Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052580 | XP_003589063.1 | 91.438 | 292 | 17 | 2 | 1 | 291 | 1 | 285 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052580 | G7ICB3 | 91.438 | 292 | 17 | 2 | 1 | 291 | 1 | 285 | 0.0 | 536 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022470 | Msa0052580 | 0.811520 | 6.719377e-51 | -8.615850e-47 |
| Msa0052580 | Msa0078700 | 0.800864 | 1.180036e-48 | -8.615850e-47 |
| Msa0052580 | Msa0095940 | 0.825566 | 4.371233e-54 | -8.615850e-47 |
| Msa0052580 | Msa0171330 | 0.800682 | 1.285131e-48 | -8.615850e-47 |
| Msa0052580 | Msa0264680 | 0.803248 | 3.817370e-49 | -8.615850e-47 |
| Msa0052580 | Msa0302730 | 0.812231 | 4.705688e-51 | -8.615850e-47 |
| Msa0052580 | Msa0306310 | 0.818984 | 1.473636e-52 | -8.615850e-47 |
| Msa0052580 | Msa0345890 | 0.814205 | 1.734656e-51 | -8.615850e-47 |
| Msa0052580 | Msa0442860 | 0.837396 | 5.327727e-57 | -8.615850e-47 |
| Msa0052580 | Msa0534610 | 0.810138 | 1.337542e-50 | -8.615850e-47 |
| Msa0052580 | Msa0590810 | 0.810071 | 1.382802e-50 | -8.615850e-47 |
| Msa0052580 | Msa0600590 | 0.807016 | 6.209595e-50 | -8.615850e-47 |
| Msa0052580 | Msa0611060 | 0.818945 | 1.504234e-52 | -8.615850e-47 |
| Msa0052580 | Msa0631130 | 0.816266 | 6.043455e-52 | -8.615850e-47 |
| Msa0052580 | Msa0669350 | 0.802146 | 6.444065e-49 | -8.615850e-47 |
| Msa0052580 | Msa0723770 | 0.806902 | 6.562977e-50 | -8.615850e-47 |
| Msa0052580 | Msa0744640 | 0.818241 | 2.172398e-52 | -8.615850e-47 |
| Msa0052580 | Msa0804870 | 0.801991 | 6.932549e-49 | -8.615850e-47 |
| Msa0052580 | Msa0832950 | 0.835313 | 1.804336e-56 | -8.615850e-47 |
| Msa0052580 | Msa0833270 | 0.823672 | 1.220922e-53 | -8.615850e-47 |
| Msa0052580 | Msa0838870 | 0.801114 | 1.048800e-48 | -8.615850e-47 |
| Msa0052580 | Msa0841730 | 0.818070 | 2.374421e-52 | -8.615850e-47 |
| Msa0052580 | Msa1034450 | 0.830231 | 3.299149e-55 | -8.615850e-47 |
| Msa0052580 | Msa1074200 | 0.830075 | 3.601925e-55 | -8.615850e-47 |
| Msa0052580 | Msa1114670 | 0.827322 | 1.667656e-54 | -8.615850e-47 |
| Msa0052580 | Msa1120580 | 0.805092 | 1.577504e-49 | -8.615850e-47 |
| Msa0052580 | Msa1133700 | 0.812688 | 3.738961e-51 | -8.615850e-47 |
| Msa0052580 | Msa1157110 | 0.834762 | 2.485371e-56 | -8.615850e-47 |
| Msa0052580 | Msa1157670 | 0.805231 | 1.475150e-49 | -8.615850e-47 |
| Msa0052580 | Msa1159170 | 0.824303 | 8.682368e-54 | -8.615850e-47 |
| Msa0052580 | Msa1173030 | 0.914005 | 3.182796e-84 | -8.615850e-47 |
| Msa0052580 | Msa1180430 | 0.806469 | 8.104383e-50 | -8.615850e-47 |
| Msa0052580 | Msa1187490 | 0.801317 | 9.533604e-49 | -8.615850e-47 |
| Msa0052580 | Msa1225580 | 0.804861 | 1.762499e-49 | -8.615850e-47 |
| Msa0052580 | Msa1355510 | 0.803013 | 4.269546e-49 | -8.615850e-47 |
| Msa0052580 | Msa1404050 | 0.828743 | 7.587317e-55 | -8.615850e-47 |
| Msa0052580 | Msa1413800 | 0.820524 | 6.554885e-53 | -8.615850e-47 |
| Msa0052580 | Msa1435320 | 0.811784 | 5.886182e-51 | -8.615850e-47 |
| Msa0052580 | Msa1436090 | 0.821357 | 4.216088e-53 | -8.615850e-47 |
| Msa0052580 | Msa1443400 | 0.813219 | 2.859425e-51 | -8.615850e-47 |
| Msa0052580 | Msa1448040 | 0.815052 | 1.126420e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052580 | MtrunA17_Chr1g0152461 | 91.438 | 292 | 17 | 2 | 1 | 291 | 1 | 285 | 0.0 | 536 |
| Msa0052580 | MtrunA17_Chr3g0134881 | 42.241 | 232 | 97 | 8 | 1 | 207 | 1 | 220 | 1.69e-46 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052580 | AT1G59590.1 | 39.683 | 189 | 103 | 5 | 22 | 202 | 7 | 192 | 1.65e-32 | 119 |
| Msa0052580 | AT1G10220.1 | 40.000 | 180 | 95 | 5 | 22 | 190 | 3 | 180 | 1.60e-25 | 101 |
| Msa0052580 | AT1G10220.2 | 37.696 | 191 | 95 | 5 | 22 | 190 | 3 | 191 | 5.45e-24 | 97.4 |
Find 41 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGGCCACGTGTGGAATA+AGG | 0.226117 | 1_2:+6879125 | None:intergenic |
| ATTTGTTGTGATAATGATTT+TGG | 0.226913 | 1_2:-6878787 | Msa0052580:CDS |
| ATTCCATGAAATTCTCTTCT+TGG | 0.239938 | 1_2:+6878851 | None:intergenic |
| AAGAAAAGAGATTATGTTAG+AGG | 0.255949 | 1_2:-6878663 | Msa0052580:CDS |
| TATCTGATTTAAATGATAAA+AGG | 0.270978 | 1_2:-6879085 | Msa0052580:CDS |
| AGGTTTGAGTGAGAAGAAAA+TGG | 0.283239 | 1_2:-6878643 | Msa0052580:CDS |
| CATAGTTCATCATCATCTTC+TGG | 0.290163 | 1_2:+6879206 | None:intergenic |
| TATCTTCTAGGGCTTGAATT+AGG | 0.299114 | 1_2:+6879173 | None:intergenic |
| TCAAAATCACCACCACTTCT+TGG | 0.326218 | 1_2:+6878441 | None:intergenic |
| GACTTAGGACTCAAGCTTCT+TGG | 0.327238 | 1_2:+6878933 | None:intergenic |
| TTCCATGAAATTCTCTTCTT+GGG | 0.358637 | 1_2:+6878852 | None:intergenic |
| CCCTTATTCCACACGTGGCC+TGG | 0.364320 | 1_2:-6879126 | Msa0052580:CDS |
| ATGAAATTCTCTTCTTGGGT+TGG | 0.385407 | 1_2:+6878856 | None:intergenic |
| GGGTTGGTTTCTTTCTTCCA+TGG | 0.388895 | 1_2:+6878872 | None:intergenic |
| AAGATGGAGTGAGAAGAAAA+TGG | 0.393067 | 1_2:-6878490 | Msa0052580:CDS |
| TTGAATGTTCCACAAACAAA+AGG | 0.402250 | 1_2:+6879230 | None:intergenic |
| CCAGGCCACGTGTGGAATAA+GGG | 0.414462 | 1_2:+6879126 | None:intergenic |
| GATTTAATATCCTTCAAAGT+TGG | 0.427450 | 1_2:+6878699 | None:intergenic |
| AAAATCATTATCACAACAAA+TGG | 0.436688 | 1_2:+6878789 | None:intergenic |
| AACCCAAGAAGAGAATTTCA+TGG | 0.440286 | 1_2:-6878854 | Msa0052580:CDS |
| AGAAAGATTATGTTAGAAGA+TGG | 0.449967 | 1_2:-6878506 | Msa0052580:CDS |
| AACATTCACACAAGAAAAGT+TGG | 0.459312 | 1_2:-6878389 | Msa0052580:CDS |
| AAAATGGTTACTACTAATGA+TGG | 0.460282 | 1_2:-6878474 | Msa0052580:CDS |
| GTATGTTATTCCAACTTTGA+AGG | 0.503391 | 1_2:-6878709 | Msa0052580:CDS |
| ATGGATGTAGTGAATAATGA+CGG | 0.534632 | 1_2:-6878624 | Msa0052580:CDS |
| TGAATGTTCCACAAACAAAA+GGG | 0.542425 | 1_2:+6879231 | None:intergenic |
| AAAGTGCTGAAAATTTATCC+AGG | 0.555876 | 1_2:+6879108 | None:intergenic |
| AAATTTATCCAGGCCACGTG+TGG | 0.580635 | 1_2:+6879118 | None:intergenic |
| GGATTAGTTTCTCCAAGAAG+TGG | 0.582854 | 1_2:-6878453 | Msa0052580:CDS |
| TGGATGTAGTGAATAATGAC+GGG | 0.588904 | 1_2:-6878623 | Msa0052580:CDS |
| AAAAGATGGTGGTTAATGAA+GGG | 0.592112 | 1_2:-6878539 | Msa0052580:CDS |
| GAATATGAAGAATATTGAGA+TGG | 0.602572 | 1_2:-6878832 | Msa0052580:CDS |
| TGAATCATCAATTGTTGCCA+TGG | 0.622110 | 1_2:-6878889 | Msa0052580:CDS |
| CGAACAAAAGAAATATCATG+AGG | 0.627048 | 1_2:+6879038 | None:intergenic |
| AAGCTTGAGTCCTAAGTCAA+CGG | 0.627738 | 1_2:-6878928 | Msa0052580:CDS |
| TTAGTTTCTCCAAGAAGTGG+TGG | 0.628810 | 1_2:-6878450 | Msa0052580:CDS |
| ACAAATGGCAAATAGAACAA+TGG | 0.651573 | 1_2:+6878804 | None:intergenic |
| GAACAAAAGAAATATCATGA+GGG | 0.654561 | 1_2:+6879039 | None:intergenic |
| AATAACCCTTATTCCACACG+TGG | 0.697457 | 1_2:-6879131 | Msa0052580:CDS |
| TGTAGTGAATAATGACGGGG+TGG | 0.710681 | 1_2:-6878619 | Msa0052580:CDS |
| GGATGTAGTGAATAATGACG+GGG | 0.789564 | 1_2:-6878622 | Msa0052580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTGATTTAAATGATAAA+AGG | - | chr1_2:6878540-6878559 | Msa0052580:CDS | 15.0% |
| !! | TATCTGATTTAAATGATAAA+AGG | - | chr1_2:6878540-6878559 | Msa0052580:CDS | 15.0% |
| !! | AAAATCATTATCACAACAAA+TGG | + | chr1_2:6878839-6878858 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTGATAATGATTT+TGG | - | chr1_2:6878838-6878857 | Msa0052580:CDS | 20.0% |
| !! | AAGAAAAAAGATTATGTTAG+AGG | - | chr1_2:6879052-6879071 | Msa0052580:CDS | 20.0% |
| !! | AGAAAAAAGATTATGTTAGA+GGG | - | chr1_2:6879053-6879072 | Msa0052580:CDS | 20.0% |
| !! | AAAATCATTATCACAACAAA+TGG | + | chr1_2:6878839-6878858 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTGATAATGATTT+TGG | - | chr1_2:6878838-6878857 | Msa0052580:CDS | 20.0% |
| !! | AAGAAAAAAGATTATGTTAG+AGG | - | chr1_2:6879052-6879071 | Msa0052580:CDS | 20.0% |
| !! | AGAAAAAAGATTATGTTAGA+GGG | - | chr1_2:6879053-6879072 | Msa0052580:CDS | 20.0% |
| !! | CTTTTCTTTTGTATCTTCTA+GGG | + | chr1_2:6878466-6878485 | None:intergenic | 25.0% |
| !! | TCTTTTCTTTTGTATCTTCT+AGG | + | chr1_2:6878467-6878486 | None:intergenic | 25.0% |
| ! | GAACAAAAGAAATATCATGA+GGG | + | chr1_2:6878589-6878608 | None:intergenic | 25.0% |
| !! | TTTTCACCTTAACAACAATA+GGG | + | chr1_2:6878643-6878662 | None:intergenic | 25.0% |
| !! | TTTTTCACCTTAACAACAAT+AGG | + | chr1_2:6878644-6878663 | None:intergenic | 25.0% |
| ! | GAATATGAAGAATATTGAGA+TGG | - | chr1_2:6878793-6878812 | Msa0052580:CDS | 25.0% |
| !! | TAATTTTCACTTGTATTCTG+TGG | - | chr1_2:6878894-6878913 | Msa0052580:CDS | 25.0% |
| ! | GATTTAATATCCTTCAAAGT+TGG | + | chr1_2:6878929-6878948 | None:intergenic | 25.0% |
| ! | AAGAAAAGAGATTATGTTAG+AGG | - | chr1_2:6878962-6878981 | Msa0052580:CDS | 25.0% |
| ! | AGAAAGATTATGTTAGAAGA+TGG | - | chr1_2:6879119-6879138 | Msa0052580:CDS | 25.0% |
| ! | AAAATGGTTACTACTAATGA+TGG | - | chr1_2:6879151-6879170 | Msa0052580:CDS | 25.0% |
| !! | CTTTTCTTTTGTATCTTCTA+GGG | + | chr1_2:6878466-6878485 | None:intergenic | 25.0% |
| !! | TCTTTTCTTTTGTATCTTCT+AGG | + | chr1_2:6878467-6878486 | None:intergenic | 25.0% |
| ! | GAACAAAAGAAATATCATGA+GGG | + | chr1_2:6878589-6878608 | None:intergenic | 25.0% |
| !! | TTTTCACCTTAACAACAATA+GGG | + | chr1_2:6878643-6878662 | None:intergenic | 25.0% |
| !! | TTTTTCACCTTAACAACAAT+AGG | + | chr1_2:6878644-6878663 | None:intergenic | 25.0% |
| ! | GAATATGAAGAATATTGAGA+TGG | - | chr1_2:6878793-6878812 | Msa0052580:CDS | 25.0% |
| !! | TAATTTTCACTTGTATTCTG+TGG | - | chr1_2:6878894-6878913 | Msa0052580:CDS | 25.0% |
| ! | GATTTAATATCCTTCAAAGT+TGG | + | chr1_2:6878929-6878948 | None:intergenic | 25.0% |
| ! | AAGAAAAGAGATTATGTTAG+AGG | - | chr1_2:6878962-6878981 | Msa0052580:CDS | 25.0% |
| ! | AGAAAGATTATGTTAGAAGA+TGG | - | chr1_2:6879119-6879138 | Msa0052580:CDS | 25.0% |
| ! | AAAATGGTTACTACTAATGA+TGG | - | chr1_2:6879151-6879170 | Msa0052580:CDS | 25.0% |
| TGAATGTTCCACAAACAAAA+GGG | + | chr1_2:6878397-6878416 | None:intergenic | 30.0% | |
| TTGAATGTTCCACAAACAAA+AGG | + | chr1_2:6878398-6878417 | None:intergenic | 30.0% | |
| !! | AAAGTGCTGAAAATTTATCC+AGG | + | chr1_2:6878520-6878539 | None:intergenic | 30.0% |
| CGAACAAAAGAAATATCATG+AGG | + | chr1_2:6878590-6878609 | None:intergenic | 30.0% | |
| !! | TTTTGTCCCTATTGTTGTTA+AGG | - | chr1_2:6878634-6878653 | Msa0052580:CDS | 30.0% |
| !! | GTTTCACTACTTTTAACTCT+TGG | + | chr1_2:6878673-6878692 | None:intergenic | 30.0% |
| TTCCATGAAATTCTCTTCTT+GGG | + | chr1_2:6878776-6878795 | None:intergenic | 30.0% | |
| ATTCCATGAAATTCTCTTCT+TGG | + | chr1_2:6878777-6878796 | None:intergenic | 30.0% | |
| ACAAATGGCAAATAGAACAA+TGG | + | chr1_2:6878824-6878843 | None:intergenic | 30.0% | |
| GTATGTTATTCCAACTTTGA+AGG | - | chr1_2:6878916-6878935 | Msa0052580:CDS | 30.0% | |
| ATGGATGTAGTGAATAATGA+CGG | - | chr1_2:6879001-6879020 | Msa0052580:CDS | 30.0% | |
| AGGGTTTAGTGAAAAAAAGA+TGG | - | chr1_2:6879072-6879091 | Msa0052580:CDS | 30.0% | |
| GTTTAGTGAAAAAAAGATGG+TGG | - | chr1_2:6879075-6879094 | Msa0052580:CDS | 30.0% | |
| ! | AAAAAGATGGTGGTTAATGA+AGG | - | chr1_2:6879085-6879104 | Msa0052580:CDS | 30.0% |
| ! | AAAAGATGGTGGTTAATGAA+GGG | - | chr1_2:6879086-6879105 | Msa0052580:CDS | 30.0% |
| ! | TTTTGCTTGAATCTTGTTCT+TGG | + | chr1_2:6879218-6879237 | None:intergenic | 30.0% |
| AACATTCACACAAGAAAAGT+TGG | - | chr1_2:6879236-6879255 | Msa0052580:CDS | 30.0% | |
| TGAATGTTCCACAAACAAAA+GGG | + | chr1_2:6878397-6878416 | None:intergenic | 30.0% | |
| TTGAATGTTCCACAAACAAA+AGG | + | chr1_2:6878398-6878417 | None:intergenic | 30.0% | |
| !! | AAAGTGCTGAAAATTTATCC+AGG | + | chr1_2:6878520-6878539 | None:intergenic | 30.0% |
| CGAACAAAAGAAATATCATG+AGG | + | chr1_2:6878590-6878609 | None:intergenic | 30.0% | |
| !! | TTTTGTCCCTATTGTTGTTA+AGG | - | chr1_2:6878634-6878653 | Msa0052580:CDS | 30.0% |
| !! | GTTTCACTACTTTTAACTCT+TGG | + | chr1_2:6878673-6878692 | None:intergenic | 30.0% |
| TTCCATGAAATTCTCTTCTT+GGG | + | chr1_2:6878776-6878795 | None:intergenic | 30.0% | |
| ATTCCATGAAATTCTCTTCT+TGG | + | chr1_2:6878777-6878796 | None:intergenic | 30.0% | |
| ACAAATGGCAAATAGAACAA+TGG | + | chr1_2:6878824-6878843 | None:intergenic | 30.0% | |
| GTATGTTATTCCAACTTTGA+AGG | - | chr1_2:6878916-6878935 | Msa0052580:CDS | 30.0% | |
| ATGGATGTAGTGAATAATGA+CGG | - | chr1_2:6879001-6879020 | Msa0052580:CDS | 30.0% | |
| AGGGTTTAGTGAAAAAAAGA+TGG | - | chr1_2:6879072-6879091 | Msa0052580:CDS | 30.0% | |
| GTTTAGTGAAAAAAAGATGG+TGG | - | chr1_2:6879075-6879094 | Msa0052580:CDS | 30.0% | |
| ! | AAAAAGATGGTGGTTAATGA+AGG | - | chr1_2:6879085-6879104 | Msa0052580:CDS | 30.0% |
| ! | AAAAGATGGTGGTTAATGAA+GGG | - | chr1_2:6879086-6879105 | Msa0052580:CDS | 30.0% |
| ! | TTTTGCTTGAATCTTGTTCT+TGG | + | chr1_2:6879218-6879237 | None:intergenic | 30.0% |
| AACATTCACACAAGAAAAGT+TGG | - | chr1_2:6879236-6879255 | Msa0052580:CDS | 30.0% | |
| !! | ATGTTGAACCCTTTTGTTTG+TGG | - | chr1_2:6878386-6878405 | Msa0052580:CDS | 35.0% |
| CATAGTTCATCATCATCTTC+TGG | + | chr1_2:6878422-6878441 | None:intergenic | 35.0% | |
| !! | TATCTTCTAGGGCTTGAATT+AGG | + | chr1_2:6878455-6878474 | None:intergenic | 35.0% |
| TGAATCATCAATTGTTGCCA+TGG | - | chr1_2:6878736-6878755 | Msa0052580:CDS | 35.0% | |
| ATGAAATTCTCTTCTTGGGT+TGG | + | chr1_2:6878772-6878791 | None:intergenic | 35.0% | |
| AACCCAAGAAGAGAATTTCA+TGG | - | chr1_2:6878771-6878790 | Msa0052580:CDS | 35.0% | |
| !!! | TTGGTTTTGTTGACTGTGTT+TGG | - | chr1_2:6878857-6878876 | Msa0052580:CDS | 35.0% |
| AGGTTTGAGTGAGAAGAAAA+TGG | - | chr1_2:6878982-6879001 | Msa0052580:CDS | 35.0% | |
| TGGATGTAGTGAATAATGAC+GGG | - | chr1_2:6879002-6879021 | Msa0052580:CDS | 35.0% | |
| AAGATGGAGTGAGAAGAAAA+TGG | - | chr1_2:6879135-6879154 | Msa0052580:CDS | 35.0% | |
| !! | ATGTTGAACCCTTTTGTTTG+TGG | - | chr1_2:6878386-6878405 | Msa0052580:CDS | 35.0% |
| CATAGTTCATCATCATCTTC+TGG | + | chr1_2:6878422-6878441 | None:intergenic | 35.0% | |
| !! | TATCTTCTAGGGCTTGAATT+AGG | + | chr1_2:6878455-6878474 | None:intergenic | 35.0% |
| TGAATCATCAATTGTTGCCA+TGG | - | chr1_2:6878736-6878755 | Msa0052580:CDS | 35.0% | |
| ATGAAATTCTCTTCTTGGGT+TGG | + | chr1_2:6878772-6878791 | None:intergenic | 35.0% | |
| AACCCAAGAAGAGAATTTCA+TGG | - | chr1_2:6878771-6878790 | Msa0052580:CDS | 35.0% | |
| !!! | TTGGTTTTGTTGACTGTGTT+TGG | - | chr1_2:6878857-6878876 | Msa0052580:CDS | 35.0% |
| AGGTTTGAGTGAGAAGAAAA+TGG | - | chr1_2:6878982-6879001 | Msa0052580:CDS | 35.0% | |
| TGGATGTAGTGAATAATGAC+GGG | - | chr1_2:6879002-6879021 | Msa0052580:CDS | 35.0% | |
| AAGATGGAGTGAGAAGAAAA+TGG | - | chr1_2:6879135-6879154 | Msa0052580:CDS | 35.0% | |
| AATAACCCTTATTCCACACG+TGG | - | chr1_2:6878494-6878513 | Msa0052580:CDS | 40.0% | |
| AAGCTTGAGTCCTAAGTCAA+CGG | - | chr1_2:6878697-6878716 | Msa0052580:CDS | 40.0% | |
| !!! | GACTTTTTCTCCGTTGACTT+AGG | + | chr1_2:6878710-6878729 | None:intergenic | 40.0% |
| GGATGTAGTGAATAATGACG+GGG | - | chr1_2:6879003-6879022 | Msa0052580:CDS | 40.0% | |
| GGGTGGTGAAGAAAAATGAA+GGG | - | chr1_2:6879023-6879042 | Msa0052580:CDS | 40.0% | |
| GGTGGTGAAGAAAAATGAAG+GGG | - | chr1_2:6879024-6879043 | Msa0052580:CDS | 40.0% | |
| !! | GGATTAGTTTCTCCAAGAAG+TGG | - | chr1_2:6879172-6879191 | Msa0052580:CDS | 40.0% |
| TTAGTTTCTCCAAGAAGTGG+TGG | - | chr1_2:6879175-6879194 | Msa0052580:CDS | 40.0% | |
| TCAAAATCACCACCACTTCT+TGG | + | chr1_2:6879187-6879206 | None:intergenic | 40.0% | |
| AATAACCCTTATTCCACACG+TGG | - | chr1_2:6878494-6878513 | Msa0052580:CDS | 40.0% | |
| AAGCTTGAGTCCTAAGTCAA+CGG | - | chr1_2:6878697-6878716 | Msa0052580:CDS | 40.0% | |
| !!! | GACTTTTTCTCCGTTGACTT+AGG | + | chr1_2:6878710-6878729 | None:intergenic | 40.0% |
| GGATGTAGTGAATAATGACG+GGG | - | chr1_2:6879003-6879022 | Msa0052580:CDS | 40.0% | |
| GGGTGGTGAAGAAAAATGAA+GGG | - | chr1_2:6879023-6879042 | Msa0052580:CDS | 40.0% | |
| GGTGGTGAAGAAAAATGAAG+GGG | - | chr1_2:6879024-6879043 | Msa0052580:CDS | 40.0% | |
| !! | GGATTAGTTTCTCCAAGAAG+TGG | - | chr1_2:6879172-6879191 | Msa0052580:CDS | 40.0% |
| TTAGTTTCTCCAAGAAGTGG+TGG | - | chr1_2:6879175-6879194 | Msa0052580:CDS | 40.0% | |
| TCAAAATCACCACCACTTCT+TGG | + | chr1_2:6879187-6879206 | None:intergenic | 40.0% | |
| AAATTTATCCAGGCCACGTG+TGG | + | chr1_2:6878510-6878529 | None:intergenic | 45.0% | |
| GACTTAGGACTCAAGCTTCT+TGG | + | chr1_2:6878695-6878714 | None:intergenic | 45.0% | |
| !! | GGGTTGGTTTCTTTCTTCCA+TGG | + | chr1_2:6878756-6878775 | None:intergenic | 45.0% |
| ! | TGTAGTGAATAATGACGGGG+TGG | - | chr1_2:6879006-6879025 | Msa0052580:CDS | 45.0% |
| GGGGTGGTGAAGAAAAATGA+AGG | - | chr1_2:6879022-6879041 | Msa0052580:CDS | 45.0% | |
| GGTGAAGAAAAATGAAGGGG+TGG | - | chr1_2:6879027-6879046 | Msa0052580:CDS | 45.0% | |
| AAATTTATCCAGGCCACGTG+TGG | + | chr1_2:6878510-6878529 | None:intergenic | 45.0% | |
| GACTTAGGACTCAAGCTTCT+TGG | + | chr1_2:6878695-6878714 | None:intergenic | 45.0% | |
| !! | GGGTTGGTTTCTTTCTTCCA+TGG | + | chr1_2:6878756-6878775 | None:intergenic | 45.0% |
| ! | TGTAGTGAATAATGACGGGG+TGG | - | chr1_2:6879006-6879025 | Msa0052580:CDS | 45.0% |
| GGGGTGGTGAAGAAAAATGA+AGG | - | chr1_2:6879022-6879041 | Msa0052580:CDS | 45.0% | |
| GGTGAAGAAAAATGAAGGGG+TGG | - | chr1_2:6879027-6879046 | Msa0052580:CDS | 45.0% | |
| CCAGGCCACGTGTGGAATAA+GGG | + | chr1_2:6878502-6878521 | None:intergenic | 55.0% | |
| TCCAGGCCACGTGTGGAATA+AGG | + | chr1_2:6878503-6878522 | None:intergenic | 55.0% | |
| CCAGGCCACGTGTGGAATAA+GGG | + | chr1_2:6878502-6878521 | None:intergenic | 55.0% | |
| TCCAGGCCACGTGTGGAATA+AGG | + | chr1_2:6878503-6878522 | None:intergenic | 55.0% | |
| CCCTTATTCCACACGTGGCC+TGG | - | chr1_2:6878499-6878518 | Msa0052580:CDS | 60.0% | |
| CCCTTATTCCACACGTGGCC+TGG | - | chr1_2:6878499-6878518 | Msa0052580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6878386 | 6879261 | 6878386 | ID=Msa0052580;Name=Msa0052580 |
| chr1_2 | mRNA | 6878386 | 6879261 | 6878386 | ID=Msa0052580-mRNA-1;Parent=Msa0052580;Name=Msa0052580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|291 |
| chr1_2 | exon | 6878386 | 6879261 | 6878386 | ID=Msa0052580-mRNA-1:exon:2288;Parent=Msa0052580-mRNA-1 |
| chr1_2 | CDS | 6878386 | 6879261 | 6878386 | ID=Msa0052580-mRNA-1:cds;Parent=Msa0052580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
