Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173030 | G7ICB3 | 91.144 | 271 | 17 | 1 | 1 | 271 | 1 | 264 | 4.29e-177 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052580 | Msa1173030 | 0.914005 | 3.182796e-84 | -8.615850e-47 |
| Msa0636210 | Msa1173030 | 0.800129 | 1.665488e-48 | -8.615850e-47 |
| Msa0442860 | Msa1173030 | 0.810287 | 1.242346e-50 | -8.615850e-47 |
| Msa1129370 | Msa1173030 | 0.800957 | 1.129644e-48 | -8.615850e-47 |
| Msa1157110 | Msa1173030 | 0.812354 | 4.422230e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173030 | MtrunA17_Chr1g0152461 | 91.144 | 271 | 17 | 1 | 1 | 271 | 1 | 264 | 0.0 | 498 |
| Msa1173030 | MtrunA17_Chr3g0134881 | 42.672 | 232 | 96 | 8 | 1 | 207 | 1 | 220 | 2.28e-47 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173030 | AT1G59590.1 | 39.683 | 189 | 103 | 5 | 22 | 202 | 7 | 192 | 1.03e-32 | 119 |
| Msa1173030 | AT1G10220.1 | 40.000 | 180 | 95 | 5 | 22 | 190 | 3 | 180 | 1.12e-25 | 100 |
| Msa1173030 | AT1G10220.2 | 37.696 | 191 | 95 | 5 | 22 | 190 | 3 | 191 | 3.14e-24 | 97.4 |
Find 39 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGGCCACGTGTGGAATA+AGG | 0.226117 | 8_1:+3227351 | None:intergenic |
| ATTTGTTGTGATAATGATTT+TGG | 0.226913 | 8_1:-3227013 | Msa1173030:CDS |
| ATTCCATGAAATTCTCTTCT+TGG | 0.239938 | 8_1:+3227077 | None:intergenic |
| AAGAAAAGAGATTATGTTAG+AGG | 0.255949 | 8_1:-3226889 | Msa1173030:CDS |
| TATCTGATTTAAATGATAAA+AGG | 0.270978 | 8_1:-3227311 | Msa1173030:CDS |
| AGGTTTGAGTGAGAAGAAAA+TGG | 0.283239 | 8_1:-3226869 | Msa1173030:CDS |
| TATCTTCTAGGGCTTGAATT+AGG | 0.299114 | 8_1:+3227399 | None:intergenic |
| CATAGATCATCATCATCTTC+TGG | 0.320316 | 8_1:+3227432 | None:intergenic |
| TCAAAATCACCACCACTTCT+TGG | 0.326218 | 8_1:+3226667 | None:intergenic |
| GACTTAGGACTCAAGCTTCT+TGG | 0.327238 | 8_1:+3227159 | None:intergenic |
| TTCCATGAAATTCTCTTCTT+GGG | 0.358637 | 8_1:+3227078 | None:intergenic |
| CCCTTATTCCACACGTGGCC+TGG | 0.364320 | 8_1:-3227352 | Msa1173030:CDS |
| ATGAAATTCTCTTCTTGGGT+TGG | 0.385407 | 8_1:+3227082 | None:intergenic |
| AAGATGGAGTGAGAAGAAAA+TGG | 0.393067 | 8_1:-3226716 | Msa1173030:CDS |
| TTGAATGTTCCACAAACAAA+AGG | 0.402250 | 8_1:+3227456 | None:intergenic |
| CCAGGCCACGTGTGGAATAA+GGG | 0.414462 | 8_1:+3227352 | None:intergenic |
| GATTTAATATCCTTCAAAGT+TGG | 0.427450 | 8_1:+3226925 | None:intergenic |
| AAAATCATTATCACAACAAA+TGG | 0.436688 | 8_1:+3227015 | None:intergenic |
| AACCCAAGAAGAGAATTTCA+TGG | 0.440286 | 8_1:-3227080 | Msa1173030:CDS |
| AGAAAGATTATGTTAGAAGA+TGG | 0.449967 | 8_1:-3226732 | Msa1173030:CDS |
| AAAATGGTTACTACTAATGA+TGG | 0.460282 | 8_1:-3226700 | Msa1173030:CDS |
| GTATGTTATTCCAACTTTGA+AGG | 0.503391 | 8_1:-3226935 | Msa1173030:CDS |
| TGAATCATCAATTGTTGCTA+TGG | 0.523729 | 8_1:-3227115 | Msa1173030:CDS |
| ATGGATGTAGTGAATAATGA+CGG | 0.534632 | 8_1:-3226850 | Msa1173030:CDS |
| TGAATGTTCCACAAACAAAA+GGG | 0.542425 | 8_1:+3227457 | None:intergenic |
| AAAGTGCTGAAAATTTATCC+AGG | 0.555876 | 8_1:+3227334 | None:intergenic |
| AAATTTATCCAGGCCACGTG+TGG | 0.580635 | 8_1:+3227344 | None:intergenic |
| GGATTAGTTTCTCCAAGAAG+TGG | 0.582854 | 8_1:-3226679 | Msa1173030:CDS |
| TGGATGTAGTGAATAATGAC+GGG | 0.588904 | 8_1:-3226849 | Msa1173030:CDS |
| AAAAGATGGTGGTTAATGAA+GGG | 0.592112 | 8_1:-3226765 | Msa1173030:CDS |
| GAATATGAAGAATATTGAGA+TGG | 0.602572 | 8_1:-3227058 | Msa1173030:CDS |
| CGAACAAAAGAAATATCATG+AGG | 0.627048 | 8_1:+3227264 | None:intergenic |
| AAGCTTGAGTCCTAAGTCAA+CGG | 0.627738 | 8_1:-3227154 | Msa1173030:CDS |
| TTAGTTTCTCCAAGAAGTGG+TGG | 0.628810 | 8_1:-3226676 | Msa1173030:intron |
| ACAAATGGCAAATAGAACAA+TGG | 0.651573 | 8_1:+3227030 | None:intergenic |
| GAACAAAAGAAATATCATGA+GGG | 0.654561 | 8_1:+3227265 | None:intergenic |
| AATAACCCTTATTCCACACG+TGG | 0.697457 | 8_1:-3227357 | Msa1173030:CDS |
| TGTAGTGAATAATGACGGGG+TGG | 0.710681 | 8_1:-3226845 | Msa1173030:CDS |
| GGATGTAGTGAATAATGACG+GGG | 0.789564 | 8_1:-3226848 | Msa1173030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATACAAGTTTAA+AGG | - | chr8_1:3225878-3225897 | Msa1173030:intron | 10.0% |
| !! | TATTATCTAACTATAAATAT+AGG | - | chr8_1:3226582-3226601 | Msa1173030:intron | 10.0% |
| !! | ACAAAAATATAAATGAATAT+GGG | + | chr8_1:3226730-3226749 | None:intergenic | 10.0% |
| !! | AACAAAAATATAAATGAATA+TGG | + | chr8_1:3226731-3226750 | None:intergenic | 10.0% |
| !! | ATAAAAAATTGCAAAAAAAT+TGG | + | chr8_1:3227090-3227109 | None:intergenic | 10.0% |
| !! | TATCTGATTTAAATGATAAA+AGG | - | chr8_1:3225031-3225050 | Msa1173030:intron | 15.0% |
| !! | ACTATATTTAATAACACAAT+AGG | - | chr8_1:3225831-3225850 | Msa1173030:intron | 15.0% |
| !!! | AACAGATATTAATCATATTT+TGG | + | chr8_1:3225945-3225964 | None:intergenic | 15.0% |
| !!! | GAATTCTTACATTATTATTT+TGG | + | chr8_1:3225978-3225997 | None:intergenic | 15.0% |
| !!! | TTATTTTTTATGAAAAGGAA+GGG | + | chr8_1:3226048-3226067 | None:intergenic | 15.0% |
| !!! | ATTATTTTTTATGAAAAGGA+AGG | + | chr8_1:3226049-3226068 | None:intergenic | 15.0% |
| !!! | CAACATTATTTTTTATGAAA+AGG | + | chr8_1:3226053-3226072 | None:intergenic | 15.0% |
| !!! | TTCATTTATATTTTTGTTCA+TGG | - | chr8_1:3226733-3226752 | Msa1173030:CDS | 15.0% |
| !! | ACAAAATTGTGAATAAATTA+AGG | - | chr8_1:3226843-3226862 | Msa1173030:CDS | 15.0% |
| !! | TGCTATGATATATATATATA+TGG | - | chr8_1:3226915-3226934 | Msa1173030:CDS | 15.0% |
| !! | CAAAAAATTAATACAAATTG+AGG | + | chr8_1:3226968-3226987 | None:intergenic | 15.0% |
| !! | GTTTATATAAAAAATTCATC+GGG | + | chr8_1:3227119-3227138 | None:intergenic | 15.0% |
| !! | GGTTTATATAAAAAATTCAT+CGG | + | chr8_1:3227120-3227139 | None:intergenic | 15.0% |
| !! | AAAATCATTATCACAACAAA+TGG | + | chr8_1:3225330-3225349 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTGATAATGATTT+TGG | - | chr8_1:3225329-3225348 | Msa1173030:intron | 20.0% |
| !! | AAGAAAAAAGATTATGTTAG+AGG | - | chr8_1:3225543-3225562 | Msa1173030:intron | 20.0% |
| !! | AGAAAAAAGATTATGTTAGA+GGG | - | chr8_1:3225544-3225563 | Msa1173030:intron | 20.0% |
| !!! | TCTTACATTATTATTTTGGA+TGG | + | chr8_1:3225974-3225993 | None:intergenic | 20.0% |
| !!! | AAGTAGCATTTTTTACTAAA+AGG | - | chr8_1:3226073-3226092 | Msa1173030:intron | 20.0% |
| !!! | AGTAGCATTTTTTACTAAAA+GGG | - | chr8_1:3226074-3226093 | Msa1173030:intron | 20.0% |
| !!! | AAAGGGAAATTCAAATTTTA+TGG | + | chr8_1:3226485-3226504 | None:intergenic | 20.0% |
| !!! | AGATAATAGACTTTATTTGA+TGG | + | chr8_1:3226570-3226589 | None:intergenic | 20.0% |
| !! | TTATATAAACCCCTATAAAT+TGG | - | chr8_1:3227129-3227148 | Msa1173030:CDS | 20.0% |
| !! | TATATAAACCCCTATAAATT+GGG | - | chr8_1:3227130-3227149 | Msa1173030:CDS | 20.0% |
| !! | AAAAAATTGCCCAATTTATA+GGG | + | chr8_1:3227142-3227161 | None:intergenic | 20.0% |
| !! | AAAAAAATTGCCCAATTTAT+AGG | + | chr8_1:3227143-3227162 | None:intergenic | 20.0% |
| !!! | TATAAATTGGGCAATTTTTT+TGG | - | chr8_1:3227142-3227161 | Msa1173030:CDS | 20.0% |
| !! | CTTTTCTTTTGTATCTTCTA+GGG | + | chr8_1:3224957-3224976 | None:intergenic | 25.0% |
| !! | TCTTTTCTTTTGTATCTTCT+AGG | + | chr8_1:3224958-3224977 | None:intergenic | 25.0% |
| ! | GAACAAAAGAAATATCATGA+GGG | + | chr8_1:3225080-3225099 | None:intergenic | 25.0% |
| !! | TTTTCACCTTAACAACAATA+GGG | + | chr8_1:3225134-3225153 | None:intergenic | 25.0% |
| !! | TTTTTCACCTTAACAACAAT+AGG | + | chr8_1:3225135-3225154 | None:intergenic | 25.0% |
| ! | GAATATGAAGAATATTGAGA+TGG | - | chr8_1:3225284-3225303 | Msa1173030:intron | 25.0% |
| !! | TAATTTTCACTTGTATTCTG+TGG | - | chr8_1:3225385-3225404 | Msa1173030:intron | 25.0% |
| ! | GATTTAATATCCTTCAAAGT+TGG | + | chr8_1:3225420-3225439 | None:intergenic | 25.0% |
| ! | AAGAAAAGAGATTATGTTAG+AGG | - | chr8_1:3225453-3225472 | Msa1173030:intron | 25.0% |
| ! | AGAAAGATTATGTTAGAAGA+TGG | - | chr8_1:3225610-3225629 | Msa1173030:intron | 25.0% |
| ! | AAAATGGTTACTACTAATGA+TGG | - | chr8_1:3225642-3225661 | Msa1173030:intron | 25.0% |
| ! | TAATAACACAATAGGTCAAA+AGG | - | chr8_1:3225839-3225858 | Msa1173030:intron | 25.0% |
| ! | ATGGTTCGAATAAAATTTGT+TGG | + | chr8_1:3226000-3226019 | None:intergenic | 25.0% |
| !! | ACTTACTTTAAAAGCCAATT+AGG | - | chr8_1:3226218-3226237 | Msa1173030:intron | 25.0% |
| !!! | TTTAATGATGTGTTGATTGA+TGG | + | chr8_1:3226317-3226336 | None:intergenic | 25.0% |
| ! | GTAGTGCTTAAATAAATGTT+GGG | + | chr8_1:3226515-3226534 | None:intergenic | 25.0% |
| ! | AGTAGTGCTTAAATAAATGT+TGG | + | chr8_1:3226516-3226535 | None:intergenic | 25.0% |
| !!! | AAGTGATTTTAGAATGAGAA+AGG | + | chr8_1:3226630-3226649 | None:intergenic | 25.0% |
| ! | TGTTAAGTTTCATGCTAATA+AGG | - | chr8_1:3226886-3226905 | Msa1173030:CDS | 25.0% |
| ! | AAAAATTGCCCAATTTATAG+GGG | + | chr8_1:3227141-3227160 | None:intergenic | 25.0% |
| TGAATGTTCCACAAACAAAA+GGG | + | chr8_1:3224888-3224907 | None:intergenic | 30.0% | |
| TTGAATGTTCCACAAACAAA+AGG | + | chr8_1:3224889-3224908 | None:intergenic | 30.0% | |
| !! | AAAGTGCTGAAAATTTATCC+AGG | + | chr8_1:3225011-3225030 | None:intergenic | 30.0% |
| CGAACAAAAGAAATATCATG+AGG | + | chr8_1:3225081-3225100 | None:intergenic | 30.0% | |
| !! | TTTTGTCCCTATTGTTGTTA+AGG | - | chr8_1:3225125-3225144 | Msa1173030:intron | 30.0% |
| !! | GTTTCACTACTTTTAACTCT+TGG | + | chr8_1:3225164-3225183 | None:intergenic | 30.0% |
| TGAATCATCAATTGTTGCTA+TGG | - | chr8_1:3225227-3225246 | Msa1173030:intron | 30.0% | |
| TTCCATGAAATTCTCTTCTT+GGG | + | chr8_1:3225267-3225286 | None:intergenic | 30.0% | |
| ATTCCATGAAATTCTCTTCT+TGG | + | chr8_1:3225268-3225287 | None:intergenic | 30.0% | |
| ACAAATGGCAAATAGAACAA+TGG | + | chr8_1:3225315-3225334 | None:intergenic | 30.0% | |
| GTATGTTATTCCAACTTTGA+AGG | - | chr8_1:3225407-3225426 | Msa1173030:intron | 30.0% | |
| ATGGATGTAGTGAATAATGA+CGG | - | chr8_1:3225492-3225511 | Msa1173030:intron | 30.0% | |
| AGGGTTTAGTGAAAAAAAGA+TGG | - | chr8_1:3225563-3225582 | Msa1173030:intron | 30.0% | |
| GTTTAGTGAAAAAAAGATGG+TGG | - | chr8_1:3225566-3225585 | Msa1173030:intron | 30.0% | |
| ! | AAAAAGATGGTGGTTAATGA+AGG | - | chr8_1:3225576-3225595 | Msa1173030:intron | 30.0% |
| ! | AAAAGATGGTGGTTAATGAA+GGG | - | chr8_1:3225577-3225596 | Msa1173030:intron | 30.0% |
| AGTAAGTATGAAGTATGATG+AGG | + | chr8_1:3226205-3226224 | None:intergenic | 30.0% | |
| TAAGCTTGGTAAATCACTTT+AGG | + | chr8_1:3226383-3226402 | None:intergenic | 30.0% | |
| ATATTGAAATAGGAGGCAAA+TGG | + | chr8_1:3226449-3226468 | None:intergenic | 30.0% | |
| ! | AATTCAAATTTTATGGCAGC+TGG | + | chr8_1:3226478-3226497 | None:intergenic | 30.0% |
| TTAAATAAATGTTGGGAAGC+AGG | + | chr8_1:3226508-3226527 | None:intergenic | 30.0% | |
| TCTAACTATAAATATAGGCG+TGG | - | chr8_1:3226587-3226606 | Msa1173030:intron | 30.0% | |
| AACCATTTCTTGAAATGAAC+AGG | + | chr8_1:3226662-3226681 | None:intergenic | 30.0% | |
| AGAACATTAGAAACGATATC+AGG | + | chr8_1:3226770-3226789 | None:intergenic | 30.0% | |
| ! | ATTTTGTCCAAGTTAGTGAT+TGG | + | chr8_1:3226830-3226849 | None:intergenic | 30.0% |
| ! | ACAAGTCATTTGGGTTATAA+TGG | - | chr8_1:3227388-3227407 | Msa1173030:CDS | 30.0% |
| ! | CAAGTCATTTGGGTTATAAT+GGG | - | chr8_1:3227389-3227408 | Msa1173030:CDS | 30.0% |
| !! | ATGTTGAACCCTTTTGTTTG+TGG | - | chr8_1:3224877-3224896 | Msa1173030:intron | 35.0% |
| CATAGATCATCATCATCTTC+TGG | + | chr8_1:3224913-3224932 | None:intergenic | 35.0% | |
| !! | TATCTTCTAGGGCTTGAATT+AGG | + | chr8_1:3224946-3224965 | None:intergenic | 35.0% |
| ATGAAATTCTCTTCTTGGGT+TGG | + | chr8_1:3225263-3225282 | None:intergenic | 35.0% | |
| AACCCAAGAAGAGAATTTCA+TGG | - | chr8_1:3225262-3225281 | Msa1173030:intron | 35.0% | |
| !!! | TTGGTTTTGTTGACTGTGTT+TGG | - | chr8_1:3225348-3225367 | Msa1173030:intron | 35.0% |
| AGGTTTGAGTGAGAAGAAAA+TGG | - | chr8_1:3225473-3225492 | Msa1173030:intron | 35.0% | |
| TGGATGTAGTGAATAATGAC+GGG | - | chr8_1:3225493-3225512 | Msa1173030:intron | 35.0% | |
| AAGATGGAGTGAGAAGAAAA+TGG | - | chr8_1:3225626-3225645 | Msa1173030:intron | 35.0% | |
| GACTAAACATGTACAAAACG+TGG | + | chr8_1:3226026-3226045 | None:intergenic | 35.0% | |
| ! | TGATTTACGCTTTTAGTGAC+AGG | + | chr8_1:3226133-3226152 | None:intergenic | 35.0% |
| AAGCAATAGCTTGACCTAAT+TGG | + | chr8_1:3226235-3226254 | None:intergenic | 35.0% | |
| ATTGCTTAACCCTAATCACT+TGG | - | chr8_1:3226248-3226267 | Msa1173030:intron | 35.0% | |
| GGAAACTAACCAAGTGATTA+GGG | + | chr8_1:3226260-3226279 | None:intergenic | 35.0% | |
| ! | ATCACTTTAGGAGGGAAATT+AGG | + | chr8_1:3226371-3226390 | None:intergenic | 35.0% |
| ! | CTTGGTAAATCACTTTAGGA+GGG | + | chr8_1:3226379-3226398 | None:intergenic | 35.0% |
| GAAGGTCATATTGAAATAGG+AGG | + | chr8_1:3226456-3226475 | None:intergenic | 35.0% | |
| CTGGAAGGTCATATTGAAAT+AGG | + | chr8_1:3226459-3226478 | None:intergenic | 35.0% | |
| !! | GACTTTATTTGATGGTGCAT+GGG | + | chr8_1:3226562-3226581 | None:intergenic | 35.0% |
| !! | AGACTTTATTTGATGGTGCA+TGG | + | chr8_1:3226563-3226582 | None:intergenic | 35.0% |
| AACTATAAATATAGGCGTGG+TGG | - | chr8_1:3226590-3226609 | Msa1173030:intron | 35.0% | |
| GACCTGTTCATTTCAAGAAA+TGG | - | chr8_1:3226657-3226676 | Msa1173030:intron | 35.0% | |
| TCCAAATCCAATCACTAACT+TGG | - | chr8_1:3226820-3226839 | Msa1173030:CDS | 35.0% | |
| TCCAAGTTAGTGATTGGATT+TGG | + | chr8_1:3226824-3226843 | None:intergenic | 35.0% | |
| !!! | TTTTGTTGTTGCATTCTGCA+AGG | - | chr8_1:3226983-3227002 | Msa1173030:CDS | 35.0% |
| CTTAAAATGTTTGCGACCAT+GGG | - | chr8_1:3227019-3227038 | Msa1173030:CDS | 35.0% | |
| CCAAGATTATTGTAAAGCTC+AGG | + | chr8_1:3227233-3227252 | None:intergenic | 35.0% | |
| CCTGAGCTTTACAATAATCT+TGG | - | chr8_1:3227230-3227249 | Msa1173030:CDS | 35.0% | |
| AATAACCCTTATTCCACACG+TGG | - | chr8_1:3224985-3225004 | Msa1173030:intron | 40.0% | |
| AAGCTTGAGTCCTAAGTCAA+CGG | - | chr8_1:3225188-3225207 | Msa1173030:intron | 40.0% | |
| !!! | GACTTTTTCTCCGTTGACTT+AGG | + | chr8_1:3225201-3225220 | None:intergenic | 40.0% |
| GGATGTAGTGAATAATGACG+GGG | - | chr8_1:3225494-3225513 | Msa1173030:intron | 40.0% | |
| GGGTGGTGAAGAAAAATGAA+GGG | - | chr8_1:3225514-3225533 | Msa1173030:intron | 40.0% | |
| GGTGGTGAAGAAAAATGAAG+GGG | - | chr8_1:3225515-3225534 | Msa1173030:intron | 40.0% | |
| !! | GGATTAGTTTCTCCAAGAAG+TGG | - | chr8_1:3225663-3225682 | Msa1173030:intron | 40.0% |
| TTAGTTTCTCCAAGAAGTGG+TGG | - | chr8_1:3225666-3225685 | Msa1173030:intron | 40.0% | |
| TCAAAATCACCACCACTTCT+TGG | + | chr8_1:3225678-3225697 | None:intergenic | 40.0% | |
| CATGTACAAAACGTGGAAGA+TGG | + | chr8_1:3226019-3226038 | None:intergenic | 40.0% | |
| CATTGAATTCCAACATGTGG+TGG | + | chr8_1:3226110-3226129 | None:intergenic | 40.0% | |
| !! | AGGCATTGAATTCCAACATG+TGG | + | chr8_1:3226113-3226132 | None:intergenic | 40.0% |
| GGGAAACTAACCAAGTGATT+AGG | + | chr8_1:3226261-3226280 | None:intergenic | 40.0% | |
| GCTTGGTAAATCACTTTAGG+AGG | + | chr8_1:3226380-3226399 | None:intergenic | 40.0% | |
| ! | CAAATTTTATGGCAGCTGGA+AGG | + | chr8_1:3226474-3226493 | None:intergenic | 40.0% |
| AAATGTTGGGAAGCAGGAAA+GGG | + | chr8_1:3226502-3226521 | None:intergenic | 40.0% | |
| TAAATGTTGGGAAGCAGGAA+AGG | + | chr8_1:3226503-3226522 | None:intergenic | 40.0% | |
| CTTGCTTTGCATTGCTTGAA+AGG | - | chr8_1:3226703-3226722 | Msa1173030:CDS | 40.0% | |
| GCTTAAAATGTTTGCGACCA+TGG | - | chr8_1:3227018-3227037 | Msa1173030:CDS | 40.0% | |
| !! | ACTCAGCCATTTTGCTACTT+TGG | - | chr8_1:3227287-3227306 | Msa1173030:CDS | 40.0% |
| GATCGACCAAAGTAGCAAAA+TGG | + | chr8_1:3227296-3227315 | None:intergenic | 40.0% | |
| TGTATAGTTGCCGTACATTG+CGG | + | chr8_1:3227345-3227364 | None:intergenic | 40.0% | |
| ! | ACGGCAACTATACATTGACT+AGG | - | chr8_1:3227351-3227370 | Msa1173030:CDS | 40.0% |
| ! | CGGCAACTATACATTGACTA+GGG | - | chr8_1:3227352-3227371 | Msa1173030:CDS | 40.0% |
| ! | TATACATTGACTAGGGCGTA+AGG | - | chr8_1:3227359-3227378 | Msa1173030:CDS | 40.0% |
| ! | AAGGCTTGGTACAAGTCATT+TGG | - | chr8_1:3227378-3227397 | Msa1173030:CDS | 40.0% |
| ! | AGGCTTGGTACAAGTCATTT+GGG | - | chr8_1:3227379-3227398 | Msa1173030:CDS | 40.0% |
| GGGATTCTCTCTTGCAATAT+TGG | - | chr8_1:3227409-3227428 | Msa1173030:CDS | 40.0% | |
| AAATTTATCCAGGCCACGTG+TGG | + | chr8_1:3225001-3225020 | None:intergenic | 45.0% | |
| GACTTAGGACTCAAGCTTCT+TGG | + | chr8_1:3225186-3225205 | None:intergenic | 45.0% | |
| ! | TGTAGTGAATAATGACGGGG+TGG | - | chr8_1:3225497-3225516 | Msa1173030:intron | 45.0% |
| GGGGTGGTGAAGAAAAATGA+AGG | - | chr8_1:3225513-3225532 | Msa1173030:intron | 45.0% | |
| GGTGAAGAAAAATGAAGGGG+TGG | - | chr8_1:3225518-3225537 | Msa1173030:intron | 45.0% | |
| GTGATACAGTACACGGATGA+CGG | + | chr8_1:3226162-3226181 | None:intergenic | 45.0% | |
| TCATCCGTGTACTGTATCAC+CGG | - | chr8_1:3226162-3226181 | Msa1173030:intron | 45.0% | |
| TTTCCCTCCCAAGCACAAAT+TGG | - | chr8_1:3226275-3226294 | Msa1173030:intron | 45.0% | |
| CACACCTCCAATTTGTGCTT+GGG | + | chr8_1:3226285-3226304 | None:intergenic | 45.0% | |
| ACACACCTCCAATTTGTGCT+TGG | + | chr8_1:3226286-3226305 | None:intergenic | 45.0% | |
| CTGCATTTATTGCTGTCGTG+TGG | + | chr8_1:3226415-3226434 | None:intergenic | 45.0% | |
| ! | ATAGGCGTGGTGGAAACAAA+AGG | - | chr8_1:3226600-3226619 | Msa1173030:intron | 45.0% |
| AAAATGTTTGCGACCATGGG+CGG | - | chr8_1:3227022-3227041 | Msa1173030:CDS | 45.0% | |
| AAAAAAATTGGCCCTGAGCC+CGG | + | chr8_1:3227078-3227097 | None:intergenic | 45.0% | |
| TGTAGCAAGCCACCACATGT+TGG | - | chr8_1:3226098-3226117 | Msa1173030:intron | 50.0% | |
| ! | TGCACCGGTGATACAGTACA+CGG | + | chr8_1:3226169-3226188 | None:intergenic | 50.0% |
| CCTCCAATTTGTGCTTGGGA+GGG | + | chr8_1:3226281-3226300 | None:intergenic | 50.0% | |
| ACCTCCAATTTGTGCTTGGG+AGG | + | chr8_1:3226282-3226301 | None:intergenic | 50.0% | |
| ! | TGTGGCTTGTGTGGTAAGCT+TGG | + | chr8_1:3226397-3226416 | None:intergenic | 50.0% |
| AAGTCAGTCGCAAACAGTGG+CGG | + | chr8_1:3227258-3227277 | None:intergenic | 50.0% | |
| ! | CCACTGTTTGCGACTGACTT+CGG | - | chr8_1:3227258-3227277 | Msa1173030:CDS | 50.0% |
| TCCTACCAACAACGAGTTCG+AGG | - | chr8_1:3227314-3227333 | Msa1173030:CDS | 50.0% | |
| AACAGCCTCGAACTCGTTGT+TGG | + | chr8_1:3227322-3227341 | None:intergenic | 50.0% | |
| ATTGACTAGGGCGTAAGGCT+TGG | - | chr8_1:3227364-3227383 | Msa1173030:CDS | 50.0% | |
| CCAGGCCACGTGTGGAATAA+GGG | + | chr8_1:3224993-3225012 | None:intergenic | 55.0% | |
| TCCAGGCCACGTGTGGAATA+AGG | + | chr8_1:3224994-3225013 | None:intergenic | 55.0% | |
| TCACCGGTGCATTACAACGC+TGG | - | chr8_1:3226178-3226197 | Msa1173030:intron | 55.0% | |
| CACCGGTGCATTACAACGCT+GGG | - | chr8_1:3226179-3226198 | Msa1173030:intron | 55.0% | |
| CCCTCCCAAGCACAAATTGG+AGG | - | chr8_1:3226278-3226297 | Msa1173030:intron | 55.0% | |
| ! | TTGCTGTCGTGTGGCTTGTG+TGG | + | chr8_1:3226406-3226425 | None:intergenic | 55.0% |
| CCGAAGTCAGTCGCAAACAG+TGG | + | chr8_1:3227261-3227280 | None:intergenic | 55.0% | |
| GCCTCGAACTCGTTGTTGGT+AGG | + | chr8_1:3227318-3227337 | None:intergenic | 55.0% | |
| CGAGGCTGTTCCGCAATGTA+CGG | - | chr8_1:3227332-3227351 | Msa1173030:CDS | 55.0% | |
| CCCTTATTCCACACGTGGCC+TGG | - | chr8_1:3224990-3225009 | Msa1173030:intron | 60.0% | |
| GGCCCAGCGTTGTAATGCAC+CGG | + | chr8_1:3226184-3226203 | None:intergenic | 60.0% | |
| TGCGACCATGGGCGGTTCTA+TGG | - | chr8_1:3227030-3227049 | Msa1173030:CDS | 60.0% | |
| TCGAGCCATAGAACCGCCCA+TGG | + | chr8_1:3227038-3227057 | None:intergenic | 60.0% | |
| GTTCTATGGCTCGACGACCC+CGG | - | chr8_1:3227044-3227063 | Msa1173030:CDS | 60.0% | |
| TTCTATGGCTCGACGACCCC+GGG | - | chr8_1:3227045-3227064 | Msa1173030:CDS | 60.0% | |
| AAATTGGCCCTGAGCCCGGA+CGG | + | chr8_1:3227074-3227093 | None:intergenic | 60.0% | |
| AATTGGCCCTGAGCCCGGAC+GGG | + | chr8_1:3227073-3227092 | None:intergenic | 65.0% | |
| ! | GACGACCCCGGGCACCCGTC+CGG | - | chr8_1:3227056-3227075 | Msa1173030:CDS | 80.0% |
| ! | ACGACCCCGGGCACCCGTCC+GGG | - | chr8_1:3227057-3227076 | Msa1173030:CDS | 80.0% |
| ! | TGAGCCCGGACGGGTGCCCG+GGG | + | chr8_1:3227064-3227083 | None:intergenic | 80.0% |
| ! | CTGAGCCCGGACGGGTGCCC+GGG | + | chr8_1:3227065-3227084 | None:intergenic | 80.0% |
| ! | CCTGAGCCCGGACGGGTGCC+CGG | + | chr8_1:3227066-3227085 | None:intergenic | 80.0% |
| ! | CGGGCACCCGTCCGGGCTCA+GGG | - | chr8_1:3227064-3227083 | Msa1173030:CDS | 80.0% |
| ! | CCGGGCACCCGTCCGGGCTC+AGG | - | chr8_1:3227063-3227082 | Msa1173030:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 3224877 | 3227487 | 3224877 | ID=Msa1173030;Name=Msa1173030 |
| chr8_1 | mRNA | 3224877 | 3227487 | 3224877 | ID=Msa1173030-mRNA-1;Parent=Msa1173030;Name=Msa1173030-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|2|0|271 |
| chr8_1 | exon | 3226677 | 3227487 | 3226677 | ID=Msa1173030-mRNA-1:exon:1204;Parent=Msa1173030-mRNA-1 |
| chr8_1 | exon | 3224877 | 3224881 | 3224877 | ID=Msa1173030-mRNA-1:exon:1203;Parent=Msa1173030-mRNA-1 |
| chr8_1 | CDS | 3226677 | 3227487 | 3226677 | ID=Msa1173030-mRNA-1:cds;Parent=Msa1173030-mRNA-1 |
| chr8_1 | CDS | 3224877 | 3224881 | 3224877 | ID=Msa1173030-mRNA-1:cds;Parent=Msa1173030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
