AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527540 MtrunA17_Chr4g0044551 100.000 251 0 0 1 251 805 1055 2.26e-174 511
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527540 AT4G34100.2 76.221 307 67 2 1 306 804 1105 2.06e-166 491
Msa0527540 AT4G34100.1 76.221 307 67 2 1 306 805 1106 3.35e-166 491
Msa0527540 AT4G32670.2 34.962 266 169 1 1 266 599 860 1.82e-44 162
Msa0527540 AT4G32670.1 34.962 266 169 1 1 266 599 860 1.82e-44 162

Find 108 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTTTCCTGTTAATTTA+TGG 0.137755 3_4:-82011165 Msa0527540:three_prime_UTR
CGATCTTGTTGATTTATATT+TGG 0.156811 3_4:+82011544 None:intergenic
TGCTACACCACTTCCAAATT+TGG 0.159186 3_4:+82013083 None:intergenic
TGGGCTTCTCTTTGAGCTTT+TGG 0.169577 3_4:-82012889 Msa0527540:CDS
TCTCCAGGCTGCAGGGTCTT+TGG 0.171181 3_4:-82011897 Msa0527540:CDS
CTCCAGGCTGCAGGGTCTTT+GGG 0.231290 3_4:-82011896 Msa0527540:CDS
GCCTTATATTTCTCAAGATA+TGG 0.247700 3_4:-82012797 Msa0527540:CDS
CACTTAATGCCATGAGTTAT+AGG 0.266226 3_4:+82013299 None:intergenic
CGCCAACTTTCATCCATTAG+AGG 0.297935 3_4:+82011952 None:intergenic
TTTGAGAGGGTGAGAGATGA+TGG 0.325844 3_4:-82011922 Msa0527540:CDS
TTCTTCTGCTGGTCATTGCT+TGG 0.327923 3_4:-82013406 Msa0527540:five_prime_UTR
GTGATCTGGACTGCTGTTGC+TGG 0.328384 3_4:-82013160 Msa0527540:CDS
GTCAATAGTTTCATTATGAT+TGG 0.330957 3_4:+82011853 None:intergenic
TAAATAATTTAGCTAATAGT+AGG 0.345872 3_4:-82011279 Msa0527540:three_prime_UTR
GTTATGTGTACCTTATGTTT+TGG 0.354946 3_4:-82011827 Msa0527540:CDS
GTGCCAAGAGATTTCATGTC+TGG 0.360708 3_4:-82011702 Msa0527540:CDS
TTGTCATCCCAGTGCTGATT+GGG 0.361144 3_4:-82012908 Msa0527540:CDS
TCCATATCTTGAGAAATATA+AGG 0.361508 3_4:+82012796 None:intergenic
AGTATCCTTCCCAGTGATAT+TGG 0.364976 3_4:+82013344 None:intergenic
TGCAGGGTCTTTGGGTCCTA+CGG 0.366377 3_4:-82011888 Msa0527540:CDS
CCAACGCACCATAAATTAAC+AGG 0.368603 3_4:+82011157 None:intergenic
CTTTATCAAGACTGGGCATT+GGG 0.374454 3_4:-82012819 Msa0527540:CDS
GATCTGTATGCCTTCATCAT+TGG 0.384697 3_4:-82013190 Msa0527540:CDS
TGATGGTTTCTCCAGGCTGC+AGG 0.385567 3_4:-82011905 Msa0527540:CDS
AGAGGTGTGTTTCCAGCACT+TGG 0.391758 3_4:-82011802 Msa0527540:CDS
TATTCCTCCTTTATCAAGAC+TGG 0.396982 3_4:-82012827 Msa0527540:CDS
TCATTGGAAGTTATGTGATC+TGG 0.403756 3_4:-82013174 Msa0527540:CDS
TCTTGATAAAGGAGGAATAC+TGG 0.405833 3_4:+82012831 None:intergenic
ACTTCGCATTGTTCTTCTGC+TGG 0.406936 3_4:-82013417 Msa0527540:five_prime_UTR
GTCTATCGATTTGCATGGTT+GGG 0.407664 3_4:-82011754 Msa0527540:CDS
TCATCCACCGGAACTCTCAT+TGG 0.418256 3_4:+82012858 None:intergenic
GTTCATTGATTAGGTTATGT+TGG 0.421290 3_4:-82011986 Msa0527540:intron
TTTGTCATCCCAGTGCTGAT+TGG 0.425479 3_4:-82012909 Msa0527540:CDS
TCTAGGAAGTGTTCAGTCTC+TGG 0.429699 3_4:-82011440 Msa0527540:three_prime_UTR
AATGAAGCTGCAACTTCTAC+AGG 0.432112 3_4:-82011592 Msa0527540:CDS
TCTCAAGATATGGACTAGAT+TGG 0.436470 3_4:-82012787 Msa0527540:intron
CGTGATGACCGGTATCTGAT+TGG 0.441015 3_4:-82011655 Msa0527540:CDS
CCAATGCCCAGTCTTGATAA+AGG 0.443572 3_4:+82012820 None:intergenic
AGAATGCATGCTAAGATAGA+TGG 0.446821 3_4:-82011201 Msa0527540:three_prime_UTR
GGACCACATGATGCCTCTAA+TGG 0.447991 3_4:-82011965 Msa0527540:CDS
TCCTTACCCATATAGACAAA+AGG 0.453024 3_4:+82013041 None:intergenic
TGTCTATCGATTTGCATGGT+TGG 0.454226 3_4:-82011755 Msa0527540:CDS
TGTTCAGTCTCTGGCTGGCA+TGG 0.460400 3_4:-82011431 Msa0527540:three_prime_UTR
CCTTTATCAAGACTGGGCAT+TGG 0.460541 3_4:-82012820 Msa0527540:CDS
GTCTGAGTGAATTGTTTGTC+AGG 0.472018 3_4:-82011475 Msa0527540:exon
TCCAGCACTTGGGTACCCAT+TGG 0.472600 3_4:-82011791 Msa0527540:CDS
GCAGGGTCTTTGGGTCCTAC+GGG 0.477110 3_4:-82011887 Msa0527540:CDS
ACACCTCTGGCCAAAACATA+AGG 0.478364 3_4:+82011817 None:intergenic
ATTGAGGCACGTAAATCAAC+AGG 0.478520 3_4:-82011500 Msa0527540:CDS
TGCAACTTCTACAGGAGTGC+AGG 0.481879 3_4:-82011584 Msa0527540:CDS
GAATTGTTTGTCAGGTAGGA+AGG 0.491726 3_4:-82011467 Msa0527540:three_prime_UTR
GGTAGTTGTACCAATATCAC+TGG 0.491978 3_4:-82013354 Msa0527540:CDS
CCTGTTAATTTATGGTGCGT+TGG 0.493310 3_4:-82011157 Msa0527540:three_prime_UTR
CATTGTGCCAATGAGAGTTC+CGG 0.493623 3_4:-82012865 Msa0527540:CDS
AGCACTTGGGTACCCATTGG+TGG 0.494455 3_4:-82011788 Msa0527540:CDS
CTCCGAAGTTATGCAACCTC+CGG 0.500070 3_4:+82011632 None:intergenic
AAGAGAAGCCCAATCAGCAC+TGG 0.501798 3_4:+82012900 None:intergenic
GACCCAAAGACCCTGCAGCC+TGG 0.507054 3_4:+82011894 None:intergenic
CAAGATCGTGATGCAGATGT+TGG 0.510770 3_4:-82011529 Msa0527540:CDS
ACCAATGGGTACCCAAGTGC+TGG 0.511099 3_4:+82011790 None:intergenic
CAGATGTTGGACTTCGATTG+AGG 0.514689 3_4:-82011516 Msa0527540:CDS
CACATAACTTCCAATGATGA+AGG 0.514754 3_4:+82013180 None:intergenic
CCTTGTCTTCAACTCTGCCC+TGG 0.515034 3_4:-82013375 Msa0527540:CDS
AGTTATAGGAAGACGAGGAA+TGG 0.522267 3_4:+82013313 None:intergenic
CAATCGAGCAAATTAGAAAA+CGG 0.522531 3_4:-82013126 Msa0527540:CDS
CCTCGTCTTCCTATAACTCA+TGG 0.525560 3_4:-82013308 Msa0527540:CDS
GTGATATTGGTACAACTACC+AGG 0.531686 3_4:+82013357 None:intergenic
GATGGTTTCTCCAGGCTGCA+GGG 0.531938 3_4:-82011904 Msa0527540:CDS
GGAAGTGTTCAGTCTCTGGC+TGG 0.536458 3_4:-82011436 Msa0527540:three_prime_UTR
ACAGCAGAATTGACCACCAA+TGG 0.542480 3_4:+82011775 None:intergenic
TGAGAGATGATGGTTTCTCC+AGG 0.544493 3_4:-82011912 Msa0527540:CDS
GAACCAGACATGAAATCTCT+TGG 0.545546 3_4:+82011699 None:intergenic
TGTTGAACCAAATTTGGAAG+TGG 0.546731 3_4:-82013090 Msa0527540:CDS
GGCCGGAGGTTGCATAACTT+CGG 0.552041 3_4:-82011634 Msa0527540:CDS
CTGCTGTCTATCGATTTGCA+TGG 0.552900 3_4:-82011759 Msa0527540:CDS
TTGGCGAGTAAAGTTTGAGA+GGG 0.553067 3_4:-82011935 Msa0527540:CDS
CAGCAGAATTGACCACCAAT+GGG 0.553975 3_4:+82011776 None:intergenic
GAGTGAATTGTTTGTCAGGT+AGG 0.555543 3_4:-82011471 Msa0527540:three_prime_UTR
ACAATTCAATTCGTGATGAC+CGG 0.559314 3_4:-82011666 Msa0527540:CDS
CCTTACCCATATAGACAAAA+GGG 0.559557 3_4:+82013042 None:intergenic
AAGTGCTGGAAACACACCTC+TGG 0.559718 3_4:+82011804 None:intergenic
GAGGTGTGTTTCCAGCACTT+GGG 0.565419 3_4:-82011801 Msa0527540:CDS
ATTCCTCCTTTATCAAGACT+GGG 0.575230 3_4:-82012826 Msa0527540:CDS
ACCTCCGGCCAATCAGATAC+CGG 0.575902 3_4:+82011647 None:intergenic
CCAGGGCAGAGTTGAAGACA+AGG 0.576280 3_4:+82013375 None:intergenic
ATAGATAGAGTATTGCATAC+AGG 0.579081 3_4:+82011386 None:intergenic
ATGACCGGTATCTGATTGGC+CGG 0.580036 3_4:-82011651 Msa0527540:CDS
CAATGCTTAGTAAAGAGTTG+AGG 0.583399 3_4:-82011076 Msa0527540:three_prime_UTR
GTTGGCGAGTAAAGTTTGAG+AGG 0.584638 3_4:-82011936 Msa0527540:CDS
ACTCATGGCATTAAGTGCAA+TGG 0.584649 3_4:-82013293 Msa0527540:intron
TCAGGTAGGAAGGAATCTCT+AGG 0.588292 3_4:-82011457 Msa0527540:three_prime_UTR
AAGAACAATGCGAAGTGCAA+AGG 0.595024 3_4:+82013424 None:intergenic
TGCCTCTAATGGATGAAAGT+TGG 0.598881 3_4:-82011954 Msa0527540:CDS
AGAGAAGCCCAATCAGCACT+GGG 0.614681 3_4:+82012901 None:intergenic
AACACACGAAACTGAAAGAG+AGG 0.616372 3_4:+82011728 None:intergenic
TTGTACCAATATCACTGGGA+AGG 0.623748 3_4:-82013349 Msa0527540:CDS
AATACTGGACTTTCATCCAC+CGG 0.628533 3_4:+82012846 None:intergenic
CCATGAGTTATAGGAAGACG+AGG 0.632867 3_4:+82013308 None:intergenic
GGTCATCACGAATTGAATTG+TGG 0.642672 3_4:+82011668 None:intergenic
ACCGGTATCTGATTGGCCGG+AGG 0.647436 3_4:-82011648 Msa0527540:CDS
CATCCATTAGAGGCATCATG+TGG 0.655656 3_4:+82011962 None:intergenic
TGTGCCAATGAGAGTTCCGG+TGG 0.678961 3_4:-82012862 Msa0527540:CDS
GTAGTTGTACCAATATCACT+GGG 0.680967 3_4:-82013353 Msa0527540:CDS
ATGCCCAGTCTTGATAAAGG+AGG 0.687851 3_4:+82012823 None:intergenic
TTGGAAGAACAATCTCCCGT+AGG 0.698657 3_4:+82011872 None:intergenic
TGATATTGGTACAACTACCA+GGG 0.700682 3_4:+82013358 None:intergenic
TCGAGCAAATTAGAAAACGG+AGG 0.702540 3_4:-82013123 Msa0527540:CDS
GAGGCACGTAAATCAACAGG+CGG 0.720143 3_4:-82011497 Msa0527540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATATTTTTTTTTATTTT+TGG - chr3_4:82013269-82013288 Msa0527540:intron 0.0%
!!! TTTATATTTTTTTTTATTTT+TGG - chr3_4:82013269-82013288 Msa0527540:intron 0.0%
!!! CGTTTTTTTTTTTTTTTTTT+TGG - chr3_4:82011561-82011580 Msa0527540:CDS 10.0%
!!! CGTTTTTTTTTTTTTTTTTT+TGG - chr3_4:82011561-82011580 Msa0527540:CDS 10.0%
!! AATTTATGCATTATCAAATT+GGG + chr3_4:82011516-82011535 None:intergenic 15.0%
!! AAATTTATGCATTATCAAAT+TGG + chr3_4:82011517-82011536 None:intergenic 15.0%
!!! ATAAATTTTCATTTGTTCTT+TGG - chr3_4:82011529-82011548 Msa0527540:CDS 15.0%
!! ATAAATTCAAGAAAATTTCT+AGG + chr3_4:82011974-82011993 None:intergenic 15.0%
!! AGATTCATAGTTAATATAAT+TGG - chr3_4:82012181-82012200 Msa0527540:intron 15.0%
!! TAAATAATTTAGCTAATAGT+AGG - chr3_4:82013223-82013242 Msa0527540:intron 15.0%
!! AATTTATGCATTATCAAATT+GGG + chr3_4:82011516-82011535 None:intergenic 15.0%
!! AAATTTATGCATTATCAAAT+TGG + chr3_4:82011517-82011536 None:intergenic 15.0%
!!! ATAAATTTTCATTTGTTCTT+TGG - chr3_4:82011529-82011548 Msa0527540:CDS 15.0%
!! ATAAATTCAAGAAAATTTCT+AGG + chr3_4:82011974-82011993 None:intergenic 15.0%
!! AGATTCATAGTTAATATAAT+TGG - chr3_4:82012181-82012200 Msa0527540:intron 15.0%
!! TAAATAATTTAGCTAATAGT+AGG - chr3_4:82013223-82013242 Msa0527540:intron 15.0%
!!! ACTAATGATGTTGATTTTTT+TGG - chr3_4:82012111-82012130 Msa0527540:intron 20.0%
!!! CTAATGATGTTGATTTTTTT+GGG - chr3_4:82012112-82012131 Msa0527540:intron 20.0%
!!! TAATGATGTTGATTTTTTTG+GGG - chr3_4:82012113-82012132 Msa0527540:intron 20.0%
!!! ACTAATGATGTTGATTTTTT+TGG - chr3_4:82012111-82012130 Msa0527540:intron 20.0%
!!! CTAATGATGTTGATTTTTTT+GGG - chr3_4:82012112-82012131 Msa0527540:intron 20.0%
!!! TAATGATGTTGATTTTTTTG+GGG - chr3_4:82012113-82012132 Msa0527540:intron 20.0%
! TCCATATCTTGAGAAATATA+AGG + chr3_4:82011709-82011728 None:intergenic 25.0%
! CAGAGGAAAAAAAATAATGA+AGG + chr3_4:82011752-82011771 None:intergenic 25.0%
! AATCAACAAAAGATTAACAG+AGG + chr3_4:82011769-82011788 None:intergenic 25.0%
!! TCTGTTAATCTTTTGTTGAT+TGG - chr3_4:82011768-82011787 Msa0527540:CDS 25.0%
! CCATGTAATCTAAATTAAGA+TGG + chr3_4:82011884-82011903 None:intergenic 25.0%
! CCATCTTAATTTAGATTACA+TGG - chr3_4:82011881-82011900 Msa0527540:CDS 25.0%
!!! GGATATATGAGTTTTATTAG+AGG - chr3_4:82012202-82012221 Msa0527540:intron 25.0%
! GGAAATTCATCATCTAAAAA+CGG + chr3_4:82012266-82012285 None:intergenic 25.0%
!!! AACATTTTGGCAATTTCTTT+TGG + chr3_4:82012314-82012333 None:intergenic 25.0%
! TTTCACATCTGACTAATAAT+AGG - chr3_4:82012333-82012352 Msa0527540:intron 25.0%
! TTCACATCTGACTAATAATA+GGG - chr3_4:82012334-82012353 Msa0527540:intron 25.0%
! AAACAACAAAAAACTACCAA+TGG + chr3_4:82012400-82012419 None:intergenic 25.0%
! GTCAATAGTTTCATTATGAT+TGG + chr3_4:82012652-82012671 None:intergenic 25.0%
!!! CGATCTTGTTGATTTATATT+TGG + chr3_4:82012961-82012980 None:intergenic 25.0%
! AGAAGTTTCCTGTTAATTTA+TGG - chr3_4:82013337-82013356 Msa0527540:CDS 25.0%
! TCCATATCTTGAGAAATATA+AGG + chr3_4:82011709-82011728 None:intergenic 25.0%
! CAGAGGAAAAAAAATAATGA+AGG + chr3_4:82011752-82011771 None:intergenic 25.0%
! AATCAACAAAAGATTAACAG+AGG + chr3_4:82011769-82011788 None:intergenic 25.0%
!! TCTGTTAATCTTTTGTTGAT+TGG - chr3_4:82011768-82011787 Msa0527540:CDS 25.0%
! CCATGTAATCTAAATTAAGA+TGG + chr3_4:82011884-82011903 None:intergenic 25.0%
! CCATCTTAATTTAGATTACA+TGG - chr3_4:82011881-82011900 Msa0527540:CDS 25.0%
!!! GGATATATGAGTTTTATTAG+AGG - chr3_4:82012202-82012221 Msa0527540:intron 25.0%
! GGAAATTCATCATCTAAAAA+CGG + chr3_4:82012266-82012285 None:intergenic 25.0%
!!! AACATTTTGGCAATTTCTTT+TGG + chr3_4:82012314-82012333 None:intergenic 25.0%
! TTTCACATCTGACTAATAAT+AGG - chr3_4:82012333-82012352 Msa0527540:intron 25.0%
! TTCACATCTGACTAATAATA+GGG - chr3_4:82012334-82012353 Msa0527540:intron 25.0%
! AAACAACAAAAAACTACCAA+TGG + chr3_4:82012400-82012419 None:intergenic 25.0%
! GTCAATAGTTTCATTATGAT+TGG + chr3_4:82012652-82012671 None:intergenic 25.0%
!!! CGATCTTGTTGATTTATATT+TGG + chr3_4:82012961-82012980 None:intergenic 25.0%
! AGAAGTTTCCTGTTAATTTA+TGG - chr3_4:82013337-82013356 Msa0527540:CDS 25.0%
CAATCGAGCAAATTAGAAAA+CGG - chr3_4:82011376-82011395 Msa0527540:three_prime_UTR 30.0%
!!! CAGTTTTGTTGAACCAAATT+TGG - chr3_4:82011406-82011425 Msa0527540:three_prime_UTR 30.0%
GCCTTATATTTCTCAAGATA+TGG - chr3_4:82011705-82011724 Msa0527540:CDS 30.0%
!! GCATTTAAAGAAGTTGATAG+AGG + chr3_4:82011813-82011832 None:intergenic 30.0%
TAAATGCATGCTATCATATC+TGG - chr3_4:82011852-82011871 Msa0527540:CDS 30.0%
CTATTTCATGTCTCATTACA+TGG + chr3_4:82012016-82012035 None:intergenic 30.0%
CATGTAATGAGACATGAAAT+AGG - chr3_4:82012014-82012033 Msa0527540:intron 30.0%
CATCAAATGAGAATACCATA+AGG + chr3_4:82012051-82012070 None:intergenic 30.0%
!!! GATTTTTTTGGGGATTGTAA+TGG - chr3_4:82012123-82012142 Msa0527540:intron 30.0%
! TAATTCTTTTGTCAGCTGAA+TGG + chr3_4:82012287-82012306 None:intergenic 30.0%
! AGTCAGATGTGAAAACATTT+TGG + chr3_4:82012327-82012346 None:intergenic 30.0%
!!! TTTTGTTGTTTTTGTGTCAC+TGG - chr3_4:82012409-82012428 Msa0527540:intron 30.0%
TGATTGTTAGAACAAACCTT+GGG + chr3_4:82012461-82012480 None:intergenic 30.0%
TTGATTGTTAGAACAAACCT+TGG + chr3_4:82012462-82012481 None:intergenic 30.0%
! GGTTTGTTCTAACAATCAAT+TGG - chr3_4:82012463-82012482 Msa0527540:intron 30.0%
!! ATGTTCTTCTAGTATTGACT+TGG - chr3_4:82012494-82012513 Msa0527540:intron 30.0%
!! ATTGACTTGGTTCATTGATT+AGG - chr3_4:82012507-82012526 Msa0527540:intron 30.0%
! GTTCATTGATTAGGTTATGT+TGG - chr3_4:82012516-82012535 Msa0527540:intron 30.0%
! GTTATGTGTACCTTATGTTT+TGG - chr3_4:82012675-82012694 Msa0527540:intron 30.0%
!! ATAGATAGAGTATTGCATAC+AGG + chr3_4:82013119-82013138 None:intergenic 30.0%
CAATCGAGCAAATTAGAAAA+CGG - chr3_4:82011376-82011395 Msa0527540:three_prime_UTR 30.0%
