Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174770 | XP_003627353.1 | 95.333 | 300 | 7 | 1 | 1 | 293 | 1 | 300 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174770 | sp|Q940U6|FLU_ARATH | 73.661 | 224 | 47 | 4 | 81 | 293 | 94 | 316 | 4.33e-111 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174770 | G7L8A8 | 95.333 | 300 | 7 | 1 | 1 | 293 | 1 | 300 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0826800 | Msa1174770 | 0.805324 | 1.410304e-49 | -8.615850e-47 |
| Msa1174770 | Msa1314930 | 0.966963 | 1.253643e-126 | -8.615850e-47 |
| Msa0865520 | Msa1174770 | 0.803471 | 3.432232e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174770 | MtrunA17_Chr8g0344501 | 95.333 | 300 | 7 | 1 | 1 | 293 | 1 | 300 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174770 | AT3G14110.2 | 73.661 | 224 | 47 | 4 | 81 | 293 | 10 | 232 | 7.47e-114 | 328 |
| Msa1174770 | AT3G14110.1 | 73.661 | 224 | 47 | 4 | 81 | 293 | 94 | 316 | 4.40e-112 | 327 |
| Msa1174770 | AT3G14110.3 | 73.661 | 224 | 47 | 4 | 81 | 293 | 95 | 317 | 5.02e-112 | 327 |
Find 75 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGATCAATGCAGCTTTA+AGG | 0.122273 | 8_1:+5951967 | Msa1174770:CDS |
| GAAATTAGCTCCTGCTTCTT+TGG | 0.201498 | 8_1:-5952080 | None:intergenic |
| AACACCAACCTTCACCTTTC+AGG | 0.243830 | 8_1:+5949950 | Msa1174770:CDS |
| CTCTATGCCTTGTAAAGCTT+TGG | 0.314092 | 8_1:+5951279 | Msa1174770:CDS |
| CTGGGAGCACAGAAGCATTT+GGG | 0.333287 | 8_1:+5952716 | Msa1174770:CDS |
| AAATTAGCTCCTGCTTCTTT+GGG | 0.336560 | 8_1:-5952079 | None:intergenic |
| AACTCAGTGAACGCTCTATC+TGG | 0.343166 | 8_1:-5952143 | None:intergenic |
| TCCTTAAAGCTGCATTGATC+TGG | 0.344248 | 8_1:-5951968 | None:intergenic |
| TCTGGGAGCACAGAAGCATT+TGG | 0.389659 | 8_1:+5952715 | Msa1174770:CDS |
| GGGATAACAATGATAATCCT+TGG | 0.411325 | 8_1:-5949793 | None:intergenic |
| CTGCTAGCAGTAGCCCTCAT+TGG | 0.433063 | 8_1:+5951346 | Msa1174770:CDS |
| GTTATCCGCCTCACATGTTT+CGG | 0.433071 | 8_1:-5951302 | None:intergenic |
| CACTTGTCTTTCTTTAAAAG+TGG | 0.436649 | 8_1:+5950602 | Msa1174770:CDS |
| GAAAGAGAAGGAGAAGACTC+TGG | 0.438780 | 8_1:+5952697 | Msa1174770:CDS |
| TTGGAGCAGAATTGAGGAAG+TGG | 0.443371 | 8_1:-5949926 | None:intergenic |
| AAGGTGAAGGTTGGTGTTGT+TGG | 0.445814 | 8_1:-5949945 | None:intergenic |
| TGACAAATATATTGCAAGGT+TGG | 0.466917 | 8_1:+5952795 | Msa1174770:CDS |
| GTGAGGACGAGAGATGAAAC+AGG | 0.481777 | 8_1:-5949900 | None:intergenic |
| AGGGCTACTGCTAGCAGTAT+AGG | 0.484170 | 8_1:-5951340 | None:intergenic |
| ACTTTGAGTTATGCTCCCAT+TGG | 0.484515 | 8_1:+5952020 | Msa1174770:CDS |
| TATTGTTGACCCAAAGAAGC+AGG | 0.485732 | 8_1:+5952070 | Msa1174770:CDS |
| AATGAGAGCAATGGCGGTTG+TGG | 0.486057 | 8_1:+5949868 | Msa1174770:exon |
| CGCTATCCTACCACCACCAA+TGG | 0.489764 | 8_1:-5952036 | None:intergenic |
| TTGAGTTATGCTCCCATTGG+TGG | 0.494886 | 8_1:+5952023 | Msa1174770:CDS |
| ATATATTGCAAGGTTGGAAA+AGG | 0.495847 | 8_1:+5952801 | Msa1174770:CDS |
| GCTTCACTGCTCAAACTGTA+AGG | 0.496267 | 8_1:+5950683 | Msa1174770:CDS |
| GCTGATTGTTACACTGAGCT+TGG | 0.497045 | 8_1:+5952745 | Msa1174770:CDS |
| GTTTCGGCCAAAGCTTTACA+AGG | 0.498723 | 8_1:-5951286 | None:intergenic |
| CTTGGAGACCTTGAGAAAGC+AGG | 0.512469 | 8_1:+5952763 | Msa1174770:CDS |
| AGTATTGCCCTGCTTTCTCA+AGG | 0.519335 | 8_1:-5952771 | None:intergenic |
| TGCAAAGACAAGGAAAGTAC+CGG | 0.523115 | 8_1:+5952635 | Msa1174770:intron |
| CGGTTGGAATTTCAGAAGAC+CGG | 0.526540 | 8_1:-5950659 | None:intergenic |
| TTTGAGCAGTGAAGCACGGT+TGG | 0.527472 | 8_1:-5950675 | None:intergenic |
| TGCTGTTAAATACCATTCGA+TGG | 0.538453 | 8_1:+5952660 | Msa1174770:CDS |
| TGTTCTGAGAGGATAAATGT+TGG | 0.549777 | 8_1:-5949823 | None:intergenic |
| GCTATCCTACCACCACCAAT+GGG | 0.559574 | 8_1:-5952035 | None:intergenic |
| AAAGAGAAGGAGAAGACTCT+GGG | 0.564267 | 8_1:+5952698 | Msa1174770:CDS |
