Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174410 | XP_003627287.1 | 89.623 | 212 | 22 | 0 | 1 | 212 | 1 | 212 | 7.47e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174410 | sp|Q6ZBZ2|GL814_ORYSJ | 53.125 | 192 | 85 | 3 | 23 | 212 | 25 | 213 | 6.85e-66 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0236110 | Msa1174410 | 0.810416 | 1.165190e-50 | -8.615850e-47 |
| Msa0314630 | Msa1174410 | 0.814070 | 1.857589e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174410 | MtrunA17_Chr8g0344021 | 89.623 | 212 | 22 | 0 | 1 | 212 | 1 | 212 | 6.87e-136 | 379 |
| Msa1174410 | MtrunA17_Chr8g0344051 | 68.075 | 213 | 66 | 2 | 1 | 212 | 1 | 212 | 6.69e-101 | 291 |
| Msa1174410 | MtrunA17_Chr4g0003361 | 64.455 | 211 | 68 | 5 | 3 | 212 | 1 | 205 | 1.48e-84 | 249 |
| Msa1174410 | MtrunA17_Chr2g0286171 | 60.185 | 216 | 78 | 4 | 1 | 212 | 1 | 212 | 3.66e-81 | 241 |
| Msa1174410 | MtrunA17_Chr2g0301611 | 56.604 | 212 | 89 | 3 | 1 | 212 | 1 | 209 | 4.27e-80 | 238 |
| Msa1174410 | MtrunA17_Chr8g0344031 | 60.094 | 213 | 82 | 3 | 1 | 212 | 1 | 211 | 6.62e-80 | 238 |
| Msa1174410 | MtrunA17_Chr3g0115141 | 58.411 | 214 | 83 | 3 | 1 | 212 | 1 | 210 | 2.02e-79 | 236 |
| Msa1174410 | MtrunA17_Chr3g0084531 | 56.132 | 212 | 90 | 3 | 1 | 212 | 1 | 209 | 6.35e-79 | 235 |
| Msa1174410 | MtrunA17_Chr8g0343934 | 54.717 | 212 | 93 | 3 | 1 | 212 | 1 | 209 | 2.96e-78 | 233 |
| Msa1174410 | MtrunA17_Chr8g0344041 | 55.660 | 212 | 91 | 2 | 1 | 212 | 5 | 213 | 1.90e-77 | 231 |
| Msa1174410 | MtrunA17_Chr2g0297231 | 55.981 | 209 | 89 | 3 | 1 | 209 | 1 | 206 | 4.17e-77 | 230 |
| Msa1174410 | MtrunA17_Chr2g0297241 | 55.450 | 211 | 91 | 3 | 1 | 211 | 1 | 208 | 3.75e-76 | 228 |
| Msa1174410 | MtrunA17_Chr3g0084521 | 56.132 | 212 | 89 | 4 | 1 | 212 | 1 | 208 | 4.27e-76 | 228 |
| Msa1174410 | MtrunA17_Chr3g0084511 | 55.660 | 212 | 90 | 4 | 1 | 212 | 1 | 208 | 5.62e-76 | 227 |
| Msa1174410 | MtrunA17_Chr2g0313961 | 54.502 | 211 | 93 | 3 | 1 | 211 | 1 | 208 | 9.82e-75 | 224 |
| Msa1174410 | MtrunA17_Chr8g0343954 | 55.189 | 212 | 92 | 3 | 1 | 212 | 1 | 209 | 6.72e-73 | 219 |
| Msa1174410 | MtrunA17_Chr2g0302171 | 53.302 | 212 | 96 | 3 | 1 | 212 | 1 | 209 | 2.31e-72 | 218 |
| Msa1174410 | MtrunA17_Chr2g0302541 | 54.245 | 212 | 94 | 3 | 1 | 212 | 1 | 209 | 5.18e-72 | 217 |
| Msa1174410 | MtrunA17_Chr7g0217811 | 54.245 | 212 | 94 | 3 | 1 | 212 | 1 | 209 | 1.43e-71 | 216 |
| Msa1174410 | MtrunA17_Chr5g0411961 | 52.358 | 212 | 98 | 3 | 1 | 212 | 1 | 209 | 2.16e-71 | 216 |
| Msa1174410 | MtrunA17_Chr4g0012651 | 53.774 | 212 | 95 | 3 | 1 | 212 | 1 | 209 | 1.82e-70 | 213 |
| Msa1174410 | MtrunA17_Chr8g0343961 | 50.943 | 212 | 101 | 3 | 1 | 212 | 1 | 209 | 9.97e-69 | 209 |
| Msa1174410 | MtrunA17_Chr2g0300561 | 47.887 | 213 | 107 | 3 | 1 | 212 | 1 | 210 | 2.39e-64 | 198 |
| Msa1174410 | MtrunA17_Chr8g0343921 | 49.758 | 207 | 100 | 3 | 7 | 212 | 4 | 207 | 9.69e-64 | 196 |
| Msa1174410 | MtrunA17_Chr2g0300581 | 45.070 | 213 | 113 | 3 | 1 | 212 | 1 | 210 | 5.77e-63 | 194 |
| Msa1174410 | MtrunA17_Chr2g0300591 | 44.131 | 213 | 115 | 3 | 1 | 212 | 1 | 210 | 4.24e-62 | 192 |
| Msa1174410 | MtrunA17_Chr8g0343911 | 47.867 | 211 | 106 | 4 | 3 | 212 | 1 | 208 | 6.94e-62 | 191 |
| Msa1174410 | MtrunA17_Chr3g0084551 | 45.366 | 205 | 103 | 4 | 1 | 205 | 1 | 196 | 3.93e-52 | 167 |
| Msa1174410 | MtrunA17_Chr6g0449751 | 41.284 | 218 | 107 | 6 | 6 | 208 | 4 | 215 | 3.27e-41 | 139 |
| Msa1174410 | MtrunA17_Chr6g0449731 | 41.014 | 217 | 107 | 6 | 7 | 208 | 5 | 215 | 3.19e-40 | 137 |
| Msa1174410 | MtrunA17_Chr6g0449761 | 40.741 | 216 | 107 | 6 | 8 | 208 | 6 | 215 | 1.22e-39 | 136 |
| Msa1174410 | MtrunA17_Chr6g0449771 | 40.553 | 217 | 108 | 6 | 7 | 208 | 5 | 215 | 1.85e-39 | 135 |
| Msa1174410 | MtrunA17_Chr2g0292831 | 41.885 | 191 | 101 | 3 | 16 | 203 | 19 | 202 | 3.54e-37 | 129 |
| Msa1174410 | MtrunA17_Chr1g0189841 | 38.739 | 222 | 117 | 6 | 1 | 208 | 1 | 217 | 3.61e-37 | 129 |
| Msa1174410 | MtrunA17_Chr1g0193421 | 40.722 | 194 | 111 | 3 | 15 | 205 | 20 | 212 | 5.24e-37 | 128 |
| Msa1174410 | MtrunA17_Chr2g0292901 | 41.579 | 190 | 102 | 3 | 24 | 208 | 28 | 213 | 1.68e-36 | 127 |
| Msa1174410 | MtrunA17_Chr1g0156131 | 41.237 | 194 | 101 | 3 | 13 | 203 | 16 | 199 | 3.80e-36 | 126 |
| Msa1174410 | MtrunA17_Chr6g0449791 | 44.318 | 176 | 86 | 4 | 8 | 173 | 6 | 179 | 1.51e-35 | 124 |
| Msa1174410 | MtrunA17_Chr7g0271211 | 44.706 | 170 | 92 | 2 | 1 | 169 | 2 | 170 | 3.61e-35 | 124 |
| Msa1174410 | MtrunA17_Chr4g0007041 | 39.352 | 216 | 108 | 6 | 1 | 203 | 1 | 206 | 7.90e-35 | 123 |
| Msa1174410 | MtrunA17_Chr1g0178711 | 34.653 | 202 | 124 | 3 | 11 | 205 | 18 | 218 | 1.28e-34 | 122 |
| Msa1174410 | MtrunA17_Chr1g0193671 | 38.835 | 206 | 118 | 5 | 6 | 205 | 8 | 211 | 2.78e-34 | 121 |
| Msa1174410 | MtrunA17_Chr4g0007051 | 39.352 | 216 | 108 | 6 | 1 | 203 | 1 | 206 | 2.80e-34 | 121 |
| Msa1174410 | MtrunA17_Chr2g0285871 | 39.815 | 216 | 107 | 6 | 1 | 203 | 1 | 206 | 2.83e-34 | 121 |
| Msa1174410 | MtrunA17_Chr4g0007031 | 39.352 | 216 | 108 | 6 | 1 | 203 | 1 | 206 | 3.15e-34 | 121 |
| Msa1174410 | MtrunA17_Chr5g0419971 | 39.352 | 216 | 108 | 6 | 1 | 203 | 1 | 206 | 3.15e-34 | 121 |
| Msa1174410 | MtrunA17_Chr5g0419981 | 39.352 | 216 | 108 | 6 | 1 | 203 | 1 | 206 | 3.15e-34 | 121 |
| Msa1174410 | MtrunA17_Chr5g0414971 | 35.897 | 195 | 112 | 5 | 24 | 210 | 32 | 221 | 1.52e-33 | 119 |
| Msa1174410 | MtrunA17_Chr2g0292861 | 42.424 | 165 | 88 | 3 | 43 | 203 | 7 | 168 | 5.65e-31 | 112 |
| Msa1174410 | MtrunA17_Chr1g0210761 | 33.175 | 211 | 130 | 5 | 4 | 211 | 8 | 210 | 9.70e-31 | 112 |
| Msa1174410 | MtrunA17_Chr6g0449781 | 37.089 | 213 | 122 | 5 | 6 | 208 | 4 | 214 | 1.62e-29 | 109 |
| Msa1174410 | MtrunA17_Chr2g0292841 | 42.424 | 165 | 88 | 3 | 43 | 203 | 7 | 168 | 1.95e-29 | 107 |
| Msa1174410 | MtrunA17_Chr8g0335851 | 44.030 | 134 | 73 | 2 | 39 | 171 | 47 | 179 | 1.02e-28 | 107 |
| Msa1174410 | MtrunA17_Chr2g0292911 | 47.863 | 117 | 58 | 1 | 43 | 156 | 7 | 123 | 2.08e-28 | 104 |
| Msa1174410 | MtrunA17_Chr3g0084501 | 49.074 | 108 | 52 | 3 | 1 | 108 | 1 | 105 | 4.69e-26 | 97.1 |
| Msa1174410 | MtrunA17_Chr3g0130241 | 38.235 | 136 | 82 | 2 | 39 | 173 | 110 | 244 | 8.37e-25 | 98.6 |
| Msa1174410 | MtrunA17_Chr2g0321581 | 38.931 | 131 | 78 | 2 | 80 | 208 | 74 | 204 | 2.53e-21 | 87.4 |
| Msa1174410 | MtrunA17_Chr2g0321591 | 38.931 | 131 | 78 | 2 | 80 | 208 | 74 | 204 | 3.74e-21 | 87.0 |
| Msa1174410 | MtrunA17_Chr4g0026191 | 38.060 | 134 | 81 | 2 | 77 | 208 | 72 | 205 | 4.72e-20 | 84.3 |
| Msa1174410 | MtrunA17_Chr4g0026201 | 38.060 | 134 | 81 | 2 | 77 | 208 | 72 | 205 | 5.64e-20 | 84.0 |
| Msa1174410 | MtrunA17_Chr2g0321601 | 37.594 | 133 | 79 | 4 | 79 | 208 | 72 | 203 | 6.34e-20 | 84.0 |
| Msa1174410 | MtrunA17_Chr2g0327651 | 37.755 | 98 | 60 | 1 | 50 | 146 | 10 | 107 | 4.52e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174410 | AT5G20630.1 | 46.698 | 212 | 110 | 3 | 1 | 211 | 1 | 210 | 1.34e-59 | 186 |
| Msa1174410 | AT1G72610.1 | 47.368 | 190 | 98 | 2 | 24 | 212 | 20 | 208 | 2.53e-57 | 180 |
| Msa1174410 | AT5G38960.1 | 43.564 | 202 | 102 | 4 | 20 | 209 | 22 | 223 | 6.55e-44 | 147 |
| Msa1174410 | AT5G38940.1 | 46.154 | 182 | 91 | 3 | 24 | 201 | 31 | 209 | 2.34e-42 | 142 |
| Msa1174410 | AT5G38940.2 | 46.154 | 182 | 91 | 3 | 24 | 201 | 55 | 233 | 5.39e-42 | 142 |
| Msa1174410 | AT3G04200.1 | 42.188 | 192 | 105 | 2 | 24 | 209 | 32 | 223 | 6.26e-42 | 142 |
| Msa1174410 | AT5G39160.3 | 38.636 | 220 | 120 | 5 | 1 | 209 | 1 | 216 | 3.56e-41 | 139 |
| Msa1174410 | AT5G39190.1 | 38.636 | 220 | 124 | 4 | 1 | 209 | 1 | 220 | 3.69e-41 | 139 |
| Msa1174410 | AT5G39160.1 | 38.636 | 220 | 124 | 4 | 1 | 209 | 1 | 220 | 4.11e-41 | 139 |
| Msa1174410 | AT3G05950.1 | 42.632 | 190 | 103 | 2 | 25 | 208 | 32 | 221 | 2.53e-40 | 137 |
| Msa1174410 | AT5G39130.1 | 38.182 | 220 | 125 | 4 | 1 | 209 | 1 | 220 | 5.23e-40 | 136 |
| Msa1174410 | AT5G39110.1 | 41.885 | 191 | 104 | 3 | 25 | 208 | 30 | 220 | 5.46e-40 | 136 |
| Msa1174410 | AT5G38930.1 | 46.341 | 164 | 84 | 2 | 25 | 184 | 32 | 195 | 1.37e-39 | 135 |
| Msa1174410 | AT4G14630.1 | 41.837 | 196 | 97 | 4 | 25 | 208 | 32 | 222 | 2.44e-39 | 135 |
| Msa1174410 | AT5G39120.1 | 39.450 | 218 | 111 | 6 | 6 | 208 | 8 | 219 | 5.11e-39 | 134 |
| Msa1174410 | AT5G39180.1 | 38.182 | 220 | 119 | 4 | 1 | 208 | 5 | 219 | 3.26e-38 | 132 |
| Msa1174410 | AT5G26700.1 | 40.196 | 204 | 115 | 4 | 3 | 205 | 9 | 206 | 3.79e-38 | 131 |
| Msa1174410 | AT5G39150.1 | 38.182 | 220 | 119 | 4 | 1 | 208 | 5 | 219 | 9.88e-38 | 130 |
| Msa1174410 | AT5G38910.1 | 45.930 | 172 | 75 | 6 | 24 | 184 | 29 | 193 | 4.62e-37 | 129 |
| Msa1174410 | AT3G04150.1 | 35.023 | 217 | 133 | 3 | 2 | 212 | 11 | 225 | 6.25e-37 | 129 |
| Msa1174410 | AT1G02335.1 | 36.842 | 209 | 125 | 4 | 4 | 206 | 6 | 213 | 2.31e-36 | 127 |
| Msa1174410 | AT1G09560.1 | 44.571 | 175 | 92 | 3 | 16 | 186 | 18 | 191 | 4.60e-36 | 126 |
| Msa1174410 | AT3G04150.2 | 37.500 | 176 | 104 | 2 | 43 | 212 | 63 | 238 | 2.00e-35 | 125 |
| Msa1174410 | AT3G04190.1 | 38.220 | 191 | 112 | 2 | 24 | 208 | 31 | 221 | 2.86e-35 | 124 |
| Msa1174410 | AT3G05930.1 | 43.386 | 189 | 102 | 4 | 24 | 208 | 28 | 215 | 3.04e-35 | 124 |
| Msa1174410 | AT1G18980.1 | 37.379 | 206 | 123 | 4 | 6 | 208 | 16 | 218 | 4.96e-35 | 124 |
| Msa1174410 | AT5G39190.2 | 37.931 | 174 | 102 | 2 | 42 | 209 | 25 | 198 | 5.93e-34 | 120 |
| Msa1174410 | AT5G39160.2 | 37.931 | 174 | 102 | 2 | 42 | 209 | 25 | 198 | 6.68e-34 | 120 |
| Msa1174410 | AT1G18970.1 | 37.264 | 212 | 124 | 5 | 3 | 208 | 10 | 218 | 1.09e-33 | 120 |
| Msa1174410 | AT5G61750.1 | 37.430 | 179 | 102 | 3 | 1 | 173 | 1 | 175 | 2.14e-33 | 119 |
| Msa1174410 | AT3G62020.1 | 36.842 | 209 | 122 | 5 | 9 | 208 | 8 | 215 | 3.36e-33 | 119 |
| Msa1174410 | AT3G04180.1 | 36.842 | 190 | 114 | 2 | 25 | 208 | 32 | 221 | 8.12e-32 | 115 |
| Msa1174410 | AT3G04170.1 | 37.895 | 190 | 109 | 4 | 25 | 208 | 32 | 218 | 3.84e-31 | 114 |
| Msa1174410 | AT3G62020.2 | 37.931 | 174 | 104 | 3 | 39 | 208 | 13 | 186 | 5.90e-31 | 112 |
| Msa1174410 | AT1G10460.1 | 34.536 | 194 | 107 | 6 | 25 | 203 | 25 | 213 | 4.99e-28 | 105 |
| Msa1174410 | AT3G10080.1 | 33.854 | 192 | 117 | 4 | 24 | 208 | 31 | 219 | 1.26e-26 | 102 |
| Msa1174410 | AT3G10080.2 | 33.854 | 192 | 117 | 4 | 24 | 208 | 102 | 290 | 5.13e-26 | 102 |
| Msa1174410 | AT1G74820.1 | 39.024 | 164 | 86 | 5 | 4 | 156 | 11 | 171 | 1.18e-25 | 99.8 |
| Msa1174410 | AT5G38910.2 | 36.905 | 168 | 57 | 6 | 25 | 184 | 30 | 156 | 1.16e-20 | 85.5 |
Find 34 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACTAGTGCTTTGTTATT+TGG | 0.151155 | 8_1:-5507183 | Msa1174410:CDS |
| TGAAAATGCAATAGTCCTTT+TGG | 0.222682 | 8_1:+5507273 | None:intergenic |
| AGAATAGATATTGGTATAAA+TGG | 0.231195 | 8_1:-5507429 | Msa1174410:CDS |
| GAGGTTAATCCAACTTTAAA+AGG | 0.242984 | 8_1:+5507504 | None:intergenic |
| CTCTTAATCCCGGTGATGTT+TGG | 0.254070 | 8_1:-5507302 | Msa1174410:CDS |
| TATCACACCTACAAAACTTT+TGG | 0.293680 | 8_1:-5507331 | Msa1174410:CDS |
| TTCTTGATGCTGCACAAATT+AGG | 0.325122 | 8_1:-5507122 | Msa1174410:CDS |
| TCTTAATCCCGGTGATGTTT+GGG | 0.351443 | 8_1:-5507301 | Msa1174410:CDS |
| CTTTCATCAGACACTCCTTC+AGG | 0.357904 | 8_1:-5507609 | Msa1174410:CDS |
| CATTGGAGGTAAATGAGATT+AGG | 0.367587 | 8_1:+5507670 | None:intergenic |
| TCTGCAGCAAGAATAGATAT+TGG | 0.394290 | 8_1:-5507438 | Msa1174410:CDS |
| AGGAAGCTTAAGGATGTGTT+TGG | 0.401730 | 8_1:-5507102 | Msa1174410:CDS |
| ATTGGAGGTAAATGAGATTA+GGG | 0.404625 | 8_1:+5507671 | None:intergenic |
| ATTAGTAATTCAGTTGCATC+AGG | 0.442131 | 8_1:+5507384 | None:intergenic |
| TACTCTAGCTTAGCAGCTGC+TGG | 0.445392 | 8_1:-5507540 | Msa1174410:CDS |
| GAATTACTAATCGTTGTTCA+AGG | 0.451387 | 8_1:-5507372 | Msa1174410:CDS |
| AAGGATGTGTTTGGTGGCAG+TGG | 0.462003 | 8_1:-5507093 | Msa1174410:CDS |
| TTTCAAGTTAACTCTGGTGC+TGG | 0.464652 | 8_1:-5507255 | Msa1174410:CDS |
| TGCACAAATTAGGAAGCTTA+AGG | 0.487134 | 8_1:-5507112 | Msa1174410:CDS |
| GCACTAGTTACATGTATGCT+AGG | 0.496669 | 8_1:+5507195 | None:intergenic |
| GTTCAAGGTCAATTTACTGT+TGG | 0.503571 | 8_1:-5507357 | Msa1174410:CDS |
| AGTAATTTACCAGGTCTCAA+TGG | 0.507923 | 8_1:-5507471 | Msa1174410:CDS |
| AGGTTAATCCAACTTTAAAA+GGG | 0.508517 | 8_1:+5507505 | None:intergenic |
| ATCATCAGAGTCAATAGCAT+TGG | 0.511591 | 8_1:+5507653 | None:intergenic |
| ATCAGAGTCAATAGCATTGG+AGG | 0.512491 | 8_1:+5507656 | None:intergenic |
