AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0262480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262480 MtrunA17_Chr2g0325151 100.000 223 0 0 1 223 1 223 4.44e-168 461
Msa0262480 MtrunA17_Chr3g0128921 98.649 222 3 0 1 222 1 222 1.02e-165 456
Msa0262480 MtrunA17_Chr3g0108371 93.119 218 15 0 1 218 1 218 2.85e-152 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262480 AT1G26910.1 88.991 218 24 0 1 218 1 218 1.35e-146 407
Msa0262480 AT1G14320.1 88.532 218 25 0 1 218 1 218 2.16e-145 404
Msa0262480 AT1G66580.1 88.128 219 26 0 1 219 1 219 7.56e-145 403
Msa0262480 AT1G26910.2 87.845 181 22 0 38 218 1 181 9.68e-118 333
Msa0262480 AT1G14320.2 76.596 94 20 1 127 218 31 124 1.19e-45 148
Msa0262480 AT1G14320.2 97.436 39 1 0 38 76 1 39 1.96e-20 83.6

Find 88 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGACAGAATCGTGATTT+TGG 0.179385 2_2:+61413713 None:intergenic
ACGACTCAATTCTCACAAAA+TGG 0.201618 2_2:-61412458 Msa0262480:three_prime_UTR
AAATTATGGATATAGATTTA+TGG 0.263435 2_2:-61415648 Msa0262480:five_prime_UTR
GAAAATCTATATATATAGTT+AGG 0.269557 2_2:+61415588 None:intergenic
TTCTCACATCAAATACTAAA+AGG 0.270230 2_2:+61412560 None:intergenic
TATAGTTAGGGTTTAGGTTT+TGG 0.279092 2_2:+61415601 None:intergenic
TATATATATAGTTAGGGTTT+AGG 0.288574 2_2:+61415595 None:intergenic
AAACAACGTTCAAGAAATTA+TGG 0.291184 2_2:-61415662 Msa0262480:five_prime_UTR
ACATCGTAAATCCTGATCTT+AGG 0.319740 2_2:+61413680 None:intergenic
CGTGAGATTGCAAGTAGATT+TGG 0.321079 2_2:+61412478 None:intergenic
CTTTGACATGTACTTGTTGC+AGG 0.330350 2_2:+61413553 None:intergenic
TTGGTTAGATACTGGGCTTA+TGG 0.352344 2_2:+61415620 None:intergenic
GTTTCCTTTCTGTGTTCATC+TGG 0.355959 2_2:-61413630 Msa0262480:CDS
CTGTGTTCATCTGGTCAGTT+GGG 0.370061 2_2:-61413621 Msa0262480:CDS
ACTGGTATGAGAGGTGCTTT+TGG 0.372976 2_2:-61413428 Msa0262480:CDS
ATGCATTCCACTTGAGAGTC+AGG 0.376262 2_2:-61413517 Msa0262480:CDS
GTTTGTGCTAGAGTGGCTAT+TGG 0.382737 2_2:-61413392 Msa0262480:CDS
TTTCATGTGCTGGTGCTGAT+AGG 0.390293 2_2:-61413457 Msa0262480:CDS
TCTGTGTTCATCTGGTCAGT+TGG 0.393251 2_2:-61413622 Msa0262480:CDS
GGTTCAGTTTCTCTGAGAAT+TGG 0.395180 2_2:-61412436 Msa0262480:three_prime_UTR
CAAGGAACGCAGCGCAGCCA+TGG 0.401788 2_2:-61415518 Msa0262480:exon
ACCTTAGCATTCACCCCATC+GGG 0.415318 2_2:+61413066 None:intergenic
TTTGTGCTAGAGTGGCTATT+GGG 0.420431 2_2:-61413391 Msa0262480:CDS
TTGCAGCTTCTTGGATGCCA+TGG 0.430564 2_2:-61412819 Msa0262480:intron
CGACTCAATTCTCACAAAAT+GGG 0.447416 2_2:-61412457 Msa0262480:three_prime_UTR
TTAGATACTGGGCTTATGGA+TGG 0.448359 2_2:+61415624 None:intergenic
CGATGTTGGCATGAAGAAGA+AGG 0.456800 2_2:-61413663 Msa0262480:CDS
TGAGTATCTGAAGTTGAAAT+CGG 0.458837 2_2:-61413103 Msa0262480:CDS
CATGTCAAAGTTTGCAGGAA+AGG 0.460338 2_2:-61413540 Msa0262480:CDS
ATGGCTTGTTCTTAATTTGA+CGG 0.461186 2_2:+61413738 None:intergenic
TGCTAGAGTGGCTATTGGGC+AGG 0.472691 2_2:-61413387 Msa0262480:CDS
