr7_4:59010487-59010506 | Msa1166850:intron | 30.0% |
| GGAGAATAGAATATCTCAAA+TGG | - | chr7_4:59010539-59010558 | Msa1166850:CDS | 30.0% | |
| !! | AGGAATAATAATAATGGGTC+AGG | - | chr7_4:59010744-59010763 | Msa1166850:CDS | 30.0% |
| !! | GGAATAATAATAATGGGTCA+GGG | - | chr7_4:59010745-59010764 | Msa1166850:CDS | 30.0% |
| !! | GAATAATAATAATGGGTCAG+GGG | - | chr7_4:59010746-59010765 | Msa1166850:CDS | 30.0% |
| !! | GGATTTCTCCAATTTTAAGA+AGG | - | chr7_4:59010767-59010786 | Msa1166850:CDS | 30.0% |
| ! | ATTGACTCTGAATTCAAAAG+CGG | - | chr7_4:59010840-59010859 | Msa1166850:CDS | 30.0% |
| ATGAATATGTAACAACTCCT+AGG | - | chr7_4:59010877-59010896 | Msa1166850:CDS | 30.0% | |
| TGAATATGTAACAACTCCTA+GGG | - | chr7_4:59010878-59010897 | Msa1166850:CDS | 30.0% | |
| ATGTAAAGAAGCTTTACATG+AGG | - | chr7_4:59010934-59010953 | Msa1166850:CDS | 30.0% | |
| ! | CACATTCTTCACAGTTTTTA+AGG | - | chr7_4:59011118-59011137 | Msa1166850:CDS | 30.0% |
| ! | ATCTTTCTTTTGTGTACAGT+GGG | - | chr7_4:59011269-59011288 | Msa1166850:CDS | 30.0% |
| !! | TTTTACTGATAATGCATACC+AGG | - | chr7_4:59011499-59011518 | Msa1166850:CDS | 30.0% |
| CTTAAGAAATATAGATTGCC+TGG | + | chr7_4:59011520-59011539 | None:intergenic | 30.0% | |
| CAGGCAATCTATATTTCTTA+AGG | - | chr7_4:59011518-59011537 | Msa1166850:CDS | 30.0% | |
| ! | GAAATGGTGATTACTGATTA+AGG | - | chr7_4:59011731-59011750 | Msa1166850:CDS | 30.0% |
| TTGTATCTAGCAACTATGAT+AGG | - | chr7_4:59011886-59011905 | Msa1166850:CDS | 30.0% | |
| ! | TTTTCCTATAGTGAGTTTAG+AGG | - | chr7_4:59011970-59011989 | Msa1166850:CDS | 30.0% |
| TTTCCTATAGTGAGTTTAGA+GGG | - | chr7_4:59011971-59011990 | Msa1166850:CDS | 30.0% | |
| TCTTGAGAGAAAAATCTAAG+GGG | + | chr7_4:59012279-59012298 | None:intergenic | 30.0% | |
| CTCTTGAGAGAAAAATCTAA+GGG | + | chr7_4:59012280-59012299 | None:intergenic | 30.0% | |
| ACTCTTGAGAGAAAAATCTA+AGG | + | chr7_4:59012281-59012300 | None:intergenic | 30.0% | |
| TGTGAAACATGGTTATGATT+TGG | - | chr7_4:59012366-59012385 | Msa1166850:intron | 30.0% | |
| AGAAATACCTTGAAGAAGTG+TGG | + | chr7_4:59009441-59009460 | None:intergenic | 35.0% | |
| TTCAATTGGGGAAGAAAAGA+AGG | - | chr7_4:59009703-59009722 | Msa1166850:CDS | 35.0% | |
| GAAACACCATGAAATGGAAA+AGG | - | chr7_4:59009972-59009991 | Msa1166850:intron | 35.0% | |
| ! | TTTGTGTTCTGAATTGGAAG+AGG | - | chr7_4:59010101-59010120 | Msa1166850:intron | 35.0% |
| !! | TTAAACGTTTTGTTGAGGAG+AGG | - | chr7_4:59010220-59010239 | Msa1166850:intron | 35.0% |
| AAGCATAGAATGCTGAGTTA+TGG | - | chr7_4:59010339-59010358 | Msa1166850:intron | 35.0% | |
| TTCAAAGGAGGATACTCATA+AGG | + | chr7_4:59010408-59010427 | None:intergenic | 35.0% | |
| ! | GATGTTGAGAAGTATGTGTT+TGG | - | chr7_4:59010486-59010505 | Msa1166850:intron | 35.0% |
| ! | TGTTGAGAAGTATGTGTTTG+GGG | - | chr7_4:59010488-59010507 | Msa1166850:intron | 35.0% |
| ATCCATCTGACTATAAGTTG+GGG | + | chr7_4:59010571-59010590 | None:intergenic | 35.0% | |
| CATCCATCTGACTATAAGTT+GGG | + | chr7_4:59010572-59010591 | None:intergenic | 35.0% | |
| CAACTTATAGTCAGATGGAT+GGG | - | chr7_4:59010571-59010590 | Msa1166850:intron | 35.0% | |
| AACTTATAGTCAGATGGATG+GGG | - | chr7_4:59010572-59010591 | Msa1166850:intron | 35.0% | |
| TGGGAAGAATGTTATAGAGA+AGG | - | chr7_4:59010602-59010621 | Msa1166850:intron | 35.0% | |
| GTTATAGAGAAGGTGATAGT+TGG | - | chr7_4:59010612-59010631 | Msa1166850:intron | 35.0% | |
| CTCGAATGTTTATTCGTACT+AGG | + | chr7_4:59010645-59010664 | None:intergenic | 35.0% | |
| CTAGTACGAATAAACATTCG+AGG | - | chr7_4:59010643-59010662 | Msa1166850:intron | 35.0% | |
| !! | ACATATTCATCAAAAGCACC+AGG | + | chr7_4:59010867-59010886 | None:intergenic | 35.0% |
| CAAAACAAGCTGTGCTTTAT+CGG | + | chr7_4:59011018-59011037 | None:intergenic | 35.0% | |
| ACATTAACTCTCTTCTGTTC+TGG | + | chr7_4:59011077-59011096 | None:intergenic | 35.0% | |
| GTTAATGTGAGATCCTTTGT+TGG | - | chr7_4:59011089-59011108 | Msa1166850:CDS | 35.0% | |
| AATTTAATTGCAGATGGTGC+AGG | - | chr7_4:59011142-59011161 | Msa1166850:CDS | 35.0% | |
| ! | CATCTTTCTTTTGTGTACAG+TGG | - | chr7_4:59011268-59011287 | Msa1166850:CDS | 35.0% |
| CAAATCAAGTAAGTAGTCAG+TGG | - | chr7_4:59011327-59011346 | Msa1166850:CDS | 35.0% | |
| ACTACTTATCATACTAGGTG+AGG | + | chr7_4:59011381-59011400 | None:intergenic | 35.0% | |
| AGCTGACTACTTATCATACT+AGG | + | chr7_4:59011386-59011405 | None:intergenic | 35.0% | |
| GAATACTGACACAGTTTCTA+TGG | - | chr7_4:59011763-59011782 | Msa1166850:CDS | 35.0% | |
| ! | AGTTTCTATGGAATGCCTTT+TGG | - | chr7_4:59011775-59011794 | Msa1166850:CDS | 35.0% |
| TTGTTTGAGAGGCCAATATA+AGG | + | chr7_4:59011836-59011855 | None:intergenic | 35.0% | |
| AACATATACCTACAGTCACA+AGG | + | chr7_4:59012078-59012097 | None:intergenic | 35.0% | |
| TGTGACTGTAGGTATATGTT+TGG | - | chr7_4:59012078-59012097 | Msa1166850:five_prime_UTR | 35.0% | |
| GTGACTGTAGGTATATGTTT+GGG | - | chr7_4:59012079-59012098 | Msa1166850:five_prime_UTR | 35.0% | |
| TTACTAATGCTCCTTGACAA+AGG | - | chr7_4:59012123-59012142 | Msa1166850:five_prime_UTR | 35.0% | |
| TTACATGATGTCCTTTGTCA+AGG | + | chr7_4:59012137-59012156 | None:intergenic | 35.0% | |
| TTGACAAAGGACATCATGTA+AGG | - | chr7_4:59012136-59012155 | Msa1166850:five_prime_UTR | 35.0% | |
| CTTGAGAGAAAAATCTAAGG+GGG | + | chr7_4:59012278-59012297 | None:intergenic | 35.0% | |
| GTATAATGTACGAAGAAGTG+AGG | + | chr7_4:59012486-59012505 | None:intergenic | 35.0% | |
| !! | TTGAGTCAATGGATTGTGTT+GGG | - | chr7_4:59012550-59012569 | Msa1166850:five_prime_UTR | 35.0% |
| ! | AAGAAGTGTGGTTGAGGAAA+CGG | + | chr7_4:59009429-59009448 | None:intergenic | 40.0% |
| TGTGTGTGAAATGATGCTTC+TGG | + | chr7_4:59009570-59009589 | None:intergenic | 40.0% | |
| !! | AGAAAAGAAGGTGTTTGGCA+AGG | - | chr7_4:59009715-59009734 | Msa1166850:CDS | 40.0% |
| CCAATTCTTGGAACATCGTT+CGG | + | chr7_4:59009935-59009954 | None:intergenic | 40.0% | |
| TTCCAAGAATTGGATCCGTT+CGG | - | chr7_4:59009942-59009961 | Msa1166850:intron | 40.0% | |
| GAAACGGAAACACCATGAAA+TGG | - | chr7_4:59009966-59009985 | Msa1166850:intron | 40.0% | |
| ACACCATGAAATGGAAAAGG+TGG | - | chr7_4:59009975-59009994 | Msa1166850:intron | 40.0% | |
| CACCATGAAATGGAAAAGGT+GGG | - | chr7_4:59009976-59009995 | Msa1166850:intron | 40.0% | |
| ACCATGAAATGGAAAAGGTG+GGG | - | chr7_4:59009977-59009996 | Msa1166850:intron | 40.0% | |
| GAAAAGGTGGGGAAATTGAA+CGG | - | chr7_4:59009988-59010007 | Msa1166850:intron | 40.0% | |
| ! | GTTCTGAATTGGAAGAGGAA+AGG | - | chr7_4:59010106-59010125 | Msa1166850:intron | 40.0% |
| ATTGAGATTGCAGACTGAGA+AGG | - | chr7_4:59010170-59010189 | Msa1166850:intron | 40.0% | |
| TTCACTTACGTGTGAAGTTC+AGG | - | chr7_4:59010311-59010330 | Msa1166850:intron | 40.0% | |
| AAAGGAGGATACTCATAAGG+TGG | + | chr7_4:59010405-59010424 | None:intergenic | 40.0% | |
| AAATTCCTCAAACGATCCCT+TGG | + | chr7_4:59010519-59010538 | None:intergenic | 40.0% | |
| AAGGGATCGTTTGAGGAATT+TGG | - | chr7_4:59010518-59010537 | Msa1166850:intron | 40.0% | |
| AACCCCAACTTATAGTCAGA+TGG | - | chr7_4:59010566-59010585 | Msa1166850:intron | 40.0% | |
| CCATCCATCTGACTATAAGT+TGG | + | chr7_4:59010573-59010592 | None:intergenic | 40.0% | |
| CCAACTTATAGTCAGATGGA+TGG | - | chr7_4:59010570-59010589 | Msa1166850:intron | 40.0% | |
| AGATGGATGGGGATTTCAAT+GGG | - | chr7_4:59010583-59010602 | Msa1166850:intron | 40.0% | |
| !! | TCAATGGTAGCTTTAGGAAG+AGG | - | chr7_4:59010724-59010743 | Msa1166850:CDS | 40.0% |
| ! | GAAGGTAGATAATTTGTCCG+AGG | - | chr7_4:59010785-59010804 | Msa1166850:CDS | 40.0% |
| AATGTGAGATCCTTTGTTGG+CGG | - | chr7_4:59011092-59011111 | Msa1166850:CDS | 40.0% | |
| AACCATCTCAATCGAACCTT+GGG | + | chr7_4:59011204-59011223 | None:intergenic | 40.0% | |
| ATTGTTTCCTGGAGAAAGAG+AGG | - | chr7_4:59011300-59011319 | Msa1166850:CDS | 40.0% | |
| TTTGCAGCAATGCCAAGTAA+TGG | - | chr7_4:59011662-59011681 | Msa1166850:CDS | 40.0% | |
| TACACGTTAGTCAGTCCAAA+AGG | + | chr7_4:59011793-59011812 | None:intergenic | 40.0% | |
| GTACCCTCTAAACTCACTAT+AGG | + | chr7_4:59011977-59011996 | None:intergenic | 40.0% | |
| !!! | GCTTGCTCTCTTTTTTTCAC+AGG | + | chr7_4:59012017-59012036 | None:intergenic | 40.0% |
| CAATTGGGAGATTAGATCAC+AGG | - | chr7_4:59012183-59012202 | Msa1166850:intron | 40.0% | |
| CAGTGCGATGAAGTTTCATT+TGG | + | chr7_4:59012230-59012249 | None:intergenic | 40.0% | |
| ! | CTCAAGAGTGATGTTTTGTG+CGG | - | chr7_4:59012292-59012311 | Msa1166850:intron | 40.0% |
| GTTGGTTGATCTGTGAAACA+TGG | - | chr7_4:59012355-59012374 | Msa1166850:intron | 40.0% | |
| TACATGAGAGGACTGTCTAA+TGG | + | chr7_4:59012444-59012463 | None:intergenic | 40.0% | |
| !! | GTTGAGTCAATGGATTGTGT+TGG | - | chr7_4:59012549-59012568 | Msa1166850:five_prime_UTR | 40.0% |
| ATCGACAACCTTCCTTGTGT+TGG | - | chr7_4:59009313-59009332 | Msa1166850:three_prime_UTR | 45.0% | |
| TCGACAACCTTCCTTGTGTT+GGG | - | chr7_4:59009314-59009333 | Msa1166850:three_prime_UTR | 45.0% | |
| !! | GGGTGTATGTTTGGTTTGGA+GGG | + | chr7_4:59009396-59009415 | None:intergenic | 45.0% |
| TTGAGGAAACGGAGAAGAAG+GGG | + | chr7_4:59009418-59009437 | None:intergenic | 45.0% | |
| GTTGAGGAAACGGAGAAGAA+GGG | + | chr7_4:59009419-59009438 | None:intergenic | 45.0% | |
| TCCTCAACCACACTTCTTCA+AGG | - | chr7_4:59009431-59009450 | Msa1166850:three_prime_UTR | 45.0% | |
| ! | ACCTTGAAGAAGTGTGGTTG+AGG | + | chr7_4:59009435-59009454 | None:intergenic | 45.0% |
| !! | GGGGAAGAAAAGAAGGTGTT+TGG | - | chr7_4:59009710-59009729 | Msa1166850:CDS | 45.0% |
| !! | AAAGAAGGTGTTTGGCAAGG+AGG | - | chr7_4:59009718-59009737 | Msa1166850:CDS | 45.0% |
| !! | AAGAAGGTGTTTGGCAAGGA+GGG | - | chr7_4:59009719-59009738 | Msa1166850:CDS | 45.0% |
| CCGAACGATGTTCCAAGAAT+TGG | - | chr7_4:59009932-59009951 | Msa1166850:intron | 45.0% | |
| ! | ATTGGATCCGTTCGGTGAAA+CGG | - | chr7_4:59009950-59009969 | Msa1166850:intron | 45.0% |
| ! | TCCCCACCTTTTCCATTTCA+TGG | + | chr7_4:59009981-59010000 | None:intergenic | 45.0% |
| ! | AAATTGAACGGTGGTGGTGA+TGG | - | chr7_4:59010000-59010019 | Msa1166850:intron | 45.0% |
| GCGTTGTTCGCGTTGAAATT+GGG | - | chr7_4:59010022-59010041 | Msa1166850:intron | 45.0% | |
| CGTTGTTCGCGTTGAAATTG+GGG | - | chr7_4:59010023-59010042 | Msa1166850:intron | 45.0% | |
| TGAAATTGGGGAGGAATGTG+TGG | - | chr7_4:59010035-59010054 | Msa1166850:intron | 45.0% | |
| ! | ATGTGTGGCTTTACGTGAAG+CGG | - | chr7_4:59010050-59010069 | Msa1166850:intron | 45.0% |
| TGACATTGTTTCATTCGCCG+CGG | + | chr7_4:59010145-59010164 | None:intergenic | 45.0% | |
| CTAAAGCTAAAAGCTCCTGC+TGG | + | chr7_4:59010257-59010276 | None:intergenic | 45.0% | |
| !!! | GCAGGAGCTTTTAGCTTTAG+AGG | - | chr7_4:59010257-59010276 | Msa1166850:intron | 45.0% |
| TTATGGCTTGACTGAGTCAG+AGG | - | chr7_4:59010356-59010375 | Msa1166850:intron | 45.0% | |
| TTGACTGAGTCAGAGGTAGA+AGG | - | chr7_4:59010363-59010382 | Msa1166850:intron | 45.0% | |
| ATGTGTTTGGGGAAACTCCA+AGG | - | chr7_4:59010499-59010518 | Msa1166850:intron | 45.0% | |
| TGTGTTTGGGGAAACTCCAA+GGG | - | chr7_4:59010500-59010519 | Msa1166850:intron | 45.0% | |
| AAACTCCAAGGGATCGTTTG+AGG | - | chr7_4:59010511-59010530 | Msa1166850:intron | 45.0% | |
| CAGATGGATGGGGATTTCAA+TGG | - | chr7_4:59010582-59010601 | Msa1166850:intron | 45.0% | |
| GAGAATCCGACACAAACTCA+GGG | + | chr7_4:59010698-59010717 | None:intergenic | 45.0% | |
| AGTTTGTGTCGGATTCTCCA+AGG | - | chr7_4:59010700-59010719 | Msa1166850:intron | 45.0% | |
| CTAAAGCTACCATTGAGCCT+TGG | + | chr7_4:59010720-59010739 | None:intergenic | 45.0% | |
| CAAGGCTCAATGGTAGCTTT+AGG | - | chr7_4:59010718-59010737 | Msa1166850:CDS | 45.0% | |
| ! | GTAGATAATTTGTCCGAGGC+TGG | - | chr7_4:59010789-59010808 | Msa1166850:CDS | 45.0% |
| CGTCATATTATCACCAGCCT+CGG | + | chr7_4:59010805-59010824 | None:intergenic | 45.0% | |
| CGAGGCTGGTGATAATATGA+CGG | - | chr7_4:59010803-59010822 | Msa1166850:CDS | 45.0% | |
| TCTGAATTCAAAAGCGGACC+TGG | - | chr7_4:59010846-59010865 | Msa1166850:CDS | 45.0% | |
| GTAACAACTCCTAGGGAGTT+TGG | - | chr7_4:59010885-59010904 | Msa1166850:CDS | 45.0% | |
| TCCTAGGGAGTTTGGAAATC+AGG | - | chr7_4:59010893-59010912 | Msa1166850:CDS | 45.0% | |
| CCTAGGGAGTTTGGAAATCA+GGG | - | chr7_4:59010894-59010913 | Msa1166850:CDS | 45.0% | |
| !!! | AGCACAGCTTGTTTTGCTCA+AGG | - | chr7_4:59011022-59011041 | Msa1166850:CDS | 45.0% |
| !! | TTTGCCCATTTTTCAGCCCA+AGG | - | chr7_4:59011185-59011204 | Msa1166850:CDS | 45.0% |
| CGAACCTTGGGCTGAAAAAT+GGG | + | chr7_4:59011192-59011211 | None:intergenic | 45.0% | |
| TCGAACCTTGGGCTGAAAAA+TGG | + | chr7_4:59011193-59011212 | None:intergenic | 45.0% | |
| CAACCATCTCAATCGAACCT+TGG | + | chr7_4:59011205-59011224 | None:intergenic | 45.0% | |
| ! | TTGATGACCTCTCTTTCTCC+AGG | + | chr7_4:59011310-59011329 | None:intergenic | 45.0% |
| GGACTGACTAACGTGTACAA+TGG | - | chr7_4:59011796-59011815 | Msa1166850:CDS | 45.0% | |
| TCTGAACTCCTTGTGACTGT+AGG | - | chr7_4:59012067-59012086 | Msa1166850:five_prime_UTR | 45.0% | |
| ! | AGTAAGCCAGTGTTGCTAGA+TGG | + | chr7_4:59012108-59012127 | None:intergenic | 45.0% |
| AAGGACATCATGTAAGGTCG+TGG | - | chr7_4:59012142-59012161 | Msa1166850:intron | 45.0% | |
| TCACAGGCTAGGATCATATG+TGG | - | chr7_4:59012199-59012218 | Msa1166850:intron | 45.0% | |
| CACAGGCTAGGATCATATGT+GGG | - | chr7_4:59012200-59012219 | Msa1166850:intron | 45.0% | |
| AGCATTCTCTCTCGTATGCT+TGG | - | chr7_4:59012395-59012414 | Msa1166850:intron | 45.0% | |
| AAGTGAGGACACTTACAGCA+TGG | + | chr7_4:59012471-59012490 | None:intergenic | 45.0% | |
| AAACAGCGCTGCAACTTTCT+AGG | + | chr7_4:59012529-59012548 | None:intergenic | 45.0% | |
| ! | AGCGCTGTTTGTTGAGTCAA+TGG | - | chr7_4:59012539-59012558 | Msa1166850:five_prime_UTR | 45.0% |
| CGACAACCTTCCTTGTGTTG+GGG | - | chr7_4:59009315-59009334 | Msa1166850:three_prime_UTR | 50.0% | |
| !! | GGGGTGTATGTTTGGTTTGG+AGG | + | chr7_4:59009397-59009416 | None:intergenic | 50.0% |
| ! | AGGGGGGTGTATGTTTGGTT+TGG | + | chr7_4:59009400-59009419 | None:intergenic | 50.0% |
| ! | GAAGAAGGGGGGTGTATGTT+TGG | + | chr7_4:59009405-59009424 | None:intergenic | 50.0% |
| TGAGGAAACGGAGAAGAAGG+GGG | + | chr7_4:59009417-59009436 | None:intergenic | 50.0% | |
| GGTTGAGGAAACGGAGAAGA+AGG | + | chr7_4:59009420-59009439 | None:intergenic | 50.0% | |
| CACCGAACGGATCCAATTCT+TGG | + | chr7_4:59009947-59009966 | None:intergenic | 50.0% | |
| GGTGTTTCCGTTTCACCGAA+CGG | + | chr7_4:59009960-59009979 | None:intergenic | 50.0% | |
| AAGGTGGGGAAATTGAACGG+TGG | - | chr7_4:59009991-59010010 | Msa1166850:intron | 50.0% | |
| GGCGTTGTTCGCGTTGAAAT+TGG | - | chr7_4:59010021-59010040 | Msa1166850:intron | 50.0% | |
| TGTTCGCGTTGAAATTGGGG+AGG | - | chr7_4:59010026-59010045 | Msa1166850:intron | 50.0% | |
| TGAGAAGGCTGAGCTTGAGA+TGG | - | chr7_4:59010185-59010204 | Msa1166850:intron | 50.0% | |
| ACTGAGTCAGAGGTAGAAGG+TGG | - | chr7_4:59010366-59010385 | Msa1166850:intron | 50.0% | |
| TCATGTGACTCGTCGTCGTT+TGG | - | chr7_4:59010672-59010691 | Msa1166850:intron | 50.0% | |
| GTTTGGCCCTGAGTTTGTGT+CGG | - | chr7_4:59010689-59010708 | Msa1166850:intron | 50.0% | |
| GGAGAATCCGACACAAACTC+AGG | + | chr7_4:59010699-59010718 | None:intergenic | 50.0% | |
| TCGGATTCTCCAAGGCTCAA+TGG | - | chr7_4:59010708-59010727 | Msa1166850:intron | 50.0% | |
| CCCTGATTTCCAAACTCCCT+AGG | + | chr7_4:59010897-59010916 | None:intergenic | 50.0% | |
| CATGAGGCTTCAAGCACTTG+AGG | - | chr7_4:59010950-59010969 | Msa1166850:CDS | 50.0% | |
| GAATGTGAAGCCGCCAACAA+AGG | + | chr7_4:59011105-59011124 | None:intergenic | 50.0% | |
| AGCCCAAGGTTCGATTGAGA+TGG | - | chr7_4:59011199-59011218 | Msa1166850:CDS | 50.0% | |
| !! | GGGTTGCATCGATTGTTTCC+TGG | - | chr7_4:59011289-59011308 | Msa1166850:CDS | 50.0% |
| GGGAGATTAGATCACAGGCT+AGG | - | chr7_4:59012188-59012207 | Msa1166850:intron | 50.0% | |
| CAGCATGGCATGTACATGAG+AGG | + | chr7_4:59012456-59012475 | None:intergenic | 50.0% | |
| TGTCTGCCCCAACACAAGGA+AGG | + | chr7_4:59009324-59009343 | None:intergenic | 55.0% | |
| TCTCTGTCTGCCCCAACACA+AGG | + | chr7_4:59009328-59009347 | None:intergenic | 55.0% | |
| GAGGAAACGGAGAAGAAGGG+GGG | + | chr7_4:59009416-59009435 | None:intergenic | 55.0% | |
| ! | AAGGTGTTTGGCAAGGAGGG+AGG | - | chr7_4:59009722-59009741 | Msa1166850:CDS | 55.0% |
| CGCGACTGCAATTGCGAATG+TGG | - | chr7_4:59009904-59009923 | Msa1166850:intron | 55.0% | |
| GTGGGGAAATTGAACGGTGG+TGG | - | chr7_4:59009994-59010013 | Msa1166850:intron | 55.0% | |
| GAGGCTTCAAGCACTTGAGG+CGG | - | chr7_4:59010953-59010972 | Msa1166850:CDS | 55.0% | |
| TTCAAGCACTTGAGGCGGAC+AGG | - | chr7_4:59010958-59010977 | Msa1166850:CDS | 55.0% | |
| TCAAGCACTTGAGGCGGACA+GGG | - | chr7_4:59010959-59010978 | Msa1166850:CDS | 55.0% | |
| AGGCGGACAGGGAATCAATG+AGG | - | chr7_4:59010970-59010989 | Msa1166850:CDS | 55.0% | |
| GGACAGGGAATCAATGAGGC+AGG | - | chr7_4:59010974-59010993 | Msa1166850:CDS | 55.0% | |
| GGGCTACCATCTAGCAACAC+TGG | - | chr7_4:59012099-59012118 | Msa1166850:five_prime_UTR | 55.0% | |
| AAGGAACGCTGCTTCGTCCG+CGG | - | chr7_4:59010125-59010144 | Msa1166850:intron | 60.0% | |
| GAGGACGTGTCATGACCAGC+AGG | - | chr7_4:59010239-59010258 | Msa1166850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 59009277 | 59012577 | 59009277 | ID=Msa1166850;Name=Msa1166850 |
| chr7_4 | mRNA | 59009277 | 59012577 | 59009277 | ID=Msa1166850-mRNA-1;Parent=Msa1166850;Name=Msa1166850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=333|1|1|1|0.66|0.5|4|380|480 |
| chr7_4 | exon | 59009277 | 59009765 | 59009277 | ID=Msa1166850-mRNA-1:exon:18258;Parent=Msa1166850-mRNA-1 |
| chr7_4 | exon | 59010520 | 59010566 | 59010520 | ID=Msa1166850-mRNA-1:exon:18257;Parent=Msa1166850-mRNA-1 |
| chr7_4 | exon | 59010715 | 59012158 | 59010715 | ID=Msa1166850-mRNA-1:exon:18256;Parent=Msa1166850-mRNA-1 |
| chr7_4 | exon | 59012402 | 59012577 | 59012402 | ID=Msa1166850-mRNA-1:exon:18255;Parent=Msa1166850-mRNA-1 |
| chr7_4 | five_prime_UTR | 59012402 | 59012577 | 59012402 | ID=Msa1166850-mRNA-1:five_prime_utr;Parent=Msa1166850-mRNA-1 |
| chr7_4 | five_prime_UTR | 59012002 | 59012158 | 59012002 | ID=Msa1166850-mRNA-1:five_prime_utr;Parent=Msa1166850-mRNA-1 |
| chr7_4 | CDS | 59010715 | 59012001 | 59010715 | ID=Msa1166850-mRNA-1:cds;Parent=Msa1166850-mRNA-1 |
| chr7_4 | CDS | 59010520 | 59010566 | 59010520 | ID=Msa1166850-mRNA-1:cds;Parent=Msa1166850-mRNA-1 |
| chr7_4 | CDS | 59009657 | 59009765 | 59009657 | ID=Msa1166850-mRNA-1:cds;Parent=Msa1166850-mRNA-1 |
| chr7_4 | three_prime_UTR | 59009277 | 59009656 | 59009277 | ID=Msa1166850-mRNA-1:three_prime_utr;Parent=Msa1166850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