| AAGCTTAAGGATGTGTTTGG+TGG | 0.535264 | 8_1:-5507099 | Msa1174410:CDS |
| TGTGTTTGGTGGCAGTGGCT+AGG | 0.536076 | 8_1:-5507088 | None:intergenic |
| CACTAGTTACATGTATGCTA+GGG | 0.551616 | 8_1:+5507196 | None:intergenic |
| TTGGTGAAAACTCTTAATCC+CGG | 0.558325 | 8_1:-5507312 | Msa1174410:CDS |
| GATTTGCATGGATAGCCTGA+AGG | 0.619224 | 8_1:+5507594 | None:intergenic |
| GTAAATGTCAGTAATTTACC+AGG | 0.629129 | 8_1:-5507480 | Msa1174410:CDS |
| GCATCAGGATGAGTGTGCAT+TGG | 0.654477 | 8_1:+5507399 | None:intergenic |
| AAACTAAGTCCATTGAGACC+TGG | 0.656424 | 8_1:+5507462 | None:intergenic |
| TAAATTACTGACATTTACCG+AGG | 0.660517 | 8_1:+5507485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAGATATTGGTATAAA+TGG | - | chr8_1:5507365-5507384 | Msa1174410:CDS | 20.0% |
| !!! | ACAAATTTTTCTGATTTGCA+TGG | + | chr8_1:5507215-5507234 | None:intergenic | 25.0% |
| !! | AGGTTAATCCAACTTTAAAA+GGG | + | chr8_1:5507292-5507311 | None:intergenic | 25.0% |
| !!! | TTTTAAAGTTGGATTAACCT+CGG | - | chr8_1:5507292-5507311 | Msa1174410:CDS | 25.0% |
| ATTGGAGGTAAATGAGATTA+GGG | + | chr8_1:5507126-5507145 | None:intergenic | 30.0% | |
| GAGGTTAATCCAACTTTAAA+AGG | + | chr8_1:5507293-5507312 | None:intergenic | 30.0% | |
| TAAATTACTGACATTTACCG+AGG | + | chr8_1:5507312-5507331 | None:intergenic | 30.0% | |
| GTAAATGTCAGTAATTTACC+AGG | - | chr8_1:5507314-5507333 | Msa1174410:CDS | 30.0% | |
| ATTAGTAATTCAGTTGCATC+AGG | + | chr8_1:5507413-5507432 | None:intergenic | 30.0% | |
| GAATTACTAATCGTTGTTCA+AGG | - | chr8_1:5507422-5507441 | Msa1174410:CDS | 30.0% | |
| ! | TATCACACCTACAAAACTTT+TGG | - | chr8_1:5507463-5507482 | Msa1174410:CDS | 30.0% |
| !! | GTTTTCACCAAAAGTTTTGT+AGG | + | chr8_1:5507473-5507492 | None:intergenic | 30.0% |
| ! | TGAAAATGCAATAGTCCTTT+TGG | + | chr8_1:5507524-5507543 | None:intergenic | 30.0% |
| !!! | TTGCATTTTCAAGTTAACTC+TGG | - | chr8_1:5507533-5507552 | Msa1174410:CDS | 30.0% |
| !! | GTAACTAGTGCTTTGTTATT+TGG | - | chr8_1:5507611-5507630 | Msa1174410:CDS | 30.0% |
| ! | AAGAGTAGTCTTTTGAATTG+TGG | + | chr8_1:5507654-5507673 | None:intergenic | 30.0% |
| CATTGGAGGTAAATGAGATT+AGG | + | chr8_1:5507127-5507146 | None:intergenic | 35.0% | |
| ATCATCAGAGTCAATAGCAT+TGG | + | chr8_1:5507144-5507163 | None:intergenic | 35.0% | |
| !!! | ACAGCAAACCCTTTTAAAGT+TGG | - | chr8_1:5507281-5507300 | Msa1174410:CDS | 35.0% |
| AGTAATTTACCAGGTCTCAA+TGG | - | chr8_1:5507323-5507342 | Msa1174410:CDS | 35.0% | |
| TCTGCAGCAAGAATAGATAT+TGG | - | chr8_1:5507356-5507375 | Msa1174410:CDS | 35.0% | |
| GTTCAAGGTCAATTTACTGT+TGG | - | chr8_1:5507437-5507456 | Msa1174410:CDS | 35.0% | |
| TTGGTGAAAACTCTTAATCC+CGG | - | chr8_1:5507482-5507501 | Msa1174410:CDS | 35.0% | |
| !! | GATGTTTGGGTTTTTCCAAA+AGG | - | chr8_1:5507506-5507525 | Msa1174410:CDS | 35.0% |
| CACTAGTTACATGTATGCTA+GGG | + | chr8_1:5507601-5507620 | None:intergenic | 35.0% | |
| ! | GTCTTTTGAATTGTGGAAGT+TGG | + | chr8_1:5507647-5507666 | None:intergenic | 35.0% |
| TTCTTGATGCTGCACAAATT+AGG | - | chr8_1:5507672-5507691 | Msa1174410:CDS | 35.0% | |
| TGCACAAATTAGGAAGCTTA+AGG | - | chr8_1:5507682-5507701 | Msa1174410:CDS | 35.0% | |
| ! | ATCAGAGTCAATAGCATTGG+AGG | + | chr8_1:5507141-5507160 | None:intergenic | 40.0% |
| AAACTAAGTCCATTGAGACC+TGG | + | chr8_1:5507335-5507354 | None:intergenic | 40.0% | |
| TCTTAATCCCGGTGATGTTT+GGG | - | chr8_1:5507493-5507512 | Msa1174410:CDS | 40.0% | |
| TGGAAAAACCCAAACATCAC+CGG | + | chr8_1:5507504-5507523 | None:intergenic | 40.0% | |
| !! | TTTCAAGTTAACTCTGGTGC+TGG | - | chr8_1:5507539-5507558 | Msa1174410:CDS | 40.0% |
| GCACTAGTTACATGTATGCT+AGG | + | chr8_1:5507602-5507621 | None:intergenic | 40.0% | |
| AGGAAGCTTAAGGATGTGTT+TGG | - | chr8_1:5507692-5507711 | Msa1174410:CDS | 40.0% | |
| AAGCTTAAGGATGTGTTTGG+TGG | - | chr8_1:5507695-5507714 | Msa1174410:CDS | 40.0% | |
| CTTTCATCAGACACTCCTTC+AGG | - | chr8_1:5507185-5507204 | Msa1174410:CDS | 45.0% | |
| GATTTGCATGGATAGCCTGA+AGG | + | chr8_1:5507203-5507222 | None:intergenic | 45.0% | |
| CTCTTAATCCCGGTGATGTT+TGG | - | chr8_1:5507492-5507511 | Msa1174410:CDS | 45.0% | |
| GGAAAAACCCAAACATCACC+GGG | + | chr8_1:5507503-5507522 | None:intergenic | 45.0% | |
| ! | TACTCTAGCTTAGCAGCTGC+TGG | - | chr8_1:5507254-5507273 | Msa1174410:CDS | 50.0% |
| GCATCAGGATGAGTGTGCAT+TGG | + | chr8_1:5507398-5507417 | None:intergenic | 50.0% | |
| ! | AAGGATGTGTTTGGTGGCAG+TGG | - | chr8_1:5507701-5507720 | Msa1174410:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 5507089 | 5507727 | 5507089 | ID=Msa1174410;Name=Msa1174410 |
| chr8_1 | mRNA | 5507089 | 5507727 | 5507089 | ID=Msa1174410-mRNA-1;Parent=Msa1174410;Name=Msa1174410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|212 |
| chr8_1 | exon | 5507089 | 5507727 | 5507089 | ID=Msa1174410-mRNA-1:exon:1853;Parent=Msa1174410-mRNA-1 |
| chr8_1 | CDS | 5507089 | 5507727 | 5507089 | ID=Msa1174410-mRNA-1:cds;Parent=Msa1174410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