!!! CAGTTTTGTTGAACCAAATT+TGG - chr3_4:82011406-82011425 Msa0527540:three_prime_UTR 30.0%
GCCTTATATTTCTCAAGATA+TGG - chr3_4:82011705-82011724 Msa0527540:CDS 30.0%
!! GCATTTAAAGAAGTTGATAG+AGG + chr3_4:82011813-82011832 None:intergenic 30.0%
TAAATGCATGCTATCATATC+TGG - chr3_4:82011852-82011871 Msa0527540:CDS 30.0%
CTATTTCATGTCTCATTACA+TGG + chr3_4:82012016-82012035 None:intergenic 30.0%
CATGTAATGAGACATGAAAT+AGG - chr3_4:82012014-82012033 Msa0527540:intron 30.0%
CATCAAATGAGAATACCATA+AGG + chr3_4:82012051-82012070 None:intergenic 30.0%
!!! GATTTTTTTGGGGATTGTAA+TGG - chr3_4:82012123-82012142 Msa0527540:intron 30.0%
! TAATTCTTTTGTCAGCTGAA+TGG + chr3_4:82012287-82012306 None:intergenic 30.0%
! AGTCAGATGTGAAAACATTT+TGG + chr3_4:82012327-82012346 None:intergenic 30.0%
!!! TTTTGTTGTTTTTGTGTCAC+TGG - chr3_4:82012409-82012428 Msa0527540:intron 30.0%
TGATTGTTAGAACAAACCTT+GGG + chr3_4:82012461-82012480 None:intergenic 30.0%
TTGATTGTTAGAACAAACCT+TGG + chr3_4:82012462-82012481 None:intergenic 30.0%
! GGTTTGTTCTAACAATCAAT+TGG - chr3_4:82012463-82012482 Msa0527540:intron 30.0%
!! ATGTTCTTCTAGTATTGACT+TGG - chr3_4:82012494-82012513 Msa0527540:intron 30.0%
!! ATTGACTTGGTTCATTGATT+AGG - chr3_4:82012507-82012526 Msa0527540:intron 30.0%
! GTTCATTGATTAGGTTATGT+TGG - chr3_4:82012516-82012535 Msa0527540:intron 30.0%
! GTTATGTGTACCTTATGTTT+TGG - chr3_4:82012675-82012694 Msa0527540:intron 30.0%
!! ATAGATAGAGTATTGCATAC+AGG + chr3_4:82013119-82013138 None:intergenic 30.0%
TGATATTGGTACAACTACCA+GGG + chr3_4:82011147-82011166 None:intergenic 35.0%
GTAGTTGTACCAATATCACT+GGG - chr3_4:82011149-82011168 Msa0527540:three_prime_UTR 35.0%
CACTTAATGCCATGAGTTAT+AGG + chr3_4:82011206-82011225 None:intergenic 35.0%
CACATAACTTCCAATGATGA+AGG + chr3_4:82011325-82011344 None:intergenic 35.0%
TCATTGGAAGTTATGTGATC+TGG - chr3_4:82011328-82011347 Msa0527540:three_prime_UTR 35.0%
TGTTGAACCAAATTTGGAAG+TGG - chr3_4:82011412-82011431 Msa0527540:three_prime_UTR 35.0%
! TTCTGCCCTTTTGTCTATAT+GGG - chr3_4:82011455-82011474 Msa0527540:three_prime_UTR 35.0%
CCTTACCCATATAGACAAAA+GGG + chr3_4:82011463-82011482 None:intergenic 35.0%
TCCTTACCCATATAGACAAA+AGG + chr3_4:82011464-82011483 None:intergenic 35.0%
TCTTGATAAAGGAGGAATAC+TGG + chr3_4:82011674-82011693 None:intergenic 35.0%
TATTCCTCCTTTATCAAGAC+TGG - chr3_4:82011675-82011694 Msa0527540:CDS 35.0%
ATTCCTCCTTTATCAAGACT+GGG - chr3_4:82011676-82011695 Msa0527540:CDS 35.0%
!! TCTCAAGATATGGACTAGAT+TGG - chr3_4:82011715-82011734 Msa0527540:CDS 35.0%
TAGGCACTATATTGTCCTTA+TGG - chr3_4:82012033-82012052 Msa0527540:intron 35.0%
CATCATCTAAAAACGGTAGA+TGG + chr3_4:82012259-82012278 None:intergenic 35.0%
CAACAAAAAACTACCAATGG+CGG + chr3_4:82012397-82012416 None:intergenic 35.0%
ACAGATAACCCATCTACAAA+TGG + chr3_4:82012435-82012454 None:intergenic 35.0%
GATTGTTAGAACAAACCTTG+GGG + chr3_4:82012460-82012479 None:intergenic 35.0%
ACAATTCAATTCGTGATGAC+CGG - chr3_4:82012836-82012855 Msa0527540:CDS 35.0%
AGAATGCATGCTAAGATAGA+TGG - chr3_4:82013301-82013320 Msa0527540:CDS 35.0%
CAATGCTTAGTAAAGAGTTG+AGG - chr3_4:82013426-82013445 Msa0527540:five_prime_UTR 35.0%
TGATATTGGTACAACTACCA+GGG + chr3_4:82011147-82011166 None:intergenic 35.0%
GTAGTTGTACCAATATCACT+GGG - chr3_4:82011149-82011168 Msa0527540:three_prime_UTR 35.0%
CACTTAATGCCATGAGTTAT+AGG + chr3_4:82011206-82011225 None:intergenic 35.0%
CACATAACTTCCAATGATGA+AGG + chr3_4:82011325-82011344 None:intergenic 35.0%
TCATTGGAAGTTATGTGATC+TGG - chr3_4:82011328-82011347 Msa0527540:three_prime_UTR 35.0%
TGTTGAACCAAATTTGGAAG+TGG - chr3_4:82011412-82011431 Msa0527540:three_prime_UTR 35.0%
! TTCTGCCCTTTTGTCTATAT+GGG - chr3_4:82011455-82011474 Msa0527540:three_prime_UTR 35.0%
CCTTACCCATATAGACAAAA+GGG + chr3_4:82011463-82011482 None:intergenic 35.0%
TCCTTACCCATATAGACAAA+AGG + chr3_4:82011464-82011483 None:intergenic 35.0%
TCTTGATAAAGGAGGAATAC+TGG + chr3_4:82011674-82011693 None:intergenic 35.0%
TATTCCTCCTTTATCAAGAC+TGG - chr3_4:82011675-82011694 Msa0527540:CDS 35.0%
ATTCCTCCTTTATCAAGACT+GGG - chr3_4:82011676-82011695 Msa0527540:CDS 35.0%
!! TCTCAAGATATGGACTAGAT+TGG - chr3_4:82011715-82011734 Msa0527540:CDS 35.0%
TAGGCACTATATTGTCCTTA+TGG - chr3_4:82012033-82012052 Msa0527540:intron 35.0%
CATCATCTAAAAACGGTAGA+TGG + chr3_4:82012259-82012278 None:intergenic 35.0%
CAACAAAAAACTACCAATGG+CGG + chr3_4:82012397-82012416 None:intergenic 35.0%
ACAGATAACCCATCTACAAA+TGG + chr3_4:82012435-82012454 None:intergenic 35.0%
GATTGTTAGAACAAACCTTG+GGG + chr3_4:82012460-82012479 None:intergenic 35.0%
ACAATTCAATTCGTGATGAC+CGG - chr3_4:82012836-82012855 Msa0527540:CDS 35.0%
AGAATGCATGCTAAGATAGA+TGG - chr3_4:82013301-82013320 Msa0527540:CDS 35.0%
CAATGCTTAGTAAAGAGTTG+AGG - chr3_4:82013426-82013445 Msa0527540:five_prime_UTR 35.0%
AAGAACAATGCGAAGTGCAA+AGG + chr3_4:82011081-82011100 None:intergenic 40.0%
GTGATATTGGTACAACTACC+AGG + chr3_4:82011148-82011167 None:intergenic 40.0%
GGTAGTTGTACCAATATCAC+TGG - chr3_4:82011148-82011167 Msa0527540:three_prime_UTR 40.0%
TTGTACCAATATCACTGGGA+AGG - chr3_4:82011153-82011172 Msa0527540:three_prime_UTR 40.0%
AGTATCCTTCCCAGTGATAT+TGG + chr3_4:82011161-82011180 None:intergenic 40.0%
AGTTATAGGAAGACGAGGAA+TGG + chr3_4:82011192-82011211 None:intergenic 40.0%
ACTCATGGCATTAAGTGCAA+TGG - chr3_4:82011209-82011228 Msa0527540:three_prime_UTR 40.0%
GATCTGTATGCCTTCATCAT+TGG - chr3_4:82011312-82011331 Msa0527540:three_prime_UTR 40.0%
TCGAGCAAATTAGAAAACGG+AGG - chr3_4:82011379-82011398 Msa0527540:three_prime_UTR 40.0%
TGCTACACCACTTCCAAATT+TGG + chr3_4:82011422-82011441 None:intergenic 40.0%
! GTTCTGCCCTTTTGTCTATA+TGG - chr3_4:82011454-82011473 Msa0527540:three_prime_UTR 40.0%
! CCCTTTTGTCTATATGGGTA+AGG - chr3_4:82011460-82011479 Msa0527540:three_prime_UTR 40.0%
AATACTGGACTTTCATCCAC+CGG + chr3_4:82011659-82011678 None:intergenic 40.0%
CTTTATCAAGACTGGGCATT+GGG - chr3_4:82011683-82011702 Msa0527540:CDS 40.0%
AGTTACTTGAGTAGAGCAGA+AGG + chr3_4:82011907-82011926 None:intergenic 40.0%
AAATGTATCCTGCTGTGCAT+TGG - chr3_4:82011930-82011949 Msa0527540:CDS 40.0%
TTTGGGGATTGTAATGGCAA+TGG - chr3_4:82012129-82012148 Msa0527540:intron 40.0%
AGAAACTAGTGTACTCAGTG+AGG + chr3_4:82012234-82012253 None:intergenic 40.0%
GAGAGACTGAAAAAGAAACG+AGG + chr3_4:82012371-82012390 None:intergenic 40.0%
! TGCCTCTAATGGATGAAAGT+TGG - chr3_4:82012548-82012567 Msa0527540:intron 40.0%
TTGGCGAGTAAAGTTTGAGA+GGG - chr3_4:82012567-82012586 Msa0527540:intron 40.0%
!! TGTCTATCGATTTGCATGGT+TGG - chr3_4:82012747-82012766 Msa0527540:intron 40.0%
!! GTCTATCGATTTGCATGGTT+GGG - chr3_4:82012748-82012767 Msa0527540:intron 40.0%
AACACACGAAACTGAAAGAG+AGG + chr3_4:82012777-82012796 None:intergenic 40.0%
GAACCAGACATGAAATCTCT+TGG + chr3_4:82012806-82012825 None:intergenic 40.0%
GGTCATCACGAATTGAATTG+TGG + chr3_4:82012837-82012856 None:intergenic 40.0%
AATGAAGCTGCAACTTCTAC+AGG - chr3_4:82012910-82012929 Msa0527540:CDS 40.0%
!!! GTGCAGGATGCTATTTTACT+TGG - chr3_4:82012934-82012953 Msa0527540:intron 40.0%
ATTGAGGCACGTAAATCAAC+AGG - chr3_4:82013002-82013021 Msa0527540:intron 40.0%
GTCTGAGTGAATTGTTTGTC+AGG - chr3_4:82013027-82013046 Msa0527540:intron 40.0%
GAGTGAATTGTTTGTCAGGT+AGG - chr3_4:82013031-82013050 Msa0527540:intron 40.0%
GAATTGTTTGTCAGGTAGGA+AGG - chr3_4:82013035-82013054 Msa0527540:intron 40.0%
CCAACGCACCATAAATTAAC+AGG + chr3_4:82013348-82013367 None:intergenic 40.0%
CCTGTTAATTTATGGTGCGT+TGG - chr3_4:82013345-82013364 Msa0527540:CDS 40.0%
AAGAACAATGCGAAGTGCAA+AGG + chr3_4:82011081-82011100 None:intergenic 40.0%
GTGATATTGGTACAACTACC+AGG + chr3_4:82011148-82011167 None:intergenic 40.0%
GGTAGTTGTACCAATATCAC+TGG - chr3_4:82011148-82011167 Msa0527540:three_prime_UTR 40.0%
TTGTACCAATATCACTGGGA+AGG - chr3_4:82011153-82011172 Msa0527540:three_prime_UTR 40.0%
AGTATCCTTCCCAGTGATAT+TGG + chr3_4:82011161-82011180 None:intergenic 40.0%
AGTTATAGGAAGACGAGGAA+TGG + chr3_4:82011192-82011211 None:intergenic 40.0%
ACTCATGGCATTAAGTGCAA+TGG - chr3_4:82011209-82011228 Msa0527540:three_prime_UTR 40.0%
GATCTGTATGCCTTCATCAT+TGG - chr3_4:82011312-82011331 Msa0527540:three_prime_UTR 40.0%
TCGAGCAAATTAGAAAACGG+AGG - chr3_4:82011379-82011398 Msa0527540:three_prime_UTR 40.0%
TGCTACACCACTTCCAAATT+TGG + chr3_4:82011422-82011441 None:intergenic 40.0%
! GTTCTGCCCTTTTGTCTATA+TGG - chr3_4:82011454-82011473 Msa0527540:three_prime_UTR 40.0%
! CCCTTTTGTCTATATGGGTA+AGG - chr3_4:82011460-82011479 Msa0527540:three_prime_UTR 40.0%
AATACTGGACTTTCATCCAC+CGG + chr3_4:82011659-82011678 None:intergenic 40.0%
CTTTATCAAGACTGGGCATT+GGG - chr3_4:82011683-82011702 Msa0527540:CDS 40.0%
AGTTACTTGAGTAGAGCAGA+AGG + chr3_4:82011907-82011926 None:intergenic 40.0%
AAATGTATCCTGCTGTGCAT+TGG - chr3_4:82011930-82011949 Msa0527540:CDS 40.0%
TTTGGGGATTGTAATGGCAA+TGG - chr3_4:82012129-82012148 Msa0527540:intron 40.0%
AGAAACTAGTGTACTCAGTG+AGG + chr3_4:82012234-82012253 None:intergenic 40.0%
GAGAGACTGAAAAAGAAACG+AGG + chr3_4:82012371-82012390 None:intergenic 40.0%
! TGCCTCTAATGGATGAAAGT+TGG - chr3_4:82012548-82012567 Msa0527540:intron 40.0%
TTGGCGAGTAAAGTTTGAGA+GGG - chr3_4:82012567-82012586 Msa0527540:intron 40.0%
!! TGTCTATCGATTTGCATGGT+TGG - chr3_4:82012747-82012766 Msa0527540:intron 40.0%
!! GTCTATCGATTTGCATGGTT+GGG - chr3_4:82012748-82012767 Msa0527540:intron 40.0%
AACACACGAAACTGAAAGAG+AGG + chr3_4:82012777-82012796 None:intergenic 40.0%
GAACCAGACATGAAATCTCT+TGG + chr3_4:82012806-82012825 None:intergenic 40.0%
GGTCATCACGAATTGAATTG+TGG + chr3_4:82012837-82012856 None:intergenic 40.0%
AATGAAGCTGCAACTTCTAC+AGG - chr3_4:82012910-82012929 Msa0527540:CDS 40.0%
!!! GTGCAGGATGCTATTTTACT+TGG - chr3_4:82012934-82012953 Msa0527540:intron 40.0%
ATTGAGGCACGTAAATCAAC+AGG - chr3_4:82013002-82013021 Msa0527540:intron 40.0%
GTCTGAGTGAATTGTTTGTC+AGG - chr3_4:82013027-82013046 Msa0527540:intron 40.0%
GAGTGAATTGTTTGTCAGGT+AGG - chr3_4:82013031-82013050 Msa0527540:intron 40.0%
GAATTGTTTGTCAGGTAGGA+AGG - chr3_4:82013035-82013054 Msa0527540:intron 40.0%
CCAACGCACCATAAATTAAC+AGG + chr3_4:82013348-82013367 None:intergenic 40.0%
CCTGTTAATTTATGGTGCGT+TGG - chr3_4:82013345-82013364 Msa0527540:CDS 40.0%
ACTTCGCATTGTTCTTCTGC+TGG - chr3_4:82011085-82011104 Msa0527540:three_prime_UTR 45.0%
TTCTTCTGCTGGTCATTGCT+TGG - chr3_4:82011096-82011115 Msa0527540:three_prime_UTR 45.0%
CCATGAGTTATAGGAAGACG+AGG + chr3_4:82011197-82011216 None:intergenic 45.0%
CCTCGTCTTCCTATAACTCA+TGG - chr3_4:82011194-82011213 Msa0527540:three_prime_UTR 45.0%
!! TTTGTCATCCCAGTGCTGAT+TGG - chr3_4:82011593-82011612 Msa0527540:CDS 45.0%
!! TTGTCATCCCAGTGCTGATT+GGG - chr3_4:82011594-82011613 Msa0527540:CDS 45.0%
! TGGGCTTCTCTTTGAGCTTT+TGG - chr3_4:82011613-82011632 Msa0527540:CDS 45.0%
CATTGTGCCAATGAGAGTTC+CGG - chr3_4:82011637-82011656 Msa0527540:CDS 45.0%
ATGCCCAGTCTTGATAAAGG+AGG + chr3_4:82011682-82011701 None:intergenic 45.0%
CCAATGCCCAGTCTTGATAA+AGG + chr3_4:82011685-82011704 None:intergenic 45.0%
CCTTTATCAAGACTGGGCAT+TGG - chr3_4:82011682-82011701 Msa0527540:CDS 45.0%
TGTCACTGGCCATTTGTAGA+TGG - chr3_4:82012423-82012442 Msa0527540:intron 45.0%
GTCACTGGCCATTTGTAGAT+GGG - chr3_4:82012424-82012443 Msa0527540:intron 45.0%
!! CATCCATTAGAGGCATCATG+TGG + chr3_4:82012543-82012562 None:intergenic 45.0%
CGCCAACTTTCATCCATTAG+AGG + chr3_4:82012553-82012572 None:intergenic 45.0%
GTTGGCGAGTAAAGTTTGAG+AGG - chr3_4:82012566-82012585 Msa0527540:intron 45.0%
TTTGAGAGGGTGAGAGATGA+TGG - chr3_4:82012580-82012599 Msa0527540:intron 45.0%
! TGAGAGATGATGGTTTCTCC+AGG - chr3_4:82012590-82012609 Msa0527540:intron 45.0%
TTGGAAGAACAATCTCCCGT+AGG + chr3_4:82012633-82012652 None:intergenic 45.0%
!!! GTACCTTATGTTTTGGCCAG+AGG - chr3_4:82012682-82012701 Msa0527540:intron 45.0%
ACACCTCTGGCCAAAACATA+AGG + chr3_4:82012688-82012707 None:intergenic 45.0%
CAGCAGAATTGACCACCAAT+GGG + chr3_4:82012729-82012748 None:intergenic 45.0%
ACAGCAGAATTGACCACCAA+TGG + chr3_4:82012730-82012749 None:intergenic 45.0%
!! CTGCTGTCTATCGATTTGCA+TGG - chr3_4:82012743-82012762 Msa0527540:intron 45.0%
GTGCCAAGAGATTTCATGTC+TGG - chr3_4:82012800-82012819 Msa0527540:CDS 45.0%
CAAGATCGTGATGCAGATGT+TGG - chr3_4:82012973-82012992 Msa0527540:intron 45.0%
CAGATGTTGGACTTCGATTG+AGG - chr3_4:82012986-82013005 Msa0527540:intron 45.0%
TCAGGTAGGAAGGAATCTCT+AGG - chr3_4:82013045-82013064 Msa0527540:intron 45.0%
!! TCTAGGAAGTGTTCAGTCTC+TGG - chr3_4:82013062-82013081 Msa0527540:CDS 45.0%
ACTTCGCATTGTTCTTCTGC+TGG - chr3_4:82011085-82011104 Msa0527540:three_prime_UTR 45.0%
TTCTTCTGCTGGTCATTGCT+TGG - chr3_4:82011096-82011115 Msa0527540:three_prime_UTR 45.0%
CCATGAGTTATAGGAAGACG+AGG + chr3_4:82011197-82011216 None:intergenic 45.0%
CCTCGTCTTCCTATAACTCA+TGG - chr3_4:82011194-82011213 Msa0527540:three_prime_UTR 45.0%
!! TTTGTCATCCCAGTGCTGAT+TGG - chr3_4:82011593-82011612 Msa0527540:CDS 45.0%
!! TTGTCATCCCAGTGCTGATT+GGG - chr3_4:82011594-82011613 Msa0527540:CDS 45.0%
! TGGGCTTCTCTTTGAGCTTT+TGG - chr3_4:82011613-82011632 Msa0527540:CDS 45.0%
CATTGTGCCAATGAGAGTTC+CGG - chr3_4:82011637-82011656 Msa0527540:CDS 45.0%
ATGCCCAGTCTTGATAAAGG+AGG + chr3_4:82011682-82011701 None:intergenic 45.0%
CCAATGCCCAGTCTTGATAA+AGG + chr3_4:82011685-82011704 None:intergenic 45.0%
CCTTTATCAAGACTGGGCAT+TGG - chr3_4:82011682-82011701 Msa0527540:CDS 45.0%
TGTCACTGGCCATTTGTAGA+TGG - chr3_4:82012423-82012442 Msa0527540:intron 45.0%
GTCACTGGCCATTTGTAGAT+GGG - chr3_4:82012424-82012443 Msa0527540:intron 45.0%
!! CATCCATTAGAGGCATCATG+TGG + chr3_4:82012543-82012562 None:intergenic 45.0%
CGCCAACTTTCATCCATTAG+AGG + chr3_4:82012553-82012572 None:intergenic 45.0%
GTTGGCGAGTAAAGTTTGAG+AGG - chr3_4:82012566-82012585 Msa0527540:intron 45.0%
TTTGAGAGGGTGAGAGATGA+TGG - chr3_4:82012580-82012599 Msa0527540:intron 45.0%
! TGAGAGATGATGGTTTCTCC+AGG - chr3_4:82012590-82012609 Msa0527540:intron 45.0%
TTGGAAGAACAATCTCCCGT+AGG + chr3_4:82012633-82012652 None:intergenic 45.0%
!!! GTACCTTATGTTTTGGCCAG+AGG - chr3_4:82012682-82012701 Msa0527540:intron 45.0%
ACACCTCTGGCCAAAACATA+AGG + chr3_4:82012688-82012707 None:intergenic 45.0%
CAGCAGAATTGACCACCAAT+GGG + chr3_4:82012729-82012748 None:intergenic 45.0%
ACAGCAGAATTGACCACCAA+TGG + chr3_4:82012730-82012749 None:intergenic 45.0%
!! CTGCTGTCTATCGATTTGCA+TGG - chr3_4:82012743-82012762 Msa0527540:intron 45.0%
GTGCCAAGAGATTTCATGTC+TGG - chr3_4:82012800-82012819 Msa0527540:CDS 45.0%
CAAGATCGTGATGCAGATGT+TGG - chr3_4:82012973-82012992 Msa0527540:intron 45.0%
CAGATGTTGGACTTCGATTG+AGG - chr3_4:82012986-82013005 Msa0527540:intron 45.0%
TCAGGTAGGAAGGAATCTCT+AGG - chr3_4:82013045-82013064 Msa0527540:intron 45.0%
!! TCTAGGAAGTGTTCAGTCTC+TGG - chr3_4:82013062-82013081 Msa0527540:CDS 45.0%
AGAGAAGCCCAATCAGCACT+GGG + chr3_4:82011604-82011623 None:intergenic 50.0%
AAGAGAAGCCCAATCAGCAC+TGG + chr3_4:82011605-82011624 None:intergenic 50.0%
TCATCCACCGGAACTCTCAT+TGG + chr3_4:82011647-82011666 None:intergenic 50.0%
AATCGCTACCAATGCACAGC+AGG + chr3_4:82011941-82011960 None:intergenic 50.0%
TCAGTCTCTCTTTCCGCCAT+TGG - chr3_4:82012381-82012400 Msa0527540:intron 50.0%
! ATGGGTTATCTGTGTCCCCA+AGG - chr3_4:82012442-82012461 Msa0527540:intron 50.0%
GGACCACATGATGCCTCTAA+TGG - chr3_4:82012537-82012556 Msa0527540:intron 50.0%
!! AAGTGCTGGAAACACACCTC+TGG + chr3_4:82012701-82012720 None:intergenic 50.0%
! AGAGGTGTGTTTCCAGCACT+TGG - chr3_4:82012700-82012719 Msa0527540:intron 50.0%
GAGGTGTGTTTCCAGCACTT+GGG - chr3_4:82012701-82012720 Msa0527540:intron 50.0%
CGTGATGACCGGTATCTGAT+TGG - chr3_4:82012847-82012866 Msa0527540:CDS 50.0%
ATGACCGGTATCTGATTGGC+CGG - chr3_4:82012851-82012870 Msa0527540:CDS 50.0%
CTCCGAAGTTATGCAACCTC+CGG + chr3_4:82012873-82012892 None:intergenic 50.0%
! TGCAACTTCTACAGGAGTGC+AGG - chr3_4:82012918-82012937 Msa0527540:intron 50.0%
GAGGCACGTAAATCAACAGG+CGG - chr3_4:82013005-82013024 Msa0527540:intron 50.0%
AGAGAAGCCCAATCAGCACT+GGG + chr3_4:82011604-82011623 None:intergenic 50.0%
AAGAGAAGCCCAATCAGCAC+TGG + chr3_4:82011605-82011624 None:intergenic 50.0%
TCATCCACCGGAACTCTCAT+TGG + chr3_4:82011647-82011666 None:intergenic 50.0%
AATCGCTACCAATGCACAGC+AGG + chr3_4:82011941-82011960 None:intergenic 50.0%
TCAGTCTCTCTTTCCGCCAT+TGG - chr3_4:82012381-82012400 Msa0527540:intron 50.0%
! ATGGGTTATCTGTGTCCCCA+AGG - chr3_4:82012442-82012461 Msa0527540:intron 50.0%
GGACCACATGATGCCTCTAA+TGG - chr3_4:82012537-82012556 Msa0527540:intron 50.0%
!! AAGTGCTGGAAACACACCTC+TGG + chr3_4:82012701-82012720 None:intergenic 50.0%
! AGAGGTGTGTTTCCAGCACT+TGG - chr3_4:82012700-82012719 Msa0527540:intron 50.0%
GAGGTGTGTTTCCAGCACTT+GGG - chr3_4:82012701-82012720 Msa0527540:intron 50.0%
CGTGATGACCGGTATCTGAT+TGG - chr3_4:82012847-82012866 Msa0527540:CDS 50.0%
ATGACCGGTATCTGATTGGC+CGG - chr3_4:82012851-82012870 Msa0527540:CDS 50.0%
CTCCGAAGTTATGCAACCTC+CGG + chr3_4:82012873-82012892 None:intergenic 50.0%
! TGCAACTTCTACAGGAGTGC+AGG - chr3_4:82012918-82012937 Msa0527540:intron 50.0%
GAGGCACGTAAATCAACAGG+CGG - chr3_4:82013005-82013024 Msa0527540:intron 50.0%
CCAGGGCAGAGTTGAAGACA+AGG + chr3_4:82011130-82011149 None:intergenic 55.0%
CCTTGTCTTCAACTCTGCCC+TGG - chr3_4:82011127-82011146 Msa0527540:three_prime_UTR 55.0%
GTGATCTGGACTGCTGTTGC+TGG - chr3_4:82011342-82011361 Msa0527540:three_prime_UTR 55.0%
TGTGCCAATGAGAGTTCCGG+TGG - chr3_4:82011640-82011659 Msa0527540:CDS 55.0%
TGATGGTTTCTCCAGGCTGC+AGG - chr3_4:82012597-82012616 Msa0527540:intron 55.0%
GATGGTTTCTCCAGGCTGCA+GGG - chr3_4:82012598-82012617 Msa0527540:intron 55.0%
TGCAGGGTCTTTGGGTCCTA+CGG - chr3_4:82012614-82012633 Msa0527540:intron 55.0%
TCCAGCACTTGGGTACCCAT+TGG - chr3_4:82012711-82012730 Msa0527540:intron 55.0%
ACCAATGGGTACCCAAGTGC+TGG + chr3_4:82012715-82012734 None:intergenic 55.0%
AGCACTTGGGTACCCATTGG+TGG - chr3_4:82012714-82012733 Msa0527540:intron 55.0%
ACCTCCGGCCAATCAGATAC+CGG + chr3_4:82012858-82012877 None:intergenic 55.0%
GGCCGGAGGTTGCATAACTT+CGG - chr3_4:82012868-82012887 Msa0527540:CDS 55.0%
!! GGAAGTGTTCAGTCTCTGGC+TGG - chr3_4:82013066-82013085 Msa0527540:CDS 55.0%
TGTTCAGTCTCTGGCTGGCA+TGG - chr3_4:82013071-82013090 Msa0527540:CDS 55.0%