AAGTACATGTCAAAGTTTGC+AGG 0.473692 2_2:-61413545 Msa0262480:CDS
AAAATCTATATATATAGTTA+GGG 0.475543 2_2:+61415589 None:intergenic
GAACTCAACTTAACAAAGTA+CGG 0.482624 2_2:+61412656 None:intergenic
TCTTGGATGCCATGGACCAT+TGG 0.486612 2_2:-61412811 Msa0262480:CDS
CGTGCCAAGTTTAAGTTCCC+TGG 0.487787 2_2:-61413305 Msa0262480:CDS
TAAATCCTGATCTTAGGATC+AGG 0.495721 2_2:+61413686 None:intergenic
TACCTTAGCATTCACCCCAT+CGG 0.499742 2_2:+61413065 None:intergenic
TGCCAGCTGTAATGAGGCTT+AGG 0.501937 2_2:-61412757 Msa0262480:exon
TTTGAATGCCAGCTGTAATG+AGG 0.503491 2_2:-61412763 Msa0262480:CDS
AAGGAACGCAGCGCAGCCAT+GGG 0.507562 2_2:-61415517 Msa0262480:exon
TTAGGTCTTACTTCTTCCCA+TGG 0.509780 2_2:+61415501 None:intergenic
TAACATAAATCATAAATTCA+AGG 0.511918 2_2:+61412609 None:intergenic
TCTTGTTGATCCTGAGTACA+TGG 0.512666 2_2:+61413483 None:intergenic
AACAAGATGCTTTCATGTGC+TGG 0.512686 2_2:-61413467 Msa0262480:CDS
CCATTGGCTAACCGTCAACC+TGG 0.512794 2_2:-61412795 Msa0262480:CDS
CAACAACAGCCACCATGCTC+AGG 0.521206 2_2:-61413339 Msa0262480:CDS
TCAAAGAGACCAAATCTCAA+TGG 0.524148 2_2:+61412527 None:intergenic
GCTCCTTTCTGTCCGTTGCA+AGG 0.530827 2_2:-61413363 Msa0262480:CDS
ACGGCCAGGGAACTTAAACT+TGG 0.532430 2_2:+61413301 None:intergenic
AGATCATCGTTAGCAGGAAG+TGG 0.534059 2_2:-61413274 Msa0262480:intron
AGCCTAAGCCTCATTACAGC+TGG 0.535691 2_2:+61412755 None:intergenic
GTCAAAAGATCATCGTTAGC+AGG 0.537568 2_2:-61413280 Msa0262480:CDS
TGTCCTTGCAACGGACAGAA+AGG 0.541207 2_2:+61413360 None:intergenic
GAGTTCCTGATCCTAAGATC+AGG 0.544600 2_2:-61413691 Msa0262480:CDS
CCAGGTTGACGGTTAGCCAA+TGG 0.544617 2_2:+61412795 None:intergenic
TCAGGGTGTTTGTGCTAGAG+TGG 0.548804 2_2:-61413399 Msa0262480:CDS
AAAACAGAATTATGCCCGAT+GGG 0.552482 2_2:-61413080 Msa0262480:CDS
GACGGAGAGCCTCCTGAGCA+TGG 0.554611 2_2:+61413327 None:intergenic
AAGATCAGGATTTACGATGT+TGG 0.557539 2_2:-61413677 Msa0262480:CDS
CAAGATTGATTTGATTTGTG+CGG 0.558004 2_2:+61415561 None:intergenic
GACGGTTAGCCAATGGTCCA+TGG 0.564761 2_2:+61412802 None:intergenic
GGCTGTTGTTGTCCTTGCAA+CGG 0.568368 2_2:+61413351 None:intergenic
GGTGCTGATAGGCTTCAAAC+TGG 0.570540 2_2:-61413446 Msa0262480:CDS
TCATCTGGTCAGTTGGGAGA+AGG 0.572889 2_2:-61413615 Msa0262480:CDS
CTGACCAGATGAACACAGAA+AGG 0.573863 2_2:+61413626 None:intergenic
AGGAGACAGCACAGGACGCA+AGG 0.573942 2_2:-61415536 Msa0262480:five_prime_UTR
ATTTGACGGTAACACCTAGC+AGG 0.579048 2_2:+61413752 None:intergenic
TAGATACTGGGCTTATGGAT+GGG 0.579484 2_2:+61415625 None:intergenic
TCAACTTCAGATACTCAGCT+CGG 0.581935 2_2:+61413109 None:intergenic
GCCCGATGGGGTGAATGCTA+AGG 0.582072 2_2:-61413067 Msa0262480:intron
TTCATCCATTCCATGTACTC+AGG 0.583517 2_2:-61413493 Msa0262480:CDS
TGCATTCCACTTGAGAGTCA+GGG 0.588140 2_2:-61413516 Msa0262480:CDS
CAACAGCCACCATGCTCAGG+AGG 0.593303 2_2:-61413336 Msa0262480:CDS
GTGAGGCACTTGAAGCTGCT+AGG 0.594487 2_2:-61413580 Msa0262480:CDS
CAAATCAAATCAATCTTGCA+AGG 0.595587 2_2:-61415556 Msa0262480:five_prime_UTR
GATGAACCCTGACTCTCAAG+TGG 0.599276 2_2:+61413510 None:intergenic
AGGCTTCAAACTGGTATGAG+AGG 0.600097 2_2:-61413437 Msa0262480:CDS
CCAAAATCACGATTCTGTCG+TGG 0.626637 2_2:-61413713 Msa0262480:CDS
GAAAACAGAATTATGCCCGA+TGG 0.626773 2_2:-61413081 Msa0262480:CDS
TTGATCCTGAGTACATGGAA+TGG 0.632244 2_2:+61413488 None:intergenic
GATGTTGGCATGAAGAAGAA+GGG 0.638141 2_2:-61413662 Msa0262480:CDS
GGAACTTAAACTTGGCACGA+CGG 0.658128 2_2:+61413309 None:intergenic
GAAGGAAAATGTCTCAAGTG+AGG 0.670840 2_2:-61413597 Msa0262480:CDS
ATCTTGCAAGGAGACAGCAC+AGG 0.680122 2_2:-61415544 Msa0262480:five_prime_UTR
AAACAGAATTATGCCCGATG+GGG 0.689778 2_2:-61413079 Msa0262480:CDS
GGAGAGCCTCCTGAGCATGG+TGG 0.689789 2_2:+61413330 None:intergenic
ACTCTAGCACAAACACCCTG+AGG 0.744760 2_2:+61413401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCTATATATATAGTTA+GGG + chr2_2:61412441-61412460 None:intergenic 10.0%
!! TGTAACAAATAATATATTAA+GGG + chr2_2:61413005-61413024 None:intergenic 10.0%
!!! ATTTATGTTATATTTTGTTA+TGG - chr2_2:61415431-61415450 Msa0262480:intron 10.0%
!! AAATTATGGATATAGATTTA+TGG - chr2_2:61412379-61412398 Msa0262480:three_prime_UTR 15.0%
!! GAAAATCTATATATATAGTT+AGG + chr2_2:61412442-61412461 None:intergenic 15.0%
!!! TGATTTGTGATTTAAAATTT+AGG - chr2_2:61412756-61412775 Msa0262480:exon 15.0%
!!! GATTTGTGATTTAAAATTTA+GGG - chr2_2:61412757-61412776 Msa0262480:exon 15.0%
!! TTAAATTAATTGAGAATTTG+AGG - chr2_2:61412877-61412896 Msa0262480:intron 15.0%
!! CTGTAACAAATAATATATTA+AGG + chr2_2:61413006-61413025 None:intergenic 15.0%
!! TTACATTCAAAATATAAACA+GGG + chr2_2:61413670-61413689 None:intergenic 15.0%
!! TTTCATAAAAATTAGTACTT+GGG + chr2_2:61413926-61413945 None:intergenic 15.0%
!! ATTTCATAAAAATTAGTACT+TGG + chr2_2:61413927-61413946 None:intergenic 15.0%
!!! ATCATGTTTGTTTTATTTAT+AGG - chr2_2:61414251-61414270 Msa0262480:intron 15.0%
!!! TCATGTTTGTTTTATTTATA+GGG - chr2_2:61414252-61414271 Msa0262480:intron 15.0%
!! TAACATAAATCATAAATTCA+AGG + chr2_2:61415421-61415440 None:intergenic 15.0%
!! CAATTAAAAAAAAATCTAGT+TGG + chr2_2:61415667-61415686 None:intergenic 15.0%
!!! CTAGATTTTTTTTTAATTGT+TGG - chr2_2:61415668-61415687 Msa0262480:five_prime_UTR 15.0%
!! TATATATATAGTTAGGGTTT+AGG + chr2_2:61412435-61412454 None:intergenic 20.0%
!! GAAATGAATGAAAATTAGAA+GGG + chr2_2:61412554-61412573 None:intergenic 20.0%
!! AGAAATGAATGAAAATTAGA+AGG + chr2_2:61412555-61412574 None:intergenic 20.0%
!! ATTGAAATAAAACGAATTCA+TGG + chr2_2:61412627-61412646 None:intergenic 20.0%
!!! AGATATGATGATGTTTATAT+TGG - chr2_2:61412655-61412674 Msa0262480:three_prime_UTR 20.0%
!! AAAGGTTTACTAAAACATAA+AGG + chr2_2:61413165-61413184 None:intergenic 20.0%
!!! ACCTTTTTGATTTTTTATTG+CGG - chr2_2:61413179-61413198 Msa0262480:intron 20.0%
!! AATGATGATATTTATCCATA+CGG - chr2_2:61413361-61413380 Msa0262480:CDS 20.0%
!! GTTACATTCAAAATATAAAC+AGG + chr2_2:61413671-61413690 None:intergenic 20.0%
!! CTATAATTAGAATTAGTACT+TGG + chr2_2:61413693-61413712 None:intergenic 20.0%
!!! TGAATGTCATGATATTTTAA+TGG - chr2_2:61414159-61414178 Msa0262480:intron 20.0%
!! CAATAATTAGAGTTAATACA+TGG + chr2_2:61414859-61414878 None:intergenic 20.0%
!!! CTAATTATTGTTGTTTGTAA+TGG - chr2_2:61414869-61414888 Msa0262480:intron 20.0%
!!! ATGTTAGTTTGGAATATATT+AGG - chr2_2:61415074-61415093 Msa0262480:intron 20.0%
!!! TGTTAGTTTGGAATATATTA+GGG - chr2_2:61415075-61415094 Msa0262480:intron 20.0%
!!! AAAAGAACTTATAAGTTGAA+AGG + chr2_2:61415182-61415201 None:intergenic 20.0%
!! TATTTGATGTGAGAAAAAAA+AGG - chr2_2:61415475-61415494 Msa0262480:intron 20.0%
! AAACAACGTTCAAGAAATTA+TGG - chr2_2:61412365-61412384 Msa0262480:three_prime_UTR 25.0%
! ATGAAAATTAGAAGGGAATT+AGG + chr2_2:61412547-61412566 None:intergenic 25.0%
! AAATGAAATGAAGAAACAAC+TGG + chr2_2:61412604-61412623 None:intergenic 25.0%
! AAAAATAAGCTAATCCAAAC+GGG + chr2_2:61412940-61412959 None:intergenic 25.0%
! CAAAAATAAGCTAATCCAAA+CGG + chr2_2:61412941-61412960 None:intergenic 25.0%
! ATGATTATCCTATTATTGTG+TGG - chr2_2:61413057-61413076 Msa0262480:intron 25.0%
! GAACTAACAAACAATTACAA+TGG + chr2_2:61413083-61413102 None:intergenic 25.0%
!!! TGTTTGTTATTGATGAATTC+AGG - chr2_2:61413120-61413139 Msa0262480:CDS 25.0%
! ACCGCAATAAAAAATCAAAA+AGG + chr2_2:61413183-61413202 None:intergenic 25.0%
! TCCATTATGTATTATGTGTT+GGG + chr2_2:61413279-61413298 None:intergenic 25.0%
! ACAGTATAATCAGAATAGTA+AGG + chr2_2:61413791-61413810 None:intergenic 25.0%
!! GTGATATTTCTGAATAATCA+CGG + chr2_2:61414042-61414061 None:intergenic 25.0%
! TAACTTGAATCATGTTAGTT+TGG - chr2_2:61415063-61415082 Msa0262480:intron 25.0%
!! TTTTTGCAAGAATGAATATG+AGG - chr2_2:61415336-61415355 Msa0262480:intron 25.0%
! TTCTCACATCAAATACTAAA+AGG + chr2_2:61415470-61415489 None:intergenic 25.0%
!!! TTAGGTTTTGGTTAGATACT+GGG + chr2_2:61412417-61412436 None:intergenic 30.0%
!!! TTTAGGTTTTGGTTAGATAC+TGG + chr2_2:61412418-61412437 None:intergenic 30.0%
!! TATAGTTAGGGTTTAGGTTT+TGG + chr2_2:61412429-61412448 None:intergenic 30.0%
!! CAAGATTGATTTGATTTGTG+CGG + chr2_2:61412469-61412488 None:intergenic 30.0%
CAAATCAAATCAATCTTGCA+AGG - chr2_2:61412471-61412490 Msa0262480:three_prime_UTR 30.0%
TAATATATTAAGGGTCTGTC+TGG + chr2_2:61412996-61413015 None:intergenic 30.0%
!!! TTGATTTTTTATTGCGGTAG+TGG - chr2_2:61413185-61413204 Msa0262480:intron 30.0%
TAGTAAGATCAAATTGAGCA+TGG + chr2_2:61413251-61413270 None:intergenic 30.0%
TCCCAACACATAATACATAA+TGG - chr2_2:61413275-61413294 Msa0262480:CDS 30.0%
CTCCATTATGTATTATGTGT+TGG + chr2_2:61413280-61413299 None:intergenic 30.0%
! CTATCATTCTTTGTTGTCTT+TGG - chr2_2:61413313-61413332 Msa0262480:CDS 30.0%
! TAGCTTGACATTTCGTTTTA+CGG - chr2_2:61413572-61413591 Msa0262480:CDS 30.0%
AACAGGGAATTAGTAACAAT+AGG + chr2_2:61413654-61413673 None:intergenic 30.0%
TTAGTACTTGGGTATATCTA+TGG + chr2_2:61413915-61413934 None:intergenic 30.0%
