Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090640 | RHN48623.1 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 5.41e-129 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090640 | sp|Q6V9I6|HDT1_SOLCH | 42.403 | 283 | 135 | 8 | 1 | 271 | 1 | 267 | 2.64e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090640 | A0A396H772 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 2.58e-129 | 377 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1090640 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0705980 | Msa1090640 | 0.800892 | 1.164306e-48 | -8.615850e-47 |
| Msa0166380 | Msa1090640 | 0.816857 | 4.453657e-52 | -8.615850e-47 |
| Msa0454530 | Msa1090640 | 0.812350 | 4.432226e-51 | -8.615850e-47 |
| Msa1080030 | Msa1090640 | 0.949171 | 2.179233e-107 | -8.615850e-47 |
| Msa1090640 | Msa1167430 | 0.982108 | 2.990949e-154 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090640 | MtrunA17_Chr7g0265761 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 4.98e-133 | 377 |
| Msa1090640 | MtrunA17_Chr2g0320884 | 40.864 | 301 | 143 | 8 | 1 | 272 | 35 | 329 | 2.36e-42 | 147 |
| Msa1090640 | MtrunA17_Chr4g0027181 | 38.075 | 239 | 134 | 7 | 1 | 230 | 5 | 238 | 6.69e-28 | 108 |
| Msa1090640 | MtrunA17_Chr4g0027191 | 50.000 | 96 | 42 | 2 | 2 | 93 | 6 | 99 | 1.03e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090640 | AT5G03740.1 | 40.273 | 293 | 152 | 7 | 1 | 271 | 1 | 292 | 9.33e-48 | 160 |
| Msa1090640 | AT3G44750.2 | 36.996 | 273 | 137 | 6 | 1 | 271 | 1 | 240 | 7.49e-39 | 136 |
| Msa1090640 | AT3G44750.1 | 35.531 | 273 | 144 | 6 | 1 | 271 | 1 | 243 | 1.28e-36 | 130 |
| Msa1090640 | AT5G22650.2 | 34.722 | 288 | 132 | 9 | 1 | 247 | 1 | 273 | 4.36e-26 | 104 |
| Msa1090640 | AT5G22650.1 | 34.602 | 289 | 132 | 9 | 1 | 247 | 1 | 274 | 5.73e-26 | 104 |
| Msa1090640 | AT2G27840.4 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 8.79e-21 | 86.7 |
| Msa1090640 | AT2G27840.3 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 2.12e-20 | 87.0 |
| Msa1090640 | AT2G27840.1 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 3.39e-20 | 84.7 |
| Msa1090640 | AT2G27840.2 | 46.575 | 73 | 35 | 3 | 23 | 93 | 1 | 71 | 5.43e-11 | 60.8 |
Find 83 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTGCAGTCATGGAGTTT+TGG | 0.186768 | 7_3:-5540172 | Msa1090640:exon |
| GAAAATACAGTTGTTGATTT+AGG | 0.205019 | 7_3:-5535972 | Msa1090640:three_prime_UTR |
| GTTAGCATCTTGATCTTCTT+TGG | 0.207090 | 7_3:-5536009 | Msa1090640:three_prime_UTR |
| ATCTTGATCTTCTTTGGATC+TGG | 0.208948 | 7_3:-5536003 | Msa1090640:three_prime_UTR |
| CGCTCCCATATTTCCAGTTA+TGG | 0.260338 | 7_3:+5538446 | None:intergenic |
| CTATCCCATAACTGGAAATA+TGG | 0.264248 | 7_3:-5538451 | Msa1090640:CDS |
| TTAGGTGTTTGAGGCATATT+AGG | 0.275611 | 7_3:-5535836 | Msa1090640:three_prime_UTR |
| CATATTAGGATTGGATGTTT+TGG | 0.288217 | 7_3:-5535822 | Msa1090640:three_prime_UTR |
| CTTTATATGACAGGCATGTT+TGG | 0.291541 | 7_3:-5538614 | Msa1090640:intron |
| GGTGATCACAAGCTTCAAAT+TGG | 0.296127 | 7_3:-5538538 | Msa1090640:CDS |
| AACACCTGTACTTGTGAAAA+AGG | 0.297237 | 7_3:-5536891 | Msa1090640:CDS |
| TTTGGAGTCTCCTGCTTCTC+TGG | 0.303491 | 7_3:+5536248 | None:intergenic |
| TTTATATGACAGGCATGTTT+GGG | 0.313274 | 7_3:-5538613 | Msa1090640:intron |
| TGCCTTAGGTTCTCATAATA+AGG | 0.315168 | 7_3:-5536080 | Msa1090640:CDS |
| TATGGGAGCGTCTTCCTTGC+TGG | 0.325658 | 7_3:-5538433 | Msa1090640:CDS |
| CAACTCCAATCACCTGTTAC+AGG | 0.338113 | 7_3:+5536199 | None:intergenic |
| CCTTCACTTGGCACTGTGCT+TGG | 0.346567 | 7_3:+5536057 | None:intergenic |
| AGTTGTTGATTTAGGAAAAC+TGG | 0.354420 | 7_3:-5535964 | Msa1090640:three_prime_UTR |
| TCTTGATCTTCTTTGGATCT+GGG | 0.356960 | 7_3:-5536002 | Msa1090640:three_prime_UTR |
| GGGGAGGTCAGCAAGGATAA+AGG | 0.362925 | 7_3:-5538592 | Msa1090640:CDS |
| AATTTGAGCTATCCCATAAC+TGG | 0.378730 | 7_3:-5538459 | Msa1090640:CDS |
| TGATGCATTTACACCGGGTT+TGG | 0.381330 | 7_3:+5538011 | None:intergenic |
| GCAGATTTACCAGCCTGCTT+AGG | 0.386812 | 7_3:+5536287 | None:intergenic |
| TAGTCTCCAGTTACCTTCTT+CGG | 0.386819 | 7_3:+5537011 | None:intergenic |
| GCTCCCATATTTCCAGTTAT+GGG | 0.386902 | 7_3:+5538447 | None:intergenic |
| CTGGCGGTTTAGTTATGGTT+AGG | 0.396289 | 7_3:-5535854 | Msa1090640:three_prime_UTR |
| GTTTAGAGTATTATTAAACT+TGG | 0.409371 | 7_3:-5535927 | Msa1090640:three_prime_UTR |
| ACAGCTGCAATCCCTGTAAC+AGG | 0.418416 | 7_3:-5536211 | Msa1090640:intron |
| TAGTTATGGTTAGGTGTTTG+AGG | 0.418924 | 7_3:-5535845 | Msa1090640:three_prime_UTR |
| AAGAACTAACCAGTCTTCTC+TGG | 0.427252 | 7_3:+5536854 | None:intergenic |
| TGTTACTGGCGGTTTAGTTA+TGG | 0.429442 | 7_3:-5535859 | Msa1090640:three_prime_UTR |
| TTTAAGACTGAAGATGCCTT+AGG | 0.434410 | 7_3:-5536094 | Msa1090640:CDS |
| TAACAAGCAGCCAGAGAAGC+AGG | 0.434559 | 7_3:-5536258 | Msa1090640:CDS |
| CAGATTTACCAGCCTGCTTA+GGG | 0.438934 | 7_3:+5536288 | None:intergenic |
| GCATTTACACCGGGTTTGGC+AGG | 0.449487 | 7_3:+5538015 | None:intergenic |
| CACAAGTACAGGTGTTTCCT+TGG | 0.449840 | 7_3:+5536898 | None:intergenic |
| TGTTTGAGGCATATTAGGAT+TGG | 0.452721 | 7_3:-5535831 | Msa1090640:three_prime_UTR |
| AACTTCACATACAGGGATAC+CGG | 0.456270 | 7_3:+5538562 | None:intergenic |
| TTACCAGCCTGCTTAGGGTA+AGG | 0.466162 | 7_3:+5536293 | None:intergenic |
| CTTGATCTTCTTTGGATCTG+GGG | 0.466662 | 7_3:-5536001 | Msa1090640:three_prime_UTR |
| GAAGATATTATACTTGCTAA+TGG | 0.476177 | 7_3:-5538129 | Msa1090640:intron |
| GGGAGGTCAGCAAGGATAAA+GGG | 0.482905 | 7_3:-5538591 | Msa1090640:CDS |
| GCACTCTCTCTCTGCAGTCA+TGG | 0.496600 | 7_3:-5540180 | Msa1090640:exon |
| TATCCCATAACTGGAAATAT+GGG | 0.497848 | 7_3:-5538450 | Msa1090640:CDS |
| GATCACCAAACTTCACATAC+AGG | 0.505258 | 7_3:+5538554 | None:intergenic |
| CTGTAATCTCCACTAGACTT+TGG | 0.505848 | 7_3:+5536230 | None:intergenic |
| CCGATGAAATGTGGATAAGC+TGG | 0.506704 | 7_3:+5538721 | None:intergenic |
| GTATCCCTGTATGTGAAGTT+TGG | 0.511130 | 7_3:-5538559 | Msa1090640:CDS |
| TAGTGTCCCTTACCCTAAGC+AGG | 0.513510 | 7_3:-5536300 | Msa1090640:CDS |
| GGCCTTATTATGAGAACCTA+AGG | 0.516695 | 7_3:+5536078 | None:intergenic |
| GATTCATCTGATGCTAGTAC+TGG | 0.522501 | 7_3:-5537943 | Msa1090640:CDS |
| TTTGTTACTCCAGAGAAGAC+TGG | 0.525269 | 7_3:-5536863 | Msa1090640:intron |
| GTCCCTTACCCTAAGCAGGC+TGG | 0.535334 | 7_3:-5536296 | Msa1090640:CDS |
| AATCAGAAGGATGCTAGTAC+TGG | 0.537632 | 7_3:-5537976 | Msa1090640:CDS |
| TTAAGATCAAATTCTGACGT+TGG | 0.541262 | 7_3:-5535895 | Msa1090640:three_prime_UTR |
| TTATTTGAACGAAATTCGAA+TGG | 0.547131 | 7_3:+5540271 | Msa1090650:intron |
| TACCAGCCTGCTTAGGGTAA+GGG | 0.548023 | 7_3:+5536294 | None:intergenic |
| AGCTAACAAAACCCTTCACT+TGG | 0.555690 | 7_3:+5536045 | None:intergenic |
| CCAAGCACAGTGCCAAGTGA+AGG | 0.555760 | 7_3:-5536057 | Msa1090640:exon |
| GTCGTTTAGCCCATGGCGAA+TGG | 0.558159 | 7_3:-5537089 | Msa1090640:intron |
| TTTAGATACTGATTCTGAAG+AGG | 0.569513 | 7_3:-5538151 | Msa1090640:intron |
| CTGAAGGGAGCAACAAGAGG+AGG | 0.570018 | 7_3:-5536934 | Msa1090640:CDS |
| CCAGCTTATCCACATTTCAT+CGG | 0.582062 | 7_3:-5538721 | Msa1090640:intron |
| ATCTGATGCTAGTGAAGATG+AGG | 0.588334 | 7_3:-5537905 | Msa1090640:intron |
| GTAGGGAAACCTGCCAAACC+CGG | 0.592566 | 7_3:-5538024 | Msa1090640:intron |
| TGACAAGGAGACTCCGAAGA+AGG | 0.592738 | 7_3:-5537024 | Msa1090640:intron |
| CAGGAGACTCCAAAGTCTAG+TGG | 0.603055 | 7_3:-5536239 | Msa1090640:CDS |
| CAAGCACAGTGCCAAGTGAA+GGG | 0.609527 | 7_3:-5536056 | Msa1090640:exon |
| AACTCCAATCACCTGTTACA+GGG | 0.611246 | 7_3:+5536200 | None:intergenic |
| GAGGGATGCTGAATCTTCCA+AGG | 0.612820 | 7_3:-5536915 | Msa1090640:CDS |
| TGAAGGGAGCAACAAGAGGA+GGG | 0.614862 | 7_3:-5536933 | Msa1090640:CDS |
| AGACTGAAGGGAGCAACAAG+AGG | 0.615166 | 7_3:-5536937 | Msa1090640:CDS |
| AAGCATATACCGATGAAATG+TGG | 0.617686 | 7_3:+5538712 | None:intergenic |
| ACTTCACATACAGGGATACC+GGG | 0.620641 | 7_3:+5538563 | None:intergenic |
| TTAGGTGTCGAGGTAAAACA+TGG | 0.629801 | 7_3:-5538774 | Msa1090640:intron |
| AAAACATGGTGAACCACACA+AGG | 0.630125 | 7_3:-5538760 | Msa1090640:CDS |
| TATATGACAGGCATGTTTGG+GGG | 0.631765 | 7_3:-5538611 | Msa1090640:intron |
| TTATATGACAGGCATGTTTG+GGG | 0.632570 | 7_3:-5538612 | Msa1090640:intron |
| ATCACCAAACTTCACATACA+GGG | 0.632725 | 7_3:+5538555 | None:intergenic |
| CAAGGATAAAGGGAGTGACC+CGG | 0.634157 | 7_3:-5538581 | Msa1090640:CDS |
| AAGCGATGAAGATTCTGACA+AGG | 0.637276 | 7_3:-5537039 | Msa1090640:CDS |
| ACCAAATCAAAAGATGTCTG+AGG | 0.650289 | 7_3:+5538493 | None:intergenic |
| TTATGGTCACGTGTTACTGG+CGG | 0.671148 | 7_3:-5535870 | Msa1090640:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTAAAATATTTAAT+TGG | + | chr7_3:5538812-5538831 | None:intergenic | 0.0% |
| !!! | TTTTTTTGAAAGAAATTTTT+TGG | + | chr7_3:5538421-5538440 | None:intergenic | 10.0% |
| !!! | AATTTTAAATTTTAAGATTC+CGG | - | chr7_3:5540273-5540292 | Msa1090640:five_prime_UTR | 10.0% |
| !!! | TGTTTTTGTTTTTTTCAAAA+AGG | + | chr7_3:5536004-5536023 | None:intergenic | 15.0% |
| !! | ATGAAAAACTAAATAACAAA+TGG | + | chr7_3:5536994-5537013 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAGTTTTTCATT+TGG | - | chr7_3:5536995-5537014 | Msa1090640:intron | 15.0% |
| !!! | TAATAATATGGTTTTTAAGA+TGG | - | chr7_3:5537150-5537169 | Msa1090640:intron | 15.0% |
| !!! | AATAATATGGTTTTTAAGAT+GGG | - | chr7_3:5537151-5537170 | Msa1090640:intron | 15.0% |
| !! | CAGTATAAAATAGTATTAAA+AGG | + | chr7_3:5537690-5537709 | None:intergenic | 15.0% |
| !!! | ATTGTTCTAAATATTTATGT+AGG | - | chr7_3:5538024-5538043 | Msa1090640:intron | 15.0% |
| !!! | TTGTTCTAAATATTTATGTA+GGG | - | chr7_3:5538025-5538044 | Msa1090640:intron | 15.0% |
| !!! | TTTCAATATATAATGGATAT+TGG | - | chr7_3:5538208-5538227 | Msa1090640:intron | 15.0% |
| !! | TTAATTTAATGATTGAATCA+GGG | - | chr7_3:5538835-5538854 | Msa1090640:intron | 15.0% |
| !! | ACTCATATTAAATTCAAATT+CGG | + | chr7_3:5539101-5539120 | None:intergenic | 15.0% |
| !! | AAAAATGTAAAGTGATAGAA+AGG | + | chr7_3:5535939-5535958 | None:intergenic | 20.0% |
| !! | TTTCATGTATAAATATCGTT+AGG | - | chr7_3:5536067-5536086 | Msa1090640:CDS | 20.0% |
| !! | AAACTAAATAACAAATGGTA+GGG | + | chr7_3:5536989-5537008 | None:intergenic | 20.0% |
| !! | AAAACTAAATAACAAATGGT+AGG | + | chr7_3:5536990-5537009 | None:intergenic | 20.0% |
| !! | ATTTGGTCAATTTACAAAAA+AGG | - | chr7_3:5537012-5537031 | Msa1090640:intron | 20.0% |
| !!! | CGTTAATGTTTTTGTATAAA+TGG | - | chr7_3:5537421-5537440 | Msa1090640:intron | 20.0% |
| !!! | TTATTAGATTGCATTTTTGT+CGG | + | chr7_3:5537737-5537756 | None:intergenic | 20.0% |
| !! | AAGATTAAAGAATGTAGTTA+AGG | + | chr7_3:5537780-5537799 | None:intergenic | 20.0% |
| !!! | AAGTGGATTTCAATATATAA+TGG | - | chr7_3:5538201-5538220 | Msa1090640:intron | 20.0% |
| !! | TTGAATTAAATGAAATGCTA+TGG | - | chr7_3:5538321-5538340 | Msa1090640:intron | 20.0% |
| !! | TATGGAAAAATACAAATGTA+GGG | - | chr7_3:5538339-5538358 | Msa1090640:intron | 20.0% |
| !! | ATGTTTGTACCAAAAATTAA+TGG | - | chr7_3:5538443-5538462 | Msa1090640:CDS | 20.0% |
| !! | TAAAGGAAATCAAAACAATT+TGG | + | chr7_3:5538646-5538665 | None:intergenic | 20.0% |
| !! | GTTAATTTAATGATTGAATC+AGG | - | chr7_3:5538834-5538853 | Msa1090640:intron | 20.0% |
| !! | TAATTTAATGATTGAATCAG+GGG | - | chr7_3:5538836-5538855 | Msa1090640:intron | 20.0% |
| !! | TCAATAAAAAATTCAGTACT+CGG | + | chr7_3:5538913-5538932 | None:intergenic | 20.0% |
| !!! | AGTACTGAATTTTTTATTGA+AGG | - | chr7_3:5538913-5538932 | Msa1090640:intron | 20.0% |
| !!! | ATTCATCTTTTAGTTTGTTT+TGG | - | chr7_3:5538948-5538967 | Msa1090640:intron | 20.0% |
| !!! | GTTTAGAGTATTATTAAACT+TGG | - | chr7_3:5540139-5540158 | Msa1090640:intron | 20.0% |
| !! | AAATTCGAATGGATCTTTTT+GGG | + | chr7_3:5535787-5535806 | None:intergenic | 25.0% |
| ! | TTATTTGAACGAAATTCGAA+TGG | + | chr7_3:5535798-5535817 | None:intergenic | 25.0% |
| !!! | TTGCAGTTTTTGGATAAAAA+TGG | - | chr7_3:5536092-5536111 | Msa1090640:CDS | 25.0% |
| ! | TACAGATTATTGTCAAATAG+CGG | + | chr7_3:5536342-5536361 | None:intergenic | 25.0% |
| !! | TGTTTCTATTGGAAAAAATG+TGG | - | chr7_3:5536524-5536543 | Msa1090640:intron | 25.0% |
| ! | AATGTGGTAGATTATCTTAT+TGG | - | chr7_3:5536540-5536559 | Msa1090640:intron | 25.0% |
| !! | ATCAACTATTCTCAGTTTTA+TGG | + | chr7_3:5536645-5536664 | None:intergenic | 25.0% |
| ! | AACTAAATAACAAATGGTAG+GGG | + | chr7_3:5536988-5537007 | None:intergenic | 25.0% |
| ! | CAATGTAATAGAAACTAAAG+AGG | + | chr7_3:5537093-5537112 | None:intergenic | 25.0% |
| ! | ATATAAAACTCCTTTCATGT+GGG | + | chr7_3:5537119-5537138 | None:intergenic | 25.0% |
| ! | AGGATAAAAAAATCCAAAGA+AGG | + | chr7_3:5537225-5537244 | None:intergenic | 25.0% |
| ! | TCCTGTTGCTAAATTAATAT+TGG | - | chr7_3:5537241-5537260 | Msa1090640:intron | 25.0% |
| ! | TCCAATATTAATTTAGCAAC+AGG | + | chr7_3:5537245-5537264 | None:intergenic | 25.0% |
| ! | CAAAAACATTAACGATTCAA+TGG | + | chr7_3:5537415-5537434 | None:intergenic | 25.0% |
| !!! | ACATCTTTTGATTTGGTTTT+TGG | - | chr7_3:5537579-5537598 | Msa1090640:intron | 25.0% |
| !!! | CATCTTTTGATTTGGTTTTT+GGG | - | chr7_3:5537580-5537599 | Msa1090640:intron | 25.0% |
| !! | ATTTTTAATCGAATGTGAAC+AGG | - | chr7_3:5537656-5537675 | Msa1090640:intron | 25.0% |
| ! | TTTACTGATGAATATTCTGA+TGG | - | chr7_3:5537799-5537818 | Msa1090640:intron | 25.0% |
| !! | GAAGATATTATACTTGCTAA+TGG | - | chr7_3:5537937-5537956 | Msa1090640:CDS | 25.0% |
| !! | TATTTAGAACAATATGACAC+AGG | + | chr7_3:5538017-5538036 | None:intergenic | 25.0% |
| ! | AAAACAGAAAAAGAATCAGA+AGG | - | chr7_3:5538077-5538096 | Msa1090640:intron | 25.0% |
| ! | TAACTGTATAATCTAGAAAG+TGG | - | chr7_3:5538184-5538203 | Msa1090640:intron | 25.0% |
| !!! | CATCGAACAATTTTGTTTAT+CGG | + | chr7_3:5538277-5538296 | None:intergenic | 25.0% |
| ! | CTATGGAAAAATACAAATGT+AGG | - | chr7_3:5538338-5538357 | Msa1090640:intron | 25.0% |
| !! | GTGGTAAAACCATTAATTTT+TGG | + | chr7_3:5538455-5538474 | None:intergenic | 25.0% |
| ! | CTAAAAACTCATTCACATAA+AGG | + | chr7_3:5538663-5538682 | None:intergenic | 25.0% |
| !!! | ATAATCCTGTTTTTCTTGAT+CGG | - | chr7_3:5538752-5538771 | Msa1090640:CDS | 25.0% |
| ! | AATTTAATGATTGAATCAGG+GGG | - | chr7_3:5538837-5538856 | Msa1090640:intron | 25.0% |
| ! | TTTAATATACGATGTAGACT+TGG | - | chr7_3:5538882-5538901 | Msa1090640:intron | 25.0% |
| ! | AAACTAACAAACAAAGTACA+GGG | + | chr7_3:5539240-5539259 | None:intergenic | 25.0% |
| ! | AAAACTAACAAACAAAGTAC+AGG | + | chr7_3:5539241-5539260 | None:intergenic | 25.0% |
| ! | GTCATCTAGATAGATTTATA+AGG | - | chr7_3:5539333-5539352 | Msa1090640:intron | 25.0% |
| !! | AGTTTAACTTTATTCAAGTC+CGG | + | chr7_3:5539508-5539527 | None:intergenic | 25.0% |
| ! | AAAATATTTAACACATGGTC+AGG | + | chr7_3:5539532-5539551 | None:intergenic | 25.0% |
| ! | GTCAGAAAATATTTAACACA+TGG | + | chr7_3:5539537-5539556 | None:intergenic | 25.0% |
| !! | ACGAGAATTATGATATTTTC+AGG | - | chr7_3:5539734-5539753 | Msa1090640:intron | 25.0% |
| !!! | AGAATTATGATATTTTCAGG+TGG | - | chr7_3:5539737-5539756 | Msa1090640:intron | 25.0% |
| !! | AGTTGTCTTTTTATATCTGT+TGG | - | chr7_3:5539885-5539904 | Msa1090640:intron | 25.0% |
| !! | AAATCAACAACTGTATTTTC+AGG | + | chr7_3:5540094-5540113 | None:intergenic | 25.0% |
| !!! | GAAAATACAGTTGTTGATTT+AGG | - | chr7_3:5540094-5540113 | Msa1090640:intron | 25.0% |
| ! | GAAATTCGAATGGATCTTTT+TGG | + | chr7_3:5535788-5535807 | None:intergenic | 30.0% |
| AATGTAAAGTGATAGAAAGG+AGG | + | chr7_3:5535936-5535955 | None:intergenic | 30.0% | |
| AGAATCGCATATAAAACGAT+AGG | - | chr7_3:5536040-5536059 | Msa1090640:three_prime_UTR | 30.0% | |
| !! | CAGTTTTTGGATAAAAATGG+TGG | - | chr7_3:5536095-5536114 | Msa1090640:CDS | 30.0% |
| ! | TAAAAATGGTGGAAATGTGA+TGG | - | chr7_3:5536106-5536125 | Msa1090640:intron | 30.0% |
| TTGTTAAATAGCAACTACAG+CGG | + | chr7_3:5536423-5536442 | None:intergenic | 30.0% | |
| AACAAAACAAAAAAACGTCG+AGG | + | chr7_3:5536482-5536501 | None:intergenic | 30.0% | |
| ! | TTTTTCCAATAGAAACATCG+AGG | + | chr7_3:5536521-5536540 | None:intergenic | 30.0% |
| GTTCATTTCAGAGATTAGAT+TGG | + | chr7_3:5536590-5536609 | None:intergenic | 30.0% | |
| !!! | TGGGAGTTTTATTACACTTT+CGG | - | chr7_3:5536724-5536743 | Msa1090640:intron | 30.0% |
| CATTGTCTTAGACCAATAAA+AGG | - | chr7_3:5536751-5536770 | Msa1090640:intron | 30.0% | |
| GTTACAAAATCAGAGACATA+AGG | + | chr7_3:5536826-5536845 | None:intergenic | 30.0% | |
| !! | GTTAGTTCTGTTATAGAACT+CGG | - | chr7_3:5536904-5536923 | Msa1090640:CDS | 30.0% |
| ! | TTTAGAGTAAGTGAACTAAC+TGG | + | chr7_3:5536957-5536976 | None:intergenic | 30.0% |
| TATAAAACTCCTTTCATGTG+GGG | + | chr7_3:5537118-5537137 | None:intergenic | 30.0% | |
| GATATAAAACTCCTTTCATG+TGG | + | chr7_3:5537120-5537139 | None:intergenic | 30.0% | |
| !! | TGAAAGGAGTTTTATATCAC+TGG | - | chr7_3:5537122-5537141 | Msa1090640:intron | 30.0% |
| !! | GAAAGGAGTTTTATATCACT+GGG | - | chr7_3:5537123-5537142 | Msa1090640:intron | 30.0% |
| TCACTGGGTTGTTAATAATA+TGG | - | chr7_3:5537138-5537157 | Msa1090640:intron | 30.0% | |
| CAATATTGTGTTTCCTTCTT+TGG | - | chr7_3:5537209-5537228 | Msa1090640:intron | 30.0% | |
| ! | TCACAAATCACAATCCTTTT+AGG | - | chr7_3:5537274-5537293 | Msa1090640:intron | 30.0% |
| GTCTCAAATCTTTATATGAC+AGG | - | chr7_3:5537443-5537462 | Msa1090640:intron | 30.0% | |
| TTTATATGACAGGCATGTTT+GGG | - | chr7_3:5537453-5537472 | Msa1090640:intron | 30.0% | |
| !!! | TTTTGATTTGGTTTTTGGGA+AGG | - | chr7_3:5537584-5537603 | Msa1090640:intron | 30.0% |
| TATCCCATAACTGGAAATAT+GGG | - | chr7_3:5537616-5537635 | Msa1090640:intron | 30.0% | |
| ATTCGATTAAAAATCCAGCA+AGG | + | chr7_3:5537650-5537669 | None:intergenic | 30.0% | |
| !! | TTTAGATACTGATTCTGAAG+AGG | - | chr7_3:5537915-5537934 | Msa1090640:CDS | 30.0% |
| GACAATAGAAATGCATAAGA+TGG | + | chr7_3:5537980-5537999 | None:intergenic | 30.0% | |
| CGATAAACAAAATTGTTCGA+TGG | - | chr7_3:5538275-5538294 | Msa1090640:intron | 30.0% | |
| TTTAATTCAATAACAGCAGC+TGG | + | chr7_3:5538311-5538330 | None:intergenic | 30.0% | |
| AATACTAATTGGGTAGAAGA+AGG | - | chr7_3:5538369-5538388 | Msa1090640:intron | 30.0% | |
| ACTTACAAAATAGATGAAGC+TGG | - | chr7_3:5538536-5538555 | Msa1090640:CDS | 30.0% | |
| !! | AAACACCTTCACTTTTAAGT+GGG | + | chr7_3:5538608-5538627 | None:intergenic | 30.0% |
| !! | AAAACACCTTCACTTTTAAG+TGG | + | chr7_3:5538609-5538628 | None:intergenic | 30.0% |
| TCAAGAAAAACAGGATTATG+AGG | + | chr7_3:5538751-5538770 | None:intergenic | 30.0% | |
| GATAAGAGTTATCAACTATG+TGG | - | chr7_3:5538785-5538804 | Msa1090640:intron | 30.0% | |
| !!! | TGAGTTTTGTTTTAGACTGA+AGG | - | chr7_3:5539116-5539135 | Msa1090640:intron | 30.0% |
| !!! | GAGTTTTGTTTTAGACTGAA+GGG | - | chr7_3:5539117-5539136 | Msa1090640:intron | 30.0% |
| AACTAACAAACAAAGTACAG+GGG | + | chr7_3:5539239-5539258 | None:intergenic | 30.0% | |
| TTATGCAATAACAGTGCAAA+GGG | + | chr7_3:5539380-5539399 | None:intergenic | 30.0% | |
| TTTATGCAATAACAGTGCAA+AGG | + | chr7_3:5539381-5539400 | None:intergenic | 30.0% | |
| TGCATAAAATTGCATTGTTG+TGG | - | chr7_3:5539393-5539412 | Msa1090640:intron | 30.0% | |
| ! | TTAGTCGCAATTTTGTCTTT+TGG | - | chr7_3:5539569-5539588 | Msa1090640:intron | 30.0% |
| ATTAACAAAGCAGAACTGAA+AGG | - | chr7_3:5539706-5539725 | Msa1090640:intron | 30.0% | |
| !!! | GCAATTTTTATTTTGACTGC+AGG | - | chr7_3:5539946-5539965 | Msa1090640:intron | 30.0% |
| !! | AGTTGTTGATTTAGGAAAAC+TGG | - | chr7_3:5540102-5540121 | Msa1090640:intron | 30.0% |
| TTAAGATCAAATTCTGACGT+TGG | - | chr7_3:5540171-5540190 | Msa1090640:exon | 30.0% | |
| !!! | AAATTCTGACGTTGGTTTTA+TGG | - | chr7_3:5540179-5540198 | Msa1090640:exon | 30.0% |
| ! | CATATTAGGATTGGATGTTT+TGG | - | chr7_3:5540244-5540263 | Msa1090640:five_prime_UTR | 30.0% |
| ! | TCCTATTCAATTTTTGCTTC+TGG | + | chr7_3:5540299-5540318 | Msa1090650:intron | 30.0% |
| !! | TCTTTTTGGGCTTAGTTGAA+TGG | + | chr7_3:5535774-5535793 | None:intergenic | 35.0% |
| TGATAGAAAGGAGGAAGAAA+CGG | + | chr7_3:5535927-5535946 | None:intergenic | 35.0% | |
| ! | TCGTTAGGTTTTGCAGTTTT+TGG | - | chr7_3:5536082-5536101 | Msa1090640:CDS | 35.0% |
| CATGAGGATGATGATAGTTA+GGG | + | chr7_3:5536165-5536184 | None:intergenic | 35.0% | |
| TCATGAGGATGATGATAGTT+AGG | + | chr7_3:5536166-5536185 | None:intergenic | 35.0% | |
| !! | AGTTTTGTGGAGTTTTCATG+AGG | + | chr7_3:5536181-5536200 | None:intergenic | 35.0% |
| ! | AGTAAGCGCAAAAAGTTTTG+TGG | + | chr7_3:5536194-5536213 | None:intergenic | 35.0% |
| CAGATTGTTAAAATTCCGCT+AGG | - | chr7_3:5536291-5536310 | Msa1090640:CDS | 35.0% | |
| ! | AAAGACCTCGATGTTTCTAT+TGG | - | chr7_3:5536513-5536532 | Msa1090640:intron | 35.0% |
| !!! | GGGAGTTTTATTACACTTTC+GGG | - | chr7_3:5536725-5536744 | Msa1090640:intron | 35.0% |
| !!! | GGAGTTTTATTACACTTTCG+GGG | - | chr7_3:5536726-5536745 | Msa1090640:intron | 35.0% |
| TTAGACCAATAAAAGGTCAC+TGG | - | chr7_3:5536758-5536777 | Msa1090640:intron | 35.0% | |
| ! | TTCAACCAGTGACCTTTTAT+TGG | + | chr7_3:5536766-5536785 | None:intergenic | 35.0% |
| AAAAGACAGAAAGTGAAGTG+CGG | + | chr7_3:5537066-5537085 | None:intergenic | 35.0% | |
| !! | TGGATAAGCTGGTTATTTTC+TGG | + | chr7_3:5537337-5537356 | None:intergenic | 35.0% |
| AAGCATATACCGATGAAATG+TGG | + | chr7_3:5537357-5537376 | None:intergenic | 35.0% | |
| CTTTATATGACAGGCATGTT+TGG | - | chr7_3:5537452-5537471 | Msa1090640:intron | 35.0% | |
| TTATATGACAGGCATGTTTG+GGG | - | chr7_3:5537454-5537473 | Msa1090640:intron | 35.0% | |
| ATCACCAAACTTCACATACA+GGG | + | chr7_3:5537514-5537533 | None:intergenic | 35.0% | |
| !! | TCCTCAGACATCTTTTGATT+TGG | - | chr7_3:5537572-5537591 | Msa1090640:intron | 35.0% |
| ACCAAATCAAAAGATGTCTG+AGG | + | chr7_3:5537576-5537595 | None:intergenic | 35.0% | |
| AATTTGAGCTATCCCATAAC+TGG | - | chr7_3:5537607-5537626 | Msa1090640:intron | 35.0% | |
| CTATCCCATAACTGGAAATA+TGG | - | chr7_3:5537615-5537634 | Msa1090640:intron | 35.0% | |
| !!! | TGTTTTGATGCATTTACACC+GGG | + | chr7_3:5538063-5538082 | None:intergenic | 35.0% |
| !!! | CTGTTTTGATGCATTTACAC+CGG | + | chr7_3:5538064-5538083 | None:intergenic | 35.0% |
| ! | TATCGGCACAACATCTATTT+TGG | + | chr7_3:5538260-5538279 | None:intergenic | 35.0% |
| AAAATACAAATGTAGGGCAC+TGG | - | chr7_3:5538345-5538364 | Msa1090640:intron | 35.0% | |
| TGCTCTCATATATCTAACAG+TGG | + | chr7_3:5538474-5538493 | None:intergenic | 35.0% | |
| ! | AAAGCATTCCTGAGATGATT+CGG | - | chr7_3:5538504-5538523 | Msa1090640:CDS | 35.0% |
| ACAAAATAGATGAAGCTGGT+CGG | - | chr7_3:5538540-5538559 | Msa1090640:CDS | 35.0% | |
| ACATTCCCACTTAAAAGTGA+AGG | - | chr7_3:5538600-5538619 | Msa1090640:CDS | 35.0% | |
| ACAGGATTATGAGGACAATT+TGG | + | chr7_3:5538742-5538761 | None:intergenic | 35.0% | |
| !!! | TTATTTTGACCATTCGCCAT+GGG | + | chr7_3:5538989-5539008 | None:intergenic | 35.0% |
| !!! | TTTATTTTGACCATTCGCCA+TGG | + | chr7_3:5538990-5539009 | None:intergenic | 35.0% |
| AACACCTGTACTTGTGAAAA+AGG | - | chr7_3:5539175-5539194 | Msa1090640:intron | 35.0% | |
| !! | TTTGCCTTTTTCACAAGTAC+AGG | + | chr7_3:5539182-5539201 | None:intergenic | 35.0% |
| TTAGTGTCAAACAAGGCTTA+GGG | + | chr7_3:5539294-5539313 | None:intergenic | 35.0% | |
| ATTAGTGTCAAACAAGGCTT+AGG | + | chr7_3:5539295-5539314 | None:intergenic | 35.0% | |
| CACAACATTAGTGTCAAACA+AGG | + | chr7_3:5539301-5539320 | None:intergenic | 35.0% | |
| AACTACTTTGTGACTTATGC+CGG | - | chr7_3:5539486-5539505 | Msa1090640:intron | 35.0% | |
| !!! | TTATGATATTTTCAGGTGGC+AGG | - | chr7_3:5539741-5539760 | Msa1090640:intron | 35.0% |
| TAAGTGTGTAAAGAACGATG+AGG | + | chr7_3:5539917-5539936 | None:intergenic | 35.0% | |
| ! | TTTAAGACTGAAGATGCCTT+AGG | - | chr7_3:5539972-5539991 | Msa1090640:intron | 35.0% |
| TGCCTTAGGTTCTCATAATA+AGG | - | chr7_3:5539986-5540005 | Msa1090640:intron | 35.0% | |
| GTTAGCATCTTGATCTTCTT+TGG | - | chr7_3:5540057-5540076 | Msa1090640:intron | 35.0% | |
| ATCTTGATCTTCTTTGGATC+TGG | - | chr7_3:5540063-5540082 | Msa1090640:intron | 35.0% | |
| TCTTGATCTTCTTTGGATCT+GGG | - | chr7_3:5540064-5540083 | Msa1090640:intron | 35.0% | |
| TAGTTATGGTTAGGTGTTTG+AGG | - | chr7_3:5540221-5540240 | Msa1090640:five_prime_UTR | 35.0% | |
| ! | TTAGGTGTTTGAGGCATATT+AGG | - | chr7_3:5540230-5540249 | Msa1090640:five_prime_UTR | 35.0% |
| ! | TGTTTGAGGCATATTAGGAT+TGG | - | chr7_3:5540235-5540254 | Msa1090640:five_prime_UTR | 35.0% |
| ! | ATTCAATTTTTGCTTCTGGC+CGG | + | chr7_3:5540295-5540314 | Msa1090650:intron | 35.0% |
| GCCAGAAGCAAAAATTGAAT+AGG | - | chr7_3:5540295-5540314 | Msa1090640:five_prime_UTR | 35.0% | |
| TTGTCAAATAGCGGCTATAC+TGG | + | chr7_3:5536333-5536352 | None:intergenic | 40.0% | |
| AGTGAATCGCAGAGTAATAG+TGG | - | chr7_3:5536371-5536390 | Msa1090640:intron | 40.0% | |
| AGTCCAAATTCCGCTATGAT+AGG | - | chr7_3:5536396-5536415 | Msa1090640:intron | 40.0% | |
| GTCCAAATTCCGCTATGATA+GGG | - | chr7_3:5536397-5536416 | Msa1090640:intron | 40.0% | |
| AGTTCCTACAATCATCTCGA+AGG | - | chr7_3:5536694-5536713 | Msa1090640:intron | 40.0% | |
| GTTCCTACAATCATCTCGAA+GGG | - | chr7_3:5536695-5536714 | Msa1090640:intron | 40.0% | |
| ATCATCTCGAAGGGACTAAA+TGG | - | chr7_3:5536704-5536723 | Msa1090640:intron | 40.0% | |
| TCATCTCGAAGGGACTAAAT+GGG | - | chr7_3:5536705-5536724 | Msa1090640:intron | 40.0% | |
| GAGACATAAGGATCGAATAG+AGG | + | chr7_3:5536814-5536833 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTGAAGTAGCCAAT+TGG | - | chr7_3:5536923-5536942 | Msa1090640:CDS | 40.0% |
| TACATTGTACCCCACATGAA+AGG | - | chr7_3:5537106-5537125 | Msa1090640:intron | 40.0% | |
| ! | GTTTTACCTCGACACCTAAA+AGG | + | chr7_3:5537291-5537310 | None:intergenic | 40.0% |
| !! | TTAGGTGTCGAGGTAAAACA+TGG | - | chr7_3:5537292-5537311 | Msa1090640:intron | 40.0% |
| AAAACATGGTGAACCACACA+AGG | - | chr7_3:5537306-5537325 | Msa1090640:intron | 40.0% | |
| !!! | TTTTCTGGAACAACCTTGTG+TGG | + | chr7_3:5537322-5537341 | None:intergenic | 40.0% |
| CCAGCTTATCCACATTTCAT+CGG | - | chr7_3:5537345-5537364 | Msa1090640:intron | 40.0% | |
| TATATGACAGGCATGTTTGG+GGG | - | chr7_3:5537455-5537474 | Msa1090640:intron | 40.0% | |
| AACTTCACATACAGGGATAC+CGG | + | chr7_3:5537507-5537526 | None:intergenic | 40.0% | |
| GTATCCCTGTATGTGAAGTT+TGG | - | chr7_3:5537507-5537526 | Msa1090640:intron | 40.0% | |
| GATCACCAAACTTCACATAC+AGG | + | chr7_3:5537515-5537534 | None:intergenic | 40.0% | |
| GGTGATCACAAGCTTCAAAT+TGG | - | chr7_3:5537528-5537547 | Msa1090640:intron | 40.0% | |
| GCTCCCATATTTCCAGTTAT+GGG | + | chr7_3:5537622-5537641 | None:intergenic | 40.0% | |
| AATCAGAAGGATGCTAGTAC+TGG | - | chr7_3:5538090-5538109 | Msa1090640:intron | 40.0% | |
| GATTCATCTGATGCTAGTAC+TGG | - | chr7_3:5538123-5538142 | Msa1090640:intron | 40.0% | |
| ATCTGATGCTAGTGAAGATG+AGG | - | chr7_3:5538161-5538180 | Msa1090640:intron | 40.0% | |
| !! | AGGGCACTGGTAATACTAAT+TGG | - | chr7_3:5538358-5538377 | Msa1090640:intron | 40.0% |
| !! | GGGCACTGGTAATACTAATT+GGG | - | chr7_3:5538359-5538378 | Msa1090640:intron | 40.0% |
| CTAATTGGGTAGAAGAAGGT+AGG | - | chr7_3:5538373-5538392 | Msa1090640:intron | 40.0% | |
| GTAGAAGAAGGTAGGATACT+TGG | - | chr7_3:5538381-5538400 | Msa1090640:intron | 40.0% | |
| AAGCATTCCTGAGATGATTC+GGG | - | chr7_3:5538505-5538524 | Msa1090640:CDS | 40.0% | |
| CAAAATAGATGAAGCTGGTC+GGG | - | chr7_3:5538541-5538560 | Msa1090640:CDS | 40.0% | |
| AAAATAGATGAAGCTGGTCG+GGG | - | chr7_3:5538542-5538561 | Msa1090640:CDS | 40.0% | |
| CATGACCGATCAAGAAAAAC+AGG | + | chr7_3:5538760-5538779 | None:intergenic | 40.0% | |
| AAGCGATGAAGATTCTGACA+AGG | - | chr7_3:5539027-5539046 | Msa1090640:intron | 40.0% | |
| TAGTCTCCAGTTACCTTCTT+CGG | + | chr7_3:5539058-5539077 | None:intergenic | 40.0% | |
| TTTGTTACTCCAGAGAAGAC+TGG | - | chr7_3:5539203-5539222 | Msa1090640:intron | 40.0% | |
| AAGAACTAACCAGTCTTCTC+TGG | + | chr7_3:5539215-5539234 | None:intergenic | 40.0% | |
| TAGTGTCAAACAAGGCTTAG+GGG | + | chr7_3:5539293-5539312 | None:intergenic | 40.0% | |
| AAGTGGTGAGAGAACATTGT+GGG | + | chr7_3:5539431-5539450 | None:intergenic | 40.0% | |
| ATGGAGCAGCTATTGCTTTA+TGG | - | chr7_3:5539460-5539479 | Msa1090640:intron | 40.0% | |
| GACTGATTGTTTAACCTCGT+TGG | - | chr7_3:5539655-5539674 | Msa1090640:intron | 40.0% | |
| ACAAATTAACGAGTCCAACG+AGG | + | chr7_3:5539672-5539691 | None:intergenic | 40.0% | |
| CTGTAATCTCCACTAGACTT+TGG | + | chr7_3:5539839-5539858 | None:intergenic | 40.0% | |
| AACTCCAATCACCTGTTACA+GGG | + | chr7_3:5539869-5539888 | None:intergenic | 40.0% | |
| !! | GGCCTTATTATGAGAACCTA+AGG | + | chr7_3:5539991-5540010 | None:intergenic | 40.0% |
| AGCTAACAAAACCCTTCACT+TGG | + | chr7_3:5540024-5540043 | None:intergenic | 40.0% | |
| CTTGATCTTCTTTGGATCTG+GGG | - | chr7_3:5540065-5540084 | Msa1090640:intron | 40.0% | |
| ! | GTTTTATGGTCACGTGTTAC+TGG | - | chr7_3:5540193-5540212 | Msa1090640:five_prime_UTR | 40.0% |
| TGTTACTGGCGGTTTAGTTA+TGG | - | chr7_3:5540207-5540226 | Msa1090640:five_prime_UTR | 40.0% | |
| ! | TCTCTGCAGTCATGGAGTTT+TGG | - | chr7_3:5535894-5535913 | Msa1090640:three_prime_UTR | 45.0% |
| ! | CTCTGCAGTCATGGAGTTTT+GGG | - | chr7_3:5535895-5535914 | Msa1090640:three_prime_UTR | 45.0% |
| ! | TCTGCAGTCATGGAGTTTTG+GGG | - | chr7_3:5535896-5535915 | Msa1090640:three_prime_UTR | 45.0% |
| CAATGTTGTGCAATCGCTGT+TGG | - | chr7_3:5536268-5536287 | Msa1090640:CDS | 45.0% | |
| TCTGTAACACTACAGCCTAG+CGG | + | chr7_3:5536309-5536328 | None:intergenic | 45.0% | |
| AGTCCCTTCGAGATGATTGT+AGG | + | chr7_3:5536701-5536720 | None:intergenic | 45.0% | |
| ! | AAAGGTCACTGGTTGAATCG+CGG | - | chr7_3:5536769-5536788 | Msa1090640:intron | 45.0% |
| TAACTGGCTGTGAGACCAAT+TGG | + | chr7_3:5536941-5536960 | None:intergenic | 45.0% | |
| !! | CACAATCCTTTTAGGTGTCG+AGG | - | chr7_3:5537282-5537301 | Msa1090640:intron | 45.0% |
| CCGATGAAATGTGGATAAGC+TGG | + | chr7_3:5537348-5537367 | None:intergenic | 45.0% | |
| ACTTCACATACAGGGATACC+GGG | + | chr7_3:5537506-5537525 | None:intergenic | 45.0% | |
| CGCTCCCATATTTCCAGTTA+TGG | + | chr7_3:5537623-5537642 | None:intergenic | 45.0% | |
| TGATGCATTTACACCGGGTT+TGG | + | chr7_3:5538058-5538077 | None:intergenic | 45.0% | |
| ATTACCACCCGAATCATCTC+AGG | + | chr7_3:5538515-5538534 | None:intergenic | 45.0% | |
| !! | GTAATGTGTCGTTTAGCCCA+TGG | - | chr7_3:5538970-5538989 | Msa1090640:intron | 45.0% |
| CACAAGTACAGGTGTTTCCT+TGG | + | chr7_3:5539171-5539190 | None:intergenic | 45.0% | |
| AGTGGTGAGAGAACATTGTG+GGG | + | chr7_3:5539430-5539449 | None:intergenic | 45.0% | |
| GAAGTGGTGAGAGAACATTG+TGG | + | chr7_3:5539432-5539451 | None:intergenic | 45.0% | |
| GCAATAGCTGCTCCATGAAT+AGG | + | chr7_3:5539456-5539475 | None:intergenic | 45.0% | |
| CAGATTTACCAGCCTGCTTA+GGG | + | chr7_3:5539781-5539800 | None:intergenic | 45.0% | |
| CAATCCCTGTAACAGGTGAT+TGG | - | chr7_3:5539862-5539881 | Msa1090640:intron | 45.0% | |
| CAACTCCAATCACCTGTTAC+AGG | + | chr7_3:5539870-5539889 | None:intergenic | 45.0% | |
| TGTAAAGAACGATGAGGAGG+AGG | + | chr7_3:5539911-5539930 | None:intergenic | 45.0% | |
| GTGTGTAAAGAACGATGAGG+AGG | + | chr7_3:5539914-5539933 | None:intergenic | 45.0% | |
| ! | TTATGGTCACGTGTTACTGG+CGG | - | chr7_3:5540196-5540215 | Msa1090640:five_prime_UTR | 45.0% |
| CTGGCGGTTTAGTTATGGTT+AGG | - | chr7_3:5540212-5540231 | Msa1090640:five_prime_UTR | 45.0% | |
| ! | GGCCCTATCATAGCGGAATT+TGG | + | chr7_3:5536402-5536421 | None:intergenic | 50.0% |
| GGGAGGTCAGCAAGGATAAA+GGG | - | chr7_3:5537475-5537494 | Msa1090640:intron | 50.0% | |
| CAAGGATAAAGGGAGTGACC+CGG | - | chr7_3:5537485-5537504 | Msa1090640:intron | 50.0% | |
| ! | CATTCCTGAGATGATTCGGG+TGG | - | chr7_3:5538508-5538527 | Msa1090640:CDS | 50.0% |
| AGGGGGCTATTGTGTCTTAG+TGG | - | chr7_3:5538854-5538873 | Msa1090640:intron | 50.0% | |
| TGACAAGGAGACTCCGAAGA+AGG | - | chr7_3:5539042-5539061 | Msa1090640:intron | 50.0% | |
| GAGACTCCGAAGAAGGTAAC+TGG | - | chr7_3:5539049-5539068 | Msa1090640:intron | 50.0% | |
| AGACTGAAGGGAGCAACAAG+AGG | - | chr7_3:5539129-5539148 | Msa1090640:intron | 50.0% | |
| TGAAGGGAGCAACAAGAGGA+GGG | - | chr7_3:5539133-5539152 | Msa1090640:intron | 50.0% | |
| GAGGGATGCTGAATCTTCCA+AGG | - | chr7_3:5539151-5539170 | Msa1090640:intron | 50.0% | |
| CTCACCACTTCGCCTATTCA+TGG | - | chr7_3:5539441-5539460 | Msa1090640:intron | 50.0% | |
| TGCTCCATGAATAGGCGAAG+TGG | + | chr7_3:5539448-5539467 | None:intergenic | 50.0% | |
| TAGTGTCCCTTACCCTAAGC+AGG | - | chr7_3:5539766-5539785 | Msa1090640:intron | 50.0% | |
| TACCAGCCTGCTTAGGGTAA+GGG | + | chr7_3:5539775-5539794 | None:intergenic | 50.0% | |
| TTACCAGCCTGCTTAGGGTA+AGG | + | chr7_3:5539776-5539795 | None:intergenic | 50.0% | |
| GCAGATTTACCAGCCTGCTT+AGG | + | chr7_3:5539782-5539801 | None:intergenic | 50.0% | |
| TAACAAGCAGCCAGAGAAGC+AGG | - | chr7_3:5539808-5539827 | Msa1090640:intron | 50.0% | |
| ! | TTTGGAGTCTCCTGCTTCTC+TGG | + | chr7_3:5539821-5539840 | None:intergenic | 50.0% |
| CAGGAGACTCCAAAGTCTAG+TGG | - | chr7_3:5539827-5539846 | Msa1090640:intron | 50.0% | |
| ACAGCTGCAATCCCTGTAAC+AGG | - | chr7_3:5539855-5539874 | Msa1090640:intron | 50.0% | |
| CAAGCACAGTGCCAAGTGAA+GGG | - | chr7_3:5540010-5540029 | Msa1090640:intron | 50.0% | |
| GCACTCTCTCTCTGCAGTCA+TGG | - | chr7_3:5535886-5535905 | Msa1090640:three_prime_UTR | 55.0% | |
| CTACAGCGGCCCTATCATAG+CGG | + | chr7_3:5536409-5536428 | None:intergenic | 55.0% | |
| ! | CACTGGTTGAATCGCGGAGT+CGG | - | chr7_3:5536775-5536794 | Msa1090640:intron | 55.0% |
| !! | ATCGCGGAGTCGGCTTGTAA+AGG | - | chr7_3:5536785-5536804 | Msa1090640:intron | 55.0% |
| ATGACAGGCATGTTTGGGGG+AGG | - | chr7_3:5537458-5537477 | Msa1090640:intron | 55.0% | |
| ATGTTTGGGGGAGGTCAGCA+AGG | - | chr7_3:5537467-5537486 | Msa1090640:intron | 55.0% | |
| GGGGAGGTCAGCAAGGATAA+AGG | - | chr7_3:5537474-5537493 | Msa1090640:intron | 55.0% | |
| !! | TATGGGAGCGTCTTCCTTGC+TGG | - | chr7_3:5537633-5537652 | Msa1090640:intron | 55.0% |
| GTAGGGAAACCTGCCAAACC+CGG | - | chr7_3:5538042-5538061 | Msa1090640:intron | 55.0% | |
| GCATTTACACCGGGTTTGGC+AGG | + | chr7_3:5538054-5538073 | None:intergenic | 55.0% | |
| GTCGTTTAGCCCATGGCGAA+TGG | - | chr7_3:5538977-5538996 | Msa1090640:intron | 55.0% | |
| CTGAAGGGAGCAACAAGAGG+AGG | - | chr7_3:5539132-5539151 | Msa1090640:intron | 55.0% | |
| CCTTCACTTGGCACTGTGCT+TGG | + | chr7_3:5540012-5540031 | None:intergenic | 55.0% | |
| CCAAGCACAGTGCCAAGTGA+AGG | - | chr7_3:5540009-5540028 | Msa1090640:intron | 55.0% | |
| GTCCCTTACCCTAAGCAGGC+TGG | - | chr7_3:5539770-5539789 | Msa1090640:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 5535764 | 5540324 | 5535764 | ID=Msa1090640;Name=Msa1090640 |
| chr7_3 | mRNA | 5535764 | 5540324 | 5535764 | ID=Msa1090640-mRNA-1;Parent=Msa1090640;Name=Msa1090640-mRNA-1;_AED=0.23;_eAED=0.23;_QI=141|0.87|0.88|1|0.75|0.77|9|296|272 |
| chr7_3 | exon | 5535764 | 5536120 | 5535764 | ID=Msa1090640-mRNA-1:exon:1713;Parent=Msa1090640-mRNA-1 |
| chr7_3 | exon | 5536212 | 5536332 | 5536212 | ID=Msa1090640-mRNA-1:exon:1712;Parent=Msa1090640-mRNA-1 |
| chr7_3 | exon | 5536864 | 5536957 | 5536864 | ID=Msa1090640-mRNA-1:exon:1711;Parent=Msa1090640-mRNA-1 |
| chr7_3 | exon | 5537025 | 5537102 | 5537025 | ID=Msa1090640-mRNA-1:exon:1710;Parent=Msa1090640-mRNA-1 |
| chr7_3 | exon | 5537906 | 5538042 | 5537906 | ID=Msa1090640-mRNA-1:exon:1709;Parent=Msa1090640-mRNA-1 |
| chr7_3 | exon | 5538130 | 5538168 | 5538130 | ID=Msa1090640-mRNA-1:exon:1708;Parent=Msa1090640-mRNA-1 |
| chr7_3 | exon | 5538419 | 5538623 | 5538419 | ID=Msa1090640-mRNA-1:exon:1707;Parent=Msa1090640-mRNA-1 |
| chr7_3 | exon | 5538722 | 5538792 | 5538722 | ID=Msa1090640-mRNA-1:exon:1706;Parent=Msa1090640-mRNA-1 |
| chr7_3 | exon | 5540171 | 5540324 | 5540171 | ID=Msa1090640-mRNA-1:exon:1705;Parent=Msa1090640-mRNA-1 |
| chr7_3 | five_prime_UTR | 5540184 | 5540324 | 5540184 | ID=Msa1090640-mRNA-1:five_prime_utr;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5540171 | 5540183 | 5540171 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5538722 | 5538792 | 5538722 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5538419 | 5538623 | 5538419 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5538130 | 5538168 | 5538130 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5537906 | 5538042 | 5537906 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5537025 | 5537102 | 5537025 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5536864 | 5536957 | 5536864 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5536212 | 5536332 | 5536212 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | CDS | 5536060 | 5536120 | 5536060 | ID=Msa1090640-mRNA-1:cds;Parent=Msa1090640-mRNA-1 |
| chr7_3 | three_prime_UTR | 5535764 | 5536059 | 5535764 | ID=Msa1090640-mRNA-1:three_prime_utr;Parent=Msa1090640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