| AATTGAGGAAGTGGAGAGTG+AGG | 0.564867 | 8_1:-5949917 | None:intergenic |
| TCGCAAGAAACGGCAGCGAA+TGG | 0.569309 | 8_1:-5951240 | None:intergenic |
| AGTTATGCTCCCATTGGTGG+TGG | 0.570022 | 8_1:+5952026 | Msa1174770:CDS |
| GTGTTGTTGGAGCAGAATTG+AGG | 0.570951 | 8_1:-5949932 | None:intergenic |
| TTGTCAATCTCTGAAAGAGA+AGG | 0.572006 | 8_1:+5952685 | Msa1174770:CDS |
| GCCCTCATTGGAGCCACTGT+GGG | 0.584271 | 8_1:+5951358 | Msa1174770:CDS |
| ATGGGAGCATAACTCAAAGT+GGG | 0.586412 | 8_1:-5952017 | None:intergenic |
| TTGGAGACCTTGAGAAAGCA+GGG | 0.586734 | 8_1:+5952764 | Msa1174770:CDS |
| TGCAAAACAAATGAGAGCAA+TGG | 0.586786 | 8_1:+5949859 | Msa1174770:exon |
| TGGGAGCACAGAAGCATTTG+GGG | 0.586797 | 8_1:+5952717 | Msa1174770:CDS |
| CTAACCTGAAAGGTGAAGGT+TGG | 0.588563 | 8_1:-5949954 | None:intergenic |
| CTCCCACAGTGGCTCCAATG+AGG | 0.591943 | 8_1:-5951360 | None:intergenic |
| ATAACTAACCTGAAAGGTGA+AGG | 0.599290 | 8_1:-5949958 | None:intergenic |
| AATGGGAGCATAACTCAAAG+TGG | 0.603986 | 8_1:-5952018 | None:intergenic |
| GAATATTAAAGATCCTATTG+AGG | 0.604301 | 8_1:+5952190 | Msa1174770:CDS |
| GACCAAATAACTAACCTGAA+AGG | 0.605027 | 8_1:-5949964 | None:intergenic |
| TCCCACAGTGGCTCCAATGA+GGG | 0.606337 | 8_1:-5951359 | None:intergenic |
| CTCATTGGAGCCACTGTGGG+AGG | 0.607784 | 8_1:+5951361 | Msa1174770:CDS |
| TAGGGTTGGTCGCGAGACAA+AGG | 0.608850 | 8_1:+5951910 | Msa1174770:intron |
| ACAGTTTGAGCAGTGAAGCA+CGG | 0.611538 | 8_1:-5950679 | None:intergenic |
| TCAAAAGTATCTTTCAAGAG+TGG | 0.614683 | 8_1:-5950636 | None:intergenic |
| ACTATGACAAATATATTGCA+AGG | 0.614710 | 8_1:+5952791 | Msa1174770:CDS |
| TCTTTCTTTAAAAGTGGACA+AGG | 0.621291 | 8_1:+5950608 | Msa1174770:CDS |
| ATGCTCCCATTGGTGGTGGT+AGG | 0.631229 | 8_1:+5952030 | Msa1174770:CDS |
| GGTTGTTGTTCTGTTCTGAG+AGG | 0.631823 | 8_1:-5949834 | None:intergenic |
| CATTGGTGGTGGTAGGATAG+CGG | 0.635961 | 8_1:+5952037 | Msa1174770:CDS |
| TGGGAGCATAACTCAAAGTG+GGG | 0.643586 | 8_1:-5952016 | None:intergenic |
| AAAACAAATGAGAGCAATGG+CGG | 0.644299 | 8_1:+5949862 | Msa1174770:exon |
| AGCCCTCATTGGAGCCACTG+TGG | 0.646086 | 8_1:+5951357 | Msa1174770:CDS |
| GCAAAGACAAGGAAAGTACC+GGG | 0.648002 | 8_1:+5952636 | Msa1174770:intron |
| AGCTTTGGCCGAAACATGTG+AGG | 0.648289 | 8_1:+5951294 | Msa1174770:CDS |
| AATGGTATTTAACAGCATCC+CGG | 0.658102 | 8_1:-5952654 | None:intergenic |
| AGATTGACAAAACCATCGAA+TGG | 0.664879 | 8_1:-5952672 | None:intergenic |
| TTTGGCCGAAACATGTGAGG+CGG | 0.674674 | 8_1:+5951297 | Msa1174770:CDS |
| TTGGTCGCGAGACAAAGGAA+AGG | 0.686385 | 8_1:+5951915 | Msa1174770:CDS |
| GGGAGCATAACTCAAAGTGG+GGG | 0.697421 | 8_1:-5952015 | None:intergenic |
| AAAGGAAAGGAGAATTACAG+CGG | 0.729898 | 8_1:+5951928 | Msa1174770:CDS |
| TAGTACCTTACCTCCCACAG+TGG | 0.794975 | 8_1:-5951371 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTATAAAAACAGAAAAA+GGG | - | chr8_1:5950071-5950090 | None:intergenic | 15.0% |
| !! | AATTGTATAAAAACAGAAAA+AGG | - | chr8_1:5950072-5950091 | None:intergenic | 15.0% |
| !!! | ATTTTACTTGTTGATTTAAT+TGG | + | chr8_1:5951497-5951516 | Msa1174770:intron | 15.0% |
| !! | AAAATATGCAAATATTCTTA+TGG | - | chr8_1:5952597-5952616 | None:intergenic | 15.0% |
| !!! | ATTTGCATATTTTATATTAC+AGG | + | chr8_1:5952604-5952623 | Msa1174770:intron | 15.0% |
| !! | ATTGTATAAAAACAGAAAAA+GGG | - | chr8_1:5950071-5950090 | None:intergenic | 15.0% |
| !! | AATTGTATAAAAACAGAAAA+AGG | - | chr8_1:5950072-5950091 | None:intergenic | 15.0% |
| !!! | ATTTTACTTGTTGATTTAAT+TGG | + | chr8_1:5951497-5951516 | Msa1174770:intron | 15.0% |
| !! | AAAATATGCAAATATTCTTA+TGG | - | chr8_1:5952597-5952616 | None:intergenic | 15.0% |
| !!! | ATTTGCATATTTTATATTAC+AGG | + | chr8_1:5952604-5952623 | Msa1174770:intron | 15.0% |
| !! | ACAATTAAAGATTATAGTGA+CGG | - | chr8_1:5950836-5950855 | None:intergenic | 20.0% |
| !! | ACAATCATTTATGAAGATAT+TGG | - | chr8_1:5951144-5951163 | None:intergenic | 20.0% |
