AlfalfaGEDB | Msa0262480

M. sativa cultivar zhongmu-4 / Msa0262480

KEGG: K02866
GO: -
PFAM: PF00252.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262480	XP_013465191.1	100.000	223	0	0	1	223	1	223	4.83e-164	461

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262480	sp\|Q9M5M7\|RL10_EUPES	95.413	218	10	0	1	218	1	218	9.22e-156	433

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262480	G7ZUM0	100.000	223	0	0	1	223	1	223	2.31e-164	461

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0262480	0.832893	7.289956e-56	-8.615850e-47
Msa0002790	Msa0262480	0.857073	2.092118e-62	-8.615850e-47
Msa0003720	Msa0262480	0.824650	7.193391e-54	-8.615850e-47
Msa0004060	Msa0262480	0.814998	1.157619e-51	-8.615850e-47
Msa0004540	Msa0262480	0.843072	1.753896e-58	-8.615850e-47
Msa0006880	Msa0262480	0.831013	2.123637e-55	-8.615850e-47
Msa0007850	Msa0262480	0.878302	3.133545e-69	-8.615850e-47
Msa0010490	Msa0262480	0.802733	4.877310e-49	-8.615850e-47
Msa0012940	Msa0262480	0.856660	2.768587e-62	-8.615850e-47
Msa0014830	Msa0262480	0.802406	5.695047e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262480	MtrunA17_Chr2g0325151	100.000	223	0	1	223	1	223	4.44e-168	461
Msa0262480	MtrunA17_Chr3g0128921	98.649	222	3	1	222	1	222	1.02e-165	456
Msa0262480	MtrunA17_Chr3g0108371	93.119	218	15	1	218	1	218	2.85e-152	421

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262480	AT1G26910.1	88.991	218	24	0	1	218	1	218	1.35e-146	407
Msa0262480	AT1G14320.1	88.532	218	25	0	1	218	1	218	2.16e-145	404
Msa0262480	AT1G66580.1	88.128	219	26	0	1	219	1	219	7.56e-145	403
Msa0262480	AT1G26910.2	87.845	181	22	0	38	218	1	181	9.68e-118	333
Msa0262480	AT1G14320.2	76.596	94	20	1	127	218	31	124	1.19e-45	148
Msa0262480	AT1G14320.2	97.436	39	1	0	38	76	1	39	1.96e-20	83.6