ACGGTATAATCAGAATAGTA+AGG + chr2_2:61414023-61414042 None:intergenic 30.0%
TCAGAAATATCACCATCTTT+CGG - chr2_2:61414049-61414068 Msa0262480:intron 30.0%
!! ATGGCTTGTTCTTAATTTGA+CGG + chr2_2:61414292-61414311 None:intergenic 30.0%
ACAAATCTACAATCGAAGTA+AGG + chr2_2:61414804-61414823 None:intergenic 30.0%
TTGTTTGTAATGGTTCTTCA+GGG - chr2_2:61414879-61414898 Msa0262480:intron 30.0%
! TGAGTATCTGAAGTTGAAAT+CGG - chr2_2:61414924-61414943 Msa0262480:intron 30.0%
! ATATTTTCTTCCTCATGCTA+AGG - chr2_2:61415025-61415044 Msa0262480:intron 30.0%
AATCTGTTTGAACACTCAAA+TGG - chr2_2:61415120-61415139 Msa0262480:intron 30.0%
GAACTCAACTTAACAAAGTA+CGG + chr2_2:61415374-61415393 None:intergenic 30.0%
AAAAAGGTTCCATTGAGATT+TGG - chr2_2:61415491-61415510 Msa0262480:intron 30.0%
AGAGAGATCAGAAATTGGAA+GGG + chr2_2:61412712-61412731 None:intergenic 35.0%
AAGAGAGATCAGAAATTGGA+AGG + chr2_2:61412713-61412732 None:intergenic 35.0%
CTGAAAGAGAGATCAGAAAT+TGG + chr2_2:61412717-61412736 None:intergenic 35.0%
TACAATGGCCACACAATAAT+AGG + chr2_2:61413068-61413087 None:intergenic 35.0%
!!! TGTTCGTCAACTTTTTTACC+AGG - chr2_2:61413216-61413235 Msa0262480:intron 35.0%
TCATCAAAAACAGAACCGTA+TGG + chr2_2:61413379-61413398 None:intergenic 35.0%
TTCTAGACATCAGATACCAT+AGG + chr2_2:61413535-61413554 None:intergenic 35.0%
! AGCTTGACATTTCGTTTTAC+GGG - chr2_2:61413573-61413592 Msa0262480:CDS 35.0%
! GGGATAGATCAAACTTTTAC+AGG - chr2_2:61413594-61413613 Msa0262480:CDS 35.0%
TCCAAAACATCACCATCTTT+CGG - chr2_2:61413817-61413836 Msa0262480:intron 35.0%
!! TTTTATTTATAGGGCCTGCT+AGG - chr2_2:61414261-61414280 Msa0262480:intron 35.0%
! CAGAATCGTGATTTTGGATA+TGG + chr2_2:61414311-61414330 None:intergenic 35.0%
TAAATCCTGATCTTAGGATC+AGG + chr2_2:61414344-61414363 None:intergenic 35.0%
ACATCGTAAATCCTGATCTT+AGG + chr2_2:61414350-61414369 None:intergenic 35.0%
AAGATCAGGATTTACGATGT+TGG - chr2_2:61414350-61414369 Msa0262480:intron 35.0%
AAGTACATGTCAAAGTTTGC+AGG - chr2_2:61414482-61414501 Msa0262480:intron 35.0%
! TGCTAACGATGATCTTTTGA+CGG + chr2_2:61414748-61414767 None:intergenic 35.0%
TCGATTGTAGATTTGTAGTC+TGG - chr2_2:61414808-61414827 Msa0262480:intron 35.0%
CGATTGTAGATTTGTAGTCT+GGG - chr2_2:61414809-61414828 Msa0262480:intron 35.0%
GTTGTTTGTAATGGTTCTTC+AGG - chr2_2:61414878-61414897 Msa0262480:intron 35.0%
TGTTTGTAATGGTTCTTCAG+GGG - chr2_2:61414880-61414899 Msa0262480:intron 35.0%
AAAACAGAATTATGCCCGAT+GGG - chr2_2:61414947-61414966 Msa0262480:intron 35.0%
! TTTGTGATTTTGCAGCTTCT+TGG - chr2_2:61415199-61415218 Msa0262480:intron 35.0%
TCAAAGAGACCAAATCTCAA+TGG + chr2_2:61415503-61415522 None:intergenic 35.0%
ACGACTCAATTCTCACAAAA+TGG - chr2_2:61415569-61415588 Msa0262480:five_prime_UTR 35.0%
CGACTCAATTCTCACAAAAT+GGG - chr2_2:61415570-61415589 Msa0262480:five_prime_UTR 35.0%
TAGATACTGGGCTTATGGAT+GGG + chr2_2:61412405-61412424 None:intergenic 40.0%
TTAGATACTGGGCTTATGGA+TGG + chr2_2:61412406-61412425 None:intergenic 40.0%
TTGGTTAGATACTGGGCTTA+TGG + chr2_2:61412410-61412429 None:intergenic 40.0%
TTAGGTCTTACTTCTTCCCA+TGG + chr2_2:61412529-61412548 None:intergenic 40.0%
GTCACGGTGAATAAGAAACA+CGG + chr2_2:61412682-61412701 None:intergenic 40.0%
GAGAGATCAGAAATTGGAAG+GGG + chr2_2:61412711-61412730 None:intergenic 40.0%
! TTTTGAATCAAGTGCCCGTT+TGG - chr2_2:61412923-61412942 Msa0262480:intron 40.0%
TATTAAGGGTCTGTCTGGAT+TGG + chr2_2:61412991-61413010 None:intergenic 40.0%
! ATAGCTTGCAAGAGATCAGA+TGG + chr2_2:61413420-61413439 None:intergenic 40.0%
TGCGTCATGTATATTGCCTA+TGG - chr2_2:61413516-61413535 Msa0262480:CDS 40.0%
! GCTTGACATTTCGTTTTACG+GGG - chr2_2:61413574-61413593 Msa0262480:CDS 40.0%
GATGTTGGCATGAAGAAGAA+GGG - chr2_2:61414365-61414384 Msa0262480:intron 40.0%
GTTTCCTTTCTGTGTTCATC+TGG - chr2_2:61414397-61414416 Msa0262480:intron 40.0%
GAAGGAAAATGTCTCAAGTG+AGG - chr2_2:61414430-61414449 Msa0262480:intron 40.0%
! CTTTGACATGTACTTGTTGC+AGG + chr2_2:61414477-61414496 None:intergenic 40.0%
CATGTCAAAGTTTGCAGGAA+AGG - chr2_2:61414487-61414506 Msa0262480:intron 40.0%
TTCATCCATTCCATGTACTC+AGG - chr2_2:61414534-61414553 Msa0262480:intron 40.0%
TTGATCCTGAGTACATGGAA+TGG + chr2_2:61414542-61414561 None:intergenic 40.0%
TCTTGTTGATCCTGAGTACA+TGG + chr2_2:61414547-61414566 None:intergenic 40.0%
AACAAGATGCTTTCATGTGC+TGG - chr2_2:61414560-61414579 Msa0262480:intron 40.0%
TTTGTGCTAGAGTGGCTATT+GGG - chr2_2:61414636-61414655 Msa0262480:intron 40.0%
GTCAAAAGATCATCGTTAGC+AGG - chr2_2:61414747-61414766 Msa0262480:intron 40.0%
! TTTGTAGTCTGGGATTACTC+TGG - chr2_2:61414819-61414838 Msa0262480:intron 40.0%
TCAACTTCAGATACTCAGCT+CGG + chr2_2:61414921-61414940 None:intergenic 40.0%
GAAAACAGAATTATGCCCGA+TGG - chr2_2:61414946-61414965 Msa0262480:intron 40.0%
AAACAGAATTATGCCCGATG+GGG - chr2_2:61414948-61414967 Msa0262480:intron 40.0%
AAGTACATGTCCTTAGCATG+AGG + chr2_2:61415038-61415057 None:intergenic 40.0%
! AAAAAGCTCTTCCAGGTTGA+CGG + chr2_2:61415246-61415265 None:intergenic 40.0%
GCATTCAAAAAAGCTCTTCC+AGG + chr2_2:61415253-61415272 None:intergenic 40.0%
TTTGAATGCCAGCTGTAATG+AGG - chr2_2:61415264-61415283 Msa0262480:intron 40.0%
CGTGAGATTGCAAGTAGATT+TGG + chr2_2:61415552-61415571 None:intergenic 40.0%
! GGTTCAGTTTCTCTGAGAAT+TGG - chr2_2:61415591-61415610 Msa0262480:five_prime_UTR 40.0%
! TTTTACAGGTCTTGCGACAC+AGG - chr2_2:61413608-61413627 Msa0262480:CDS 45.0%
!! GCCGAAAGATGGTGATGTTT+TGG + chr2_2:61413821-61413840 None:intergenic 45.0%
ATGCAATCTCAGCCGAAAGA+TGG + chr2_2:61414064-61414083 None:intergenic 45.0%
ATTTGACGGTAACACCTAGC+AGG + chr2_2:61414278-61414297 None:intergenic 45.0%
! CCACGACAGAATCGTGATTT+TGG + chr2_2:61414317-61414336 None:intergenic 45.0%
CCAAAATCACGATTCTGTCG+TGG - chr2_2:61414314-61414333 Msa0262480:intron 45.0%
GAGTTCCTGATCCTAAGATC+AGG - chr2_2:61414336-61414355 Msa0262480:intron 45.0%
CGATGTTGGCATGAAGAAGA+AGG - chr2_2:61414364-61414383 Msa0262480:intron 45.0%
CTGACCAGATGAACACAGAA+AGG + chr2_2:61414404-61414423 None:intergenic 45.0%
TCTGTGTTCATCTGGTCAGT+TGG - chr2_2:61414405-61414424 Msa0262480:intron 45.0%
CTGTGTTCATCTGGTCAGTT+GGG - chr2_2:61414406-61414425 Msa0262480:intron 45.0%
ATGCATTCCACTTGAGAGTC+AGG - chr2_2:61414510-61414529 Msa0262480:intron 45.0%
TGCATTCCACTTGAGAGTCA+GGG - chr2_2:61414511-61414530 Msa0262480:intron 45.0%
!! TTTCATGTGCTGGTGCTGAT+AGG - chr2_2:61414570-61414589 Msa0262480:intron 45.0%
AGGCTTCAAACTGGTATGAG+AGG - chr2_2:61414590-61414609 Msa0262480:intron 45.0%
!!! ACTGGTATGAGAGGTGCTTT+TGG - chr2_2:61414599-61414618 Msa0262480:intron 45.0%
GTTTGTGCTAGAGTGGCTAT+TGG - chr2_2:61414635-61414654 Msa0262480:intron 45.0%
GGAACTTAAACTTGGCACGA+CGG + chr2_2:61414721-61414740 None:intergenic 45.0%
AGATCATCGTTAGCAGGAAG+TGG - chr2_2:61414753-61414772 Msa0262480:intron 45.0%
TACCTTAGCATTCACCCCAT+CGG + chr2_2:61414965-61414984 None:intergenic 45.0%
ATCTTGCAAGGAGACAGCAC+AGG - chr2_2:61412483-61412502 Msa0262480:three_prime_UTR 50.0%
TTGGAAGGGGTTGTCTGTCA+CGG + chr2_2:61412698-61412717 None:intergenic 50.0%
CTGCAATCTCAGCCGAAAGA+TGG + chr2_2:61413832-61413851 None:intergenic 50.0%
TCATCTGGTCAGTTGGGAGA+AGG - chr2_2:61414412-61414431 Msa0262480:intron 50.0%
GATGAACCCTGACTCTCAAG+TGG + chr2_2:61414520-61414539 None:intergenic 50.0%
!! GGTGCTGATAGGCTTCAAAC+TGG - chr2_2:61414581-61414600 Msa0262480:intron 50.0%
! AGGTGCTTTTGGTAAGCCTC+AGG - chr2_2:61414610-61414629 Msa0262480:intron 50.0%
! GGTGCTTTTGGTAAGCCTCA+GGG - chr2_2:61414611-61414630 Msa0262480:intron 50.0%
ACTCTAGCACAAACACCCTG+AGG + chr2_2:61414629-61414648 None:intergenic 50.0%
! TCAGGGTGTTTGTGCTAGAG+TGG - chr2_2:61414628-61414647 Msa0262480:intron 50.0%
TGTCCTTGCAACGGACAGAA+AGG + chr2_2:61414670-61414689 None:intergenic 50.0%
GGCTGTTGTTGTCCTTGCAA+CGG + chr2_2:61414679-61414698 None:intergenic 50.0%
! CGTGCCAAGTTTAAGTTCCC+TGG - chr2_2:61414722-61414741 Msa0262480:intron 50.0%
ACGGCCAGGGAACTTAAACT+TGG + chr2_2:61414729-61414748 None:intergenic 50.0%
! CGATGATCTTTTGACGGCCA+GGG + chr2_2:61414742-61414761 None:intergenic 50.0%
! ACGATGATCTTTTGACGGCC+AGG + chr2_2:61414743-61414762 None:intergenic 50.0%
ACCTTAGCATTCACCCCATC+GGG + chr2_2:61414964-61414983 None:intergenic 50.0%
TTGCAGCTTCTTGGATGCCA+TGG - chr2_2:61415208-61415227 Msa0262480:intron 50.0%
TCTTGGATGCCATGGACCAT+TGG - chr2_2:61415216-61415235 Msa0262480:intron 50.0%
TGCCAGCTGTAATGAGGCTT+AGG - chr2_2:61415270-61415289 Msa0262480:intron 50.0%
AGCCTAAGCCTCATTACAGC+TGG + chr2_2:61415275-61415294 None:intergenic 50.0%
TGAGCATGGCAAACAGTGCC+TGG + chr2_2:61413237-61413256 None:intergenic 55.0%
! GTGAGGCACTTGAAGCTGCT+AGG - chr2_2:61414447-61414466 Msa0262480:intron 55.0%
TGCTAGAGTGGCTATTGGGC+AGG - chr2_2:61414640-61414659 Msa0262480:intron 55.0%
GCTCCTTTCTGTCCGTTGCA+AGG - chr2_2:61414664-61414683 Msa0262480:intron 55.0%
CAACAACAGCCACCATGCTC+AGG - chr2_2:61414688-61414707 Msa0262480:intron 55.0%