CCAGGGCAGAGTTGAAGACA+AGG + chr3_4:82011130-82011149 None:intergenic 55.0%
CCTTGTCTTCAACTCTGCCC+TGG - chr3_4:82011127-82011146 Msa0527540:three_prime_UTR 55.0%
GTGATCTGGACTGCTGTTGC+TGG - chr3_4:82011342-82011361 Msa0527540:three_prime_UTR 55.0%
TGTGCCAATGAGAGTTCCGG+TGG - chr3_4:82011640-82011659 Msa0527540:CDS 55.0%
TGATGGTTTCTCCAGGCTGC+AGG - chr3_4:82012597-82012616 Msa0527540:intron 55.0%
GATGGTTTCTCCAGGCTGCA+GGG - chr3_4:82012598-82012617 Msa0527540:intron 55.0%
TGCAGGGTCTTTGGGTCCTA+CGG - chr3_4:82012614-82012633 Msa0527540:intron 55.0%
TCCAGCACTTGGGTACCCAT+TGG - chr3_4:82012711-82012730 Msa0527540:intron 55.0%
ACCAATGGGTACCCAAGTGC+TGG + chr3_4:82012715-82012734 None:intergenic 55.0%
AGCACTTGGGTACCCATTGG+TGG - chr3_4:82012714-82012733 Msa0527540:intron 55.0%
ACCTCCGGCCAATCAGATAC+CGG + chr3_4:82012858-82012877 None:intergenic 55.0%
GGCCGGAGGTTGCATAACTT+CGG - chr3_4:82012868-82012887 Msa0527540:CDS 55.0%
!! GGAAGTGTTCAGTCTCTGGC+TGG - chr3_4:82013066-82013085 Msa0527540:CDS 55.0%
TGTTCAGTCTCTGGCTGGCA+TGG - chr3_4:82013071-82013090 Msa0527540:CDS 55.0%
TCTCCAGGCTGCAGGGTCTT+TGG - chr3_4:82012605-82012624 Msa0527540:intron 60.0%
CTCCAGGCTGCAGGGTCTTT+GGG - chr3_4:82012606-82012625 Msa0527540:intron 60.0%
GCAGGGTCTTTGGGTCCTAC+GGG - chr3_4:82012615-82012634 Msa0527540:intron 60.0%
! ACCGGTATCTGATTGGCCGG+AGG - chr3_4:82012854-82012873 Msa0527540:CDS 60.0%
TCTCCAGGCTGCAGGGTCTT+TGG - chr3_4:82012605-82012624 Msa0527540:intron 60.0%
CTCCAGGCTGCAGGGTCTTT+GGG - chr3_4:82012606-82012625 Msa0527540:intron 60.0%
GCAGGGTCTTTGGGTCCTAC+GGG - chr3_4:82012615-82012634 Msa0527540:intron 60.0%
! ACCGGTATCTGATTGGCCGG+AGG - chr3_4:82012854-82012873 Msa0527540:CDS 60.0%
GACCCAAAGACCCTGCAGCC+TGG + chr3_4:82012611-82012630 None:intergenic 65.0%
GACCCAAAGACCCTGCAGCC+TGG + chr3_4:82012611-82012630 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 82011070 82013454 82011070 ID=Msa0527540;Name=Msa0527540
chr3_4 mRNA 82011070 82013454 82011070 ID=Msa0527540-mRNA-1;Parent=Msa0527540;Name=Msa0527540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=49|1|1|1|1|1|4|422|308
chr3_4 exon 82011070 82011995 82011070 ID=Msa0527540-mRNA-1:exon:24808;Parent=Msa0527540-mRNA-1
chr3_4 exon 82012788 82012934 82012788 ID=Msa0527540-mRNA-1:exon:24807;Parent=Msa0527540-mRNA-1
chr3_4 exon 82013048 82013211 82013048 ID=Msa0527540-mRNA-1:exon:24806;Parent=Msa0527540-mRNA-1
chr3_4 exon 82013294 82013454 82013294 ID=Msa0527540-mRNA-1:exon:24805;Parent=Msa0527540-mRNA-1
chr3_4 five_prime_UTR 82013406 82013454 82013406 ID=Msa0527540-mRNA-1:five_prime_utr;Parent=Msa0527540-mRNA-1
chr3_4 CDS 82013294 82013405 82013294 ID=Msa0527540-mRNA-1:cds;Parent=Msa0527540-mRNA-1
chr3_4 CDS 82013048 82013211 82013048 ID=Msa0527540-mRNA-1:cds;Parent=Msa0527540-mRNA-1
chr3_4 CDS 82012788 82012934 82012788 ID=Msa0527540-mRNA-1:cds;Parent=Msa0527540-mRNA-1
chr3_4 CDS 82011492 82011995 82011492 ID=Msa0527540-mRNA-1:cds;Parent=Msa0527540-mRNA-1
chr3_4 three_prime_UTR 82011070 82011491 82011070 ID=Msa0527540-mRNA-1:three_prime_utr;Parent=Msa0527540-mRNA-1
Gene Sequence

>Msa0527540

ATGACACTCCTTGTCTTCAACTCTGCCCTGGTAGTTGTACCAATATCACTGGGAAGGATACTTTTCAACTCCATTCCTCGTCTTCCTATAACTCATGGCATTAAGTGCAATGATCTGTATGCCTTCATCATTGGAAGTTATGTGATCTGGACTGCTGTTGCTGGAGTTAGATACTCAATCGAGCAAATTAGAAAACGGAGGACTTCAGTTTTGTTGAACCAAATTTGGAAGTGGTGTAGCATTGTTGTCAAGAGTTCTGCCCTTTTGTCTATATGGATATTTGTCATCCCAGTGCTGATTGGGCTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCGGTGGATGAAAGTCCAGTATTCCTCCTTTATCAAGACTGGGCATTGGGCCTTATATTTCTCAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTAATGGATGAAAGTTGGCGAGTAAAGTTTGAGAGGGTGAGAGATGATGGTTTCTCCAGGCTGCAGGGTCTTTGGGTCCTACGGGAGATTGTTCTTCCAATCATAATGAAACTATTGACAGCGTTATGTGTACCTTATGTTTTGGCCAGAGGTGTGTTTCCAGCACTTGGGTACCCATTGGTGGTCAATTCTGCTGTCTATCGATTTGCATGGTTGGGATGCCTCTCTTTCAGTTTCGTGTGTTTTTGTGCCAAGAGATTTCATGTCTGGTTCACAAATCTCCACAATTCAATTCGTGATGACCGGTATCTGATTGGCCGGAGGTTGCATAACTTCGGAGAACATGTTGAGAAAGCAAATGAAGCTGCAACTTCTACAGGAGTGCAGGATGCTATTTTACTTGGTCCAAATATAAATCAACAAGATCGTGATGCAGATGTTGGACTTCGATTGAGGCACGTAAATCAACAGGCGGTCTGA

Protein sequence

>Msa0527540

MTLLVFNSALVVVPISLGRILFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIRKRRTSVLLNQIWKWCSIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLMDESWRVKFERVRDDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPALGYPLVVNSAVYRFAWLGCLSFSFVCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEHVEKANEAATSTGVQDAILLGPNINQQDRDADVGLRLRHVNQQAV*