Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173400 | XP_003604371.1 | 97.143 | 280 | 7 | 1 | 1 | 279 | 1 | 280 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173400 | sp|Q9LVZ7|PDCT1_ARATH | 78.302 | 212 | 46 | 0 | 46 | 257 | 69 | 280 | 7.04e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173400 | G7JGX5 | 97.143 | 280 | 7 | 1 | 1 | 279 | 1 | 280 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0262480 | Msa1173400 | 0.804471 | 2.126397e-49 | -8.615850e-47 |
| Msa0530320 | Msa1173400 | 0.962754 | 2.954688e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173400 | MtrunA17_Chr4g0003201 | 97.143 | 280 | 7 | 1 | 1 | 279 | 1 | 280 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173400 | AT3G15820.1 | 78.302 | 212 | 46 | 0 | 46 | 257 | 69 | 280 | 7.15e-123 | 353 |
| Msa1173400 | AT3G15830.1 | 70.386 | 233 | 68 | 1 | 46 | 278 | 64 | 295 | 7.56e-118 | 340 |
Find 92 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTGTCTGCATTTCATTT+TGG | 0.166724 | 8_1:-3801951 | Msa1173400:three_prime_UTR |
| TGCAAACGAGTTATATATTA+TGG | 0.202134 | 8_1:-3803454 | Msa1173400:CDS |
| TTCTTCTCCACCCTTTGATT+TGG | 0.205170 | 8_1:-3804612 | Msa1173400:CDS |
| ACTACTACTGTTCATTGTTT+TGG | 0.215489 | 8_1:+3805026 | None:intergenic |
| TGTGGTTTGAATATATTTCT+AGG | 0.233839 | 8_1:+3801914 | None:intergenic |
| AAAGGGAAACACACAGAAAA+AGG | 0.257363 | 8_1:-3802268 | Msa1173400:three_prime_UTR |
| TCTTCTCCACCCTTTGATTT+GGG | 0.276299 | 8_1:-3804611 | Msa1173400:CDS |
| GTTAGAGTGATTGGTTTGAT+TGG | 0.280580 | 8_1:+3804817 | None:intergenic |
| TGTGGAATACACGCTCTTTA+TGG | 0.285794 | 8_1:-3804642 | Msa1173400:CDS |
| TTCAAACTCCTCCTCATGTT+TGG | 0.314633 | 8_1:+3802103 | None:intergenic |
| TGCAACCAAATCATGTTTAG+AGG | 0.340593 | 8_1:+3802314 | None:intergenic |
| TTAGAGTGATTGGTTTGATT+GGG | 0.342876 | 8_1:+3804818 | None:intergenic |
| GGAGGGGTATTTATAGAATT+CGG | 0.346281 | 8_1:+3804940 | None:intergenic |
| CTTCAGCTTCGTTCATGAAA+TGG | 0.346389 | 8_1:-3804745 | Msa1173400:CDS |
| AGGCCATTACACTATTGATT+TGG | 0.346538 | 8_1:-3802436 | Msa1173400:CDS |
| TCACCTGGGGCAATGGTAGC+TGG | 0.358861 | 8_1:+3803348 | None:intergenic |
| TACACTATTGATTTGGCTGT+TGG | 0.360274 | 8_1:-3802429 | Msa1173400:CDS |
| TTCGGGTCATGTGGCGGGTT+CGG | 0.364904 | 8_1:-3802559 | Msa1173400:CDS |
| CCATGCCTCTAAACATGATT+TGG | 0.379481 | 8_1:-3802319 | Msa1173400:CDS |
| TTGGCTGTTGGGCTAGGTGC+TGG | 0.395448 | 8_1:-3802417 | Msa1173400:CDS |
| GAAGAAGAATTCTTCGGCAT+TGG | 0.403432 | 8_1:+3804785 | None:intergenic |
| ATTGATTTGGCTGTTGGGCT+AGG | 0.406845 | 8_1:-3802423 | Msa1173400:CDS |
| GGGTGGTGTGTCTGCGTTTG+AGG | 0.411025 | 8_1:+3804840 | None:intergenic |
| TATATATTTGACTCTTTAGC+TGG | 0.413885 | 8_1:-3802393 | Msa1173400:CDS |
| TGGAATGGAATGAAGGCATT+AGG | 0.429999 | 8_1:+3804919 | None:intergenic |
| ACACTATTGATTTGGCTGTT+GGG | 0.430277 | 8_1:-3802428 | Msa1173400:CDS |
| AGAGGCGGCGCCGCCGTTCA+TGG | 0.431943 | 8_1:+3804883 | None:intergenic |
| CTGGTGTGGACTTTCCAGTT+GGG | 0.441942 | 8_1:-3802605 | Msa1173400:CDS |
| TAGAGTGATTGGTTTGATTG+GGG | 0.454594 | 8_1:+3804819 | None:intergenic |
| GAGGATGAAGAGGTGGGAGT+TGG | 0.456112 | 8_1:-3802514 | Msa1173400:CDS |
| TACACGTGGCAACACATCAT+TGG | 0.460436 | 8_1:-3804706 | Msa1173400:CDS |
| TTTACATGTCGTGGGATTTG+TGG | 0.464311 | 8_1:-3803380 | Msa1173400:CDS |
| CAAAGAGAAGAAGAATTCTT+CGG | 0.480975 | 8_1:+3804779 | None:intergenic |
| TCTGGTGTGGACTTTCCAGT+TGG | 0.481025 | 8_1:-3802606 | Msa1173400:CDS |
| TTGCAAGCTGTGAGGTTGCT+TGG | 0.481402 | 8_1:-3802465 | Msa1173400:CDS |
| AGAGTGATTGGTTTGATTGG+GGG | 0.483457 | 8_1:+3804820 | None:intergenic |
| TATAGAATTCGGAGAAAATG+AGG | 0.485490 | 8_1:+3804951 | None:intergenic |
| TTTGAGGACGGTGGCGTCAC+CGG | 0.494293 | 8_1:+3804856 | None:intergenic |
| GGGTTCGGTGATAGCTTCAT+TGG | 0.496149 | 8_1:-3802544 | Msa1173400:CDS |
| AATTTGAGACTGTACCCAAA+AGG | 0.497856 | 8_1:-3802286 | Msa1173400:three_prime_UTR |
| TGTTCTAGCTGCTCTTAATA+CGG | 0.502013 | 8_1:-3804531 | Msa1173400:intron |
| TTATGGACATGGTTAATTGA+AGG | 0.502135 | 8_1:-3803437 | Msa1173400:CDS |
| GCGCCGCCGTTCATGGTGGT+TGG | 0.505272 | 8_1:+3804890 | None:intergenic |
| ATGGAATGAAGGCATTAGGA+GGG | 0.507335 | 8_1:+3804923 | None:intergenic |
| CACCTGGGGCAATGGTAGCT+GGG | 0.507957 | 8_1:+3803349 | None:intergenic |
| TTACATGTCGTGGGATTTGT+GGG | 0.512699 | 8_1:-3803379 | Msa1173400:CDS |
| CGACAAAATCATCTCCCATC+CGG | 0.513619 | 8_1:+3802208 | None:intergenic |
| GAATGAATCACCTGGGGCAA+TGG | 0.515139 | 8_1:+3803341 | None:intergenic |
| ATTTGAGACTGTACCCAAAA+GGG | 0.515747 | 8_1:-3802285 | Msa1173400:three_prime_UTR |
| ACATGAGGAGGATGAAGAGG+TGG | 0.515861 | 8_1:-3802521 | Msa1173400:CDS |
| AAAATGAGGTTGTAAATTGA+CGG | 0.527236 | 8_1:+3804965 | None:intergenic |
| CATGAGGAGGATGAAGAGGT+GGG | 0.528033 | 8_1:-3802520 | Msa1173400:CDS |
| TGAAGAGGTGGGAGTTGGCA+TGG | 0.528699 | 8_1:-3802509 | Msa1173400:CDS |
| GAAAACAAAACCCAAATCAA+AGG | 0.528958 | 8_1:+3804601 | None:intergenic |
| CAGCCAAATCAATAGTGTAA+TGG | 0.530095 | 8_1:+3802433 | None:intergenic |
| TTCATGGTGGTTGGAGAATG+TGG | 0.541925 | 8_1:+3804899 | None:intergenic |
| CCAAATCATGTTTAGAGGCA+TGG | 0.542552 | 8_1:+3802319 | None:intergenic |
| AAAACAAAACCCAAATCAAA+GGG | 0.542870 | 8_1:+3804602 | None:intergenic |
| TTGTTGTAGCTCTAAAGTGT+AGG | 0.545152 | 8_1:-3802174 | Msa1173400:three_prime_UTR |
| GGTGTGTCTGCGTTTGAGGA+CGG | 0.546169 | 8_1:+3804844 | None:intergenic |
| CGAGTTATATATTATGGACA+TGG | 0.552668 | 8_1:-3803448 | Msa1173400:CDS |
| AGACCACAAGCAAACAAACA+CGG | 0.559564 | 8_1:+3804680 | None:intergenic |
| AATGGAATGAAGGCATTAGG+AGG | 0.560787 | 8_1:+3804922 | None:intergenic |
| CACCCAGCTACCATTGCCCC+AGG | 0.564037 | 8_1:-3803351 | Msa1173400:intron |
| AGAGCTGAGATTGTTGCTCT+AGG | 0.568049 | 8_1:+3803410 | None:intergenic |
| TCATGTTTGGATTCTAACAT+CGG | 0.577627 | 8_1:+3802116 | None:intergenic |
| CATCAACATCATAATAACTT+CGG | 0.578990 | 8_1:-3804993 | Msa1173400:five_prime_UTR |
| CATTCTCCAACCACCATGAA+CGG | 0.579463 | 8_1:-3804896 | Msa1173400:exon |
| GAGAATGTGGAATGGAATGA+AGG | 0.579583 | 8_1:+3804912 | None:intergenic |
| ATGCCGTGTTTGTTTGCTTG+TGG | 0.580559 | 8_1:-3804683 | Msa1173400:CDS |
| GTGTATGTGTGGATGCCGGA+TGG | 0.581183 | 8_1:-3802223 | Msa1173400:three_prime_UTR |
| TGGACATGAGGAGGATGAAG+AGG | 0.583975 | 8_1:-3802524 | Msa1173400:CDS |
| GTGAGGTTGCTTGGTACAAG+AGG | 0.585032 | 8_1:-3802456 | Msa1173400:CDS |
| TCAAAGGGTGGAGAAGAAGA+AGG | 0.587930 | 8_1:+3804617 | None:intergenic |
| ATGTGTGTATGTGTGGATGC+CGG | 0.594876 | 8_1:-3802227 | Msa1173400:three_prime_UTR |
| GGTGGTTGGAGAATGTGGAA+TGG | 0.605709 | 8_1:+3804904 | None:intergenic |
| TGTATGTGTGGATGCCGGAT+GGG | 0.607384 | 8_1:-3802222 | Msa1173400:three_prime_UTR |
| TTAGAGCTACAACAAAATCA+CGG | 0.613938 | 8_1:+3802182 | None:intergenic |
| GTAGGCAATGTGTGTATGTG+TGG | 0.619686 | 8_1:-3802234 | Msa1173400:three_prime_UTR |
| TGATAGCTTCATTGGACATG+AGG | 0.619875 | 8_1:-3802536 | Msa1173400:CDS |
| CTGGGGCAATGGTAGCTGGG+TGG | 0.623185 | 8_1:+3803352 | None:intergenic |
| GCTAGAACATTATTGAGCTG+AGG | 0.646448 | 8_1:+3804545 | None:intergenic |
| ACAAAACCCAAATCAAAGGG+TGG | 0.648382 | 8_1:+3804605 | None:intergenic |
| TAGCTTCATTGGACATGAGG+AGG | 0.656474 | 8_1:-3802533 | Msa1173400:CDS |
| GATGTTAGAATCCAAACATG+AGG | 0.660469 | 8_1:-3802114 | Msa1173400:three_prime_UTR |
| GTTAGAATCCAAACATGAGG+AGG | 0.660606 | 8_1:-3802111 | Msa1173400:three_prime_UTR |
| TGGAATGAAGGCATTAGGAG+GGG | 0.675852 | 8_1:+3804924 | None:intergenic |
| GGCGGCGCCGCCGTTCATGG+TGG | 0.676201 | 8_1:+3804886 | None:intergenic |
| TCTCCAACCACCATGAACGG+CGG | 0.680353 | 8_1:-3804893 | Msa1173400:exon |
| AATCTCAGATGTTGTACACG+TGG | 0.689946 | 8_1:-3804720 | Msa1173400:CDS |
| TGAATGTGTTGCAAGCTGTG+AGG | 0.703330 | 8_1:-3802473 | Msa1173400:CDS |
| GTGTCTGCGTTTGAGGACGG+TGG | 0.706981 | 8_1:+3804847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTTGATTTTTTTA+TGG | - | chr8_1:3802548-3802567 | Msa1173400:CDS | 10.0% |
| !!! | TTTTTTGTTGATTTTTTTAT+GGG | - | chr8_1:3802549-3802568 | Msa1173400:CDS | 10.0% |
| !!! | AGAATTGATTTTAATATTAT+TGG | - | chr8_1:3802912-3802931 | Msa1173400:intron | 10.0% |
| !!! | AATTACTACTAATAATTTTA+GGG | + | chr8_1:3803836-3803855 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTGAGTTAAAAAT+TGG | - | chr8_1:3802841-3802860 | Msa1173400:intron | 15.0% |
| !!! | TTGATTTTAATATTATTGGA+TGG | - | chr8_1:3802916-3802935 | Msa1173400:intron | 15.0% |
| !!! | TATGATGAATTTATTTTTGT+TGG | - | chr8_1:3803241-3803260 | Msa1173400:intron | 15.0% |
| !! | TTTAAAAAAATGAAACACTT+TGG | + | chr8_1:3803770-3803789 | None:intergenic | 15.0% |
| !!! | ATTACTACTAATAATTTTAG+GGG | + | chr8_1:3803835-3803854 | None:intergenic | 15.0% |
| !!! | GAATTACTACTAATAATTTT+AGG | + | chr8_1:3803837-3803856 | None:intergenic | 15.0% |
| !!! | CTTAATAAATTTGAAATTTG+AGG | + | chr8_1:3804188-3804207 | None:intergenic | 15.0% |
| !!! | GAATAATTCTTTTCTTTTTG+TGG | + | chr8_1:3801923-3801942 | None:intergenic | 20.0% |
| !!! | GTTTTTTTGCATTGTTTATT+TGG | - | chr8_1:3802661-3802680 | Msa1173400:intron | 20.0% |
| !!! | TTTTGGTGTTTTTTTTTGTT+TGG | - | chr8_1:3802715-3802734 | Msa1173400:intron | 20.0% |
| !!! | GATTTTTTGTTTGTTTCTAA+TGG | - | chr8_1:3802793-3802812 | Msa1173400:intron | 20.0% |
| !!! | TATCTCTGAATTGATTTTTT+TGG | - | chr8_1:3802817-3802836 | Msa1173400:intron | 20.0% |
| !!! | AAACTTTAAATTCTAGCTTT+AGG | + | chr8_1:3802983-3803002 | None:intergenic | 20.0% |
| !! | AGATACATTCATATAAAAGT+GGG | + | chr8_1:3803094-3803113 | None:intergenic | 20.0% |
| !! | TAGATACATTCATATAAAAG+TGG | + | chr8_1:3803095-3803114 | None:intergenic | 20.0% |
| !!! | ATGAATTTATTTTTGTTGGT+AGG | - | chr8_1:3803245-3803264 | Msa1173400:intron | 20.0% |
| !!! | TTTCTCTGAATTGATTTTTT+TGG | - | chr8_1:3803444-3803463 | Msa1173400:CDS | 20.0% |
| !!! | TGTTCCTTTATTTTATTGTA+TGG | - | chr8_1:3803794-3803813 | Msa1173400:intron | 20.0% |
| !!! | GTTCCTTTATTTTATTGTAT+GGG | - | chr8_1:3803795-3803814 | Msa1173400:intron | 20.0% |
| !!! | TCTTCATTTTTGAAGTATTT+GGG | + | chr8_1:3804013-3804032 | None:intergenic | 20.0% |
| !!! | TTCTTCATTTTTGAAGTATT+TGG | + | chr8_1:3804014-3804033 | None:intergenic | 20.0% |
| !!! | AAAAATGAAGAAGTATCAAT+TGG | - | chr8_1:3804022-3804041 | Msa1173400:intron | 20.0% |
| !! | ATTTAAATTCCATTAACAAC+AGG | - | chr8_1:3804259-3804278 | Msa1173400:intron | 20.0% |
| !! | TTACAATTACAAGACTAAAT+TGG | - | chr8_1:3804298-3804317 | Msa1173400:intron | 20.0% |
| !!! | ATCATTTTTCCTGTTTTTTT+CGG | - | chr8_1:3804425-3804444 | Msa1173400:intron | 20.0% |
| ! | GTGGATAAAAAACAGAAAAT+TGG | + | chr8_1:3801904-3801923 | None:intergenic | 25.0% |
| ! | CATCAACATCATAATAACTT+CGG | - | chr8_1:3802009-3802028 | Msa1173400:three_prime_UTR | 25.0% |
| ! | AAAATGAGGTTGTAAATTGA+CGG | + | chr8_1:3802040-3802059 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGGTTAGAGTGAT+TGG | + | chr8_1:3802197-3802216 | None:intergenic | 25.0% |
| ! | AAAACAAAACCCAAATCAAA+GGG | + | chr8_1:3802403-3802422 | None:intergenic | 25.0% |
| ! | ATCAATCAAACACATTACAT+CGG | + | chr8_1:3802582-3802601 | None:intergenic | 25.0% |
| ! | TGTTTGATTGATATGCAAAT+GGG | - | chr8_1:3802590-3802609 | Msa1173400:CDS | 25.0% |
| !! | GTCAAAATTTGTGTTTTCTT+AGG | - | chr8_1:3802685-3802704 | Msa1173400:intron | 25.0% |
| !! | AATTTGTGTTTTCTTAGGTT+TGG | - | chr8_1:3802690-3802709 | Msa1173400:intron | 25.0% |
| !! | TTTTCTTAGGTTTGGATTTT+TGG | - | chr8_1:3802698-3802717 | Msa1173400:intron | 25.0% |
| !!! | GTTTTTTTTTGTTTGGCAAT+TGG | - | chr8_1:3802722-3802741 | Msa1173400:intron | 25.0% |
| ! | TGTTTGAATGACAAGAAAAT+GGG | - | chr8_1:3802755-3802774 | Msa1173400:intron | 25.0% |
| ! | GTTAAAAATTGGTGTATGTT+TGG | - | chr8_1:3802852-3802871 | Msa1173400:intron | 25.0% |
| !! | GAGAATTTGAATTTGTTTCT+AGG | - | chr8_1:3802946-3802965 | Msa1173400:intron | 25.0% |
| !!! | AATTTAAAGTTTTTGCCTCT+GGG | - | chr8_1:3802991-3803010 | Msa1173400:intron | 25.0% |
| !!! | GAATTTTGCTGTTTTTTTTG+CGG | - | chr8_1:3803338-3803357 | Msa1173400:intron | 25.0% |
| !!! | AATTTTGCTGTTTTTTTTGC+GGG | - | chr8_1:3803339-3803358 | Msa1173400:intron | 25.0% |
| !!! | AATTTTGACACAAACCTATT+TGG | + | chr8_1:3803396-3803415 | None:intergenic | 25.0% |
| ! | TGCAAACGAGTTATATATTA+TGG | - | chr8_1:3803548-3803567 | Msa1173400:intron | 25.0% |
| ! | TGAAAATGAAACACTTTGTT+TGG | + | chr8_1:3803716-3803735 | None:intergenic | 25.0% |
| ! | GTTCCCATACAATAAAATAA+AGG | + | chr8_1:3803801-3803820 | None:intergenic | 25.0% |
| !! | ATTTGTCCTAATAACACTTT+TGG | - | chr8_1:3803917-3803936 | Msa1173400:intron | 25.0% |
| ! | GAAAGAACTAAATGTATGTT+TGG | - | chr8_1:3803959-3803978 | Msa1173400:intron | 25.0% |
| ! | CAATTAAATCCTGTTGTTAA+TGG | + | chr8_1:3804271-3804290 | None:intergenic | 25.0% |
| !!! | TTTTGTGTTGATGTTAAACA+GGG | - | chr8_1:3804363-3804382 | Msa1173400:intron | 25.0% |
| !!! | TCATTTTTCCTGTTTTTTTC+GGG | - | chr8_1:3804426-3804445 | Msa1173400:intron | 25.0% |
| ! | TATATATTTGACTCTTTAGC+TGG | - | chr8_1:3804609-3804628 | Msa1173400:CDS | 25.0% |
| ! | ATAGCTAAAAATAGTGTCAA+TGG | - | chr8_1:3804660-3804679 | Msa1173400:CDS | 25.0% |
| ! | AAAAAGGATAATAGAGAAGT+AGG | - | chr8_1:3804750-3804769 | Msa1173400:CDS | 25.0% |
| ! | TGTGGTTTGAATATATTTCT+AGG | + | chr8_1:3805091-3805110 | None:intergenic | 25.0% |
| !!! | CTGTTCATTGTTTTGGAAAA+GGG | + | chr8_1:3801972-3801991 | None:intergenic | 30.0% |
| !!! | ACTGTTCATTGTTTTGGAAA+AGG | + | chr8_1:3801973-3801992 | None:intergenic | 30.0% |
| ! | ACTACTACTGTTCATTGTTT+TGG | + | chr8_1:3801979-3801998 | None:intergenic | 30.0% |
| TATAGAATTCGGAGAAAATG+AGG | + | chr8_1:3802054-3802073 | None:intergenic | 30.0% | |
| !! | TTAGAGTGATTGGTTTGATT+GGG | + | chr8_1:3802187-3802206 | None:intergenic | 30.0% |
| CAAAGAGAAGAAGAATTCTT+CGG | + | chr8_1:3802226-3802245 | None:intergenic | 30.0% | |
| GAAAACAAAACCCAAATCAA+AGG | + | chr8_1:3802404-3802423 | None:intergenic | 30.0% | |
| AAGTGACAACAAAACACAAT+TGG | + | chr8_1:3802519-3802538 | None:intergenic | 30.0% | |
| GTGTTTGATTGATATGCAAA+TGG | - | chr8_1:3802589-3802608 | Msa1173400:CDS | 30.0% | |
| !! | TTTTGTTTGGCAATTGGAAA+TGG | - | chr8_1:3802728-3802747 | Msa1173400:intron | 30.0% |
| GTGTTTGAATGACAAGAAAA+TGG | - | chr8_1:3802754-3802773 | Msa1173400:intron | 30.0% | |
| !! | GAATTTAAAGTTTTTGCCTC+TGG | - | chr8_1:3802990-3803009 | Msa1173400:intron | 30.0% |
| ! | TGGGTTGAACAATAAACTAA+AGG | + | chr8_1:3803075-3803094 | None:intergenic | 30.0% |
| !! | TATGTGTTTTGTTGTGTTCA+AGG | - | chr8_1:3803113-3803132 | Msa1173400:intron | 30.0% |
| ACTTTAGTAACCTTACTCTT+AGG | - | chr8_1:3803280-3803299 | Msa1173400:intron | 30.0% | |
| !! | TGATGATTTGTTTGCATTGT+TGG | - | chr8_1:3803482-3803501 | Msa1173400:intron | 30.0% |
| ! | AATTTGTGTGTTTTGTGTGT+AGG | - | chr8_1:3803513-3803532 | Msa1173400:intron | 30.0% |
| CGAGTTATATATTATGGACA+TGG | - | chr8_1:3803554-3803573 | Msa1173400:intron | 30.0% | |
| TTATGGACATGGTTAATTGA+AGG | - | chr8_1:3803565-3803584 | Msa1173400:intron | 30.0% | |
| ! | TTTTCATGTTTACATGTCGT+GGG | - | chr8_1:3803614-3803633 | Msa1173400:intron | 30.0% |
| ATGAAAAGAATGAATCACCT+GGG | + | chr8_1:3803671-3803690 | None:intergenic | 30.0% | |
| AATGAAAAGAATGAATCACC+TGG | + | chr8_1:3803672-3803691 | None:intergenic | 30.0% | |
| !! | TAACCTCCAAAAGTGTTATT+AGG | + | chr8_1:3803926-3803945 | None:intergenic | 30.0% |
| !! | TACATTTAGTTCTTTCAGCT+TGG | + | chr8_1:3803955-3803974 | None:intergenic | 30.0% |
| !! | AAACATGCACTTAGTTCTTT+TGG | + | chr8_1:3804053-3804072 | None:intergenic | 30.0% |
| !!! | GTTTTGGAAGCTTACAAATA+AGG | - | chr8_1:3804101-3804120 | Msa1173400:intron | 30.0% |
| TTGAGGCTAAAAGTCAAATT+TGG | + | chr8_1:3804171-3804190 | None:intergenic | 30.0% | |
| !! | GTTTTGTGTTGATGTTAAAC+AGG | - | chr8_1:3804362-3804381 | Msa1173400:intron | 30.0% |
| ! | TGATGTTAAACAGGGATTTT+TGG | - | chr8_1:3804371-3804390 | Msa1173400:intron | 30.0% |
| ! | GATGTTAAACAGGGATTTTT+GGG | - | chr8_1:3804372-3804391 | Msa1173400:intron | 30.0% |
| AAAAATGATACATTCCCAAC+TGG | + | chr8_1:3804414-3804433 | None:intergenic | 30.0% | |
| TTAGAGCTACAACAAAATCA+CGG | + | chr8_1:3804823-3804842 | None:intergenic | 30.0% | |
| !! | TGTAGGTTTTGTCAAAATTG+CGG | - | chr8_1:3804845-3804864 | Msa1173400:CDS | 30.0% |
| TCATGTTTGGATTCTAACAT+CGG | + | chr8_1:3804889-3804908 | None:intergenic | 30.0% | |
| !!! | CATTGTTTTGGAAAAGGGTA+AGG | + | chr8_1:3801967-3801986 | None:intergenic | 35.0% |
| !! | GGAGGGGTATTTATAGAATT+CGG | + | chr8_1:3802065-3802084 | None:intergenic | 35.0% |
| !! | TAGAGTGATTGGTTTGATTG+GGG | + | chr8_1:3802186-3802205 | None:intergenic | 35.0% |
| !! | GTTAGAGTGATTGGTTTGAT+TGG | + | chr8_1:3802188-3802207 | None:intergenic | 35.0% |
| !!! | TCTTCGGCATTGGATTTTTT+TGG | + | chr8_1:3802210-3802229 | None:intergenic | 35.0% |
| ! | TTGTGGTCTTTTGTTCTTCA+TGG | - | chr8_1:3802336-3802355 | Msa1173400:CDS | 35.0% |
| ! | TGTTCTAGCTGCTCTTAATA+CGG | - | chr8_1:3802471-3802490 | Msa1173400:CDS | 35.0% |
| CTTAATACGGTATCTCTCTT+TGG | - | chr8_1:3802484-3802503 | Msa1173400:CDS | 35.0% | |
| ! | TTGGTGTATGTTTGGTTTCA+CGG | - | chr8_1:3802860-3802879 | Msa1173400:intron | 35.0% |
| ! | AAAACACCACAAAGCATCAA+GGG | + | chr8_1:3803310-3803329 | None:intergenic | 35.0% |
| ! | AAAAACACCACAAAGCATCA+AGG | + | chr8_1:3803311-3803330 | None:intergenic | 35.0% |
| ! | TTGATGCTTTGTGGTGTTTT+TGG | - | chr8_1:3803310-3803329 | Msa1173400:intron | 35.0% |
| !!! | CTTTGTGGTGTTTTTGGTTT+TGG | - | chr8_1:3803316-3803335 | Msa1173400:intron | 35.0% |
| !!! | CTGTTTTTTTTGCGGGAATT+GGG | - | chr8_1:3803346-3803365 | Msa1173400:intron | 35.0% |
| !!! | TGTTTTTTTTGCGGGAATTG+GGG | - | chr8_1:3803347-3803366 | Msa1173400:intron | 35.0% |
| ! | GGTTTGGTTGAAATCCAAAT+AGG | - | chr8_1:3803379-3803398 | Msa1173400:CDS | 35.0% |
| ! | GATTTGTTTGCATTGTTGGT+TGG | - | chr8_1:3803486-3803505 | Msa1173400:intron | 35.0% |
| ! | CTTTTCATGTTTACATGTCG+TGG | - | chr8_1:3803613-3803632 | Msa1173400:intron | 35.0% |
| TGAAAAGAATGAATCACCTG+GGG | + | chr8_1:3803670-3803689 | None:intergenic | 35.0% | |
| TATTAGGACAAATGCGATAG+CGG | + | chr8_1:3803910-3803929 | None:intergenic | 35.0% | |
| ! | TGTCCTAATAACACTTTTGG+AGG | - | chr8_1:3803920-3803939 | Msa1173400:intron | 35.0% |
| !! | TGCACTTAGTTCTTTTGGAT+TGG | + | chr8_1:3804048-3804067 | None:intergenic | 35.0% |
| ! | CTTTTTCTAACTTGAAGACG+AGG | - | chr8_1:3804130-3804149 | Msa1173400:intron | 35.0% |
| ! | AGGCCATTACACTATTGATT+TGG | - | chr8_1:3804566-3804585 | Msa1173400:CDS | 35.0% |
| CAGCCAAATCAATAGTGTAA+TGG | + | chr8_1:3804572-3804591 | None:intergenic | 35.0% | |
| !! | TACACTATTGATTTGGCTGT+TGG | - | chr8_1:3804573-3804592 | Msa1173400:CDS | 35.0% |
| !! | ACACTATTGATTTGGCTGTT+GGG | - | chr8_1:3804574-3804593 | Msa1173400:CDS | 35.0% |
| TGCAACCAAATCATGTTTAG+AGG | + | chr8_1:3804691-3804710 | None:intergenic | 35.0% | |
| ! | AATTTGAGACTGTACCCAAA+AGG | - | chr8_1:3804716-3804735 | Msa1173400:CDS | 35.0% |
| ! | ATTTGAGACTGTACCCAAAA+GGG | - | chr8_1:3804717-3804736 | Msa1173400:CDS | 35.0% |
| ! | TTTCTGTGTGTTTCCCTTTT+GGG | + | chr8_1:3804733-3804752 | None:intergenic | 35.0% |
| ! | TTTTCTGTGTGTTTCCCTTT+TGG | + | chr8_1:3804734-3804753 | None:intergenic | 35.0% |
| AAAGGGAAACACACAGAAAA+AGG | - | chr8_1:3804734-3804753 | Msa1173400:CDS | 35.0% | |
| !! | TTGTTGTAGCTCTAAAGTGT+AGG | - | chr8_1:3804828-3804847 | Msa1173400:CDS | 35.0% |
| GATGTTAGAATCCAAACATG+AGG | - | chr8_1:3804888-3804907 | Msa1173400:exon | 35.0% | |
| ! | GCTTTGTCTGCATTTCATTT+TGG | - | chr8_1:3805051-3805070 | Msa1173400:five_prime_UTR | 35.0% |
| !! | ATGGAATGAAGGCATTAGGA+GGG | + | chr8_1:3802082-3802101 | None:intergenic | 40.0% |
| !! | AATGGAATGAAGGCATTAGG+AGG | + | chr8_1:3802083-3802102 | None:intergenic | 40.0% |
| !! | TGGAATGGAATGAAGGCATT+AGG | + | chr8_1:3802086-3802105 | None:intergenic | 40.0% |
| GAGAATGTGGAATGGAATGA+AGG | + | chr8_1:3802093-3802112 | None:intergenic | 40.0% | |
| !! | AGAGTGATTGGTTTGATTGG+GGG | + | chr8_1:3802185-3802204 | None:intergenic | 40.0% |
| GAAGAAGAATTCTTCGGCAT+TGG | + | chr8_1:3802220-3802239 | None:intergenic | 40.0% | |
| CTTCAGCTTCGTTCATGAAA+TGG | - | chr8_1:3802257-3802276 | Msa1173400:three_prime_UTR | 40.0% | |
| AATCTCAGATGTTGTACACG+TGG | - | chr8_1:3802282-3802301 | Msa1173400:three_prime_UTR | 40.0% | |
| AGACCACAAGCAAACAAACA+CGG | + | chr8_1:3802325-3802344 | None:intergenic | 40.0% | |
| ! | TCTTTTGTTCTTCATGGCTG+TGG | - | chr8_1:3802342-3802361 | Msa1173400:CDS | 40.0% |
| TGTGGAATACACGCTCTTTA+TGG | - | chr8_1:3802360-3802379 | Msa1173400:CDS | 40.0% | |
| TTCTTCTCCACCCTTTGATT+TGG | - | chr8_1:3802390-3802409 | Msa1173400:CDS | 40.0% | |
| ! | TCTTCTCCACCCTTTGATTT+GGG | - | chr8_1:3802391-3802410 | Msa1173400:CDS | 40.0% |
| ACAAAACCCAAATCAAAGGG+TGG | + | chr8_1:3802400-3802419 | None:intergenic | 40.0% | |
| GCTAGAACATTATTGAGCTG+AGG | + | chr8_1:3802460-3802479 | None:intergenic | 40.0% | |
| CATGTTATCATCAATCCCAG+AGG | + | chr8_1:3803009-3803028 | None:intergenic | 40.0% | |
| !!! | GCTGTTTTTTTTGCGGGAAT+TGG | - | chr8_1:3803345-3803364 | Msa1173400:intron | 40.0% |
| TTTACATGTCGTGGGATTTG+TGG | - | chr8_1:3803622-3803641 | Msa1173400:intron | 40.0% | |
| TTACATGTCGTGGGATTTGT+GGG | - | chr8_1:3803623-3803642 | Msa1173400:intron | 40.0% | |
| ! | CTCAGAAGTGATGCTTGTTT+TGG | - | chr8_1:3804085-3804104 | Msa1173400:intron | 40.0% |
| TCTAACTTGAAGACGAGGTT+TGG | - | chr8_1:3804135-3804154 | Msa1173400:intron | 40.0% | |
| GCTTCGCAAATTAGTGTCTT+AGG | + | chr8_1:3804222-3804241 | None:intergenic | 40.0% | |
| !!! | AAACAGGGATTTTTGGGTTC+TGG | - | chr8_1:3804378-3804397 | Msa1173400:intron | 40.0% |
| TGATAGCTTCATTGGACATG+AGG | - | chr8_1:3804466-3804485 | Msa1173400:intron | 40.0% | |
| CCAAATCATGTTTAGAGGCA+TGG | + | chr8_1:3804686-3804705 | None:intergenic | 40.0% | |
| CCATGCCTCTAAACATGATT+TGG | - | chr8_1:3804683-3804702 | Msa1173400:CDS | 40.0% | |
| GTTAGAATCCAAACATGAGG+AGG | - | chr8_1:3804891-3804910 | Msa1173400:exon | 40.0% | |
| TTCAAACTCCTCCTCATGTT+TGG | + | chr8_1:3804902-3804921 | None:intergenic | 40.0% | |
| !! | TGGAATGAAGGCATTAGGAG+GGG | + | chr8_1:3802081-3802100 | None:intergenic | 45.0% |
| TTCATGGTGGTTGGAGAATG+TGG | + | chr8_1:3802106-3802125 | None:intergenic | 45.0% | |
| CATTCTCCAACCACCATGAA+CGG | - | chr8_1:3802106-3802125 | Msa1173400:three_prime_UTR | 45.0% | |
| TACACGTGGCAACACATCAT+TGG | - | chr8_1:3802296-3802315 | Msa1173400:exon | 45.0% | |
| ATGCCGTGTTTGTTTGCTTG+TGG | - | chr8_1:3802319-3802338 | Msa1173400:CDS | 45.0% | |
| TCAAAGGGTGGAGAAGAAGA+AGG | + | chr8_1:3802388-3802407 | None:intergenic | 45.0% | |
| ! | TTTTTGCGGGAATTGGGGAA+TGG | - | chr8_1:3803352-3803371 | Msa1173400:CDS | 45.0% |
| ! | ATTGGGGAATGGAATGGGTT+TGG | - | chr8_1:3803363-3803382 | Msa1173400:CDS | 45.0% |
| AGAGCTGAGATTGTTGCTCT+AGG | + | chr8_1:3803595-3803614 | None:intergenic | 45.0% | |
| CCACATGACCCGAAAAAAAC+AGG | + | chr8_1:3804437-3804456 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTTTTCGGGTCATG+TGG | - | chr8_1:3804434-3804453 | Msa1173400:intron | 45.0% |
| !!! | GTTTTTTTCGGGTCATGTGG+CGG | - | chr8_1:3804437-3804456 | Msa1173400:intron | 45.0% |
| !!! | TTTTTTTCGGGTCATGTGGC+GGG | - | chr8_1:3804438-3804457 | Msa1173400:intron | 45.0% |
| TAGCTTCATTGGACATGAGG+AGG | - | chr8_1:3804469-3804488 | Msa1173400:intron | 45.0% | |
| TGAATGTGTTGCAAGCTGTG+AGG | - | chr8_1:3804529-3804548 | Msa1173400:intron | 45.0% | |
| !! | ATTGATTTGGCTGTTGGGCT+AGG | - | chr8_1:3804579-3804598 | Msa1173400:CDS | 45.0% |
| GTAGGCAATGTGTGTATGTG+TGG | - | chr8_1:3804768-3804787 | Msa1173400:CDS | 45.0% | |
| ATGTGTGTATGTGTGGATGC+CGG | - | chr8_1:3804775-3804794 | Msa1173400:CDS | 45.0% | |
| CGACAAAATCATCTCCCATC+CGG | + | chr8_1:3804797-3804816 | None:intergenic | 45.0% | |
| GGTGGTTGGAGAATGTGGAA+TGG | + | chr8_1:3802101-3802120 | None:intergenic | 50.0% | |
| !! | GTGATTGGTTTGATTGGGGG+TGG | + | chr8_1:3802182-3802201 | None:intergenic | 50.0% |
| CAAGGGCTGACCTAAGAGTA+AGG | + | chr8_1:3803293-3803312 | None:intergenic | 50.0% | |
| CGGGAATTGGGGAATGGAAT+GGG | - | chr8_1:3803358-3803377 | Msa1173400:CDS | 50.0% | |
| GAATGAATCACCTGGGGCAA+TGG | + | chr8_1:3803664-3803683 | None:intergenic | 50.0% | |
| !!! | GGGATTTTTGGGTTCTGGTG+TGG | - | chr8_1:3804383-3804402 | Msa1173400:intron | 50.0% |
| TCTGGTGTGGACTTTCCAGT+TGG | - | chr8_1:3804396-3804415 | Msa1173400:intron | 50.0% | |
| CTGGTGTGGACTTTCCAGTT+GGG | - | chr8_1:3804397-3804416 | Msa1173400:intron | 50.0% | |
| !! | GGGTTCGGTGATAGCTTCAT+TGG | - | chr8_1:3804458-3804477 | Msa1173400:intron | 50.0% |
| TGGACATGAGGAGGATGAAG+AGG | - | chr8_1:3804478-3804497 | Msa1173400:intron | 50.0% | |
| ACATGAGGAGGATGAAGAGG+TGG | - | chr8_1:3804481-3804500 | Msa1173400:intron | 50.0% | |
| CATGAGGAGGATGAAGAGGT+GGG | - | chr8_1:3804482-3804501 | Msa1173400:intron | 50.0% | |
| TTGCAAGCTGTGAGGTTGCT+TGG | - | chr8_1:3804537-3804556 | Msa1173400:CDS | 50.0% | |
| GTGAGGTTGCTTGGTACAAG+AGG | - | chr8_1:3804546-3804565 | Msa1173400:CDS | 50.0% | |
| TGTATGTGTGGATGCCGGAT+GGG | - | chr8_1:3804780-3804799 | Msa1173400:CDS | 50.0% | |
| TCTCCAACCACCATGAACGG+CGG | - | chr8_1:3802109-3802128 | Msa1173400:three_prime_UTR | 55.0% | |
| GGTGTGTCTGCGTTTGAGGA+CGG | + | chr8_1:3802161-3802180 | None:intergenic | 55.0% | |
| GGTCAGCCCTTGATGCTTTG+TGG | - | chr8_1:3803301-3803320 | Msa1173400:intron | 55.0% | |
| GCGGGAATTGGGGAATGGAA+TGG | - | chr8_1:3803357-3803376 | Msa1173400:CDS | 55.0% | |
| GAGGATGAAGAGGTGGGAGT+TGG | - | chr8_1:3804488-3804507 | Msa1173400:intron | 55.0% | |
| TGAAGAGGTGGGAGTTGGCA+TGG | - | chr8_1:3804493-3804512 | Msa1173400:intron | 55.0% | |
| GTGTATGTGTGGATGCCGGA+TGG | - | chr8_1:3804779-3804798 | Msa1173400:CDS | 55.0% | |
| GGCGTCACCGGAAAAAGAGG+CGG | + | chr8_1:3802137-3802156 | None:intergenic | 60.0% | |
| GGTGGCGTCACCGGAAAAAG+AGG | + | chr8_1:3802140-3802159 | None:intergenic | 60.0% | |
| TTTGAGGACGGTGGCGTCAC+CGG | + | chr8_1:3802149-3802168 | None:intergenic | 60.0% | |
| GTGTCTGCGTTTGAGGACGG+TGG | + | chr8_1:3802158-3802177 | None:intergenic | 60.0% | |
| GGGTGGTGTGTCTGCGTTTG+AGG | + | chr8_1:3802165-3802184 | None:intergenic | 60.0% | |
| CACCTGGGGCAATGGTAGCT+GGG | + | chr8_1:3803656-3803675 | None:intergenic | 60.0% | |
| TCACCTGGGGCAATGGTAGC+TGG | + | chr8_1:3803657-3803676 | None:intergenic | 60.0% | |
| !! | TTCGGGTCATGTGGCGGGTT+CGG | - | chr8_1:3804443-3804462 | Msa1173400:intron | 60.0% |
| ! | TTGGCTGTTGGGCTAGGTGC+TGG | - | chr8_1:3804585-3804604 | Msa1173400:CDS | 60.0% |
| CTGGGGCAATGGTAGCTGGG+TGG | + | chr8_1:3803653-3803672 | None:intergenic | 65.0% | |
| CACCCAGCTACCATTGCCCC+AGG | - | chr8_1:3803651-3803670 | Msa1173400:intron | 65.0% | |
| GCGCCGCCGTTCATGGTGGT+TGG | + | chr8_1:3802115-3802134 | None:intergenic | 70.0% | |
| ! | GGCGGCGCCGCCTCTTTTTC+CGG | - | chr8_1:3802127-3802146 | Msa1173400:three_prime_UTR | 70.0% |
| AGAGGCGGCGCCGCCGTTCA+TGG | + | chr8_1:3802122-3802141 | None:intergenic | 75.0% | |
| ! | GGCGGCGCCGCCGTTCATGG+TGG | + | chr8_1:3802119-3802138 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 3801901 | 3805123 | 3801901 | ID=Msa1173400;Name=Msa1173400 |
| chr8_1 | mRNA | 3801901 | 3805123 | 3801901 | ID=Msa1173400-mRNA-1;Parent=Msa1173400;Name=Msa1173400-mRNA-1;_AED=0.30;_eAED=0.30;_QI=220|1|1|1|1|1|3|410|279 |
| chr8_1 | exon | 3801901 | 3802640 | 3801901 | ID=Msa1173400-mRNA-1:exon:1406;Parent=Msa1173400-mRNA-1 |
| chr8_1 | exon | 3803352 | 3803489 | 3803352 | ID=Msa1173400-mRNA-1:exon:1405;Parent=Msa1173400-mRNA-1 |
| chr8_1 | exon | 3804532 | 3805123 | 3804532 | ID=Msa1173400-mRNA-1:exon:1404;Parent=Msa1173400-mRNA-1 |
| chr8_1 | five_prime_UTR | 3804904 | 3805123 | 3804904 | ID=Msa1173400-mRNA-1:five_prime_utr;Parent=Msa1173400-mRNA-1 |
| chr8_1 | CDS | 3804532 | 3804903 | 3804532 | ID=Msa1173400-mRNA-1:cds;Parent=Msa1173400-mRNA-1 |
| chr8_1 | CDS | 3803352 | 3803489 | 3803352 | ID=Msa1173400-mRNA-1:cds;Parent=Msa1173400-mRNA-1 |
| chr8_1 | CDS | 3802311 | 3802640 | 3802311 | ID=Msa1173400-mRNA-1:cds;Parent=Msa1173400-mRNA-1 |
| chr8_1 | three_prime_UTR | 3801901 | 3802310 | 3801901 | ID=Msa1173400-mRNA-1:three_prime_utr;Parent=Msa1173400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