! GACGGTTAGCCAATGGTCCA+TGG + chr2_2:61415228-61415247 None:intergenic 55.0%
! CCAGGTTGACGGTTAGCCAA+TGG + chr2_2:61415235-61415254 None:intergenic 55.0%
! CCATTGGCTAACCGTCAACC+TGG - chr2_2:61415232-61415251 Msa0262480:intron 55.0%
AGGAGACAGCACAGGACGCA+AGG - chr2_2:61412491-61412510 Msa0262480:three_prime_UTR 60.0%
AAGGAACGCAGCGCAGCCAT+GGG - chr2_2:61412510-61412529 Msa0262480:three_prime_UTR 60.0%
CAACAGCCACCATGCTCAGG+AGG - chr2_2:61414691-61414710 Msa0262480:intron 60.0%
GCCCGATGGGGTGAATGCTA+AGG - chr2_2:61414960-61414979 Msa0262480:intron 60.0%
CAAGGAACGCAGCGCAGCCA+TGG - chr2_2:61412509-61412528 Msa0262480:three_prime_UTR 65.0%
GGAGAGCCTCCTGAGCATGG+TGG + chr2_2:61414700-61414719 None:intergenic 65.0%
GACGGAGAGCCTCCTGAGCA+TGG + chr2_2:61414703-61414722 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 61412342 61415707 61412342 ID=Msa0262480;Name=Msa0262480
chr2_2 mRNA 61412342 61415707 61412342 ID=Msa0262480-mRNA-1;Parent=Msa0262480;Name=Msa0262480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=186|1|1|1|1|1|4|416|223
chr2_2 exon 61412342 61412835 61412342 ID=Msa0262480-mRNA-1:exon:18906;Parent=Msa0262480-mRNA-1
chr2_2 exon 61413068 61413149 61413068 ID=Msa0262480-mRNA-1:exon:18905;Parent=Msa0262480-mRNA-1
chr2_2 exon 61413275 61413776 61413275 ID=Msa0262480-mRNA-1:exon:18904;Parent=Msa0262480-mRNA-1
chr2_2 exon 61415512 61415707 61415512 ID=Msa0262480-mRNA-1:exon:18903;Parent=Msa0262480-mRNA-1
chr2_2 five_prime_UTR 61415522 61415707 61415522 ID=Msa0262480-mRNA-1:five_prime_utr;Parent=Msa0262480-mRNA-1
chr2_2 CDS 61415512 61415521 61415512 ID=Msa0262480-mRNA-1:cds;Parent=Msa0262480-mRNA-1
chr2_2 CDS 61413275 61413776 61413275 ID=Msa0262480-mRNA-1:cds;Parent=Msa0262480-mRNA-1
chr2_2 CDS 61413068 61413149 61413068 ID=Msa0262480-mRNA-1:cds;Parent=Msa0262480-mRNA-1
chr2_2 CDS 61412758 61412835 61412758 ID=Msa0262480-mRNA-1:cds;Parent=Msa0262480-mRNA-1
chr2_2 three_prime_UTR 61412342 61412757 61412342 ID=Msa0262480-mRNA-1:three_prime_utr;Parent=Msa0262480-mRNA-1
Gene Sequence

>Msa0262480

ATGGGAAGAAGGCCTGCTAGGTGTTACCGTCAAATTAAGAACAAGCCATATCCAAAATCACGATTCTGTCGTGGAGTTCCTGATCCTAAGATCAGGATTTACGATGTTGGCATGAAGAAGAAGGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCCTGCAACAAGTACATGTCAAAGTTTGCAGGAAAGGATGCATTCCACTTGAGAGTCAGGGTTCATCCATTCCATGTACTCAGGATCAACAAGATGCTTTCATGTGCTGGTGCTGATAGGCTTCAAACTGGTATGAGAGGTGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTAGAGTGGCTATTGGGCAGGTGCTCCTTTCTGTCCGTTGCAAGGACAACAACAGCCACCATGCTCAGGAGGCTCTCCGTCGTGCCAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATCGTTAGCAGGAAGTGGGGATTCACAAAGATCAACCGAGCTGAGTATCTGAAGTTGAAATCGGAAAACAGAATTATGCCCGATGGGGTGAATGCTAAGCTTCTTGGATGCCATGGACCATTGGCTAACCGTCAACCTGGAAGAGCTTTTTTGAATGCCAGCTGTAATGAGGCTTAG

Protein sequence

>Msa0262480

MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRAEYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLNASCNEA*