Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167430 | RHN48623.1 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 5.41e-129 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167430 | sp|Q6V9I6|HDT1_SOLCH | 42.403 | 283 | 135 | 8 | 1 | 271 | 1 | 267 | 2.64e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167430 | A0A396H772 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 2.58e-129 | 377 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1167430 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1080030 | Msa1167430 | 0.945590 | 2.298365e-104 | -8.615850e-47 |
| Msa1090640 | Msa1167430 | 0.982108 | 2.990949e-154 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167430 | MtrunA17_Chr7g0265761 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 4.98e-133 | 377 |
| Msa1167430 | MtrunA17_Chr2g0320884 | 40.864 | 301 | 143 | 8 | 1 | 272 | 35 | 329 | 2.36e-42 | 147 |
| Msa1167430 | MtrunA17_Chr4g0027181 | 38.075 | 239 | 134 | 7 | 1 | 230 | 5 | 238 | 6.69e-28 | 108 |
| Msa1167430 | MtrunA17_Chr4g0027191 | 50.000 | 96 | 42 | 2 | 2 | 93 | 6 | 99 | 1.03e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167430 | AT5G03740.1 | 40.273 | 293 | 152 | 7 | 1 | 271 | 1 | 292 | 9.33e-48 | 160 |
| Msa1167430 | AT3G44750.2 | 36.996 | 273 | 137 | 6 | 1 | 271 | 1 | 240 | 7.49e-39 | 136 |
| Msa1167430 | AT3G44750.1 | 35.531 | 273 | 144 | 6 | 1 | 271 | 1 | 243 | 1.28e-36 | 130 |
| Msa1167430 | AT5G22650.2 | 34.722 | 288 | 132 | 9 | 1 | 247 | 1 | 273 | 4.36e-26 | 104 |
| Msa1167430 | AT5G22650.1 | 34.602 | 289 | 132 | 9 | 1 | 247 | 1 | 274 | 5.73e-26 | 104 |
| Msa1167430 | AT2G27840.4 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 8.79e-21 | 86.7 |
| Msa1167430 | AT2G27840.3 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 2.12e-20 | 87.0 |
| Msa1167430 | AT2G27840.1 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 3.39e-20 | 84.7 |
| Msa1167430 | AT2G27840.2 | 46.575 | 73 | 35 | 3 | 23 | 93 | 1 | 71 | 5.43e-11 | 60.8 |
Find 83 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTGCAGTCATGGAGTTT+TGG | 0.186768 | 7_4:-59906690 | Msa1167430:exon |
| GAAAATACAGTTGTTGATTT+AGG | 0.205019 | 7_4:-59902447 | Msa1167430:three_prime_UTR |
| GTTAGCATCTTGATCTTCTT+TGG | 0.207090 | 7_4:-59902484 | Msa1167430:three_prime_UTR |
| ATCTTGATCTTCTTTGGATC+TGG | 0.208948 | 7_4:-59902478 | Msa1167430:three_prime_UTR |
| CGCTCCCATATTTCCAGTTA+TGG | 0.260338 | 7_4:+59904920 | None:intergenic |
| CTATCCCATAACTGGAAATA+TGG | 0.264248 | 7_4:-59904925 | Msa1167430:CDS |
| TTAGGTGTTTGAGGCATATT+AGG | 0.275611 | 7_4:-59902311 | Msa1167430:three_prime_UTR |
| CATATTAGGATTGGATGTTT+TGG | 0.288217 | 7_4:-59902297 | Msa1167430:three_prime_UTR |
| CTTTATATGACAGGCATGTT+TGG | 0.291541 | 7_4:-59905088 | Msa1167430:intron |
| GGTGATCACAAGCTTCAAAT+TGG | 0.296127 | 7_4:-59905012 | Msa1167430:CDS |
| AACACCTGTACTTGTGAAAA+AGG | 0.297237 | 7_4:-59903366 | Msa1167430:CDS |
| TTTGGAGTCTCCTGCTTCTC+TGG | 0.303491 | 7_4:+59902723 | None:intergenic |
| TTTATATGACAGGCATGTTT+GGG | 0.313274 | 7_4:-59905087 | Msa1167430:intron |
| TGCCTTAGGTTCTCATAATA+AGG | 0.315168 | 7_4:-59902555 | Msa1167430:CDS |
| TATGGGAGCGTCTTCCTTGC+TGG | 0.325658 | 7_4:-59904907 | Msa1167430:CDS |
| CAACTCCAATCACCTGTTAC+AGG | 0.338113 | 7_4:+59902674 | None:intergenic |
| CCTTCACTTGGCACTGTGCT+TGG | 0.346567 | 7_4:+59902532 | None:intergenic |
| AGTTGTTGATTTAGGAAAAC+TGG | 0.354420 | 7_4:-59902439 | Msa1167430:three_prime_UTR |
| TCTTGATCTTCTTTGGATCT+GGG | 0.356960 | 7_4:-59902477 | Msa1167430:three_prime_UTR |
| GGGGAGGTCAGCAAGGATAA+AGG | 0.362925 | 7_4:-59905066 | Msa1167430:CDS |
| AATTTGAGCTATCCCATAAC+TGG | 0.378730 | 7_4:-59904933 | Msa1167430:CDS |
| TGATGCATTTACACCGGGTT+TGG | 0.381330 | 7_4:+59904486 | None:intergenic |
| GCAGATTTACCAGCCTGCTT+AGG | 0.386812 | 7_4:+59902762 | None:intergenic |
| TAGTCTCCAGTTACCTTCTT+CGG | 0.386819 | 7_4:+59903486 | None:intergenic |
| GCTCCCATATTTCCAGTTAT+GGG | 0.386902 | 7_4:+59904921 | None:intergenic |
| CTGGCGGTTTAGTTATGGTT+AGG | 0.396289 | 7_4:-59902329 | Msa1167430:three_prime_UTR |
| GTTTAGAGTATTATTAAACT+TGG | 0.409371 | 7_4:-59902402 | Msa1167430:three_prime_UTR |
| ACAGCTGCAATCCCTGTAAC+AGG | 0.418416 | 7_4:-59902686 | Msa1167430:intron |
| TAGTTATGGTTAGGTGTTTG+AGG | 0.418924 | 7_4:-59902320 | Msa1167430:three_prime_UTR |
| AAGAACTAACCAGTCTTCTC+TGG | 0.427252 | 7_4:+59903329 | None:intergenic |
| TGTTACTGGCGGTTTAGTTA+TGG | 0.429442 | 7_4:-59902334 | Msa1167430:three_prime_UTR |
| TTTAAGACTGAAGATGCCTT+AGG | 0.434410 | 7_4:-59902569 | Msa1167430:CDS |
| TAACAAGCAGCCAGAGAAGC+AGG | 0.434559 | 7_4:-59902733 | Msa1167430:CDS |
| CAGATTTACCAGCCTGCTTA+GGG | 0.438934 | 7_4:+59902763 | None:intergenic |
| GCATTTACACCGGGTTTGGC+AGG | 0.449487 | 7_4:+59904490 | None:intergenic |
| CACAAGTACAGGTGTTTCCT+TGG | 0.449840 | 7_4:+59903373 | None:intergenic |
| TGTTTGAGGCATATTAGGAT+TGG | 0.452721 | 7_4:-59902306 | Msa1167430:three_prime_UTR |
| AACTTCACATACAGGGATAC+CGG | 0.456270 | 7_4:+59905036 | None:intergenic |
| TTACCAGCCTGCTTAGGGTA+AGG | 0.466162 | 7_4:+59902768 | None:intergenic |
| CTTGATCTTCTTTGGATCTG+GGG | 0.466662 | 7_4:-59902476 | Msa1167430:three_prime_UTR |
| GAAGATATTATACTTGCTAA+TGG | 0.476177 | 7_4:-59904604 | Msa1167430:intron |
| GGGAGGTCAGCAAGGATAAA+GGG | 0.482905 | 7_4:-59905065 | Msa1167430:CDS |
| GCACTCTCTCTCTGCAGTCA+TGG | 0.496600 | 7_4:-59906698 | Msa1167430:exon |
| TATCCCATAACTGGAAATAT+GGG | 0.497848 | 7_4:-59904924 | Msa1167430:CDS |
| GATCACCAAACTTCACATAC+AGG | 0.505258 | 7_4:+59905028 | None:intergenic |
| CTGTAATCTCCACTAGACTT+TGG | 0.505848 | 7_4:+59902705 | None:intergenic |
| CCGATGAAATGTGGATAAGC+TGG | 0.506704 | 7_4:+59905195 | None:intergenic |
| GTATCCCTGTATGTGAAGTT+TGG | 0.511130 | 7_4:-59905033 | Msa1167430:CDS |
| TAGTGTCCCTTACCCTAAGC+AGG | 0.513510 | 7_4:-59902775 | Msa1167430:CDS |
| GGCCTTATTATGAGAACCTA+AGG | 0.516695 | 7_4:+59902553 | None:intergenic |
| GATTCATCTGATGCTAGTAC+TGG | 0.522501 | 7_4:-59904418 | Msa1167430:CDS |
| TTTGTTACTCCAGAGAAGAC+TGG | 0.525269 | 7_4:-59903338 | Msa1167430:intron |
| GTCCCTTACCCTAAGCAGGC+TGG | 0.535334 | 7_4:-59902771 | Msa1167430:CDS |
| AATCAGAAGGATGCTAGTAC+TGG | 0.537632 | 7_4:-59904451 | Msa1167430:CDS |
| TTAAGATCAAATTCTGACGT+TGG | 0.541262 | 7_4:-59902370 | Msa1167430:three_prime_UTR |
| TTATTTGAACGAAATTCGAA+TGG | 0.547131 | 7_4:+59906789 | None:intergenic |
| TACCAGCCTGCTTAGGGTAA+GGG | 0.548023 | 7_4:+59902769 | None:intergenic |
| AGCTAACAAAACCCTTCACT+TGG | 0.555690 | 7_4:+59902520 | None:intergenic |
| CCAAGCACAGTGCCAAGTGA+AGG | 0.555760 | 7_4:-59902532 | Msa1167430:exon |
| GTCGTTTAGCCCATGGCGAA+TGG | 0.558159 | 7_4:-59903564 | Msa1167430:intron |
| TTTAGATACTGATTCTGAAG+AGG | 0.569513 | 7_4:-59904626 | Msa1167430:intron |
| CTGAAGGGAGCAACAAGAGG+AGG | 0.570018 | 7_4:-59903409 | Msa1167430:CDS |
| CCAGCTTATCCACATTTCAT+CGG | 0.582062 | 7_4:-59905195 | Msa1167430:intron |
| ATCTGATGCTAGTGAAGATG+AGG | 0.588334 | 7_4:-59904380 | Msa1167430:intron |
| GTAGGGAAACCTGCCAAACC+CGG | 0.592566 | 7_4:-59904499 | Msa1167430:intron |
| TGACAAGGAGACTCCGAAGA+AGG | 0.592738 | 7_4:-59903499 | Msa1167430:intron |
| CAGGAGACTCCAAAGTCTAG+TGG | 0.603055 | 7_4:-59902714 | Msa1167430:CDS |
| CAAGCACAGTGCCAAGTGAA+GGG | 0.609527 | 7_4:-59902531 | Msa1167430:exon |
| AACTCCAATCACCTGTTACA+GGG | 0.611246 | 7_4:+59902675 | None:intergenic |
| GAGGGATGCTGAATCTTCCA+AGG | 0.612820 | 7_4:-59903390 | Msa1167430:CDS |
| TGAAGGGAGCAACAAGAGGA+GGG | 0.614862 | 7_4:-59903408 | Msa1167430:CDS |
| AGACTGAAGGGAGCAACAAG+AGG | 0.615166 | 7_4:-59903412 | Msa1167430:CDS |
| AAGCATATACCGATGAAATG+TGG | 0.617686 | 7_4:+59905186 | None:intergenic |
| ACTTCACATACAGGGATACC+GGG | 0.620641 | 7_4:+59905037 | None:intergenic |
| TTAGGTGTCGAGGTAAAACA+TGG | 0.629801 | 7_4:-59905248 | Msa1167430:intron |
| AAAACATGGTGAACCACACA+AGG | 0.630125 | 7_4:-59905234 | Msa1167430:CDS |
| TATATGACAGGCATGTTTGG+GGG | 0.631765 | 7_4:-59905085 | Msa1167430:intron |
| TTATATGACAGGCATGTTTG+GGG | 0.632570 | 7_4:-59905086 | Msa1167430:intron |
| ATCACCAAACTTCACATACA+GGG | 0.632725 | 7_4:+59905029 | None:intergenic |
| CAAGGATAAAGGGAGTGACC+CGG | 0.634157 | 7_4:-59905055 | Msa1167430:CDS |
| AAGCGATGAAGATTCTGACA+AGG | 0.637276 | 7_4:-59903514 | Msa1167430:CDS |
| ACCAAATCAAAAGATGTCTG+AGG | 0.650289 | 7_4:+59904967 | None:intergenic |
| TTATGGTCACGTGTTACTGG+CGG | 0.671148 | 7_4:-59902345 | Msa1167430:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTAAAATATTTAAT+TGG | + | chr7_4:59905330-59905349 | None:intergenic | 0.0% |
| !!! | TTTTTTTGAAAGAAATTTTT+TGG | + | chr7_4:59904939-59904958 | None:intergenic | 10.0% |
| !!! | AATTTTAAATTTTAAGATTC+CGG | - | chr7_4:59906791-59906810 | Msa1167430:five_prime_UTR | 10.0% |
| !!! | TGTTTTTGTTTTTTTCAAAA+AGG | + | chr7_4:59902479-59902498 | None:intergenic | 15.0% |
| !! | ATGAAAAACTAAATAACAAA+TGG | + | chr7_4:59903513-59903532 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAGTTTTTCATT+TGG | - | chr7_4:59903514-59903533 | Msa1167430:CDS | 15.0% |
| !!! | TAATAATATGGTTTTTAAGA+TGG | - | chr7_4:59903669-59903688 | Msa1167430:intron | 15.0% |
| !!! | AATAATATGGTTTTTAAGAT+GGG | - | chr7_4:59903670-59903689 | Msa1167430:intron | 15.0% |
| !! | CAGTATAAAATAGTATTAAA+AGG | + | chr7_4:59904209-59904228 | None:intergenic | 15.0% |
| !!! | ATTGTTCTAAATATTTATGT+AGG | - | chr7_4:59904542-59904561 | Msa1167430:intron | 15.0% |
| !!! | TTGTTCTAAATATTTATGTA+GGG | - | chr7_4:59904543-59904562 | Msa1167430:intron | 15.0% |
| !!! | TTTCAATATATAATGGATAT+TGG | - | chr7_4:59904726-59904745 | Msa1167430:intron | 15.0% |
| !! | TTAATTTAATGATTGAATCA+GGG | - | chr7_4:59905353-59905372 | Msa1167430:intron | 15.0% |
| !! | ACTCATATTAAATTCAAATT+CGG | + | chr7_4:59905619-59905638 | None:intergenic | 15.0% |
| !! | AAAAATGTAAAGTGATAGAA+AGG | + | chr7_4:59902414-59902433 | None:intergenic | 20.0% |
| !! | TTTCATGTATAAATATCGTT+AGG | - | chr7_4:59902542-59902561 | Msa1167430:CDS | 20.0% |
| !! | ATACATGCTTAAACAAAATT+AGG | + | chr7_4:59902747-59902766 | None:intergenic | 20.0% |
| !! | AAACTAAATAACAAATGGTA+GGG | + | chr7_4:59903508-59903527 | None:intergenic | 20.0% |
| !! | AAAACTAAATAACAAATGGT+AGG | + | chr7_4:59903509-59903528 | None:intergenic | 20.0% |
| !! | ATTTGGTCAATTTACAAAAA+AGG | - | chr7_4:59903531-59903550 | Msa1167430:CDS | 20.0% |
| !!! | CGTTAATGTTTTTGTATAAA+TGG | - | chr7_4:59903940-59903959 | Msa1167430:intron | 20.0% |
| !!! | TTATTAGATTGCATTTTTGT+CGG | + | chr7_4:59904256-59904275 | None:intergenic | 20.0% |
| !! | AAGATTAAAGAATGTAGTTA+AGG | + | chr7_4:59904299-59904318 | None:intergenic | 20.0% |
| !!! | AAGTGGATTTCAATATATAA+TGG | - | chr7_4:59904719-59904738 | Msa1167430:intron | 20.0% |
| !! | TTGAATTAAATGAAATGCTA+TGG | - | chr7_4:59904839-59904858 | Msa1167430:intron | 20.0% |
| !! | TATGGAAAAATACAAATGTA+GGG | - | chr7_4:59904857-59904876 | Msa1167430:intron | 20.0% |
| !! | ATGTTTGTACCAAAAATTAA+TGG | - | chr7_4:59904961-59904980 | Msa1167430:CDS | 20.0% |
| !! | TAAAGGAAATCAAAACAATT+TGG | + | chr7_4:59905164-59905183 | None:intergenic | 20.0% |
| !! | GTTAATTTAATGATTGAATC+AGG | - | chr7_4:59905352-59905371 | Msa1167430:intron | 20.0% |
| !! | TAATTTAATGATTGAATCAG+GGG | - | chr7_4:59905354-59905373 | Msa1167430:intron | 20.0% |
| !! | TCAATAAAAAATTCAGTACT+CGG | + | chr7_4:59905431-59905450 | None:intergenic | 20.0% |
| !!! | AGTACTGAATTTTTTATTGA+AGG | - | chr7_4:59905431-59905450 | Msa1167430:intron | 20.0% |
| !!! | ATTCATCTTTTAGTTTGTTT+TGG | - | chr7_4:59905466-59905485 | Msa1167430:intron | 20.0% |
| !!! | GTTTAGAGTATTATTAAACT+TGG | - | chr7_4:59906657-59906676 | Msa1167430:intron | 20.0% |
| !! | AAATTCGAATGGATCTTTTT+GGG | + | chr7_4:59902262-59902281 | None:intergenic | 25.0% |
| ! | TTATTTGAACGAAATTCGAA+TGG | + | chr7_4:59902273-59902292 | None:intergenic | 25.0% |
| !!! | TTGCAGTTTTTGGATAAAAA+TGG | - | chr7_4:59902567-59902586 | Msa1167430:CDS | 25.0% |
| !!! | TACACAACATTGATTTAAAC+AGG | + | chr7_4:59902779-59902798 | None:intergenic | 25.0% |
| ! | TACAGATTATTGTCAAATAG+CGG | + | chr7_4:59902861-59902880 | None:intergenic | 25.0% |
| !! | TGTTTCTATTGGAAAAAATG+TGG | - | chr7_4:59903043-59903062 | Msa1167430:intron | 25.0% |
| ! | AATGTGGTAGATTATCTTAT+TGG | - | chr7_4:59903059-59903078 | Msa1167430:intron | 25.0% |
| !! | ATCAACTATTCTCAGTTTTA+TGG | + | chr7_4:59903164-59903183 | None:intergenic | 25.0% |
| ! | AACTAAATAACAAATGGTAG+GGG | + | chr7_4:59903507-59903526 | None:intergenic | 25.0% |
| ! | CAATGTAATAGAAACTAAAG+AGG | + | chr7_4:59903612-59903631 | None:intergenic | 25.0% |
| ! | ATATAAAACTCCTTTCATGT+GGG | + | chr7_4:59903638-59903657 | None:intergenic | 25.0% |
| ! | AGGATAAAAAAATCCAAAGA+AGG | + | chr7_4:59903744-59903763 | None:intergenic | 25.0% |
| ! | TCCTGTTGCTAAATTAATAT+TGG | - | chr7_4:59903760-59903779 | Msa1167430:intron | 25.0% |
| ! | TCCAATATTAATTTAGCAAC+AGG | + | chr7_4:59903764-59903783 | None:intergenic | 25.0% |
| ! | CAAAAACATTAACGATTCAA+TGG | + | chr7_4:59903934-59903953 | None:intergenic | 25.0% |
| !!! | ACATCTTTTGATTTGGTTTT+TGG | - | chr7_4:59904098-59904117 | Msa1167430:intron | 25.0% |
| !!! | CATCTTTTGATTTGGTTTTT+GGG | - | chr7_4:59904099-59904118 | Msa1167430:intron | 25.0% |
| !! | ATTTTTAATCGAATGTGAAC+AGG | - | chr7_4:59904175-59904194 | Msa1167430:intron | 25.0% |
| ! | TTTACTGATGAATATTCTGA+TGG | - | chr7_4:59904318-59904337 | Msa1167430:intron | 25.0% |
| !! | GAAGATATTATACTTGCTAA+TGG | - | chr7_4:59904455-59904474 | Msa1167430:CDS | 25.0% |
| !! | TATTTAGAACAATATGACAC+AGG | + | chr7_4:59904535-59904554 | None:intergenic | 25.0% |
| ! | AAAACAGAAAAAGAATCAGA+AGG | - | chr7_4:59904595-59904614 | Msa1167430:intron | 25.0% |
| ! | TAACTGTATAATCTAGAAAG+TGG | - | chr7_4:59904702-59904721 | Msa1167430:intron | 25.0% |
| !!! | CATCGAACAATTTTGTTTAT+CGG | + | chr7_4:59904795-59904814 | None:intergenic | 25.0% |
| ! | CTATGGAAAAATACAAATGT+AGG | - | chr7_4:59904856-59904875 | Msa1167430:intron | 25.0% |
| !! | GTGGTAAAACCATTAATTTT+TGG | + | chr7_4:59904973-59904992 | None:intergenic | 25.0% |
| ! | CTAAAAACTCATTCACATAA+AGG | + | chr7_4:59905181-59905200 | None:intergenic | 25.0% |
| !!! | ATAATCCTGTTTTTCTTGAT+CGG | - | chr7_4:59905270-59905289 | Msa1167430:intron | 25.0% |
| ! | AATTTAATGATTGAATCAGG+GGG | - | chr7_4:59905355-59905374 | Msa1167430:intron | 25.0% |
| ! | TTTAATATACGATGTAGACT+TGG | - | chr7_4:59905400-59905419 | Msa1167430:intron | 25.0% |
| ! | AAACTAACAAACAAAGTACA+GGG | + | chr7_4:59905758-59905777 | None:intergenic | 25.0% |
| ! | AAAACTAACAAACAAAGTAC+AGG | + | chr7_4:59905759-59905778 | None:intergenic | 25.0% |
| ! | GTCATCTAGATAGATTTATA+AGG | - | chr7_4:59905851-59905870 | Msa1167430:intron | 25.0% |
| !! | AGTTTAACTTTATTCAAGTC+CGG | + | chr7_4:59906026-59906045 | None:intergenic | 25.0% |
| ! | AAAATATTTAACACATGGTC+AGG | + | chr7_4:59906050-59906069 | None:intergenic | 25.0% |
| ! | GTCAGAAAATATTTAACACA+TGG | + | chr7_4:59906055-59906074 | None:intergenic | 25.0% |
| !! | ACGAGAATTATGATATTTTC+AGG | - | chr7_4:59906252-59906271 | Msa1167430:intron | 25.0% |
| !!! | AGAATTATGATATTTTCAGG+TGG | - | chr7_4:59906255-59906274 | Msa1167430:intron | 25.0% |
| !! | AGTTGTCTTTTTATATCTGT+TGG | - | chr7_4:59906403-59906422 | Msa1167430:intron | 25.0% |
| !! | AAATCAACAACTGTATTTTC+AGG | + | chr7_4:59906612-59906631 | None:intergenic | 25.0% |
| !!! | GAAAATACAGTTGTTGATTT+AGG | - | chr7_4:59906612-59906631 | Msa1167430:intron | 25.0% |
| ! | GAAATTCGAATGGATCTTTT+TGG | + | chr7_4:59902263-59902282 | None:intergenic | 30.0% |
| AATGTAAAGTGATAGAAAGG+AGG | + | chr7_4:59902411-59902430 | None:intergenic | 30.0% | |
| AGAATCGCATATAAAACGAT+AGG | - | chr7_4:59902515-59902534 | Msa1167430:three_prime_UTR | 30.0% | |
| !! | CAGTTTTTGGATAAAAATGG+TGG | - | chr7_4:59902570-59902589 | Msa1167430:CDS | 30.0% |
| ! | TAAAAATGGTGGAAATGTGA+TGG | - | chr7_4:59902581-59902600 | Msa1167430:intron | 30.0% |
| TTGTTAAATAGCAACTACAG+CGG | + | chr7_4:59902942-59902961 | None:intergenic | 30.0% | |
| AACAAAACAAAAAAACGTCG+AGG | + | chr7_4:59903001-59903020 | None:intergenic | 30.0% | |
| ! | TTTTTCCAATAGAAACATCG+AGG | + | chr7_4:59903040-59903059 | None:intergenic | 30.0% |
| GTTCATTTCAGAGATTAGAT+TGG | + | chr7_4:59903109-59903128 | None:intergenic | 30.0% | |
| !!! | TGGGAGTTTTATTACACTTT+CGG | - | chr7_4:59903243-59903262 | Msa1167430:intron | 30.0% |
| CATTGTCTTAGACCAATAAA+AGG | - | chr7_4:59903270-59903289 | Msa1167430:intron | 30.0% | |
| GTTACAAAATCAGAGACATA+AGG | + | chr7_4:59903345-59903364 | None:intergenic | 30.0% | |
| !! | GTTAGTTCTGTTATAGAACT+CGG | - | chr7_4:59903423-59903442 | Msa1167430:intron | 30.0% |
| ! | TTTAGAGTAAGTGAACTAAC+TGG | + | chr7_4:59903476-59903495 | None:intergenic | 30.0% |
| TATAAAACTCCTTTCATGTG+GGG | + | chr7_4:59903637-59903656 | None:intergenic | 30.0% | |
| GATATAAAACTCCTTTCATG+TGG | + | chr7_4:59903639-59903658 | None:intergenic | 30.0% | |
| !! | TGAAAGGAGTTTTATATCAC+TGG | - | chr7_4:59903641-59903660 | Msa1167430:intron | 30.0% |
| !! | GAAAGGAGTTTTATATCACT+GGG | - | chr7_4:59903642-59903661 | Msa1167430:intron | 30.0% |
| TCACTGGGTTGTTAATAATA+TGG | - | chr7_4:59903657-59903676 | Msa1167430:intron | 30.0% | |
| CAATATTGTGTTTCCTTCTT+TGG | - | chr7_4:59903728-59903747 | Msa1167430:intron | 30.0% | |
| ! | TCACAAATCACAATCCTTTT+AGG | - | chr7_4:59903793-59903812 | Msa1167430:intron | 30.0% |
| GTCTCAAATCTTTATATGAC+AGG | - | chr7_4:59903962-59903981 | Msa1167430:intron | 30.0% | |
| TTTATATGACAGGCATGTTT+GGG | - | chr7_4:59903972-59903991 | Msa1167430:intron | 30.0% | |
| !!! | TTTTGATTTGGTTTTTGGGA+AGG | - | chr7_4:59904103-59904122 | Msa1167430:intron | 30.0% |
| TATCCCATAACTGGAAATAT+GGG | - | chr7_4:59904135-59904154 | Msa1167430:intron | 30.0% | |
| ATTCGATTAAAAATCCAGCA+AGG | + | chr7_4:59904169-59904188 | None:intergenic | 30.0% | |
| !! | TTTAGATACTGATTCTGAAG+AGG | - | chr7_4:59904433-59904452 | Msa1167430:CDS | 30.0% |
| GACAATAGAAATGCATAAGA+TGG | + | chr7_4:59904498-59904517 | None:intergenic | 30.0% | |
| CGATAAACAAAATTGTTCGA+TGG | - | chr7_4:59904793-59904812 | Msa1167430:intron | 30.0% | |
| TTTAATTCAATAACAGCAGC+TGG | + | chr7_4:59904829-59904848 | None:intergenic | 30.0% | |
| AATACTAATTGGGTAGAAGA+AGG | - | chr7_4:59904887-59904906 | Msa1167430:intron | 30.0% | |
| ACTTACAAAATAGATGAAGC+TGG | - | chr7_4:59905054-59905073 | Msa1167430:CDS | 30.0% | |
| !! | AAACACCTTCACTTTTAAGT+GGG | + | chr7_4:59905126-59905145 | None:intergenic | 30.0% |
| !! | AAAACACCTTCACTTTTAAG+TGG | + | chr7_4:59905127-59905146 | None:intergenic | 30.0% |
| TCAAGAAAAACAGGATTATG+AGG | + | chr7_4:59905269-59905288 | None:intergenic | 30.0% | |
| GATAAGAGTTATCAACTATG+TGG | - | chr7_4:59905303-59905322 | Msa1167430:intron | 30.0% | |
| !!! | TGAGTTTTGTTTTAGACTGA+AGG | - | chr7_4:59905634-59905653 | Msa1167430:intron | 30.0% |
| !!! | GAGTTTTGTTTTAGACTGAA+GGG | - | chr7_4:59905635-59905654 | Msa1167430:intron | 30.0% |
| AACTAACAAACAAAGTACAG+GGG | + | chr7_4:59905757-59905776 | None:intergenic | 30.0% | |
| TTATGCAATAACAGTGCAAA+GGG | + | chr7_4:59905898-59905917 | None:intergenic | 30.0% | |
| TTTATGCAATAACAGTGCAA+AGG | + | chr7_4:59905899-59905918 | None:intergenic | 30.0% | |
| TGCATAAAATTGCATTGTTG+TGG | - | chr7_4:59905911-59905930 | Msa1167430:intron | 30.0% | |
| ! | TTAGTCGCAATTTTGTCTTT+TGG | - | chr7_4:59906087-59906106 | Msa1167430:intron | 30.0% |
| ATTAACAAAGCAGAACTGAA+AGG | - | chr7_4:59906224-59906243 | Msa1167430:intron | 30.0% | |
| !!! | GCAATTTTTATTTTGACTGC+AGG | - | chr7_4:59906464-59906483 | Msa1167430:intron | 30.0% |
| !! | AGTTGTTGATTTAGGAAAAC+TGG | - | chr7_4:59906620-59906639 | Msa1167430:intron | 30.0% |
| TTAAGATCAAATTCTGACGT+TGG | - | chr7_4:59906689-59906708 | Msa1167430:exon | 30.0% | |
| !!! | AAATTCTGACGTTGGTTTTA+TGG | - | chr7_4:59906697-59906716 | Msa1167430:exon | 30.0% |
| ! | CATATTAGGATTGGATGTTT+TGG | - | chr7_4:59906762-59906781 | Msa1167430:five_prime_UTR | 30.0% |
| ! | TCCTATTCAATTTTTGCTTC+TGG | + | chr7_4:59906817-59906836 | None:intergenic | 30.0% |
| !! | TCTTTTTGGGCTTAGTTGAA+TGG | + | chr7_4:59902249-59902268 | None:intergenic | 35.0% |
| TGATAGAAAGGAGGAAGAAA+CGG | + | chr7_4:59902402-59902421 | None:intergenic | 35.0% | |
| ! | TCGTTAGGTTTTGCAGTTTT+TGG | - | chr7_4:59902557-59902576 | Msa1167430:CDS | 35.0% |
| CGTGAGGATGATGATAATTA+GGG | + | chr7_4:59902640-59902659 | None:intergenic | 35.0% | |
| TCGTGAGGATGATGATAATT+AGG | + | chr7_4:59902641-59902660 | None:intergenic | 35.0% | |
| CTAAAGCACAAAAAGTTCTG+TGG | + | chr7_4:59902669-59902688 | None:intergenic | 35.0% | |
| ! | CACAGAACTTTTTGTGCTTT+AGG | - | chr7_4:59902667-59902686 | Msa1167430:intron | 35.0% |
| TGTTGTGTAATTGCAGTTAG+TGG | - | chr7_4:59902790-59902809 | Msa1167430:intron | 35.0% | |
| TGGATTGTTAAAATTCCGCT+AGG | - | chr7_4:59902810-59902829 | Msa1167430:intron | 35.0% | |
| ! | AAAGACCTCGATGTTTCTAT+TGG | - | chr7_4:59903032-59903051 | Msa1167430:intron | 35.0% |
| !!! | GGGAGTTTTATTACACTTTC+GGG | - | chr7_4:59903244-59903263 | Msa1167430:intron | 35.0% |
| !!! | GGAGTTTTATTACACTTTCG+GGG | - | chr7_4:59903245-59903264 | Msa1167430:intron | 35.0% |
| TTAGACCAATAAAAGGTCAC+TGG | - | chr7_4:59903277-59903296 | Msa1167430:intron | 35.0% | |
| ! | TTCAACCAGTGACCTTTTAT+TGG | + | chr7_4:59903285-59903304 | None:intergenic | 35.0% |
| AAAAGACAGAAAGTGAAGTG+CGG | + | chr7_4:59903585-59903604 | None:intergenic | 35.0% | |
| !! | TGGATAAGCTGGTTATTTTC+TGG | + | chr7_4:59903856-59903875 | None:intergenic | 35.0% |
| AAGCATATACCGATGAAATG+TGG | + | chr7_4:59903876-59903895 | None:intergenic | 35.0% | |
| CTTTATATGACAGGCATGTT+TGG | - | chr7_4:59903971-59903990 | Msa1167430:intron | 35.0% | |
| TTATATGACAGGCATGTTTG+GGG | - | chr7_4:59903973-59903992 | Msa1167430:intron | 35.0% | |
| ATCACCAAACTTCACATACA+GGG | + | chr7_4:59904033-59904052 | None:intergenic | 35.0% | |
| !! | TCCTCAGACATCTTTTGATT+TGG | - | chr7_4:59904091-59904110 | Msa1167430:intron | 35.0% |
| ACCAAATCAAAAGATGTCTG+AGG | + | chr7_4:59904095-59904114 | None:intergenic | 35.0% | |
| AATTTGAGCTATCCCATAAC+TGG | - | chr7_4:59904126-59904145 | Msa1167430:intron | 35.0% | |
| CTATCCCATAACTGGAAATA+TGG | - | chr7_4:59904134-59904153 | Msa1167430:intron | 35.0% | |
| !!! | TGTTTTGATGCATTTACACC+GGG | + | chr7_4:59904581-59904600 | None:intergenic | 35.0% |
| !!! | CTGTTTTGATGCATTTACAC+CGG | + | chr7_4:59904582-59904601 | None:intergenic | 35.0% |
| ! | TATCGGCACAACATCTATTT+TGG | + | chr7_4:59904778-59904797 | None:intergenic | 35.0% |
| AAAATACAAATGTAGGGCAC+TGG | - | chr7_4:59904863-59904882 | Msa1167430:intron | 35.0% | |
| TGCTCTCATATATCTAACAG+TGG | + | chr7_4:59904992-59905011 | None:intergenic | 35.0% | |
| ! | AAAGCATTCCTGAGATGATT+CGG | - | chr7_4:59905022-59905041 | Msa1167430:CDS | 35.0% |
| ACAAAATAGATGAAGCTGGT+CGG | - | chr7_4:59905058-59905077 | Msa1167430:CDS | 35.0% | |
| ACATTCCCACTTAAAAGTGA+AGG | - | chr7_4:59905118-59905137 | Msa1167430:intron | 35.0% | |
| ACAGGATTATGAGGACAATT+TGG | + | chr7_4:59905260-59905279 | None:intergenic | 35.0% | |
| !!! | TTATTTTGACCATTCGCCAT+GGG | + | chr7_4:59905507-59905526 | None:intergenic | 35.0% |
| !!! | TTTATTTTGACCATTCGCCA+TGG | + | chr7_4:59905508-59905527 | None:intergenic | 35.0% |
| AACACCTGTACTTGTGAAAA+AGG | - | chr7_4:59905693-59905712 | Msa1167430:intron | 35.0% | |
| !! | TTTGCCTTTTTCACAAGTAC+AGG | + | chr7_4:59905700-59905719 | None:intergenic | 35.0% |
| TTAGTGTCAAACAAGGCTTA+GGG | + | chr7_4:59905812-59905831 | None:intergenic | 35.0% | |
| ATTAGTGTCAAACAAGGCTT+AGG | + | chr7_4:59905813-59905832 | None:intergenic | 35.0% | |
| CACAACATTAGTGTCAAACA+AGG | + | chr7_4:59905819-59905838 | None:intergenic | 35.0% | |
| AACTACTTTGTGACTTATGC+CGG | - | chr7_4:59906004-59906023 | Msa1167430:intron | 35.0% | |
| !!! | TTATGATATTTTCAGGTGGC+AGG | - | chr7_4:59906259-59906278 | Msa1167430:intron | 35.0% |
| TAAGTGTGTAAAGAACGATG+AGG | + | chr7_4:59906435-59906454 | None:intergenic | 35.0% | |
| ! | TTTAAGACTGAAGATGCCTT+AGG | - | chr7_4:59906490-59906509 | Msa1167430:intron | 35.0% |
| TGCCTTAGGTTCTCATAATA+AGG | - | chr7_4:59906504-59906523 | Msa1167430:intron | 35.0% | |
| GTTAGCATCTTGATCTTCTT+TGG | - | chr7_4:59906575-59906594 | Msa1167430:intron | 35.0% | |
| ATCTTGATCTTCTTTGGATC+TGG | - | chr7_4:59906581-59906600 | Msa1167430:intron | 35.0% | |
| TCTTGATCTTCTTTGGATCT+GGG | - | chr7_4:59906582-59906601 | Msa1167430:intron | 35.0% | |
| TAGTTATGGTTAGGTGTTTG+AGG | - | chr7_4:59906739-59906758 | Msa1167430:five_prime_UTR | 35.0% | |
| ! | TTAGGTGTTTGAGGCATATT+AGG | - | chr7_4:59906748-59906767 | Msa1167430:five_prime_UTR | 35.0% |
| ! | TGTTTGAGGCATATTAGGAT+TGG | - | chr7_4:59906753-59906772 | Msa1167430:five_prime_UTR | 35.0% |
| ! | ATTCAATTTTTGCTTCTGGC+CGG | + | chr7_4:59906813-59906832 | None:intergenic | 35.0% |
| GCCAGAAGCAAAAATTGAAT+AGG | - | chr7_4:59906813-59906832 | Msa1167430:five_prime_UTR | 35.0% | |
| !! | CTTTTTGTGCTTTAGGTCAC+TGG | - | chr7_4:59902674-59902693 | Msa1167430:intron | 40.0% |
| TTGTCAAATAGCGGCTATAC+TGG | + | chr7_4:59902852-59902871 | None:intergenic | 40.0% | |
| AGTGAATCGCAGAGTAATAG+TGG | - | chr7_4:59902890-59902909 | Msa1167430:intron | 40.0% | |
| AGTCCAAATTCCGCTATGAT+AGG | - | chr7_4:59902915-59902934 | Msa1167430:intron | 40.0% | |
| GTCCAAATTCCGCTATGATA+GGG | - | chr7_4:59902916-59902935 | Msa1167430:intron | 40.0% | |
| AGTTCCTACAATCATCTCGA+AGG | - | chr7_4:59903213-59903232 | Msa1167430:intron | 40.0% | |
| GTTCCTACAATCATCTCGAA+GGG | - | chr7_4:59903214-59903233 | Msa1167430:intron | 40.0% | |
| ATCATCTCGAAGGGACTAAA+TGG | - | chr7_4:59903223-59903242 | Msa1167430:intron | 40.0% | |
| TCATCTCGAAGGGACTAAAT+GGG | - | chr7_4:59903224-59903243 | Msa1167430:intron | 40.0% | |
| GAGACATAAGGATCGAATAG+AGG | + | chr7_4:59903333-59903352 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTGAAGTAGCCAAT+TGG | - | chr7_4:59903442-59903461 | Msa1167430:intron | 40.0% |
| TACATTGTACCCCACATGAA+AGG | - | chr7_4:59903625-59903644 | Msa1167430:intron | 40.0% | |
| ! | GTTTTACCTCGACACCTAAA+AGG | + | chr7_4:59903810-59903829 | None:intergenic | 40.0% |
| !! | TTAGGTGTCGAGGTAAAACA+TGG | - | chr7_4:59903811-59903830 | Msa1167430:intron | 40.0% |
| AAAACATGGTGAACCACACA+AGG | - | chr7_4:59903825-59903844 | Msa1167430:intron | 40.0% | |
| !!! | TTTTCTGGAACAACCTTGTG+TGG | + | chr7_4:59903841-59903860 | None:intergenic | 40.0% |
| CCAGCTTATCCACATTTCAT+CGG | - | chr7_4:59903864-59903883 | Msa1167430:intron | 40.0% | |
| TATATGACAGGCATGTTTGG+GGG | - | chr7_4:59903974-59903993 | Msa1167430:intron | 40.0% | |
| AACTTCACATACAGGGATAC+CGG | + | chr7_4:59904026-59904045 | None:intergenic | 40.0% | |
| GTATCCCTGTATGTGAAGTT+TGG | - | chr7_4:59904026-59904045 | Msa1167430:intron | 40.0% | |
| GATCACCAAACTTCACATAC+AGG | + | chr7_4:59904034-59904053 | None:intergenic | 40.0% | |
| GGTGATCACAAGCTTCAAAT+TGG | - | chr7_4:59904047-59904066 | Msa1167430:intron | 40.0% | |
| GCTCCCATATTTCCAGTTAT+GGG | + | chr7_4:59904141-59904160 | None:intergenic | 40.0% | |
| AATCAGAAGGATGCTAGTAC+TGG | - | chr7_4:59904608-59904627 | Msa1167430:CDS | 40.0% | |
| GATTCATCTGATGCTAGTAC+TGG | - | chr7_4:59904641-59904660 | Msa1167430:intron | 40.0% | |
| ATCTGATGCTAGTGAAGATG+AGG | - | chr7_4:59904679-59904698 | Msa1167430:intron | 40.0% | |
| !! | AGGGCACTGGTAATACTAAT+TGG | - | chr7_4:59904876-59904895 | Msa1167430:intron | 40.0% |
| !! | GGGCACTGGTAATACTAATT+GGG | - | chr7_4:59904877-59904896 | Msa1167430:intron | 40.0% |
| CTAATTGGGTAGAAGAAGGT+AGG | - | chr7_4:59904891-59904910 | Msa1167430:intron | 40.0% | |
| GTAGAAGAAGGTAGGATACT+TGG | - | chr7_4:59904899-59904918 | Msa1167430:CDS | 40.0% | |
| AAGCATTCCTGAGATGATTC+GGG | - | chr7_4:59905023-59905042 | Msa1167430:CDS | 40.0% | |
| CAAAATAGATGAAGCTGGTC+GGG | - | chr7_4:59905059-59905078 | Msa1167430:CDS | 40.0% | |
| AAAATAGATGAAGCTGGTCG+GGG | - | chr7_4:59905060-59905079 | Msa1167430:CDS | 40.0% | |
| CATGACCGATCAAGAAAAAC+AGG | + | chr7_4:59905278-59905297 | None:intergenic | 40.0% | |
| AAGCGATGAAGATTCTGACA+AGG | - | chr7_4:59905545-59905564 | Msa1167430:intron | 40.0% | |
| TAGTCTCCAGTTACCTTCTT+CGG | + | chr7_4:59905576-59905595 | None:intergenic | 40.0% | |
| TTTGTTACTCCAGAGAAGAC+TGG | - | chr7_4:59905721-59905740 | Msa1167430:intron | 40.0% | |
| AAGAACTAACCAGTCTTCTC+TGG | + | chr7_4:59905733-59905752 | None:intergenic | 40.0% | |
| TAGTGTCAAACAAGGCTTAG+GGG | + | chr7_4:59905811-59905830 | None:intergenic | 40.0% | |
| AAGTGGTGAGAGAACATTGT+GGG | + | chr7_4:59905949-59905968 | None:intergenic | 40.0% | |
| ATGGAGCAGCTATTGCTTTA+TGG | - | chr7_4:59905978-59905997 | Msa1167430:intron | 40.0% | |
| GACTGATTGTTTAACCTCGT+TGG | - | chr7_4:59906173-59906192 | Msa1167430:intron | 40.0% | |
| ACAAATTAACGAGTCCAACG+AGG | + | chr7_4:59906190-59906209 | None:intergenic | 40.0% | |
| CTGTAATCTCCACTAGACTT+TGG | + | chr7_4:59906357-59906376 | None:intergenic | 40.0% | |
| AACTCCAATCACCTGTTACA+GGG | + | chr7_4:59906387-59906406 | None:intergenic | 40.0% | |
| !! | GGCCTTATTATGAGAACCTA+AGG | + | chr7_4:59906509-59906528 | None:intergenic | 40.0% |
| AGCTAACAAAACCCTTCACT+TGG | + | chr7_4:59906542-59906561 | None:intergenic | 40.0% | |
| CTTGATCTTCTTTGGATCTG+GGG | - | chr7_4:59906583-59906602 | Msa1167430:intron | 40.0% | |
| ! | GTTTTATGGTCACGTGTTAC+TGG | - | chr7_4:59906711-59906730 | Msa1167430:five_prime_UTR | 40.0% |
| TGTTACTGGCGGTTTAGTTA+TGG | - | chr7_4:59906725-59906744 | Msa1167430:five_prime_UTR | 40.0% | |
| ! | TCTCTGCAGTCATGGAGTTT+TGG | - | chr7_4:59902369-59902388 | Msa1167430:three_prime_UTR | 45.0% |
| ! | CTCTGCAGTCATGGAGTTTT+GGG | - | chr7_4:59902370-59902389 | Msa1167430:three_prime_UTR | 45.0% |
| ! | TCTGCAGTCATGGAGTTTTG+GGG | - | chr7_4:59902371-59902390 | Msa1167430:three_prime_UTR | 45.0% |
| ! | AGTTCTGTGGAGTTTTCGTG+AGG | + | chr7_4:59902656-59902675 | None:intergenic | 45.0% |
| TCTGTAACACTACAGCCTAG+CGG | + | chr7_4:59902828-59902847 | None:intergenic | 45.0% | |
| AGTCCCTTCGAGATGATTGT+AGG | + | chr7_4:59903220-59903239 | None:intergenic | 45.0% | |
| ! | AAAGGTCACTGGTTGAATCG+CGG | - | chr7_4:59903288-59903307 | Msa1167430:intron | 45.0% |
| TAACTGGCTGTGAGACCAAT+TGG | + | chr7_4:59903460-59903479 | None:intergenic | 45.0% | |
| !! | CACAATCCTTTTAGGTGTCG+AGG | - | chr7_4:59903801-59903820 | Msa1167430:intron | 45.0% |
| CCGATGAAATGTGGATAAGC+TGG | + | chr7_4:59903867-59903886 | None:intergenic | 45.0% | |
| ACTTCACATACAGGGATACC+GGG | + | chr7_4:59904025-59904044 | None:intergenic | 45.0% | |
| CGCTCCCATATTTCCAGTTA+TGG | + | chr7_4:59904142-59904161 | None:intergenic | 45.0% | |
| TGATGCATTTACACCGGGTT+TGG | + | chr7_4:59904576-59904595 | None:intergenic | 45.0% | |
| ATTACCACCCGAATCATCTC+AGG | + | chr7_4:59905033-59905052 | None:intergenic | 45.0% | |
| !! | GTAATGTGTCGTTTAGCCCA+TGG | - | chr7_4:59905488-59905507 | Msa1167430:intron | 45.0% |
| CACAAGTACAGGTGTTTCCT+TGG | + | chr7_4:59905689-59905708 | None:intergenic | 45.0% | |
| AGTGGTGAGAGAACATTGTG+GGG | + | chr7_4:59905948-59905967 | None:intergenic | 45.0% | |
| GAAGTGGTGAGAGAACATTG+TGG | + | chr7_4:59905950-59905969 | None:intergenic | 45.0% | |
| GCAATAGCTGCTCCATGAAT+AGG | + | chr7_4:59905974-59905993 | None:intergenic | 45.0% | |
| CAGATTTACCAGCCTGCTTA+GGG | + | chr7_4:59906299-59906318 | None:intergenic | 45.0% | |
| CAATCCCTGTAACAGGTGAT+TGG | - | chr7_4:59906380-59906399 | Msa1167430:intron | 45.0% | |
| CAACTCCAATCACCTGTTAC+AGG | + | chr7_4:59906388-59906407 | None:intergenic | 45.0% | |
| TGTAAAGAACGATGAGGAGG+AGG | + | chr7_4:59906429-59906448 | None:intergenic | 45.0% | |
| GTGTGTAAAGAACGATGAGG+AGG | + | chr7_4:59906432-59906451 | None:intergenic | 45.0% | |
| ! | TTATGGTCACGTGTTACTGG+CGG | - | chr7_4:59906714-59906733 | Msa1167430:five_prime_UTR | 45.0% |
| CTGGCGGTTTAGTTATGGTT+AGG | - | chr7_4:59906730-59906749 | Msa1167430:five_prime_UTR | 45.0% | |
| ! | GGCCCTATCATAGCGGAATT+TGG | + | chr7_4:59902921-59902940 | None:intergenic | 50.0% |
| GGGAGGTCAGCAAGGATAAA+GGG | - | chr7_4:59903994-59904013 | Msa1167430:intron | 50.0% | |
| CAAGGATAAAGGGAGTGACC+CGG | - | chr7_4:59904004-59904023 | Msa1167430:intron | 50.0% | |
| ! | CATTCCTGAGATGATTCGGG+TGG | - | chr7_4:59905026-59905045 | Msa1167430:CDS | 50.0% |
| AGGGGGCTATTGTGTCTTAG+TGG | - | chr7_4:59905372-59905391 | Msa1167430:intron | 50.0% | |
| TGACAAGGAGACTCCGAAGA+AGG | - | chr7_4:59905560-59905579 | Msa1167430:intron | 50.0% | |
| GAGACTCCGAAGAAGGTAAC+TGG | - | chr7_4:59905567-59905586 | Msa1167430:intron | 50.0% | |
| AGACTGAAGGGAGCAACAAG+AGG | - | chr7_4:59905647-59905666 | Msa1167430:intron | 50.0% | |
| TGAAGGGAGCAACAAGAGGA+GGG | - | chr7_4:59905651-59905670 | Msa1167430:intron | 50.0% | |
| GAGGGATGCTGAATCTTCCA+AGG | - | chr7_4:59905669-59905688 | Msa1167430:intron | 50.0% | |
| CTCACCACTTCGCCTATTCA+TGG | - | chr7_4:59905959-59905978 | Msa1167430:intron | 50.0% | |
| TGCTCCATGAATAGGCGAAG+TGG | + | chr7_4:59905966-59905985 | None:intergenic | 50.0% | |
| TAGTGTCCCTTACCCTAAGC+AGG | - | chr7_4:59906284-59906303 | Msa1167430:intron | 50.0% | |
| TACCAGCCTGCTTAGGGTAA+GGG | + | chr7_4:59906293-59906312 | None:intergenic | 50.0% | |
| TTACCAGCCTGCTTAGGGTA+AGG | + | chr7_4:59906294-59906313 | None:intergenic | 50.0% | |
| GCAGATTTACCAGCCTGCTT+AGG | + | chr7_4:59906300-59906319 | None:intergenic | 50.0% | |
| TAACAAGCAGCCAGAGAAGC+AGG | - | chr7_4:59906326-59906345 | Msa1167430:intron | 50.0% | |
| ! | TTTGGAGTCTCCTGCTTCTC+TGG | + | chr7_4:59906339-59906358 | None:intergenic | 50.0% |
| CAGGAGACTCCAAAGTCTAG+TGG | - | chr7_4:59906345-59906364 | Msa1167430:intron | 50.0% | |
| ACAGCTGCAATCCCTGTAAC+AGG | - | chr7_4:59906373-59906392 | Msa1167430:intron | 50.0% | |
| CAAGCACAGTGCCAAGTGAA+GGG | - | chr7_4:59906528-59906547 | Msa1167430:intron | 50.0% | |
| GCACTCTCTCTCTGCAGTCA+TGG | - | chr7_4:59902361-59902380 | Msa1167430:three_prime_UTR | 55.0% | |
| CTACAGCGGCCCTATCATAG+CGG | + | chr7_4:59902928-59902947 | None:intergenic | 55.0% | |
| ! | CACTGGTTGAATCGCGGAGT+CGG | - | chr7_4:59903294-59903313 | Msa1167430:intron | 55.0% |
| !! | ATCGCGGAGTCGGCTTGTAA+AGG | - | chr7_4:59903304-59903323 | Msa1167430:intron | 55.0% |
| ATGACAGGCATGTTTGGGGG+AGG | - | chr7_4:59903977-59903996 | Msa1167430:intron | 55.0% | |
| ATGTTTGGGGGAGGTCAGCA+AGG | - | chr7_4:59903986-59904005 | Msa1167430:intron | 55.0% | |
| GGGGAGGTCAGCAAGGATAA+AGG | - | chr7_4:59903993-59904012 | Msa1167430:intron | 55.0% | |
| !! | TATGGGAGCGTCTTCCTTGC+TGG | - | chr7_4:59904152-59904171 | Msa1167430:intron | 55.0% |
| GTAGGGAAACCTGCCAAACC+CGG | - | chr7_4:59904560-59904579 | Msa1167430:intron | 55.0% | |
| GCATTTACACCGGGTTTGGC+AGG | + | chr7_4:59904572-59904591 | None:intergenic | 55.0% | |
| GTCGTTTAGCCCATGGCGAA+TGG | - | chr7_4:59905495-59905514 | Msa1167430:intron | 55.0% | |
| CTGAAGGGAGCAACAAGAGG+AGG | - | chr7_4:59905650-59905669 | Msa1167430:intron | 55.0% | |
| CCTTCACTTGGCACTGTGCT+TGG | + | chr7_4:59906530-59906549 | None:intergenic | 55.0% | |
| CCAAGCACAGTGCCAAGTGA+AGG | - | chr7_4:59906527-59906546 | Msa1167430:intron | 55.0% | |
| GTCCCTTACCCTAAGCAGGC+TGG | - | chr7_4:59906288-59906307 | Msa1167430:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 59902239 | 59906842 | 59902239 | ID=Msa1167430;Name=Msa1167430 |
| chr7_4 | mRNA | 59902239 | 59906842 | 59902239 | ID=Msa1167430-mRNA-1;Parent=Msa1167430;Name=Msa1167430-mRNA-1;_AED=0.23;_eAED=0.23;_QI=141|0.87|0.88|1|0.87|0.88|9|296|272 |
| chr7_4 | exon | 59902239 | 59902595 | 59902239 | ID=Msa1167430-mRNA-1:exon:18653;Parent=Msa1167430-mRNA-1 |
| chr7_4 | exon | 59902687 | 59902807 | 59902687 | ID=Msa1167430-mRNA-1:exon:18652;Parent=Msa1167430-mRNA-1 |
| chr7_4 | exon | 59903339 | 59903432 | 59903339 | ID=Msa1167430-mRNA-1:exon:18651;Parent=Msa1167430-mRNA-1 |
| chr7_4 | exon | 59903500 | 59903577 | 59903500 | ID=Msa1167430-mRNA-1:exon:18650;Parent=Msa1167430-mRNA-1 |
| chr7_4 | exon | 59904381 | 59904517 | 59904381 | ID=Msa1167430-mRNA-1:exon:18649;Parent=Msa1167430-mRNA-1 |
| chr7_4 | exon | 59904605 | 59904643 | 59904605 | ID=Msa1167430-mRNA-1:exon:18648;Parent=Msa1167430-mRNA-1 |
| chr7_4 | exon | 59904893 | 59905097 | 59904893 | ID=Msa1167430-mRNA-1:exon:18647;Parent=Msa1167430-mRNA-1 |
| chr7_4 | exon | 59905196 | 59905266 | 59905196 | ID=Msa1167430-mRNA-1:exon:18646;Parent=Msa1167430-mRNA-1 |
| chr7_4 | exon | 59906689 | 59906842 | 59906689 | ID=Msa1167430-mRNA-1:exon:18645;Parent=Msa1167430-mRNA-1 |
| chr7_4 | five_prime_UTR | 59906702 | 59906842 | 59906702 | ID=Msa1167430-mRNA-1:five_prime_utr;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59906689 | 59906701 | 59906689 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59905196 | 59905266 | 59905196 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59904893 | 59905097 | 59904893 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59904605 | 59904643 | 59904605 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59904381 | 59904517 | 59904381 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59903500 | 59903577 | 59903500 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59903339 | 59903432 | 59903339 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59902687 | 59902807 | 59902687 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | CDS | 59902535 | 59902595 | 59902535 | ID=Msa1167430-mRNA-1:cds;Parent=Msa1167430-mRNA-1 |
| chr7_4 | three_prime_UTR | 59902239 | 59902534 | 59902239 | ID=Msa1167430-mRNA-1:three_prime_utr;Parent=Msa1167430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
