Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173260 | ABC59105.1 | 80.000 | 80 | 15 | 1 | 1 | 80 | 258 | 336 | 2.23e-34 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173260 | sp|A0A2K9RG08|CYBK1_VITAC | 35.714 | 84 | 53 | 1 | 1 | 84 | 261 | 343 | 1.66e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035650 | Msa1173260 | 0.804602 | 1.996921e-49 | -8.615850e-47 |
| Msa0083730 | Msa1173260 | 0.812105 | 5.011684e-51 | -8.615850e-47 |
| Msa0083750 | Msa1173260 | 0.847620 | 1.030490e-59 | -8.615850e-47 |
| Msa0176150 | Msa1173260 | 0.832028 | 1.193960e-55 | -8.615850e-47 |
| Msa1173230 | Msa1173260 | 0.824463 | 7.960866e-54 | -8.615850e-47 |
| Msa1173250 | Msa1173260 | 0.814323 | 1.633687e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173260 | MtrunA17_Chr1g0197851 | 80.000 | 80 | 15 | 1 | 1 | 80 | 258 | 336 | 2.26e-38 | 133 |
| Msa1173260 | MtrunA17_Chr1g0197891 | 80.000 | 80 | 15 | 1 | 1 | 80 | 258 | 336 | 4.16e-38 | 132 |
| Msa1173260 | MtrunA17_Chr1g0197881 | 78.750 | 80 | 16 | 1 | 1 | 80 | 257 | 335 | 6.69e-38 | 132 |
| Msa1173260 | MtrunA17_Chr1g0197871 | 75.000 | 80 | 19 | 1 | 1 | 80 | 258 | 336 | 6.98e-36 | 126 |
| Msa1173260 | MtrunA17_Chr1g0176851 | 50.000 | 80 | 39 | 1 | 1 | 80 | 141 | 219 | 1.17e-23 | 90.1 |
| Msa1173260 | MtrunA17_Chr2g0314721 | 47.500 | 80 | 41 | 1 | 1 | 80 | 270 | 348 | 9.31e-21 | 84.7 |
| Msa1173260 | MtrunA17_Chr2g0314731 | 46.250 | 80 | 42 | 1 | 1 | 80 | 259 | 337 | 2.10e-20 | 84.0 |
| Msa1173260 | MtrunA17_Chr1g0176831 | 53.968 | 63 | 29 | 0 | 1 | 63 | 289 | 351 | 3.77e-19 | 80.5 |
| Msa1173260 | MtrunA17_Chr5g0395331 | 41.250 | 80 | 46 | 1 | 1 | 80 | 266 | 344 | 3.44e-17 | 74.7 |
| Msa1173260 | MtrunA17_Chr5g0395381 | 40.000 | 80 | 45 | 2 | 1 | 80 | 236 | 312 | 1.65e-15 | 70.1 |
| Msa1173260 | MtrunA17_Chr5g0395321 | 38.750 | 80 | 46 | 2 | 1 | 80 | 261 | 337 | 6.24e-15 | 68.6 |
| Msa1173260 | MtrunA17_Chr8g0355961 | 44.737 | 76 | 41 | 1 | 1 | 75 | 267 | 342 | 6.45e-15 | 68.2 |
| Msa1173260 | MtrunA17_Chr8g0356001 | 40.000 | 80 | 46 | 2 | 1 | 79 | 267 | 345 | 2.17e-13 | 63.9 |
| Msa1173260 | MtrunA17_Chr1g0205371 | 47.222 | 72 | 37 | 1 | 1 | 72 | 261 | 331 | 4.69e-13 | 63.2 |
| Msa1173260 | MtrunA17_Chr1g0205361 | 48.438 | 64 | 32 | 1 | 1 | 64 | 260 | 322 | 2.43e-12 | 60.8 |
| Msa1173260 | MtrunA17_Chr1g0160851 | 44.595 | 74 | 40 | 1 | 2 | 75 | 261 | 333 | 4.86e-12 | 60.1 |
| Msa1173260 | MtrunA17_Chr4g0039901 | 38.462 | 78 | 47 | 1 | 1 | 78 | 261 | 337 | 2.78e-11 | 58.2 |
| Msa1173260 | MtrunA17_Chr1g0160861 | 44.000 | 75 | 41 | 1 | 1 | 75 | 101 | 174 | 3.40e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173260 | AT3G61040.1 | 43.750 | 64 | 36 | 0 | 2 | 65 | 258 | 321 | 2.35e-13 | 64.3 |
| Msa1173260 | AT3G61040.2 | 49.091 | 55 | 28 | 0 | 11 | 65 | 267 | 321 | 9.34e-13 | 62.4 |
| Msa1173260 | AT2G45550.1 | 45.614 | 57 | 31 | 0 | 8 | 64 | 276 | 332 | 7.99e-11 | 57.0 |
Find 16 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCCAAAAGATGGATAAA+AGG | 0.344291 | 8_1:+3524465 | Msa1173260:CDS |
| TGACATGCTGGACACCTTGT+TGG | 0.472680 | 8_1:+3524427 | Msa1173260:CDS |
| CAAAGAAGATAGCCAAAAGA+TGG | 0.477952 | 8_1:+3524457 | Msa1173260:CDS |
| TAATAGGATCTGCTTGTGGC+GGG | 0.487312 | 8_1:+3524678 | Msa1173260:intron |
| GGAACGGAAACATCGGCATA+TGG | 0.488588 | 8_1:+3524699 | Msa1173260:CDS |
| TAGCATGCTATGCATGGATA+AGG | 0.503513 | 8_1:-3527025 | None:intergenic |
| GGATCTGCTTGTGGCGGGAA+CGG | 0.515535 | 8_1:+3524683 | Msa1173260:intron |
| GAGTGAAGTAGTACGCCATC+CGG | 0.517426 | 8_1:+3524737 | Msa1173260:CDS |
| CATCGGCATATGGATTAGAA+AGG | 0.524755 | 8_1:+3524709 | Msa1173260:CDS |
| CACAGATAGCATGCTATGCA+TGG | 0.537759 | 8_1:-3527031 | None:intergenic |
| CATAGCATGCTATCTGTGAA+TGG | 0.545014 | 8_1:+3527036 | Msa1173260:CDS |
| ATCGGCATATGGATTAGAAA+GGG | 0.547367 | 8_1:+3524710 | Msa1173260:CDS |
| TGTGGCGGGAACGGAAACAT+CGG | 0.614267 | 8_1:+3524692 | Msa1173260:CDS |
| TTAATAGGATCTGCTTGTGG+CGG | 0.618755 | 8_1:+3524677 | Msa1173260:intron |
| TTCTTTGGAAATGTCCAACA+AGG | 0.633000 | 8_1:-3524441 | None:intergenic |
| TGAAGTAGTACGCCATCCGG+AGG | 0.669492 | 8_1:+3524740 | Msa1173260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAATATTTTGTTCAA+TGG | + | chr8_1:3525488-3525507 | Msa1173260:intron | 10.0% |
| !!! | TTTTAAACTTAATAAAGATT+TGG | + | chr8_1:3525715-3525734 | Msa1173260:intron | 10.0% |
| !! | TATATACAAAATATAACTTA+AGG | + | chr8_1:3526307-3526326 | Msa1173260:intron | 10.0% |
| !! | AAAAATAATTTACAATGAAA+AGG | - | chr8_1:3526422-3526441 | None:intergenic | 10.0% |
| !! | AAAATTTAAGTAATTGAAAA+TGG | - | chr8_1:3526572-3526591 | None:intergenic | 10.0% |
| !!! | TTGGTAAATTTTTTTAAAAT+GGG | - | chr8_1:3526599-3526618 | None:intergenic | 10.0% |
| !!! | AACTTAATATACTTTGTTTA+GGG | - | chr8_1:3525252-3525271 | None:intergenic | 15.0% |
| !!! | TAACTTAATATACTTTGTTT+AGG | - | chr8_1:3525253-3525272 | None:intergenic | 15.0% |
| !!! | CGATTTACTTTTATTATATA+TGG | - | chr8_1:3525527-3525546 | None:intergenic | 15.0% |
| !!! | ATAATAAAAGTAAATCGTTT+TGG | + | chr8_1:3525530-3525549 | Msa1173260:intron | 15.0% |
| !! | TTAATATTGTTTAATACATC+TGG | - | chr8_1:3525664-3525683 | None:intergenic | 15.0% |
| !! | AAATATAAAATACATTGATC+TGG | - | chr8_1:3525698-3525717 | None:intergenic | 15.0% |
| !!! | ATTTTATATTATAGTTGAGT+CGG | + | chr8_1:3525792-3525811 | Msa1173260:intron | 15.0% |
| !!! | AAAAAACTTTCAAGTTTATA+TGG | + | chr8_1:3525874-3525893 | Msa1173260:intron | 15.0% |
| !! | AAAATGTTGTAAATAACTAT+CGG | + | chr8_1:3525908-3525927 | Msa1173260:intron | 15.0% |
| !!! | GTTGGTAAATTTTTTTAAAA+TGG | - | chr8_1:3526600-3526619 | None:intergenic | 15.0% |
| !!! | TTTATGTTTAAATGTAGTTT+TGG | - | chr8_1:3526803-3526822 | None:intergenic | 15.0% |
| !! | AGACTAAATATTATATTCAA+GGG | + | chr8_1:3526885-3526904 | Msa1173260:intron | 15.0% |
| !!! | GTGACTATTGTAATTTTAAT+AGG | + | chr8_1:3524662-3524681 | Msa1173260:intron | 20.0% |
| !!! | TTTCAACTTTCAAGTTTATA+TGG | + | chr8_1:3525840-3525859 | Msa1173260:intron | 20.0% |
| !!! | AGCATTATTTTTATTTTCGA+TGG | + | chr8_1:3526143-3526162 | Msa1173260:intron | 20.0% |
| !!! | GCATTATTTTTATTTTCGAT+GGG | + | chr8_1:3526144-3526163 | Msa1173260:intron | 20.0% |
| !!! | ATTGATTTATTCTTTCGTTT+TGG | - | chr8_1:3526170-3526189 | None:intergenic | 20.0% |
| !! | GGAAAATACAATAGATAATT+AGG | + | chr8_1:3526344-3526363 | Msa1173260:intron | 20.0% |
| !! | ATGTTAAATCAAAGACTTAA+TGG | + | chr8_1:3526519-3526538 | Msa1173260:intron | 20.0% |
| !! | ATTTAAGTAATTGAAAATGG+AGG | - | chr8_1:3526569-3526588 | None:intergenic | 20.0% |
| !! | AGATGATCAAAATTATTAGT+TGG | - | chr8_1:3526618-3526637 | None:intergenic | 20.0% |
| !! | GAGACTAAATATTATATTCA+AGG | + | chr8_1:3526884-3526903 | Msa1173260:intron | 20.0% |
| !!! | GTATTTTGTATATTCAGTAT+TGG | + | chr8_1:3526970-3526989 | Msa1173260:intron | 20.0% |
| !! | TTTTCACCAGAAAGATTTTT+GGG | + | chr8_1:3525023-3525042 | Msa1173260:intron | 25.0% |
| !!! | ATTTTCAAGTTTCCAATCAA+AGG | - | chr8_1:3525174-3525193 | None:intergenic | 25.0% |
| ! | TTTGATTGGAAACTTGAAAA+TGG | + | chr8_1:3525173-3525192 | Msa1173260:intron | 25.0% |
| ! | AACAACAAACTAAATAGACT+TGG | - | chr8_1:3525354-3525373 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGTTGTTTGAGTA+TGG | + | chr8_1:3525360-3525379 | Msa1173260:intron | 25.0% |
| !!! | TTAGTTTGTTGTTTGAGTAT+GGG | + | chr8_1:3525361-3525380 | Msa1173260:intron | 25.0% |
| !! | GTCTTAAGAGTATAATTGAA+AGG | - | chr8_1:3525569-3525588 | None:intergenic | 25.0% |
| !!! | TTTGATGAATCTGGTTTTAA+GGG | + | chr8_1:3525738-3525757 | Msa1173260:intron | 25.0% |
| ! | TTGAAAGTTGAAACTTGAAA+GGG | - | chr8_1:3525833-3525852 | None:intergenic | 25.0% |
| !!! | CTGAAGTTCTGAAAAATAAA+TGG | - | chr8_1:3526032-3526051 | None:intergenic | 25.0% |
| !!! | CATTTATTTTTCAGAACTTC+AGG | + | chr8_1:3526030-3526049 | Msa1173260:intron | 25.0% |
| !! | ATTAATTTGACCAAGAATTG+TGG | - | chr8_1:3526381-3526400 | None:intergenic | 25.0% |
| ! | ATATGATTATTGCAGATACT+TGG | + | chr8_1:3526494-3526513 | Msa1173260:intron | 25.0% |
| ! | AAAATTGCACAATGGAAAAT+GGG | + | chr8_1:3526744-3526763 | Msa1173260:intron | 25.0% |
| ATAGCCAAAAGATGGATAAA+AGG | + | chr8_1:3524465-3524484 | Msa1173260:CDS | 30.0% | |
| GAAATTCTTGCACGTTTAAT+TGG | - | chr8_1:3524576-3524595 | None:intergenic | 30.0% | |
| !! | ATTTTAATAGGATCTGCTTG+TGG | + | chr8_1:3524674-3524693 | Msa1173260:intron | 30.0% |
| AAAAGCAAAGAAAGAACTAG+AGG | + | chr8_1:3524770-3524789 | Msa1173260:intron | 30.0% | |
| TCAATATCTGATTCCTCAAT+TGG | - | chr8_1:3524816-3524835 | None:intergenic | 30.0% | |
| TTGAGGAATCAGATATTGAT+AGG | + | chr8_1:3524817-3524836 | Msa1173260:intron | 30.0% | |
| TTTATCACTGCATTCAAGTA+TGG | - | chr8_1:3524846-3524865 | None:intergenic | 30.0% | |
| ! | ACAAGTTCTGATCAATGAAT+GGG | + | chr8_1:3524962-3524981 | Msa1173260:intron | 30.0% |
| TATTGGTAGAACAGACATAT+GGG | + | chr8_1:3524986-3525005 | Msa1173260:intron | 30.0% | |
| ! | GTTTTCACCAGAAAGATTTT+TGG | + | chr8_1:3525022-3525041 | Msa1173260:intron | 30.0% |
| TTGGAAACTTGAAAATGGTA+TGG | + | chr8_1:3525178-3525197 | Msa1173260:intron | 30.0% | |
| CACAAAGAGATTATTCAACA+AGG | - | chr8_1:3525280-3525299 | None:intergenic | 30.0% | |
| AACAAACTAAATAGACTTGG+AGG | - | chr8_1:3525351-3525370 | None:intergenic | 30.0% | |
| !! | TAGTTTGTTGTTTGAGTATG+GGG | + | chr8_1:3525362-3525381 | Msa1173260:intron | 30.0% |
| ATGGGGATGTAAAATATGTA+TGG | + | chr8_1:3525379-3525398 | Msa1173260:intron | 30.0% | |
| ACTCTTAAGACAACTTTGAT+TGG | + | chr8_1:3525578-3525597 | Msa1173260:intron | 30.0% | |
| TTTGATTGGAAGCTTGAAAA+TGG | + | chr8_1:3525592-3525611 | Msa1173260:intron | 30.0% | |
| !! | AAGATTTGGTTTGATGAATC+TGG | + | chr8_1:3525729-3525748 | Msa1173260:intron | 30.0% |
| !!! | GTTTGATGAATCTGGTTTTA+AGG | + | chr8_1:3525737-3525756 | Msa1173260:intron | 30.0% |
| CTTGAAAGTTGAAACTTGAA+AGG | - | chr8_1:3525834-3525853 | None:intergenic | 30.0% | |
| ! | ATAACTTAAGGCACTAAGAA+AGG | + | chr8_1:3526319-3526338 | Msa1173260:intron | 30.0% |
| ! | TAACTTAAGGCACTAAGAAA+GGG | + | chr8_1:3526320-3526339 | Msa1173260:intron | 30.0% |
| ATTTGACGACATGATAATAC+AGG | - | chr8_1:3526676-3526695 | None:intergenic | 30.0% | |
| GTATTATCATGTCGTCAAAT+TGG | + | chr8_1:3526676-3526695 | Msa1173260:intron | 30.0% | |
| AGAATACCAAAATTGCACAA+TGG | + | chr8_1:3526736-3526755 | Msa1173260:intron | 30.0% | |
| ! | CATTTTCCATTGTGCAATTT+TGG | - | chr8_1:3526745-3526764 | None:intergenic | 30.0% |
| CAAAATTGCACAATGGAAAA+TGG | + | chr8_1:3526743-3526762 | Msa1173260:intron | 30.0% | |
| !!! | GTAGTTTTGGTCTTTCATTT+TGG | - | chr8_1:3526790-3526809 | None:intergenic | 30.0% |
| ! | ACAAGTTCATTAGTCCATTT+TGG | - | chr8_1:3526850-3526869 | None:intergenic | 30.0% |
| ! | GAACTTGTTTCACTAGTTAT+AGG | + | chr8_1:3526862-3526881 | Msa1173260:intron | 30.0% |
| TGTCTCAAAAAATGACATGC+TGG | + | chr8_1:3524415-3524434 | Msa1173260:CDS | 35.0% | |
| ! | TTCTTTGGAAATGTCCAACA+AGG | - | chr8_1:3524444-3524463 | None:intergenic | 35.0% |
| !! | CATCTTTTGGCTATCTTCTT+TGG | - | chr8_1:3524459-3524478 | None:intergenic | 35.0% |
| CAAAGAAGATAGCCAAAAGA+TGG | + | chr8_1:3524457-3524476 | Msa1173260:CDS | 35.0% | |
| ! | TCTGCCTTTTATCCATCTTT+TGG | - | chr8_1:3524472-3524491 | None:intergenic | 35.0% |
| TTAAAGAGAGAGAGAGAGAT+AGG | - | chr8_1:3524523-3524542 | None:intergenic | 35.0% | |
| !! | ATCGGCATATGGATTAGAAA+GGG | + | chr8_1:3524710-3524729 | Msa1173260:CDS | 35.0% |
| !! | TTTGCTTTTGACATAACCTC+CGG | - | chr8_1:3524759-3524778 | None:intergenic | 35.0% |
| AAAGAACTAGAGGAAACCAT+TGG | + | chr8_1:3524780-3524799 | Msa1173260:intron | 35.0% | |
| !! | AATTGGTTTGCCTAATCCAA+TGG | - | chr8_1:3524799-3524818 | None:intergenic | 35.0% |
| ! | CACAAGTTCTGATCAATGAA+TGG | + | chr8_1:3524961-3524980 | Msa1173260:intron | 35.0% |
| CTATTGGTAGAACAGACATA+TGG | + | chr8_1:3524985-3525004 | Msa1173260:intron | 35.0% | |
| TCAGAACCCAAAAATCTTTC+TGG | - | chr8_1:3525032-3525051 | None:intergenic | 35.0% | |
| !! | GGTTCTGAAATTGATGTCAA+AGG | + | chr8_1:3525044-3525063 | Msa1173260:intron | 35.0% |
| ! | CATTTTAAGCTTACACCGTT+CGG | + | chr8_1:3525071-3525090 | Msa1173260:intron | 35.0% |
| TAGGATGTTGCATTTGATGT+TGG | + | chr8_1:3525133-3525152 | Msa1173260:intron | 35.0% | |
| AGGATGTTGCATTTGATGTT+GGG | + | chr8_1:3525134-3525153 | Msa1173260:intron | 35.0% | |
| CATTGATCAACTCCTTTGAT+TGG | + | chr8_1:3525159-3525178 | Msa1173260:intron | 35.0% | |
| TGAAAATGGTATGGAACCAA+AGG | + | chr8_1:3525187-3525206 | Msa1173260:intron | 35.0% | |
| ! | TATACTTTGTTTAGGGCAAC+TGG | - | chr8_1:3525245-3525264 | None:intergenic | 35.0% |
| TGTAACACCTTCTACCTTAA+GGG | + | chr8_1:3525298-3525317 | Msa1173260:intron | 35.0% | |
| AAAGATAAATGCACCCCTTA+AGG | - | chr8_1:3525315-3525334 | None:intergenic | 35.0% | |
| TTGGAAGCTTGAAAATGGTA+TGG | + | chr8_1:3525597-3525616 | Msa1173260:intron | 35.0% | |
| TGAAAATGGTATGGAAGCAA+AGG | + | chr8_1:3525606-3525625 | Msa1173260:intron | 35.0% | |
| ! | TACATCTGGAATAGCTCTTA+GGG | - | chr8_1:3525650-3525669 | None:intergenic | 35.0% |
| ! | ATACATCTGGAATAGCTCTT+AGG | - | chr8_1:3525651-3525670 | None:intergenic | 35.0% |
| AACAATTAAGCGCTCAAACT+AGG | - | chr8_1:3525947-3525966 | None:intergenic | 35.0% | |
| TTTCATTTGTAAGCAACGAC+AGG | + | chr8_1:3526063-3526082 | Msa1173260:intron | 35.0% | |
| ! | AACTTAAGGCACTAAGAAAG+GGG | + | chr8_1:3526321-3526340 | Msa1173260:intron | 35.0% |
| ! | CAAAGACTTAATGGCAGTTT+TGG | + | chr8_1:3526528-3526547 | Msa1173260:intron | 35.0% |
| ! | ATTAGTCCATTTTGGACAAC+GGG | - | chr8_1:3526842-3526861 | None:intergenic | 35.0% |
| ! | CATTAGTCCATTTTGGACAA+CGG | - | chr8_1:3526843-3526862 | None:intergenic | 35.0% |
| TTAATAGGATCTGCTTGTGG+CGG | + | chr8_1:3524677-3524696 | Msa1173260:intron | 40.0% | |
| !! | CATCGGCATATGGATTAGAA+AGG | + | chr8_1:3524709-3524728 | Msa1173260:CDS | 40.0% |
| CTAGAGGAAACCATTGGATT+AGG | + | chr8_1:3524786-3524805 | Msa1173260:intron | 40.0% | |
| ! | TGGATTAGGCAAACCAATTG+AGG | + | chr8_1:3524800-3524819 | Msa1173260:intron | 40.0% |
| GCAGGTTACACAATTCCAAA+AGG | + | chr8_1:3524936-3524955 | Msa1173260:intron | 40.0% | |
| ! | ATCAGAACTTGTGCACCTTT+TGG | - | chr8_1:3524954-3524973 | None:intergenic | 40.0% |
| !! | CTGATCAATGAATGGGCTAT+TGG | + | chr8_1:3524969-3524988 | Msa1173260:intron | 40.0% |
| TTGTCCAAGTTCATGTCCTT+TGG | - | chr8_1:3525206-3525225 | None:intergenic | 40.0% | |
| GTGTAACACCTTCTACCTTA+AGG | + | chr8_1:3525297-3525316 | Msa1173260:intron | 40.0% | |
| GTAACACCTTCTACCTTAAG+GGG | + | chr8_1:3525299-3525318 | Msa1173260:intron | 40.0% | |
| ! | ACATCTGGAATAGCTCTTAG+GGG | - | chr8_1:3525649-3525668 | None:intergenic | 40.0% |
| ! | ACTTAAGGCACTAAGAAAGG+GGG | + | chr8_1:3526322-3526341 | Msa1173260:intron | 40.0% |
| AAGTTGAGCTCCACAATTCT+TGG | + | chr8_1:3526368-3526387 | Msa1173260:intron | 40.0% | |
| TAGCATGCTATGCATGGATA+AGG | - | chr8_1:3527028-3527047 | None:intergenic | 40.0% | |
| CATAGCATGCTATCTGTGAA+TGG | + | chr8_1:3527036-3527055 | Msa1173260:CDS | 40.0% | |
| TAATAGGATCTGCTTGTGGC+GGG | + | chr8_1:3524678-3524697 | Msa1173260:intron | 45.0% | |
| ! | CTTTTGACATAACCTCCGGA+TGG | - | chr8_1:3524755-3524774 | None:intergenic | 45.0% |
| GCTTTCCTAGGAAGCAACAT+TGG | - | chr8_1:3524897-3524916 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCCTAGGAAAGCA+AGG | + | chr8_1:3524898-3524917 | Msa1173260:intron | 45.0% |
| GTTGCTTCCTAGGAAAGCAA+GGG | + | chr8_1:3524899-3524918 | Msa1173260:intron | 45.0% | |
| ACATCTACCCTTGCTTTCCT+AGG | - | chr8_1:3524909-3524928 | None:intergenic | 45.0% | |
| TAGGAAAGCAAGGGTAGATG+TGG | + | chr8_1:3524908-3524927 | Msa1173260:intron | 45.0% | |
| AGGGTAGATGTGGAAATAGC+AGG | + | chr8_1:3524918-3524937 | Msa1173260:intron | 45.0% | |
| ATACGTCTTCCACTTCCGAA+CGG | - | chr8_1:3525089-3525108 | None:intergenic | 45.0% | |
| AGTGGAAGACGTATATGTCC+TGG | + | chr8_1:3525095-3525114 | Msa1173260:intron | 45.0% | |
| TGCAACATCCTAACAGCAAG+TGG | - | chr8_1:3525125-3525144 | None:intergenic | 45.0% | |
| GGAACCAAAGGACATGAACT+TGG | + | chr8_1:3525199-3525218 | Msa1173260:intron | 45.0% | |
| AATGCACCCCTTAAGGTAGA+AGG | - | chr8_1:3525308-3525327 | None:intergenic | 45.0% | |
| GGAAGCAAAGGACATGAACT+TGG | + | chr8_1:3525618-3525637 | Msa1173260:intron | 45.0% | |
| ! | CTTAAGGCACTAAGAAAGGG+GGG | + | chr8_1:3526323-3526342 | Msa1173260:intron | 45.0% |
| ACCACCAGAAAACTATGAGC+TGG | + | chr8_1:3526916-3526935 | Msa1173260:intron | 45.0% | |
| ! | ACCAGCTCATAGTTTTCTGG+TGG | - | chr8_1:3526920-3526939 | None:intergenic | 45.0% |
| ! | CCAACCAGCTCATAGTTTTC+TGG | - | chr8_1:3526923-3526942 | None:intergenic | 45.0% |
| CCAGAAAACTATGAGCTGGT+TGG | + | chr8_1:3526920-3526939 | Msa1173260:intron | 45.0% | |
| CCCTTGATGCTCACTAACAT+GGG | - | chr8_1:3526946-3526965 | None:intergenic | 45.0% | |
| CCCATGTTAGTGAGCATCAA+GGG | + | chr8_1:3526943-3526962 | Msa1173260:intron | 45.0% | |
| TCCCTTGATGCTCACTAACA+TGG | - | chr8_1:3526947-3526966 | None:intergenic | 45.0% | |
| CACAGATAGCATGCTATGCA+TGG | - | chr8_1:3527034-3527053 | None:intergenic | 45.0% | |
| TGACATGCTGGACACCTTGT+TGG | + | chr8_1:3524427-3524446 | Msa1173260:CDS | 50.0% | |
| GGAACGGAAACATCGGCATA+TGG | + | chr8_1:3524699-3524718 | Msa1173260:CDS | 50.0% | |
| GAGTGAAGTAGTACGCCATC+CGG | + | chr8_1:3524737-3524756 | Msa1173260:CDS | 50.0% | |
| GAAGCAACATTGGAGCTGGA+GGG | - | chr8_1:3524887-3524906 | None:intergenic | 50.0% | |
| CTAGGAAGCAACATTGGAGC+TGG | - | chr8_1:3524891-3524910 | None:intergenic | 50.0% | |
| ! | CAGCTCCAATGTTGCTTCCT+AGG | + | chr8_1:3524889-3524908 | Msa1173260:intron | 50.0% |
| AAGCTTACACCGTTCGGAAG+TGG | + | chr8_1:3525077-3525096 | Msa1173260:intron | 50.0% | |
| ! | CATTTTGGACAACGGGAGCT+GGG | - | chr8_1:3526835-3526854 | None:intergenic | 50.0% |
| GCCCATGTTAGTGAGCATCA+AGG | + | chr8_1:3526942-3526961 | Msa1173260:intron | 50.0% | |
| ! | TGTGGCGGGAACGGAAACAT+CGG | + | chr8_1:3524692-3524711 | Msa1173260:CDS | 55.0% |
| TGAAGTAGTACGCCATCCGG+AGG | + | chr8_1:3524740-3524759 | Msa1173260:CDS | 55.0% | |
| GGAAGCAACATTGGAGCTGG+AGG | - | chr8_1:3524888-3524907 | None:intergenic | 55.0% | |
| CTAACAGCAAGTGGTGAGCC+AGG | - | chr8_1:3525116-3525135 | None:intergenic | 55.0% | |
| !! | CTGGCTCACCACTTGCTGTT+AGG | + | chr8_1:3525114-3525133 | Msa1173260:intron | 55.0% |
| ! | CCATTTTGGACAACGGGAGC+TGG | - | chr8_1:3526836-3526855 | None:intergenic | 55.0% |
| CCAGCTCCCGTTGTCCAAAA+TGG | + | chr8_1:3526833-3526852 | Msa1173260:intron | 55.0% | |
| ! | GGATCTGCTTGTGGCGGGAA+CGG | + | chr8_1:3524683-3524702 | Msa1173260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 3524395 | 3527077 | 3524395 | ID=Msa1173260;Name=Msa1173260 |
| chr8_1 | mRNA | 3524395 | 3527077 | 3524395 | ID=Msa1173260-mRNA-1;Parent=Msa1173260;Name=Msa1173260-mRNA-1;_AED=0.60;_eAED=0.60;_QI=0|0|0|0.33|1|1|6|0|93 |
| chr8_1 | exon | 3524395 | 3524508 | 3524395 | ID=Msa1173260-mRNA-1:exon:1262;Parent=Msa1173260-mRNA-1 |
| chr8_1 | exon | 3524684 | 3524761 | 3524684 | ID=Msa1173260-mRNA-1:exon:1263;Parent=Msa1173260-mRNA-1 |
| chr8_1 | exon | 3525699 | 3525704 | 3525699 | ID=Msa1173260-mRNA-1:exon:1264;Parent=Msa1173260-mRNA-1 |
| chr8_1 | exon | 3525806 | 3525813 | 3525806 | ID=Msa1173260-mRNA-1:exon:1265;Parent=Msa1173260-mRNA-1 |
| chr8_1 | exon | 3526044 | 3526051 | 3526044 | ID=Msa1173260-mRNA-1:exon:1266;Parent=Msa1173260-mRNA-1 |
| chr8_1 | exon | 3527010 | 3527077 | 3527010 | ID=Msa1173260-mRNA-1:exon:1267;Parent=Msa1173260-mRNA-1 |
| chr8_1 | CDS | 3524395 | 3524508 | 3524395 | ID=Msa1173260-mRNA-1:cds;Parent=Msa1173260-mRNA-1 |
| chr8_1 | CDS | 3524684 | 3524761 | 3524684 | ID=Msa1173260-mRNA-1:cds;Parent=Msa1173260-mRNA-1 |
| chr8_1 | CDS | 3525699 | 3525704 | 3525699 | ID=Msa1173260-mRNA-1:cds;Parent=Msa1173260-mRNA-1 |
| chr8_1 | CDS | 3525806 | 3525813 | 3525806 | ID=Msa1173260-mRNA-1:cds;Parent=Msa1173260-mRNA-1 |
| chr8_1 | CDS | 3526044 | 3526051 | 3526044 | ID=Msa1173260-mRNA-1:cds;Parent=Msa1173260-mRNA-1 |
| chr8_1 | CDS | 3527010 | 3527077 | 3527010 | ID=Msa1173260-mRNA-1:cds;Parent=Msa1173260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