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Find 88 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAATTATGCCCGAT+GGG	0.552482	2_2:-61413080	Msa0262480:CDS
AAAATCTATATATATAGTTA+GGG	0.475543	2_2:+61415589	None:intergenic
AAACAACGTTCAAGAAATTA+TGG	0.291184	2_2:-61415662	Msa0262480:five_prime_UTR
AAACAGAATTATGCCCGATG+GGG	0.689778	2_2:-61413079	Msa0262480:CDS
AAATTATGGATATAGATTTA+TGG	0.263435	2_2:-61415648	Msa0262480:five_prime_UTR
AACAAGATGCTTTCATGTGC+TGG	0.512686	2_2:-61413467	Msa0262480:CDS
AAGATCAGGATTTACGATGT+TGG	0.557539	2_2:-61413677	Msa0262480:CDS
AAGGAACGCAGCGCAGCCAT+GGG	0.507562	2_2:-61415517	Msa0262480:exon
AAGTACATGTCAAAGTTTGC+AGG	0.473692	2_2:-61413545	Msa0262480:CDS
ACATCGTAAATCCTGATCTT+AGG	0.319740	2_2:+61413680	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATCAAATCAATCTTGCA+AGG	-	chr2_2:61412471-61412490	Msa0262480:three_prime_UTR	30.0%
TAATATATTAAGGGTCTGTC+TGG	+	chr2_2:61412996-61413015	None:intergenic	30.0%
TAGTAAGATCAAATTGAGCA+TGG	+	chr2_2:61413251-61413270	None:intergenic	30.0%
TCCCAACACATAATACATAA+TGG	-	chr2_2:61413275-61413294	Msa0262480:CDS	30.0%
CTCCATTATGTATTATGTGT+TGG	+	chr2_2:61413280-61413299	None:intergenic	30.0%
AACAGGGAATTAGTAACAAT+AGG	+	chr2_2:61413654-61413673	None:intergenic	30.0%
TTAGTACTTGGGTATATCTA+TGG	+	chr2_2:61413915-61413934	None:intergenic	30.0%
ACGGTATAATCAGAATAGTA+AGG	+	chr2_2:61414023-61414042	None:intergenic	30.0%
TCAGAAATATCACCATCTTT+CGG	-	chr2_2:61414049-61414068	Msa0262480:intron	30.0%
ACAAATCTACAATCGAAGTA+AGG	+	chr2_2:61414804-61414823	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	61412342	61415707	61412342	ID=Msa0262480;Name=Msa0262480
chr2_2	mRNA	61412342	61415707	61412342	ID=Msa0262480-mRNA-1;Parent=Msa0262480;Name=Msa0262480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=186\|1\|1\|1\|1\|1\|4\|416\|223
chr2_2	exon	61412342	61412835	61412342	ID=Msa0262480-mRNA-1:exon:18906;Parent=Msa0262480-mRNA-1
chr2_2	exon	61413068	61413149	61413068	ID=Msa0262480-mRNA-1:exon:18905;Parent=Msa0262480-mRNA-1
chr2_2	exon	61413275	61413776	61413275	ID=Msa0262480-mRNA-1:exon:18904;Parent=Msa0262480-mRNA-1
chr2_2	exon	61415512	61415707	61415512	ID=Msa0262480-mRNA-1:exon:18903;Parent=Msa0262480-mRNA-1
chr2_2	five_prime_UTR	61415522	61415707	61415522	ID=Msa0262480-mRNA-1:five_prime_utr;Parent=Msa0262480-mRNA-1
chr2_2	CDS	61415512	61415521	61415512	ID=Msa0262480-mRNA-1:cds;Parent=Msa0262480-mRNA-1
chr2_2	CDS	61413275	61413776	61413275	ID=Msa0262480-mRNA-1:cds;Parent=Msa0262480-mRNA-1
chr2_2	CDS	61413068	61413149	61413068	ID=Msa0262480-mRNA-1:cds;Parent=Msa0262480-mRNA-1
chr2_2	CDS	61412758	61412835	61412758	ID=Msa0262480-mRNA-1:cds;Parent=Msa0262480-mRNA-1
chr2_2	three_prime_UTR	61412342	61412757	61412342	ID=Msa0262480-mRNA-1:three_prime_utr;Parent=Msa0262480-mRNA-1

Gene Sequence

>Msa0262480

ATGGGAAGAAGGCCTGCTAGGTGTTACCGTCAAATTAAGAACAAGCCATATCCAAAATCACGATTCTGTCGTGGAGTTCCTGATCCTAAGATCAGGATTTACGATGTTGGCATGAAGAAGAAGGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCCTGCAACAAGTACATGTCAAAGTTTGCAGGAAAGGATGCATTCCACTTGAGAGTCAGGGTTCATCCATTCCATGTACTCAGGATCAACAAGATGCTTTCATGTGCTGGTGCTGATAGGCTTCAAACTGGTATGAGAGGTGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTAGAGTGGCTATTGGGCAGGTGCTCCTTTCTGTCCGTTGCAAGGACAACAACAGCCACCATGCTCAGGAGGCTCTCCGTCGTGCCAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATCGTTAGCAGGAAGTGGGGATTCACAAAGATCAACCGAGCTGAGTATCTGAAGTTGAAATCGGAAAACAGAATTATGCCCGATGGGGTGAATGCTAAGCTTCTTGGATGCCATGGACCATTGGCTAACCGTCAACCTGGAAGAGCTTTTTTGAATGCCAGCTGTAATGAGGCTTAG

Protein sequence

>Msa0262480

MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRAEYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLNASCNEA*