Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080030 | RHN48623.1 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 5.41e-129 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080030 | sp|Q6V9I6|HDT1_SOLCH | 42.403 | 283 | 135 | 8 | 1 | 271 | 1 | 267 | 2.64e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080030 | A0A396H772 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 2.58e-129 | 377 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1080030 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607910 | Msa1080030 | 0.818451 | 1.947235e-52 | -8.615850e-47 |
| Msa0765910 | Msa1080030 | 0.817060 | 4.011126e-52 | -8.615850e-47 |
| Msa0832340 | Msa1080030 | 0.804721 | 1.885507e-49 | -8.615850e-47 |
| Msa0434000 | Msa1080030 | 0.821866 | 3.214819e-53 | -8.615850e-47 |
| Msa0454490 | Msa1080030 | 0.807433 | 5.067291e-50 | -8.615850e-47 |
| Msa0454530 | Msa1080030 | 0.821957 | 3.062542e-53 | -8.615850e-47 |
| Msa0455760 | Msa1080030 | 0.808752 | 2.654585e-50 | -8.615850e-47 |
| Msa0989620 | Msa1080030 | 0.812840 | 3.462138e-51 | -8.615850e-47 |
| Msa1080030 | Msa1090640 | 0.949171 | 2.179233e-107 | -8.615850e-47 |
| Msa1080030 | Msa1104560 | 0.802006 | 6.885104e-49 | -8.615850e-47 |
| Msa1080030 | Msa1167340 | 0.816321 | 5.873898e-52 | -8.615850e-47 |
| Msa1080030 | Msa1167430 | 0.945590 | 2.298365e-104 | -8.615850e-47 |
| Msa1080030 | Msa1211230 | -0.802696 | 4.963258e-49 | -8.615850e-47 |
| Msa1080030 | Msa1299400 | -0.809933 | 1.481109e-50 | -8.615850e-47 |
| Msa1080030 | Msa1458750 | 0.801893 | 7.262177e-49 | -8.615850e-47 |
| Msa0844570 | Msa1080030 | 0.803586 | 3.247446e-49 | -8.615850e-47 |
| Msa0888130 | Msa1080030 | 0.812099 | 5.026563e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080030 | MtrunA17_Chr7g0265761 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 4.98e-133 | 377 |
| Msa1080030 | MtrunA17_Chr2g0320884 | 40.864 | 301 | 143 | 8 | 1 | 272 | 35 | 329 | 2.36e-42 | 147 |
| Msa1080030 | MtrunA17_Chr4g0027181 | 38.075 | 239 | 134 | 7 | 1 | 230 | 5 | 238 | 6.69e-28 | 108 |
| Msa1080030 | MtrunA17_Chr4g0027191 | 50.000 | 96 | 42 | 2 | 2 | 93 | 6 | 99 | 1.03e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080030 | AT5G03740.1 | 40.273 | 293 | 152 | 7 | 1 | 271 | 1 | 292 | 9.33e-48 | 160 |
| Msa1080030 | AT3G44750.2 | 36.996 | 273 | 137 | 6 | 1 | 271 | 1 | 240 | 7.49e-39 | 136 |
| Msa1080030 | AT3G44750.1 | 35.531 | 273 | 144 | 6 | 1 | 271 | 1 | 243 | 1.28e-36 | 130 |
| Msa1080030 | AT5G22650.2 | 34.722 | 288 | 132 | 9 | 1 | 247 | 1 | 273 | 4.36e-26 | 104 |
| Msa1080030 | AT5G22650.1 | 34.602 | 289 | 132 | 9 | 1 | 247 | 1 | 274 | 5.73e-26 | 104 |
| Msa1080030 | AT2G27840.4 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 8.79e-21 | 86.7 |
| Msa1080030 | AT2G27840.3 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 2.12e-20 | 87.0 |
| Msa1080030 | AT2G27840.1 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 3.39e-20 | 84.7 |
| Msa1080030 | AT2G27840.2 | 46.575 | 73 | 35 | 3 | 23 | 93 | 1 | 71 | 5.43e-11 | 60.8 |
Find 83 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTGCAGTCATGGAGTTT+TGG | 0.186768 | 7_2:+79285602 | Msa1080030:exon |
| GTTAGCATCTTGATCTTCTT+TGG | 0.207090 | 7_2:+79289752 | Msa1080030:three_prime_UTR |
| ATCTTGATCTTCTTTGGATC+TGG | 0.208948 | 7_2:+79289758 | Msa1080030:three_prime_UTR |
| CGCTCCCATATTTCCAGTTA+TGG | 0.260338 | 7_2:-79287329 | None:intergenic |
| CTATCCCATAACTGGAAATA+TGG | 0.264248 | 7_2:+79287324 | Msa1080030:CDS |
| TTAGGTGTTTGAGGCATATT+AGG | 0.275611 | 7_2:+79289925 | Msa1080030:three_prime_UTR |
| CATATTAGGATTGGATGTTT+TGG | 0.288217 | 7_2:+79289939 | Msa1080030:three_prime_UTR |
| CTTTATATGACAGGCATGTT+TGG | 0.291541 | 7_2:+79287161 | Msa1080030:intron |
| GGTGATCACAAGCTTCAAAT+TGG | 0.296127 | 7_2:+79287237 | Msa1080030:CDS |
| GAAAATACAGTTGTTGATTC+AGG | 0.296522 | 7_2:+79289789 | Msa1080030:three_prime_UTR |
| AACACCTGTACTTGTGAAAA+AGG | 0.297237 | 7_2:+79288870 | Msa1080030:CDS |
| TTTGGAGTCTCCTGCTTCTC+TGG | 0.303491 | 7_2:-79289513 | None:intergenic |
| TTTATATGACAGGCATGTTT+GGG | 0.313274 | 7_2:+79287162 | Msa1080030:intron |
| TGCCTTAGGTTCTCATAATA+AGG | 0.315168 | 7_2:+79289681 | Msa1080030:CDS |
| TATGGGAGCGTCTTCCTTGC+TGG | 0.325658 | 7_2:+79287342 | Msa1080030:CDS |
| CAACTCCAATCACCTGTTAC+AGG | 0.338113 | 7_2:-79289562 | None:intergenic |
| CCTTCACTTGGCACTGTGCT+TGG | 0.346567 | 7_2:-79289704 | None:intergenic |
| TCTTGATCTTCTTTGGATCT+GGG | 0.356960 | 7_2:+79289759 | Msa1080030:three_prime_UTR |
| GGGGAGGTCAGCAAGGATAA+AGG | 0.362925 | 7_2:+79287183 | Msa1080030:CDS |
| AATTTGAGCTATCCCATAAC+TGG | 0.378730 | 7_2:+79287316 | Msa1080030:CDS |
| AGTTGTTGATTCAGGAAAAC+TGG | 0.379239 | 7_2:+79289797 | Msa1080030:three_prime_UTR |
| TGATGCATTTACACCGGGTT+TGG | 0.381330 | 7_2:-79287748 | None:intergenic |
| GCAGATTTACCAGCCTGCTT+AGG | 0.386812 | 7_2:-79289474 | None:intergenic |
| TAGTCTCCAGTTACCTTCTT+CGG | 0.386819 | 7_2:-79288750 | None:intergenic |
| GCTCCCATATTTCCAGTTAT+GGG | 0.386902 | 7_2:-79287328 | None:intergenic |
| CTGGCGGTTTAGTTATGGTT+AGG | 0.396289 | 7_2:+79289907 | Msa1080030:three_prime_UTR |
| GTTTAGAGTATTATTAAACT+TGG | 0.409371 | 7_2:+79289834 | Msa1080030:three_prime_UTR |
| ACAGCTGCAATCCCTGTAAC+AGG | 0.418416 | 7_2:+79289550 | Msa1080030:CDS |
| TAGTTATGGTTAGGTGTTTG+AGG | 0.418924 | 7_2:+79289916 | Msa1080030:three_prime_UTR |
| AAGAACTAACCAGTCTTCTC+TGG | 0.427252 | 7_2:-79288907 | None:intergenic |
| TGTTACTGGCGGTTTAGTTA+TGG | 0.429442 | 7_2:+79289902 | Msa1080030:three_prime_UTR |
| TTTAAGACTGAAGATGCCTT+AGG | 0.434410 | 7_2:+79289667 | Msa1080030:CDS |
| TAACAAGCAGCCAGAGAAGC+AGG | 0.434559 | 7_2:+79289503 | Msa1080030:CDS |
| CAGATTTACCAGCCTGCTTA+GGG | 0.438934 | 7_2:-79289473 | None:intergenic |
| GCATTTACACCGGGTTTGGC+AGG | 0.449487 | 7_2:-79287744 | None:intergenic |
| CACAAGTACAGGTGTTTCCT+TGG | 0.449840 | 7_2:-79288863 | None:intergenic |
| TGTTTGAGGCATATTAGGAT+TGG | 0.452721 | 7_2:+79289930 | Msa1080030:three_prime_UTR |
| AACTTCACATACAGGGATAC+CGG | 0.456270 | 7_2:-79287213 | None:intergenic |
| TTACCAGCCTGCTTAGGGTA+AGG | 0.466162 | 7_2:-79289468 | None:intergenic |
| CTTGATCTTCTTTGGATCTG+GGG | 0.466662 | 7_2:+79289760 | Msa1080030:three_prime_UTR |
| GAAGATATTATACTTGCTAA+TGG | 0.476177 | 7_2:+79287630 | Msa1080030:CDS |
| GGGAGGTCAGCAAGGATAAA+GGG | 0.482905 | 7_2:+79287184 | Msa1080030:CDS |
| GCACTCTCTCTCTGCAGTCA+TGG | 0.496600 | 7_2:+79285594 | Msa1080030:exon |
| TATCCCATAACTGGAAATAT+GGG | 0.497848 | 7_2:+79287325 | Msa1080030:CDS |
| GATCACCAAACTTCACATAC+AGG | 0.505258 | 7_2:-79287221 | None:intergenic |
| CTGTAATCTCCACTAGACTT+TGG | 0.505848 | 7_2:-79289531 | None:intergenic |
| CCGATGAAATGTGGATAAGC+TGG | 0.506704 | 7_2:-79287054 | None:intergenic |
| GTATCCCTGTATGTGAAGTT+TGG | 0.511130 | 7_2:+79287216 | Msa1080030:CDS |
| TAGTGTCCCTTACCCTAAGC+AGG | 0.513510 | 7_2:+79289461 | Msa1080030:CDS |
| GGCCTTATTATGAGAACCTA+AGG | 0.516695 | 7_2:-79289683 | None:intergenic |
| GATTCATCTGATGCTAGTAC+TGG | 0.522501 | 7_2:+79287816 | Msa1080030:CDS |
| TTTGTTACTCCAGAGAAGAC+TGG | 0.525269 | 7_2:+79288898 | Msa1080030:CDS |
| GTCCCTTACCCTAAGCAGGC+TGG | 0.535334 | 7_2:+79289465 | Msa1080030:CDS |
| AATCAGAAGGATGCTAGTAC+TGG | 0.537632 | 7_2:+79287783 | Msa1080030:CDS |
| TTAAGATCAAATTCTGACGT+TGG | 0.541262 | 7_2:+79289866 | Msa1080030:three_prime_UTR |
| TTATTTGAACGAAATTCGAA+TGG | 0.547131 | 7_2:-79285503 | None:intergenic |
| TACCAGCCTGCTTAGGGTAA+GGG | 0.548023 | 7_2:-79289467 | None:intergenic |
| AGCTAACAAAACCCTTCACT+TGG | 0.555690 | 7_2:-79289716 | None:intergenic |
| CCAAGCACAGTGCCAAGTGA+AGG | 0.555760 | 7_2:+79289704 | Msa1080030:CDS |
| GTCGTTTAGCCCATGGCGAA+TGG | 0.558159 | 7_2:+79288672 | Msa1080030:intron |
| TTTAGATACTGATTCTGAAG+AGG | 0.569513 | 7_2:+79287608 | Msa1080030:intron |
| CTGAAGGGAGCAACAAGAGG+AGG | 0.570018 | 7_2:+79288827 | Msa1080030:CDS |
| CCAGCTTATCCACATTTCAT+CGG | 0.582062 | 7_2:+79287054 | Msa1080030:CDS |
| ATCTGATGCTAGTGAAGATG+AGG | 0.588334 | 7_2:+79287854 | Msa1080030:CDS |
| GTAGGGAAACCTGCCAAACC+CGG | 0.592566 | 7_2:+79287735 | Msa1080030:intron |
| TGACAAGGAGACTCCGAAGA+AGG | 0.592738 | 7_2:+79288737 | Msa1080030:CDS |
| CAGGAGACTCCAAAGTCTAG+TGG | 0.603055 | 7_2:+79289522 | Msa1080030:CDS |
| CAAGCACAGTGCCAAGTGAA+GGG | 0.609527 | 7_2:+79289705 | Msa1080030:exon |
| AACTCCAATCACCTGTTACA+GGG | 0.611246 | 7_2:-79289561 | None:intergenic |
| GAGGGATGCTGAATCTTCCA+AGG | 0.612820 | 7_2:+79288846 | Msa1080030:CDS |
| TGAAGGGAGCAACAAGAGGA+GGG | 0.614862 | 7_2:+79288828 | Msa1080030:CDS |
| AGACTGAAGGGAGCAACAAG+AGG | 0.615166 | 7_2:+79288824 | Msa1080030:intron |
| AAGCATATACCGATGAAATG+TGG | 0.617686 | 7_2:-79287063 | None:intergenic |
| ACTTCACATACAGGGATACC+GGG | 0.620641 | 7_2:-79287212 | None:intergenic |
| TTAGGTGTCGAGGTAAAACA+TGG | 0.629801 | 7_2:+79287001 | Msa1080030:intron |
| AAAACATGGTGAACCACACA+AGG | 0.630125 | 7_2:+79287015 | Msa1080030:CDS |
| TATATGACAGGCATGTTTGG+GGG | 0.631765 | 7_2:+79287164 | Msa1080030:intron |
| TTATATGACAGGCATGTTTG+GGG | 0.632570 | 7_2:+79287163 | Msa1080030:intron |
| ATCACCAAACTTCACATACA+GGG | 0.632725 | 7_2:-79287220 | None:intergenic |
| CAAGGATAAAGGGAGTGACC+CGG | 0.634157 | 7_2:+79287194 | Msa1080030:CDS |
| AAGCGATGAAGATTCTGACA+AGG | 0.637276 | 7_2:+79288722 | Msa1080030:CDS |
| ACCAAATCAAAAGATGTCTG+AGG | 0.650289 | 7_2:-79287282 | None:intergenic |
| TTATGGTCACGTGTTACTGG+CGG | 0.671148 | 7_2:+79289891 | Msa1080030:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTAAAATATTTAAT+TGG | - | chr7_2:79288507-79288526 | None:intergenic | 0.0% |
| !!! | TTTTTTTGAAAGAAATTTTT+TGG | - | chr7_2:79288114-79288133 | None:intergenic | 10.0% |
| !!! | AATTTTAAATTTTAAGATTC+CGG | + | chr7_2:79289968-79289987 | Msa1080030:three_prime_UTR | 10.0% |
| !!! | TGTTTTTGTTTTTTTCAAAA+AGG | - | chr7_2:79285712-79285731 | None:intergenic | 15.0% |
| !! | ATGAAAAACTAAATAACAAA+TGG | - | chr7_2:79286703-79286722 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAGTTTTTCATT+TGG | + | chr7_2:79286704-79286723 | Msa1080030:intron | 15.0% |
| !!! | TAATAATATGGTTTTTAAGA+TGG | + | chr7_2:79286859-79286878 | Msa1080030:intron | 15.0% |
| !!! | AATAATATGGTTTTTAAGAT+GGG | + | chr7_2:79286860-79286879 | Msa1080030:intron | 15.0% |
| !! | CAGTATAAAATAGTATTAAA+AGG | - | chr7_2:79287399-79287418 | None:intergenic | 15.0% |
| !!! | ATTGTTCTAAATATTTATGT+AGG | + | chr7_2:79287717-79287736 | Msa1080030:intron | 15.0% |
| !!! | TTGTTCTAAATATTTATGTA+GGG | + | chr7_2:79287718-79287737 | Msa1080030:intron | 15.0% |
| !!! | TTTCAATATATAATGGATAT+TGG | + | chr7_2:79287901-79287920 | Msa1080030:intron | 15.0% |
| !! | TAAAAGAAATCAAAACAATT+TGG | - | chr7_2:79288341-79288360 | None:intergenic | 15.0% |
| !! | TTAATTTAATGATTGAATCA+GGG | + | chr7_2:79288530-79288549 | Msa1080030:intron | 15.0% |
| !! | ACTCATATTAAATTCAAATT+CGG | - | chr7_2:79288796-79288815 | None:intergenic | 15.0% |
| !! | AAAAATGTAAAGTGATAGAA+AGG | - | chr7_2:79285647-79285666 | None:intergenic | 20.0% |
| !! | TTTCATGTATAAATATCGTT+AGG | + | chr7_2:79285775-79285794 | Msa1080030:intron | 20.0% |
| !! | TTAGTAATACATGACTAAAA+CGG | - | chr7_2:79285850-79285869 | None:intergenic | 20.0% |
| !! | AAACATGCTTAAACAAAATT+AGG | - | chr7_2:79285937-79285956 | None:intergenic | 20.0% |
| !! | AAACTAAATAACAAATGGTA+GGG | - | chr7_2:79286698-79286717 | None:intergenic | 20.0% |
| !! | AAAACTAAATAACAAATGGT+AGG | - | chr7_2:79286699-79286718 | None:intergenic | 20.0% |
| !! | ATTTGGTCAATTTACAAAAA+AGG | + | chr7_2:79286721-79286740 | Msa1080030:intron | 20.0% |
| !!! | CGTTAATGTTTTTGTATAAA+TGG | + | chr7_2:79287130-79287149 | Msa1080030:intron | 20.0% |
| !!! | TTATTAGATTGCATTTTTGT+CGG | - | chr7_2:79287446-79287465 | None:intergenic | 20.0% |
| !! | AAGATTAAAGAATGTAGTTA+AGG | - | chr7_2:79287489-79287508 | None:intergenic | 20.0% |
| !!! | AAGTGGATTTCAATATATAA+TGG | + | chr7_2:79287894-79287913 | Msa1080030:intron | 20.0% |
| !! | TTGAATTAAATGAAATGCTA+TGG | + | chr7_2:79288014-79288033 | Msa1080030:intron | 20.0% |
| !! | TATGGAAAAATACAAATGTA+GGG | + | chr7_2:79288032-79288051 | Msa1080030:intron | 20.0% |
| !! | ATGTTTGTACCAAAAATTAA+TGG | + | chr7_2:79288136-79288155 | Msa1080030:intron | 20.0% |
| !! | GTTAATTTAATGATTGAATC+AGG | + | chr7_2:79288529-79288548 | Msa1080030:intron | 20.0% |
| !! | TAATTTAATGATTGAATCAG+GGG | + | chr7_2:79288531-79288550 | Msa1080030:intron | 20.0% |
| !! | TCAATAAAAAATTCAGTACT+CGG | - | chr7_2:79288608-79288627 | None:intergenic | 20.0% |
| !!! | AGTACTGAATTTTTTATTGA+AGG | + | chr7_2:79288608-79288627 | Msa1080030:intron | 20.0% |
| !!! | ATTCATCTTTTAGTTTGTTT+TGG | + | chr7_2:79288643-79288662 | Msa1080030:intron | 20.0% |
| !!! | GTTTAGAGTATTATTAAACT+TGG | + | chr7_2:79289834-79289853 | Msa1080030:three_prime_UTR | 20.0% |
| !! | AAATTCGAATGGATCTTTTT+GGG | - | chr7_2:79285495-79285514 | None:intergenic | 25.0% |
| ! | TTATTTGAACGAAATTCGAA+TGG | - | chr7_2:79285506-79285525 | None:intergenic | 25.0% |
| !!! | TTGCAGTTTTTGGATAAAAA+TGG | + | chr7_2:79285800-79285819 | Msa1080030:intron | 25.0% |
| ! | TAGTAATACATGACTAAAAC+GGG | - | chr7_2:79285849-79285868 | None:intergenic | 25.0% |
| ! | TACAGATTATTGTCAAATAG+CGG | - | chr7_2:79286051-79286070 | None:intergenic | 25.0% |
| !! | TGTTTCTATTGGAAAAAATG+TGG | + | chr7_2:79286233-79286252 | Msa1080030:intron | 25.0% |
| ! | AATGTGGTAGATTATCTTAT+TGG | + | chr7_2:79286249-79286268 | Msa1080030:intron | 25.0% |
| !! | ATCAACTATTCTCAGTTTTA+TGG | - | chr7_2:79286354-79286373 | None:intergenic | 25.0% |
| ! | AACTAAATAACAAATGGTAG+GGG | - | chr7_2:79286697-79286716 | None:intergenic | 25.0% |
| ! | CAATGTAATAGAAACTAAAG+AGG | - | chr7_2:79286802-79286821 | None:intergenic | 25.0% |
| ! | ATATAAAACTCCTTTCATGT+GGG | - | chr7_2:79286828-79286847 | None:intergenic | 25.0% |
| ! | AGGATAAAAAAATCCAAAGA+AGG | - | chr7_2:79286934-79286953 | None:intergenic | 25.0% |
| ! | TCCTGTTGCTAAATTAATAT+TGG | + | chr7_2:79286950-79286969 | Msa1080030:intron | 25.0% |
| ! | TCCAATATTAATTTAGCAAC+AGG | - | chr7_2:79286954-79286973 | None:intergenic | 25.0% |
| ! | CAAAAACATTAACGATTCAA+TGG | - | chr7_2:79287124-79287143 | None:intergenic | 25.0% |
| !!! | ACATCTTTTGATTTGGTTTT+TGG | + | chr7_2:79287288-79287307 | Msa1080030:CDS | 25.0% |
| !!! | CATCTTTTGATTTGGTTTTT+GGG | + | chr7_2:79287289-79287308 | Msa1080030:CDS | 25.0% |
| !! | ATTTTTAATCGAATGTGAAC+AGG | + | chr7_2:79287365-79287384 | Msa1080030:intron | 25.0% |
| ! | TTTACTGATGAATATTCTGA+TGG | + | chr7_2:79287508-79287527 | Msa1080030:intron | 25.0% |
| !! | GAAGATATTATACTTGCTAA+TGG | + | chr7_2:79287630-79287649 | Msa1080030:CDS | 25.0% |
| !! | TATTTAGAACAATATGACAC+AGG | - | chr7_2:79287710-79287729 | None:intergenic | 25.0% |
| ! | AAAACAGAAAAAGAATCAGA+AGG | + | chr7_2:79287770-79287789 | Msa1080030:CDS | 25.0% |
| ! | TAACTGTATAATCTAGAAAG+TGG | + | chr7_2:79287877-79287896 | Msa1080030:intron | 25.0% |
| !!! | CATCGAACAATTTTGTTTAT+CGG | - | chr7_2:79287970-79287989 | None:intergenic | 25.0% |
| ! | CTATGGAAAAATACAAATGT+AGG | + | chr7_2:79288031-79288050 | Msa1080030:intron | 25.0% |
| !! | GTGGTAAAACCATTAATTTT+TGG | - | chr7_2:79288148-79288167 | None:intergenic | 25.0% |
| !!! | ATAATCCTGTTTTTCTTGAT+CGG | + | chr7_2:79288447-79288466 | Msa1080030:intron | 25.0% |
| ! | AATTTAATGATTGAATCAGG+GGG | + | chr7_2:79288532-79288551 | Msa1080030:intron | 25.0% |
| ! | TTTAATATACGATGTAGACT+TGG | + | chr7_2:79288577-79288596 | Msa1080030:intron | 25.0% |
| ! | AAACTAACAAACAAAGTACA+GGG | - | chr7_2:79288935-79288954 | None:intergenic | 25.0% |
| ! | AAAACTAACAAACAAAGTAC+AGG | - | chr7_2:79288936-79288955 | None:intergenic | 25.0% |
| ! | GTCATCTAGATAGATTTATA+AGG | + | chr7_2:79289028-79289047 | Msa1080030:intron | 25.0% |
| !! | AGTTTAACTTTATTCAAGTC+CGG | - | chr7_2:79289203-79289222 | None:intergenic | 25.0% |
| ! | AAAATATTTAACACATGGTC+AGG | - | chr7_2:79289227-79289246 | None:intergenic | 25.0% |
| ! | GTCAGAAAATATTTAACACA+TGG | - | chr7_2:79289232-79289251 | None:intergenic | 25.0% |
| !! | ACGAGAATTATGATATTTTC+AGG | + | chr7_2:79289429-79289448 | Msa1080030:intron | 25.0% |
| !!! | AGAATTATGATATTTTCAGG+TGG | + | chr7_2:79289432-79289451 | Msa1080030:intron | 25.0% |
| !! | AGTTGTCTTTTTATATCTGT+TGG | + | chr7_2:79289580-79289599 | Msa1080030:intron | 25.0% |
| ! | GAAATTCGAATGGATCTTTT+TGG | - | chr7_2:79285496-79285515 | None:intergenic | 30.0% |
| AATGTAAAGTGATAGAAAGG+AGG | - | chr7_2:79285644-79285663 | None:intergenic | 30.0% | |
| AGAATCGCATATAAAACGAT+AGG | + | chr7_2:79285748-79285767 | Msa1080030:intron | 30.0% | |
| !! | CAGTTTTTGGATAAAAATGG+CGG | + | chr7_2:79285803-79285822 | Msa1080030:intron | 30.0% |
| TTGTTAAATAGCAACTACAG+CGG | - | chr7_2:79286132-79286151 | None:intergenic | 30.0% | |
| AACAAAACAAAAAAACGTCG+AGG | - | chr7_2:79286191-79286210 | None:intergenic | 30.0% | |
| ! | TTTTTCCAATAGAAACATCG+AGG | - | chr7_2:79286230-79286249 | None:intergenic | 30.0% |
| GTTCATTTCAGAGATTAGAT+TGG | - | chr7_2:79286299-79286318 | None:intergenic | 30.0% | |
| !!! | TGGGAGTTTTATTACACTTT+CGG | + | chr7_2:79286433-79286452 | Msa1080030:intron | 30.0% |
| CATTGTCTTAGACCAATAAA+AGG | + | chr7_2:79286460-79286479 | Msa1080030:intron | 30.0% | |
| GTTACAAAATCAGAGACATA+AGG | - | chr7_2:79286535-79286554 | None:intergenic | 30.0% | |
| !! | GTTAGTTCTGTTATAGAACT+CGG | + | chr7_2:79286613-79286632 | Msa1080030:intron | 30.0% |
| ! | TTTAGAGTAAGTGAACTAAC+TGG | - | chr7_2:79286666-79286685 | None:intergenic | 30.0% |
| TATAAAACTCCTTTCATGTG+GGG | - | chr7_2:79286827-79286846 | None:intergenic | 30.0% | |
| GATATAAAACTCCTTTCATG+TGG | - | chr7_2:79286829-79286848 | None:intergenic | 30.0% | |
| !! | TGAAAGGAGTTTTATATCAC+TGG | + | chr7_2:79286831-79286850 | Msa1080030:intron | 30.0% |
| !! | GAAAGGAGTTTTATATCACT+GGG | + | chr7_2:79286832-79286851 | Msa1080030:intron | 30.0% |
| TCACTGGGTTGTTAATAATA+TGG | + | chr7_2:79286847-79286866 | Msa1080030:intron | 30.0% | |
| CAATATTGTGTTTCCTTCTT+TGG | + | chr7_2:79286918-79286937 | Msa1080030:intron | 30.0% | |
| ! | TCACAAATCACAATCCTTTT+AGG | + | chr7_2:79286983-79287002 | Msa1080030:intron | 30.0% |
| GTCTCAAATCTTTATATGAC+AGG | + | chr7_2:79287152-79287171 | Msa1080030:intron | 30.0% | |
| TTTATATGACAGGCATGTTT+GGG | + | chr7_2:79287162-79287181 | Msa1080030:intron | 30.0% | |
| !!! | TTTTGATTTGGTTTTTGGGA+AGG | + | chr7_2:79287293-79287312 | Msa1080030:CDS | 30.0% |
| TATCCCATAACTGGAAATAT+GGG | + | chr7_2:79287325-79287344 | Msa1080030:CDS | 30.0% | |
| ATTCGATTAAAAATCCAGCA+AGG | - | chr7_2:79287359-79287378 | None:intergenic | 30.0% | |
| !! | TTTAGATACTGATTCTGAAG+AGG | + | chr7_2:79287608-79287627 | Msa1080030:intron | 30.0% |
| GACAATAGAAATGCATAAGA+TGG | - | chr7_2:79287673-79287692 | None:intergenic | 30.0% | |
| CGATAAACAAAATTGTTCGA+TGG | + | chr7_2:79287968-79287987 | Msa1080030:intron | 30.0% | |
| TTTAATTCAATAACAGCAGC+TGG | - | chr7_2:79288004-79288023 | None:intergenic | 30.0% | |
| AATACTAATTGGGTAGAAGA+AGG | + | chr7_2:79288062-79288081 | Msa1080030:intron | 30.0% | |
| ACTTACAAAATAGATGAAGC+TGG | + | chr7_2:79288229-79288248 | Msa1080030:intron | 30.0% | |
| !! | AAACACCTTCACTTTTAAGT+GGG | - | chr7_2:79288303-79288322 | None:intergenic | 30.0% |
| !! | AAAACACCTTCACTTTTAAG+TGG | - | chr7_2:79288304-79288323 | None:intergenic | 30.0% |
| TCAAGAAAAACAGGATTATG+AGG | - | chr7_2:79288446-79288465 | None:intergenic | 30.0% | |
| GATAAGAGTTATCAACTATG+TGG | + | chr7_2:79288480-79288499 | Msa1080030:intron | 30.0% | |
| !!! | TGAGTTTTGTTTTAGACTGA+AGG | + | chr7_2:79288811-79288830 | Msa1080030:intron | 30.0% |
| !!! | GAGTTTTGTTTTAGACTGAA+GGG | + | chr7_2:79288812-79288831 | Msa1080030:intron | 30.0% |
| AACTAACAAACAAAGTACAG+GGG | - | chr7_2:79288934-79288953 | None:intergenic | 30.0% | |
| TTATGCAATAACAGTGCAAA+GGG | - | chr7_2:79289075-79289094 | None:intergenic | 30.0% | |
| TTTATGCAATAACAGTGCAA+AGG | - | chr7_2:79289076-79289095 | None:intergenic | 30.0% | |
| TGCATAAAATTGCATTGTTG+TGG | + | chr7_2:79289088-79289107 | Msa1080030:intron | 30.0% | |
| ! | TTAGTCGCAATTTTGTCTTT+TGG | + | chr7_2:79289264-79289283 | Msa1080030:intron | 30.0% |
| ATTAACAAAGCAGAACTGAA+AGG | + | chr7_2:79289401-79289420 | Msa1080030:intron | 30.0% | |
| !!! | GCAATTTTTATTTTGACTGC+AGG | + | chr7_2:79289641-79289660 | Msa1080030:intron | 30.0% |
| ! | GAATCAACAACTGTATTTTC+AGG | - | chr7_2:79289789-79289808 | None:intergenic | 30.0% |
| !! | GAAAATACAGTTGTTGATTC+AGG | + | chr7_2:79289789-79289808 | Msa1080030:three_prime_UTR | 30.0% |
| TTAAGATCAAATTCTGACGT+TGG | + | chr7_2:79289866-79289885 | Msa1080030:three_prime_UTR | 30.0% | |
| !!! | AAATTCTGACGTTGGTTTTA+TGG | + | chr7_2:79289874-79289893 | Msa1080030:three_prime_UTR | 30.0% |
| ! | CATATTAGGATTGGATGTTT+TGG | + | chr7_2:79289939-79289958 | Msa1080030:three_prime_UTR | 30.0% |
| ! | TCCTATTCAATTTTTGCTTC+TGG | - | chr7_2:79289994-79290013 | None:intergenic | 30.0% |
| !! | TCTTTTTGGGCTTAGTTGAA+TGG | - | chr7_2:79285482-79285501 | None:intergenic | 35.0% |
| TGATAGAAAGGAGGAAGAAA+CGG | - | chr7_2:79285635-79285654 | None:intergenic | 35.0% | |
| ! | TCGTTAGGTTTTGCAGTTTT+TGG | + | chr7_2:79285790-79285809 | Msa1080030:intron | 35.0% |
| CATGAGGATGATGATAGTTA+GGG | - | chr7_2:79285874-79285893 | None:intergenic | 35.0% | |
| TCATGAGGATGATGATAGTT+AGG | - | chr7_2:79285875-79285894 | None:intergenic | 35.0% | |
| !! | AGTTTTGTGGAGTTTTCATG+AGG | - | chr7_2:79285890-79285909 | None:intergenic | 35.0% |
| ! | AGTAAGCGCAAAAAGTTTTG+TGG | - | chr7_2:79285903-79285922 | None:intergenic | 35.0% |
| CAGATTGTTAAAATTCCGCT+AGG | + | chr7_2:79286000-79286019 | Msa1080030:intron | 35.0% | |
| ! | AAAGACCTCGATGTTTCTAT+TGG | + | chr7_2:79286222-79286241 | Msa1080030:intron | 35.0% |
| !!! | GGGAGTTTTATTACACTTTC+GGG | + | chr7_2:79286434-79286453 | Msa1080030:intron | 35.0% |
| !!! | GGAGTTTTATTACACTTTCG+GGG | + | chr7_2:79286435-79286454 | Msa1080030:intron | 35.0% |
| TTAGACCAATAAAAGGTCAC+TGG | + | chr7_2:79286467-79286486 | Msa1080030:intron | 35.0% | |
| ! | TTCAACCAGTGACCTTTTAT+TGG | - | chr7_2:79286475-79286494 | None:intergenic | 35.0% |
| AAAAGACAGAAAGTGAAGTG+CGG | - | chr7_2:79286775-79286794 | None:intergenic | 35.0% | |
| !! | TGGATAAGCTGGTTATTTTC+TGG | - | chr7_2:79287046-79287065 | None:intergenic | 35.0% |
| AAGCATATACCGATGAAATG+TGG | - | chr7_2:79287066-79287085 | None:intergenic | 35.0% | |
| CTTTATATGACAGGCATGTT+TGG | + | chr7_2:79287161-79287180 | Msa1080030:intron | 35.0% | |
| TTATATGACAGGCATGTTTG+GGG | + | chr7_2:79287163-79287182 | Msa1080030:intron | 35.0% | |
| ATCACCAAACTTCACATACA+GGG | - | chr7_2:79287223-79287242 | None:intergenic | 35.0% | |
| !! | TCCTCAGACATCTTTTGATT+TGG | + | chr7_2:79287281-79287300 | Msa1080030:CDS | 35.0% |
| ACCAAATCAAAAGATGTCTG+AGG | - | chr7_2:79287285-79287304 | None:intergenic | 35.0% | |
| AATTTGAGCTATCCCATAAC+TGG | + | chr7_2:79287316-79287335 | Msa1080030:CDS | 35.0% | |
| CTATCCCATAACTGGAAATA+TGG | + | chr7_2:79287324-79287343 | Msa1080030:CDS | 35.0% | |
| !!! | TGTTTTGATGCATTTACACC+GGG | - | chr7_2:79287756-79287775 | None:intergenic | 35.0% |
| !!! | CTGTTTTGATGCATTTACAC+CGG | - | chr7_2:79287757-79287776 | None:intergenic | 35.0% |
| ! | TATCGGCACAACATCTATTT+TGG | - | chr7_2:79287953-79287972 | None:intergenic | 35.0% |
| AAAATACAAATGTAGGGCAC+TGG | + | chr7_2:79288038-79288057 | Msa1080030:intron | 35.0% | |
| TGCTCTCATATATCTAACAG+TGG | - | chr7_2:79288167-79288186 | None:intergenic | 35.0% | |
| ! | AAAGCATTCCTGAGATGATT+CGG | + | chr7_2:79288197-79288216 | Msa1080030:intron | 35.0% |
| ACAAAATAGATGAAGCTGGT+CGG | + | chr7_2:79288233-79288252 | Msa1080030:intron | 35.0% | |
| ACATTCCCACTTAAAAGTGA+AGG | + | chr7_2:79288295-79288314 | Msa1080030:intron | 35.0% | |
| ACAGGATTATGAGGACAATT+TGG | - | chr7_2:79288437-79288456 | None:intergenic | 35.0% | |
| !!! | TTATTTTGACCATTCGCCAT+GGG | - | chr7_2:79288684-79288703 | None:intergenic | 35.0% |
| !!! | TTTATTTTGACCATTCGCCA+TGG | - | chr7_2:79288685-79288704 | None:intergenic | 35.0% |
| AACACCTGTACTTGTGAAAA+AGG | + | chr7_2:79288870-79288889 | Msa1080030:CDS | 35.0% | |
| !! | TTTGCCTTTTTCACAAGTAC+AGG | - | chr7_2:79288877-79288896 | None:intergenic | 35.0% |
| TTAGTGTCAAACAAGGCTTA+GGG | - | chr7_2:79288989-79289008 | None:intergenic | 35.0% | |
| ATTAGTGTCAAACAAGGCTT+AGG | - | chr7_2:79288990-79289009 | None:intergenic | 35.0% | |
| CACAACATTAGTGTCAAACA+AGG | - | chr7_2:79288996-79289015 | None:intergenic | 35.0% | |
| AACTACTTTGTGACTTATGC+CGG | + | chr7_2:79289181-79289200 | Msa1080030:intron | 35.0% | |
| !!! | TTATGATATTTTCAGGTGGC+AGG | + | chr7_2:79289436-79289455 | Msa1080030:intron | 35.0% |
| TAAGTGTGTAAAGAACGATG+AGG | - | chr7_2:79289612-79289631 | None:intergenic | 35.0% | |
| ! | TTTAAGACTGAAGATGCCTT+AGG | + | chr7_2:79289667-79289686 | Msa1080030:CDS | 35.0% |
| TGCCTTAGGTTCTCATAATA+AGG | + | chr7_2:79289681-79289700 | Msa1080030:CDS | 35.0% | |
| GTTAGCATCTTGATCTTCTT+TGG | + | chr7_2:79289752-79289771 | Msa1080030:three_prime_UTR | 35.0% | |
| ATCTTGATCTTCTTTGGATC+TGG | + | chr7_2:79289758-79289777 | Msa1080030:three_prime_UTR | 35.0% | |
| TCTTGATCTTCTTTGGATCT+GGG | + | chr7_2:79289759-79289778 | Msa1080030:three_prime_UTR | 35.0% | |
| !! | AGTTGTTGATTCAGGAAAAC+TGG | + | chr7_2:79289797-79289816 | Msa1080030:three_prime_UTR | 35.0% |
| TAGTTATGGTTAGGTGTTTG+AGG | + | chr7_2:79289916-79289935 | Msa1080030:three_prime_UTR | 35.0% | |
| ! | TTAGGTGTTTGAGGCATATT+AGG | + | chr7_2:79289925-79289944 | Msa1080030:three_prime_UTR | 35.0% |
| ! | TGTTTGAGGCATATTAGGAT+TGG | + | chr7_2:79289930-79289949 | Msa1080030:three_prime_UTR | 35.0% |
| ! | ATTCAATTTTTGCTTCTGGC+CGG | - | chr7_2:79289990-79290009 | None:intergenic | 35.0% |
| GCCAGAAGCAAAAATTGAAT+AGG | + | chr7_2:79289990-79290009 | Msa1080030:three_prime_UTR | 35.0% | |
| TTGTCAAATAGCGGCTATAC+TGG | - | chr7_2:79286042-79286061 | None:intergenic | 40.0% | |
| AGTGAATCGCAGAGTAATAG+TGG | + | chr7_2:79286080-79286099 | Msa1080030:intron | 40.0% | |
| AGTCCAAATTCCGCTATGAT+AGG | + | chr7_2:79286105-79286124 | Msa1080030:intron | 40.0% | |
| GTCCAAATTCCGCTATGATA+GGG | + | chr7_2:79286106-79286125 | Msa1080030:intron | 40.0% | |
| AGTTCCTACAATCATCTCGA+AGG | + | chr7_2:79286403-79286422 | Msa1080030:intron | 40.0% | |
| GTTCCTACAATCATCTCGAA+GGG | + | chr7_2:79286404-79286423 | Msa1080030:intron | 40.0% | |
| ATCATCTCGAAGGGACTAAA+TGG | + | chr7_2:79286413-79286432 | Msa1080030:intron | 40.0% | |
| TCATCTCGAAGGGACTAAAT+GGG | + | chr7_2:79286414-79286433 | Msa1080030:intron | 40.0% | |
| GAGACATAAGGATCGAATAG+AGG | - | chr7_2:79286523-79286542 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTGAAGTAGCCAAT+TGG | + | chr7_2:79286632-79286651 | Msa1080030:intron | 40.0% |
| TACATTGTACCCCACATGAA+AGG | + | chr7_2:79286815-79286834 | Msa1080030:intron | 40.0% | |
| ! | GTTTTACCTCGACACCTAAA+AGG | - | chr7_2:79287000-79287019 | None:intergenic | 40.0% |
| !! | TTAGGTGTCGAGGTAAAACA+TGG | + | chr7_2:79287001-79287020 | Msa1080030:intron | 40.0% |
| AAAACATGGTGAACCACACA+AGG | + | chr7_2:79287015-79287034 | Msa1080030:CDS | 40.0% | |
| !!! | TTTTCTGGAACAACCTTGTG+TGG | - | chr7_2:79287031-79287050 | None:intergenic | 40.0% |
| CCAGCTTATCCACATTTCAT+CGG | + | chr7_2:79287054-79287073 | Msa1080030:CDS | 40.0% | |
| TATATGACAGGCATGTTTGG+GGG | + | chr7_2:79287164-79287183 | Msa1080030:intron | 40.0% | |
| AACTTCACATACAGGGATAC+CGG | - | chr7_2:79287216-79287235 | None:intergenic | 40.0% | |
| GTATCCCTGTATGTGAAGTT+TGG | + | chr7_2:79287216-79287235 | Msa1080030:CDS | 40.0% | |
| GATCACCAAACTTCACATAC+AGG | - | chr7_2:79287224-79287243 | None:intergenic | 40.0% | |
| GGTGATCACAAGCTTCAAAT+TGG | + | chr7_2:79287237-79287256 | Msa1080030:CDS | 40.0% | |
| GCTCCCATATTTCCAGTTAT+GGG | - | chr7_2:79287331-79287350 | None:intergenic | 40.0% | |
| AATCAGAAGGATGCTAGTAC+TGG | + | chr7_2:79287783-79287802 | Msa1080030:CDS | 40.0% | |
| GATTCATCTGATGCTAGTAC+TGG | + | chr7_2:79287816-79287835 | Msa1080030:CDS | 40.0% | |
| ATCTGATGCTAGTGAAGATG+AGG | + | chr7_2:79287854-79287873 | Msa1080030:CDS | 40.0% | |
| !! | AGGGCACTGGTAATACTAAT+TGG | + | chr7_2:79288051-79288070 | Msa1080030:intron | 40.0% |
| !! | GGGCACTGGTAATACTAATT+GGG | + | chr7_2:79288052-79288071 | Msa1080030:intron | 40.0% |
| CTAATTGGGTAGAAGAAGGT+AGG | + | chr7_2:79288066-79288085 | Msa1080030:intron | 40.0% | |
| GTAGAAGAAGGTAGGATACT+TGG | + | chr7_2:79288074-79288093 | Msa1080030:intron | 40.0% | |
| AAGCATTCCTGAGATGATTC+GGG | + | chr7_2:79288198-79288217 | Msa1080030:intron | 40.0% | |
| CAAAATAGATGAAGCTGGTC+GGG | + | chr7_2:79288234-79288253 | Msa1080030:intron | 40.0% | |
| AAAATAGATGAAGCTGGTCG+GGG | + | chr7_2:79288235-79288254 | Msa1080030:intron | 40.0% | |
| CATGACCGATCAAGAAAAAC+AGG | - | chr7_2:79288455-79288474 | None:intergenic | 40.0% | |
| AAGCGATGAAGATTCTGACA+AGG | + | chr7_2:79288722-79288741 | Msa1080030:CDS | 40.0% | |
| TAGTCTCCAGTTACCTTCTT+CGG | - | chr7_2:79288753-79288772 | None:intergenic | 40.0% | |
| TTTGTTACTCCAGAGAAGAC+TGG | + | chr7_2:79288898-79288917 | Msa1080030:CDS | 40.0% | |
| AAGAACTAACCAGTCTTCTC+TGG | - | chr7_2:79288910-79288929 | None:intergenic | 40.0% | |
| TAGTGTCAAACAAGGCTTAG+GGG | - | chr7_2:79288988-79289007 | None:intergenic | 40.0% | |
| AAGTGGTGAGAGAACATTGT+GGG | - | chr7_2:79289126-79289145 | None:intergenic | 40.0% | |
| ATGGAGCAGCTATTGCTTTA+TGG | + | chr7_2:79289155-79289174 | Msa1080030:intron | 40.0% | |
| GACTGATTGTTTAACCTCGT+TGG | + | chr7_2:79289350-79289369 | Msa1080030:intron | 40.0% | |
| ACAAATTAACGAGTCCAACG+AGG | - | chr7_2:79289367-79289386 | None:intergenic | 40.0% | |
| CTGTAATCTCCACTAGACTT+TGG | - | chr7_2:79289534-79289553 | None:intergenic | 40.0% | |
| AACTCCAATCACCTGTTACA+GGG | - | chr7_2:79289564-79289583 | None:intergenic | 40.0% | |
| !! | GGCCTTATTATGAGAACCTA+AGG | - | chr7_2:79289686-79289705 | None:intergenic | 40.0% |
| AGCTAACAAAACCCTTCACT+TGG | - | chr7_2:79289719-79289738 | None:intergenic | 40.0% | |
| CTTGATCTTCTTTGGATCTG+GGG | + | chr7_2:79289760-79289779 | Msa1080030:three_prime_UTR | 40.0% | |
| ! | GTTTTATGGTCACGTGTTAC+TGG | + | chr7_2:79289888-79289907 | Msa1080030:three_prime_UTR | 40.0% |
| TGTTACTGGCGGTTTAGTTA+TGG | + | chr7_2:79289902-79289921 | Msa1080030:three_prime_UTR | 40.0% | |
| ! | TCTCTGCAGTCATGGAGTTT+TGG | + | chr7_2:79285602-79285621 | Msa1080030:exon | 45.0% |
| ! | CTCTGCAGTCATGGAGTTTT+GGG | + | chr7_2:79285603-79285622 | Msa1080030:exon | 45.0% |
| ! | TCTGCAGTCATGGAGTTTTG+GGG | + | chr7_2:79285604-79285623 | Msa1080030:exon | 45.0% |
| CAATGTTGTGCAATCGCTGT+TGG | + | chr7_2:79285977-79285996 | Msa1080030:intron | 45.0% | |
| TCTGTAACACTACAGCCTAG+CGG | - | chr7_2:79286018-79286037 | None:intergenic | 45.0% | |
| AGTCCCTTCGAGATGATTGT+AGG | - | chr7_2:79286410-79286429 | None:intergenic | 45.0% | |
| ! | AAAGGTCACTGGTTGAATCG+CGG | + | chr7_2:79286478-79286497 | Msa1080030:intron | 45.0% |
| TAACTGGCTGTGAGACCAAT+TGG | - | chr7_2:79286650-79286669 | None:intergenic | 45.0% | |
| !! | CACAATCCTTTTAGGTGTCG+AGG | + | chr7_2:79286991-79287010 | Msa1080030:intron | 45.0% |
| CCGATGAAATGTGGATAAGC+TGG | - | chr7_2:79287057-79287076 | None:intergenic | 45.0% | |
| ACTTCACATACAGGGATACC+GGG | - | chr7_2:79287215-79287234 | None:intergenic | 45.0% | |
| CGCTCCCATATTTCCAGTTA+TGG | - | chr7_2:79287332-79287351 | None:intergenic | 45.0% | |
| TGATGCATTTACACCGGGTT+TGG | - | chr7_2:79287751-79287770 | None:intergenic | 45.0% | |
| ATTACCACCCGAATCATCTC+AGG | - | chr7_2:79288208-79288227 | None:intergenic | 45.0% | |
| !! | GTAATGTGTCGTTTAGCCCA+TGG | + | chr7_2:79288665-79288684 | Msa1080030:intron | 45.0% |
| CACAAGTACAGGTGTTTCCT+TGG | - | chr7_2:79288866-79288885 | None:intergenic | 45.0% | |
| AGTGGTGAGAGAACATTGTG+GGG | - | chr7_2:79289125-79289144 | None:intergenic | 45.0% | |
| GAAGTGGTGAGAGAACATTG+TGG | - | chr7_2:79289127-79289146 | None:intergenic | 45.0% | |
| GCAATAGCTGCTCCATGAAT+AGG | - | chr7_2:79289151-79289170 | None:intergenic | 45.0% | |
| CAGATTTACCAGCCTGCTTA+GGG | - | chr7_2:79289476-79289495 | None:intergenic | 45.0% | |
| CAATCCCTGTAACAGGTGAT+TGG | + | chr7_2:79289557-79289576 | Msa1080030:intron | 45.0% | |
| CAACTCCAATCACCTGTTAC+AGG | - | chr7_2:79289565-79289584 | None:intergenic | 45.0% | |
| TGTAAAGAACGATGAGGAGG+AGG | - | chr7_2:79289606-79289625 | None:intergenic | 45.0% | |
| GTGTGTAAAGAACGATGAGG+AGG | - | chr7_2:79289609-79289628 | None:intergenic | 45.0% | |
| ! | TTATGGTCACGTGTTACTGG+CGG | + | chr7_2:79289891-79289910 | Msa1080030:three_prime_UTR | 45.0% |
| CTGGCGGTTTAGTTATGGTT+AGG | + | chr7_2:79289907-79289926 | Msa1080030:three_prime_UTR | 45.0% | |
| ! | GGCCCTATCATAGCGGAATT+TGG | - | chr7_2:79286111-79286130 | None:intergenic | 50.0% |
| GGGAGGTCAGCAAGGATAAA+GGG | + | chr7_2:79287184-79287203 | Msa1080030:CDS | 50.0% | |
| CAAGGATAAAGGGAGTGACC+CGG | + | chr7_2:79287194-79287213 | Msa1080030:CDS | 50.0% | |
| ! | CATTCCTGAGATGATTCGGG+TGG | + | chr7_2:79288201-79288220 | Msa1080030:intron | 50.0% |
| AGGGGGCTATTGTGTCTTAG+TGG | + | chr7_2:79288549-79288568 | Msa1080030:intron | 50.0% | |
| TGACAAGGAGACTCCGAAGA+AGG | + | chr7_2:79288737-79288756 | Msa1080030:CDS | 50.0% | |
| GAGACTCCGAAGAAGGTAAC+TGG | + | chr7_2:79288744-79288763 | Msa1080030:intron | 50.0% | |
| AGACTGAAGGGAGCAACAAG+AGG | + | chr7_2:79288824-79288843 | Msa1080030:intron | 50.0% | |
| TGAAGGGAGCAACAAGAGGA+GGG | + | chr7_2:79288828-79288847 | Msa1080030:CDS | 50.0% | |
| GAGGGATGCTGAATCTTCCA+AGG | + | chr7_2:79288846-79288865 | Msa1080030:CDS | 50.0% | |
| CTCACCACTTCGCCTATTCA+TGG | + | chr7_2:79289136-79289155 | Msa1080030:intron | 50.0% | |
| TGCTCCATGAATAGGCGAAG+TGG | - | chr7_2:79289143-79289162 | None:intergenic | 50.0% | |
| TAGTGTCCCTTACCCTAAGC+AGG | + | chr7_2:79289461-79289480 | Msa1080030:CDS | 50.0% | |
| TACCAGCCTGCTTAGGGTAA+GGG | - | chr7_2:79289470-79289489 | None:intergenic | 50.0% | |
| TTACCAGCCTGCTTAGGGTA+AGG | - | chr7_2:79289471-79289490 | None:intergenic | 50.0% | |
| GCAGATTTACCAGCCTGCTT+AGG | - | chr7_2:79289477-79289496 | None:intergenic | 50.0% | |
| TAACAAGCAGCCAGAGAAGC+AGG | + | chr7_2:79289503-79289522 | Msa1080030:CDS | 50.0% | |
| ! | TTTGGAGTCTCCTGCTTCTC+TGG | - | chr7_2:79289516-79289535 | None:intergenic | 50.0% |
| CAGGAGACTCCAAAGTCTAG+TGG | + | chr7_2:79289522-79289541 | Msa1080030:CDS | 50.0% | |
| ACAGCTGCAATCCCTGTAAC+AGG | + | chr7_2:79289550-79289569 | Msa1080030:CDS | 50.0% | |
| CAAGCACAGTGCCAAGTGAA+GGG | + | chr7_2:79289705-79289724 | Msa1080030:exon | 50.0% | |
| GCACTCTCTCTCTGCAGTCA+TGG | + | chr7_2:79285594-79285613 | Msa1080030:exon | 55.0% | |
| CTACAGCGGCCCTATCATAG+CGG | - | chr7_2:79286118-79286137 | None:intergenic | 55.0% | |
| ! | CACTGGTTGAATCGCGGAGT+CGG | + | chr7_2:79286484-79286503 | Msa1080030:intron | 55.0% |
| !! | ATCGCGGAGTCGGCTTGTAA+AGG | + | chr7_2:79286494-79286513 | Msa1080030:intron | 55.0% |
| ATGACAGGCATGTTTGGGGG+AGG | + | chr7_2:79287167-79287186 | Msa1080030:intron | 55.0% | |
| ATGTTTGGGGGAGGTCAGCA+AGG | + | chr7_2:79287176-79287195 | Msa1080030:CDS | 55.0% | |
| GGGGAGGTCAGCAAGGATAA+AGG | + | chr7_2:79287183-79287202 | Msa1080030:CDS | 55.0% | |
| !! | TATGGGAGCGTCTTCCTTGC+TGG | + | chr7_2:79287342-79287361 | Msa1080030:CDS | 55.0% |
| GTAGGGAAACCTGCCAAACC+CGG | + | chr7_2:79287735-79287754 | Msa1080030:intron | 55.0% | |
| GCATTTACACCGGGTTTGGC+AGG | - | chr7_2:79287747-79287766 | None:intergenic | 55.0% | |
| GTCGTTTAGCCCATGGCGAA+TGG | + | chr7_2:79288672-79288691 | Msa1080030:intron | 55.0% | |
| CTGAAGGGAGCAACAAGAGG+AGG | + | chr7_2:79288827-79288846 | Msa1080030:CDS | 55.0% | |
| CCTTCACTTGGCACTGTGCT+TGG | - | chr7_2:79289707-79289726 | None:intergenic | 55.0% | |
| CCAAGCACAGTGCCAAGTGA+AGG | + | chr7_2:79289704-79289723 | Msa1080030:CDS | 55.0% | |
| GTCCCTTACCCTAAGCAGGC+TGG | + | chr7_2:79289465-79289484 | Msa1080030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 79285472 | 79290019 | 79285472 | ID=Msa1080030;Name=Msa1080030 |
| chr7_2 | mRNA | 79285472 | 79290019 | 79285472 | ID=Msa1080030-mRNA-1;Parent=Msa1080030;Name=Msa1080030-mRNA-1;_AED=0.24;_eAED=0.24;_QI=141|0.87|0.88|1|1|1|9|296|272 |
| chr7_2 | exon | 79285472 | 79285625 | 79285472 | ID=Msa1080030-mRNA-1:exon:19952;Parent=Msa1080030-mRNA-1 |
| chr7_2 | exon | 79287005 | 79287075 | 79287005 | ID=Msa1080030-mRNA-1:exon:19953;Parent=Msa1080030-mRNA-1 |
| chr7_2 | exon | 79287174 | 79287378 | 79287174 | ID=Msa1080030-mRNA-1:exon:19954;Parent=Msa1080030-mRNA-1 |
| chr7_2 | exon | 79287613 | 79287651 | 79287613 | ID=Msa1080030-mRNA-1:exon:19955;Parent=Msa1080030-mRNA-1 |
| chr7_2 | exon | 79287739 | 79287875 | 79287739 | ID=Msa1080030-mRNA-1:exon:19956;Parent=Msa1080030-mRNA-1 |
| chr7_2 | exon | 79288681 | 79288758 | 79288681 | ID=Msa1080030-mRNA-1:exon:19957;Parent=Msa1080030-mRNA-1 |
| chr7_2 | exon | 79288826 | 79288919 | 79288826 | ID=Msa1080030-mRNA-1:exon:19958;Parent=Msa1080030-mRNA-1 |
| chr7_2 | exon | 79289451 | 79289571 | 79289451 | ID=Msa1080030-mRNA-1:exon:19959;Parent=Msa1080030-mRNA-1 |
| chr7_2 | exon | 79289663 | 79290019 | 79289663 | ID=Msa1080030-mRNA-1:exon:19960;Parent=Msa1080030-mRNA-1 |
| chr7_2 | five_prime_UTR | 79285472 | 79285612 | 79285472 | ID=Msa1080030-mRNA-1:five_prime_utr;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79285613 | 79285625 | 79285613 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79287005 | 79287075 | 79287005 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79287174 | 79287378 | 79287174 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79287613 | 79287651 | 79287613 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79287739 | 79287875 | 79287739 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79288681 | 79288758 | 79288681 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79288826 | 79288919 | 79288826 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79289451 | 79289571 | 79289451 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | CDS | 79289663 | 79289723 | 79289663 | ID=Msa1080030-mRNA-1:cds;Parent=Msa1080030-mRNA-1 |
| chr7_2 | three_prime_UTR | 79289724 | 79290019 | 79289724 | ID=Msa1080030-mRNA-1:three_prime_utr;Parent=Msa1080030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