| !!! | ATCTTCATAAATGATTGTTT+TGG | + | chr8_1:5951146-5951165 | Msa1174770:intron | 20.0% |
| !! | TTGTGATTTATGATTGAAAA+TGG | + | chr8_1:5951185-5951204 | Msa1174770:intron | 20.0% |
| !! | AGAAGTGAACAAATAAATAA+AGG | + | chr8_1:5951748-5951767 | Msa1174770:intron | 20.0% |
| !!! | CATTTTATTTGTACGTTTTA+TGG | + | chr8_1:5951846-5951865 | Msa1174770:intron | 20.0% |
| !! | CTAATTTCTAAGTTAAAAAG+TGG | + | chr8_1:5952095-5952114 | Msa1174770:CDS | 20.0% |
| !!! | ATATAAAGTAGATTCCATTT+TGG | + | chr8_1:5952445-5952464 | Msa1174770:intron | 20.0% |
| !! | TAAGTATTTGTATGACTATT+TGG | - | chr8_1:5952536-5952555 | None:intergenic | 20.0% |
| !! | ACAATTAAAGATTATAGTGA+CGG | - | chr8_1:5950836-5950855 | None:intergenic | 20.0% |
| !! | ACAATCATTTATGAAGATAT+TGG | - | chr8_1:5951144-5951163 | None:intergenic | 20.0% |
| !!! | ATCTTCATAAATGATTGTTT+TGG | + | chr8_1:5951146-5951165 | Msa1174770:intron | 20.0% |
| !! | TTGTGATTTATGATTGAAAA+TGG | + | chr8_1:5951185-5951204 | Msa1174770:intron | 20.0% |
| !! | AGAAGTGAACAAATAAATAA+AGG | + | chr8_1:5951748-5951767 | Msa1174770:intron | 20.0% |
| !!! | CATTTTATTTGTACGTTTTA+TGG | + | chr8_1:5951846-5951865 | Msa1174770:intron | 20.0% |
| !! | CTAATTTCTAAGTTAAAAAG+TGG | + | chr8_1:5952095-5952114 | Msa1174770:CDS | 20.0% |
| !!! | ATATAAAGTAGATTCCATTT+TGG | + | chr8_1:5952445-5952464 | Msa1174770:intron | 20.0% |
| !! | TAAGTATTTGTATGACTATT+TGG | - | chr8_1:5952536-5952555 | None:intergenic | 20.0% |
| !! | AGGATAAATGTTGGATTTTT+GGG | - | chr8_1:5949817-5949836 | None:intergenic | 25.0% |
| !!! | ATTTTGAAGAAACAAGAAGA+AGG | - | chr8_1:5949989-5950008 | None:intergenic | 25.0% |
| ! | TTTCATCATATACAAGACTT+TGG | + | chr8_1:5950027-5950046 | Msa1174770:intron | 25.0% |
| !! | AATTAAGTTGCTTATCCAAT+AGG | + | chr8_1:5950413-5950432 | Msa1174770:intron | 25.0% |
| ! | AGAAGATACACTAAAATACT+TGG | - | chr8_1:5950440-5950459 | None:intergenic | 25.0% |
| !! | TTTTAGTGTATCTTCTTTAC+TGG | + | chr8_1:5950444-5950463 | Msa1174770:intron | 25.0% |
| !! | AAACTTAACTAGTTTCCATA+AGG | - | chr8_1:5950474-5950493 | None:intergenic | 25.0% |
| ! | GTCAAAATAATGAAAATGTG+TGG | + | chr8_1:5950494-5950513 | Msa1174770:intron | 25.0% |
| !!! | AGTAATTTTTCAGTGAAATG+AGG | + | chr8_1:5950758-5950777 | Msa1174770:intron | 25.0% |
| !! | ATTTGAGTAAACACTCATTT+TGG | + | chr8_1:5950791-5950810 | Msa1174770:intron | 25.0% |
| ! | AGACTAAAACTTCATTTAGT+CGG | + | chr8_1:5951452-5951471 | Msa1174770:intron | 25.0% |
| !!! | AGTTAAGATATTTTGCTATG+TGG | + | chr8_1:5951611-5951630 | Msa1174770:intron | 25.0% |
| ! | AGTGAACAAATAAATAAAGG+TGG | + | chr8_1:5951751-5951770 | Msa1174770:intron | 25.0% |
| ! | ATACAGATATCAGATATTCA+GGG | - | chr8_1:5951784-5951803 | None:intergenic | 25.0% |
| ! | TATACAGATATCAGATATTC+AGG | - | chr8_1:5951785-5951804 | None:intergenic | 25.0% |
| ! | CTGAATTTATTGATCTGATA+GGG | + | chr8_1:5951892-5951911 | Msa1174770:intron | 25.0% |
| !! | AAAGTGGAAAGAATTTTCTA+AGG | + | chr8_1:5952111-5952130 | Msa1174770:CDS | 25.0% |
| ! | GAATATTAAAGATCCTATTG+AGG | + | chr8_1:5952190-5952209 | Msa1174770:CDS | 25.0% |
| ! | ACTATGACAAATATATTGCA+AGG | + | chr8_1:5952791-5952810 | Msa1174770:CDS | 25.0% |
| !! | AGGATAAATGTTGGATTTTT+GGG | - | chr8_1:5949817-5949836 | None:intergenic | 25.0% |
| !!! | ATTTTGAAGAAACAAGAAGA+AGG | - | chr8_1:5949989-5950008 | None:intergenic | 25.0% |
| ! | TTTCATCATATACAAGACTT+TGG | + | chr8_1:5950027-5950046 | Msa1174770:intron | 25.0% |
| !! | AATTAAGTTGCTTATCCAAT+AGG | + | chr8_1:5950413-5950432 | Msa1174770:intron | 25.0% |
| ! | AGAAGATACACTAAAATACT+TGG | - | chr8_1:5950440-5950459 | None:intergenic | 25.0% |
| !! | TTTTAGTGTATCTTCTTTAC+TGG | + | chr8_1:5950444-5950463 | Msa1174770:intron | 25.0% |
| !! | AAACTTAACTAGTTTCCATA+AGG | - | chr8_1:5950474-5950493 | None:intergenic | 25.0% |
| ! | GTCAAAATAATGAAAATGTG+TGG | + | chr8_1:5950494-5950513 | Msa1174770:intron | 25.0% |
| !!! | AGTAATTTTTCAGTGAAATG+AGG | + | chr8_1:5950758-5950777 | Msa1174770:intron | 25.0% |
| !! | ATTTGAGTAAACACTCATTT+TGG | + | chr8_1:5950791-5950810 | Msa1174770:intron | 25.0% |
| ! | AGACTAAAACTTCATTTAGT+CGG | + | chr8_1:5951452-5951471 | Msa1174770:intron | 25.0% |
| !!! | AGTTAAGATATTTTGCTATG+TGG | + | chr8_1:5951611-5951630 | Msa1174770:intron | 25.0% |
| ! | AGTGAACAAATAAATAAAGG+TGG | + | chr8_1:5951751-5951770 | Msa1174770:intron | 25.0% |
| ! | ATACAGATATCAGATATTCA+GGG | - | chr8_1:5951784-5951803 | None:intergenic | 25.0% |
| ! | TATACAGATATCAGATATTC+AGG | - | chr8_1:5951785-5951804 | None:intergenic | 25.0% |
| ! | CTGAATTTATTGATCTGATA+GGG | + | chr8_1:5951892-5951911 | Msa1174770:intron | 25.0% |
| !! | AAAGTGGAAAGAATTTTCTA+AGG | + | chr8_1:5952111-5952130 | Msa1174770:CDS | 25.0% |
| ! | GAATATTAAAGATCCTATTG+AGG | + | chr8_1:5952190-5952209 | Msa1174770:CDS | 25.0% |
| ! | ACTATGACAAATATATTGCA+AGG | + | chr8_1:5952791-5952810 | Msa1174770:CDS | 25.0% |
| ! | GGATAAATGTTGGATTTTTG+GGG | - | chr8_1:5949816-5949835 | None:intergenic | 30.0% |
| ! | GAGGATAAATGTTGGATTTT+TGG | - | chr8_1:5949818-5949837 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAAACAGCTCA+TGG | - | chr8_1:5950260-5950279 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr8_1:5950295-5950314 | None:intergenic | 30.0% |
| ACTAAAATACTTGGACCTAT+TGG | - | chr8_1:5950431-5950450 | None:intergenic | 30.0% | |
| AATAATGAAAATGTGTGGTG+TGG | + | chr8_1:5950499-5950518 | Msa1174770:intron | 30.0% | |
| ! | CACTTGTCTTTCTTTAAAAG+TGG | + | chr8_1:5950602-5950621 | Msa1174770:CDS | 30.0% |
| ! | TCTTTCTTTAAAAGTGGACA+AGG | + | chr8_1:5950608-5950627 | Msa1174770:CDS | 30.0% |
| !! | TCAAAAGTATCTTTCAAGAG+TGG | - | chr8_1:5950639-5950658 | None:intergenic | 30.0% |
| ! | TCTTGAAAGATACTTTTGAC+CGG | + | chr8_1:5950640-5950659 | Msa1174770:CDS | 30.0% |
| GTATCTTTCTTTACTGAGTT+TGG | + | chr8_1:5950883-5950902 | Msa1174770:intron | 30.0% | |
| ACAAACGAAATACACATTTG+AGG | - | chr8_1:5950910-5950929 | None:intergenic | 30.0% | |
| TAGTCCATGAAATTACTATC+AGG | + | chr8_1:5950967-5950986 | Msa1174770:intron | 30.0% | |
| AGTCCATGAAATTACTATCA+GGG | + | chr8_1:5950968-5950987 | Msa1174770:intron | 30.0% | |
| ! | CAAAGCAGGATTTTAGATAA+GGG | - | chr8_1:5951091-5951110 | None:intergenic | 30.0% |
| AAAAAATTGCTCGCAAGAAA+CGG | - | chr8_1:5951253-5951272 | None:intergenic | 30.0% | |
| !!! | GTTTTAGTCTTAAAGCACTT+GGG | - | chr8_1:5951442-5951461 | None:intergenic | 30.0% |
| !!! | AGTTTTAGTCTTAAAGCACT+TGG | - | chr8_1:5951443-5951462 | None:intergenic | 30.0% |
| !! | TGTTGATTTAATTGGTTCGT+CGG | + | chr8_1:5951505-5951524 | Msa1174770:intron | 30.0% |
| ! | TTCGTCGGTTGTATTAATAT+AGG | + | chr8_1:5951520-5951539 | Msa1174770:intron | 30.0% |
| CTGTATATCACAAGTTAAAC+CGG | + | chr8_1:5951798-5951817 | Msa1174770:intron | 30.0% | |
| CCTATCAGATCAATAAATTC+AGG | - | chr8_1:5951894-5951913 | None:intergenic | 30.0% | |
| CCTGAATTTATTGATCTGAT+AGG | + | chr8_1:5951891-5951910 | Msa1174770:intron | 30.0% | |
| ATTTATTGATCTGATAGGGT+TGG | + | chr8_1:5951896-5951915 | Msa1174770:intron | 30.0% | |
| CACATCGATAAGCAAAAATA+AGG | - | chr8_1:5952252-5952271 | None:intergenic | 30.0% | |
| ! | AAGTCTAATGTTGATTGTGT+AGG | - | chr8_1:5952291-5952310 | None:intergenic | 30.0% |
| TGACAAATATATTGCAAGGT+TGG | + | chr8_1:5952795-5952814 | Msa1174770:CDS | 30.0% | |
| ATATATTGCAAGGTTGGAAA+AGG | + | chr8_1:5952801-5952820 | Msa1174770:CDS | 30.0% | |
| ! | GGATAAATGTTGGATTTTTG+GGG | - | chr8_1:5949816-5949835 | None:intergenic | 30.0% |
| ! | GAGGATAAATGTTGGATTTT+TGG | - | chr8_1:5949818-5949837 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAAACAGCTCA+TGG | - | chr8_1:5950260-5950279 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr8_1:5950295-5950314 | None:intergenic | 30.0% |
| ACTAAAATACTTGGACCTAT+TGG | - | chr8_1:5950431-5950450 | None:intergenic | 30.0% | |
| AATAATGAAAATGTGTGGTG+TGG | + | chr8_1:5950499-5950518 | Msa1174770:intron | 30.0% | |
| ! | CACTTGTCTTTCTTTAAAAG+TGG | + | chr8_1:5950602-5950621 | Msa1174770:CDS | 30.0% |
| ! | TCTTTCTTTAAAAGTGGACA+AGG | + | chr8_1:5950608-5950627 | Msa1174770:CDS | 30.0% |
| !! | TCAAAAGTATCTTTCAAGAG+TGG | - | chr8_1:5950639-5950658 | None:intergenic | 30.0% |
| ! | TCTTGAAAGATACTTTTGAC+CGG | + | chr8_1:5950640-5950659 | Msa1174770:CDS | 30.0% |
| GTATCTTTCTTTACTGAGTT+TGG | + | chr8_1:5950883-5950902 | Msa1174770:intron | 30.0% | |
| ACAAACGAAATACACATTTG+AGG | - | chr8_1:5950910-5950929 | None:intergenic | 30.0% | |
| TAGTCCATGAAATTACTATC+AGG | + | chr8_1:5950967-5950986 | Msa1174770:intron | 30.0% | |
| AGTCCATGAAATTACTATCA+GGG | + | chr8_1:5950968-5950987 | Msa1174770:intron | 30.0% | |
| ! | CAAAGCAGGATTTTAGATAA+GGG | - | chr8_1:5951091-5951110 | None:intergenic | 30.0% |
| AAAAAATTGCTCGCAAGAAA+CGG | - | chr8_1:5951253-5951272 | None:intergenic | 30.0% | |
| !!! | GTTTTAGTCTTAAAGCACTT+GGG | - | chr8_1:5951442-5951461 | None:intergenic | 30.0% |
| !!! | AGTTTTAGTCTTAAAGCACT+TGG | - | chr8_1:5951443-5951462 | None:intergenic | 30.0% |
| !! | TGTTGATTTAATTGGTTCGT+CGG | + | chr8_1:5951505-5951524 | Msa1174770:intron | 30.0% |
| ! | TTCGTCGGTTGTATTAATAT+AGG | + | chr8_1:5951520-5951539 | Msa1174770:intron | 30.0% |
| CTGTATATCACAAGTTAAAC+CGG | + | chr8_1:5951798-5951817 | Msa1174770:intron | 30.0% | |
| CCTATCAGATCAATAAATTC+AGG | - | chr8_1:5951894-5951913 | None:intergenic | 30.0% | |
| CCTGAATTTATTGATCTGAT+AGG | + | chr8_1:5951891-5951910 | Msa1174770:intron | 30.0% | |
| ATTTATTGATCTGATAGGGT+TGG | + | chr8_1:5951896-5951915 | Msa1174770:intron | 30.0% | |
| CACATCGATAAGCAAAAATA+AGG | - | chr8_1:5952252-5952271 | None:intergenic | 30.0% | |
| ! | AAGTCTAATGTTGATTGTGT+AGG | - | chr8_1:5952291-5952310 | None:intergenic | 30.0% |
| TGACAAATATATTGCAAGGT+TGG | + | chr8_1:5952795-5952814 | Msa1174770:CDS | 30.0% | |
| ATATATTGCAAGGTTGGAAA+AGG | + | chr8_1:5952801-5952820 | Msa1174770:CDS | 30.0% | |
| GGGATAACAATGATAATCCT+TGG | - | chr8_1:5949796-5949815 | None:intergenic | 35.0% | |
| !! | TGTTCTGAGAGGATAAATGT+TGG | - | chr8_1:5949826-5949845 | None:intergenic | 35.0% |
| !!! | TGCTCTCATTTGTTTTGCAA+AGG | - | chr8_1:5949858-5949877 | None:intergenic | 35.0% |
| TGCAAAACAAATGAGAGCAA+TGG | + | chr8_1:5949859-5949878 | Msa1174770:exon | 35.0% | |
| AAAACAAATGAGAGCAATGG+CGG | + | chr8_1:5949862-5949881 | Msa1174770:exon | 35.0% | |
| ATAACTAACCTGAAAGGTGA+AGG | - | chr8_1:5949961-5949980 | None:intergenic | 35.0% | |
| !! | CACCTTTCAGGTTAGTTATT+TGG | + | chr8_1:5949962-5949981 | Msa1174770:intron | 35.0% |
| GACCAAATAACTAACCTGAA+AGG | - | chr8_1:5949967-5949986 | None:intergenic | 35.0% | |
| !! | TTGGACTTGTTGAATGAATC+AGG | + | chr8_1:5950573-5950592 | Msa1174770:intron | 35.0% |
| CATCCCTGATAGTAATTTCA+TGG | - | chr8_1:5950974-5950993 | None:intergenic | 35.0% | |
| ! | CCAAAGCAGGATTTTAGATA+AGG | - | chr8_1:5951092-5951111 | None:intergenic | 35.0% |
| ! | CCTTATCTAAAATCCTGCTT+TGG | + | chr8_1:5951089-5951108 | Msa1174770:intron | 35.0% |
| !! | CAGTTGATAATTTCCAAAGC+AGG | - | chr8_1:5951105-5951124 | None:intergenic | 35.0% |
| TTGAAAATGGTTGCCTTATC+AGG | + | chr8_1:5951198-5951217 | Msa1174770:intron | 35.0% | |
| GCACAATGTGTTTACTAGTT+AGG | + | chr8_1:5951653-5951672 | Msa1174770:intron | 35.0% | |
| GAAAGCAACATAAAATGCGT+TGG | + | chr8_1:5951715-5951734 | Msa1174770:intron | 35.0% | |
| !! | CCACATTTTAGTAAAAACGC+CGG | - | chr8_1:5951820-5951839 | None:intergenic | 35.0% |
| AAAGGAAAGGAGAATTACAG+CGG | + | chr8_1:5951928-5951947 | Msa1174770:CDS | 35.0% | |
| AAATTAGCTCCTGCTTCTTT+GGG | - | chr8_1:5952082-5952101 | None:intergenic | 35.0% | |
| TCCTATTGAGGAGAAAAAAG+CGG | + | chr8_1:5952202-5952221 | Msa1174770:CDS | 35.0% | |
| ! | ATCGATGTGTGTTTTCTTGA+AGG | + | chr8_1:5952263-5952282 | Msa1174770:intron | 35.0% |
| AGAGACATGTAAGTTCATAC+TGG | + | chr8_1:5952342-5952361 | Msa1174770:intron | 35.0% | |
| GAGACATGTAAGTTCATACT+GGG | + | chr8_1:5952343-5952362 | Msa1174770:intron | 35.0% | |
| AGACATGTAAGTTCATACTG+GGG | + | chr8_1:5952344-5952363 | Msa1174770:intron | 35.0% | |
| !! | ATTCCATTTTGGAGAGCATA+TGG | + | chr8_1:5952456-5952475 | Msa1174770:intron | 35.0% |
| TTTCCATATGCTCTCCAAAA+TGG | - | chr8_1:5952462-5952481 | None:intergenic | 35.0% | |
| AATGGTATTTAACAGCATCC+CGG | - | chr8_1:5952657-5952676 | None:intergenic | 35.0% | |
| TGCTGTTAAATACCATTCGA+TGG | + | chr8_1:5952660-5952679 | Msa1174770:CDS | 35.0% | |
| AGATTGACAAAACCATCGAA+TGG | - | chr8_1:5952675-5952694 | None:intergenic | 35.0% | |
| ! | TTGTCAATCTCTGAAAGAGA+AGG | + | chr8_1:5952685-5952704 | Msa1174770:CDS | 35.0% |
| GGGATAACAATGATAATCCT+TGG | - | chr8_1:5949796-5949815 | None:intergenic | 35.0% | |
| !! | TGTTCTGAGAGGATAAATGT+TGG | - | chr8_1:5949826-5949845 | None:intergenic | 35.0% |
| !!! | TGCTCTCATTTGTTTTGCAA+AGG | - | chr8_1:5949858-5949877 | None:intergenic | 35.0% |
| TGCAAAACAAATGAGAGCAA+TGG | + | chr8_1:5949859-5949878 | Msa1174770:exon | 35.0% | |
| AAAACAAATGAGAGCAATGG+CGG | + | chr8_1:5949862-5949881 | Msa1174770:exon | 35.0% | |
| ATAACTAACCTGAAAGGTGA+AGG | - | chr8_1:5949961-5949980 | None:intergenic | 35.0% | |
| !! | CACCTTTCAGGTTAGTTATT+TGG | + | chr8_1:5949962-5949981 | Msa1174770:intron | 35.0% |
| GACCAAATAACTAACCTGAA+AGG | - | chr8_1:5949967-5949986 | None:intergenic | 35.0% | |
| !! | TTGGACTTGTTGAATGAATC+AGG | + | chr8_1:5950573-5950592 | Msa1174770:intron | 35.0% |
| CATCCCTGATAGTAATTTCA+TGG | - | chr8_1:5950974-5950993 | None:intergenic | 35.0% | |
| ! | CCAAAGCAGGATTTTAGATA+AGG | - | chr8_1:5951092-5951111 | None:intergenic | 35.0% |
| ! | CCTTATCTAAAATCCTGCTT+TGG | + | chr8_1:5951089-5951108 | Msa1174770:intron | 35.0% |
| !! | CAGTTGATAATTTCCAAAGC+AGG | - | chr8_1:5951105-5951124 | None:intergenic | 35.0% |
| TTGAAAATGGTTGCCTTATC+AGG | + | chr8_1:5951198-5951217 | Msa1174770:intron | 35.0% | |
| GCACAATGTGTTTACTAGTT+AGG | + | chr8_1:5951653-5951672 | Msa1174770:intron | 35.0% | |
| GAAAGCAACATAAAATGCGT+TGG | + | chr8_1:5951715-5951734 | Msa1174770:intron | 35.0% | |
| !! | CCACATTTTAGTAAAAACGC+CGG | - | chr8_1:5951820-5951839 | None:intergenic | 35.0% |
| AAAGGAAAGGAGAATTACAG+CGG | + | chr8_1:5951928-5951947 | Msa1174770:CDS | 35.0% | |
| AAATTAGCTCCTGCTTCTTT+GGG | - | chr8_1:5952082-5952101 | None:intergenic | 35.0% | |
| TCCTATTGAGGAGAAAAAAG+CGG | + | chr8_1:5952202-5952221 | Msa1174770:CDS | 35.0% | |
| ! | ATCGATGTGTGTTTTCTTGA+AGG | + | chr8_1:5952263-5952282 | Msa1174770:intron | 35.0% |
| AGAGACATGTAAGTTCATAC+TGG | + | chr8_1:5952342-5952361 | Msa1174770:intron | 35.0% | |
| GAGACATGTAAGTTCATACT+GGG | + | chr8_1:5952343-5952362 | Msa1174770:intron | 35.0% | |
| AGACATGTAAGTTCATACTG+GGG | + | chr8_1:5952344-5952363 | Msa1174770:intron | 35.0% | |
| !! | ATTCCATTTTGGAGAGCATA+TGG | + | chr8_1:5952456-5952475 | Msa1174770:intron | 35.0% |
| TTTCCATATGCTCTCCAAAA+TGG | - | chr8_1:5952462-5952481 | None:intergenic | 35.0% | |
| AATGGTATTTAACAGCATCC+CGG | - | chr8_1:5952657-5952676 | None:intergenic | 35.0% | |
| TGCTGTTAAATACCATTCGA+TGG | + | chr8_1:5952660-5952679 | Msa1174770:CDS | 35.0% | |
| AGATTGACAAAACCATCGAA+TGG | - | chr8_1:5952675-5952694 | None:intergenic | 35.0% | |
| ! | TTGTCAATCTCTGAAAGAGA+AGG | + | chr8_1:5952685-5952704 | Msa1174770:CDS | 35.0% |
| TAGCACTAGTTCATCAACCA+AGG | + | chr8_1:5950142-5950161 | Msa1174770:intron | 40.0% | |
| AGCACTAGTTCATCAACCAA+GGG | + | chr8_1:5950143-5950162 | Msa1174770:intron | 40.0% | |
| ! | TCATCAACCAAGGGCATATT+TGG | + | chr8_1:5950152-5950171 | Msa1174770:intron | 40.0% |
| AGTCAATCCAAATATGCCCT+TGG | - | chr8_1:5950162-5950181 | None:intergenic | 40.0% | |
| AGACTGTTTGAGAAAGCTTG+TGG | + | chr8_1:5950216-5950235 | Msa1174770:intron | 40.0% | |
| AAGACAGTGATACTCACATG+AGG | + | chr8_1:5950550-5950569 | Msa1174770:intron | 40.0% | |
| TTTGGCATGTCATCCTGATA+AGG | - | chr8_1:5951214-5951233 | None:intergenic | 40.0% | |
| CTCTATGCCTTGTAAAGCTT+TGG | + | chr8_1:5951279-5951298 | Msa1174770:CDS | 40.0% | |
| TAAACACATTGTGCTCTCAG+AGG | - | chr8_1:5951647-5951666 | None:intergenic | 40.0% | |
| ! | CCGGCGTTTTTACTAAAATG+TGG | + | chr8_1:5951817-5951836 | Msa1174770:intron | 40.0% |
| TCCAGATCAATGCAGCTTTA+AGG | + | chr8_1:5951967-5951986 | Msa1174770:CDS | 40.0% | |
| ! | TCCTTAAAGCTGCATTGATC+TGG | - | chr8_1:5951971-5951990 | None:intergenic | 40.0% |
| ! | ATGGGAGCATAACTCAAAGT+GGG | - | chr8_1:5952020-5952039 | None:intergenic | 40.0% |
| ! | AATGGGAGCATAACTCAAAG+TGG | - | chr8_1:5952021-5952040 | None:intergenic | 40.0% |
| ! | ACTTTGAGTTATGCTCCCAT+TGG | + | chr8_1:5952020-5952039 | Msa1174770:CDS | 40.0% |
| TATTGTTGACCCAAAGAAGC+AGG | + | chr8_1:5952070-5952089 | Msa1174770:CDS | 40.0% | |
| GAAATTAGCTCCTGCTTCTT+TGG | - | chr8_1:5952083-5952102 | None:intergenic | 40.0% | |
| ! | TGCAAAGACAAGGAAAGTAC+CGG | + | chr8_1:5952635-5952654 | Msa1174770:intron | 40.0% |
| AAAGAGAAGGAGAAGACTCT+GGG | + | chr8_1:5952698-5952717 | Msa1174770:CDS | 40.0% | |
| TAGCACTAGTTCATCAACCA+AGG | + | chr8_1:5950142-5950161 | Msa1174770:intron | 40.0% | |
| AGCACTAGTTCATCAACCAA+GGG | + | chr8_1:5950143-5950162 | Msa1174770:intron | 40.0% | |
| ! | TCATCAACCAAGGGCATATT+TGG | + | chr8_1:5950152-5950171 | Msa1174770:intron | 40.0% |
| AGTCAATCCAAATATGCCCT+TGG | - | chr8_1:5950162-5950181 | None:intergenic | 40.0% | |
| AGACTGTTTGAGAAAGCTTG+TGG | + | chr8_1:5950216-5950235 | Msa1174770:intron | 40.0% | |
| AAGACAGTGATACTCACATG+AGG | + | chr8_1:5950550-5950569 | Msa1174770:intron | 40.0% | |
| TTTGGCATGTCATCCTGATA+AGG | - | chr8_1:5951214-5951233 | None:intergenic | 40.0% | |
| CTCTATGCCTTGTAAAGCTT+TGG | + | chr8_1:5951279-5951298 | Msa1174770:CDS | 40.0% | |
| TAAACACATTGTGCTCTCAG+AGG | - | chr8_1:5951647-5951666 | None:intergenic | 40.0% | |
| ! | CCGGCGTTTTTACTAAAATG+TGG | + | chr8_1:5951817-5951836 | Msa1174770:intron | 40.0% |
| TCCAGATCAATGCAGCTTTA+AGG | + | chr8_1:5951967-5951986 | Msa1174770:CDS | 40.0% | |
| ! | TCCTTAAAGCTGCATTGATC+TGG | - | chr8_1:5951971-5951990 | None:intergenic | 40.0% |
| ! | ATGGGAGCATAACTCAAAGT+GGG | - | chr8_1:5952020-5952039 | None:intergenic | 40.0% |
| ! | AATGGGAGCATAACTCAAAG+TGG | - | chr8_1:5952021-5952040 | None:intergenic | 40.0% |
| ! | ACTTTGAGTTATGCTCCCAT+TGG | + | chr8_1:5952020-5952039 | Msa1174770:CDS | 40.0% |
| TATTGTTGACCCAAAGAAGC+AGG | + | chr8_1:5952070-5952089 | Msa1174770:CDS | 40.0% | |
| GAAATTAGCTCCTGCTTCTT+TGG | - | chr8_1:5952083-5952102 | None:intergenic | 40.0% | |
| ! | TGCAAAGACAAGGAAAGTAC+CGG | + | chr8_1:5952635-5952654 | Msa1174770:intron | 40.0% |
| AAAGAGAAGGAGAAGACTCT+GGG | + | chr8_1:5952698-5952717 | Msa1174770:CDS | 40.0% | |
| ! | GGTTGTTGTTCTGTTCTGAG+AGG | - | chr8_1:5949837-5949856 | None:intergenic | 45.0% |
| AATTGAGGAAGTGGAGAGTG+AGG | - | chr8_1:5949920-5949939 | None:intergenic | 45.0% | |
| TTGGAGCAGAATTGAGGAAG+TGG | - | chr8_1:5949929-5949948 | None:intergenic | 45.0% | |
| ! | GTGTTGTTGGAGCAGAATTG+AGG | - | chr8_1:5949935-5949954 | None:intergenic | 45.0% |
| !! | AAGGTGAAGGTTGGTGTTGT+TGG | - | chr8_1:5949948-5949967 | None:intergenic | 45.0% |
| AACACCAACCTTCACCTTTC+AGG | + | chr8_1:5949950-5949969 | Msa1174770:CDS | 45.0% | |
| CTAACCTGAAAGGTGAAGGT+TGG | - | chr8_1:5949957-5949976 | None:intergenic | 45.0% | |
| AAGCTATCTTGGAGAGCTCA+TGG | - | chr8_1:5950284-5950303 | None:intergenic | 45.0% | |
| TTCTTTACTGGCACGCCTTA+TGG | + | chr8_1:5950456-5950475 | Msa1174770:intron | 45.0% | |
| TGAAAATGTGTGGTGTGGTG+TGG | + | chr8_1:5950504-5950523 | Msa1174770:intron | 45.0% | |
| CAGTGATACTCACATGAGGT+TGG | + | chr8_1:5950554-5950573 | Msa1174770:intron | 45.0% | |
| CGGTTGGAATTTCAGAAGAC+CGG | - | chr8_1:5950662-5950681 | None:intergenic | 45.0% | |
| ACAGTTTGAGCAGTGAAGCA+CGG | - | chr8_1:5950682-5950701 | None:intergenic | 45.0% | |
| GCTTCACTGCTCAAACTGTA+AGG | + | chr8_1:5950683-5950702 | Msa1174770:CDS | 45.0% | |
| ! | ATTTTCGTCCCTAATGTGCG+AGG | - | chr8_1:5951038-5951057 | None:intergenic | 45.0% |
| ! | GGCAGCGAATGGAATCTTTT+TGG | - | chr8_1:5951232-5951251 | None:intergenic | 45.0% |
| GTTTCGGCCAAAGCTTTACA+AGG | - | chr8_1:5951289-5951308 | None:intergenic | 45.0% | |
| GTTATCCGCCTCACATGTTT+CGG | - | chr8_1:5951305-5951324 | None:intergenic | 45.0% | |
| ! | ATAACTCAAAGTGGGGGCAT+AGG | - | chr8_1:5952012-5952031 | None:intergenic | 45.0% |
| ! | TGGGAGCATAACTCAAAGTG+GGG | - | chr8_1:5952019-5952038 | None:intergenic | 45.0% |
| TTGAGTTATGCTCCCATTGG+TGG | + | chr8_1:5952023-5952042 | Msa1174770:CDS | 45.0% | |
| AACTCAGTGAACGCTCTATC+TGG | - | chr8_1:5952146-5952165 | None:intergenic | 45.0% | |
| !!! | GCCGCTTTTTTCTCCTCAAT+AGG | - | chr8_1:5952206-5952225 | None:intergenic | 45.0% |
| TTGAGGAGAAAAAAGCGGCT+AGG | + | chr8_1:5952207-5952226 | Msa1174770:CDS | 45.0% | |
| TGAGGAGAAAAAAGCGGCTA+GGG | + | chr8_1:5952208-5952227 | Msa1174770:CDS | 45.0% | |
| GGAGCTTCATTGCAAAGACA+AGG | + | chr8_1:5952625-5952644 | Msa1174770:intron | 45.0% | |
| !! | GCAAAGACAAGGAAAGTACC+GGG | + | chr8_1:5952636-5952655 | Msa1174770:intron | 45.0% |
| GAAAGAGAAGGAGAAGACTC+TGG | + | chr8_1:5952697-5952716 | Msa1174770:CDS | 45.0% | |
| GCTGATTGTTACACTGAGCT+TGG | + | chr8_1:5952745-5952764 | Msa1174770:CDS | 45.0% | |
| TTGGAGACCTTGAGAAAGCA+GGG | + | chr8_1:5952764-5952783 | Msa1174770:CDS | 45.0% | |
| AGTATTGCCCTGCTTTCTCA+AGG | - | chr8_1:5952774-5952793 | None:intergenic | 45.0% | |
| ! | GGTTGTTGTTCTGTTCTGAG+AGG | - | chr8_1:5949837-5949856 | None:intergenic | 45.0% |
| AATTGAGGAAGTGGAGAGTG+AGG | - | chr8_1:5949920-5949939 | None:intergenic | 45.0% | |
| TTGGAGCAGAATTGAGGAAG+TGG | - | chr8_1:5949929-5949948 | None:intergenic | 45.0% | |
| ! | GTGTTGTTGGAGCAGAATTG+AGG | - | chr8_1:5949935-5949954 | None:intergenic | 45.0% |
| !! | AAGGTGAAGGTTGGTGTTGT+TGG | - | chr8_1:5949948-5949967 | None:intergenic | 45.0% |
| AACACCAACCTTCACCTTTC+AGG | + | chr8_1:5949950-5949969 | Msa1174770:CDS | 45.0% | |
| CTAACCTGAAAGGTGAAGGT+TGG | - | chr8_1:5949957-5949976 | None:intergenic | 45.0% | |
| AAGCTATCTTGGAGAGCTCA+TGG | - | chr8_1:5950284-5950303 | None:intergenic | 45.0% | |
| TTCTTTACTGGCACGCCTTA+TGG | + | chr8_1:5950456-5950475 | Msa1174770:intron | 45.0% | |
| TGAAAATGTGTGGTGTGGTG+TGG | + | chr8_1:5950504-5950523 | Msa1174770:intron | 45.0% | |
| CAGTGATACTCACATGAGGT+TGG | + | chr8_1:5950554-5950573 | Msa1174770:intron | 45.0% | |
| CGGTTGGAATTTCAGAAGAC+CGG | - | chr8_1:5950662-5950681 | None:intergenic | 45.0% | |
| ACAGTTTGAGCAGTGAAGCA+CGG | - | chr8_1:5950682-5950701 | None:intergenic | 45.0% | |
| GCTTCACTGCTCAAACTGTA+AGG | + | chr8_1:5950683-5950702 | Msa1174770:CDS | 45.0% | |
| ! | ATTTTCGTCCCTAATGTGCG+AGG | - | chr8_1:5951038-5951057 | None:intergenic | 45.0% |
| ! | GGCAGCGAATGGAATCTTTT+TGG | - | chr8_1:5951232-5951251 | None:intergenic | 45.0% |
| GTTTCGGCCAAAGCTTTACA+AGG | - | chr8_1:5951289-5951308 | None:intergenic | 45.0% | |
| GTTATCCGCCTCACATGTTT+CGG | - | chr8_1:5951305-5951324 | None:intergenic | 45.0% | |
| ! | ATAACTCAAAGTGGGGGCAT+AGG | - | chr8_1:5952012-5952031 | None:intergenic | 45.0% |
| ! | TGGGAGCATAACTCAAAGTG+GGG | - | chr8_1:5952019-5952038 | None:intergenic | 45.0% |
| TTGAGTTATGCTCCCATTGG+TGG | + | chr8_1:5952023-5952042 | Msa1174770:CDS | 45.0% | |
| AACTCAGTGAACGCTCTATC+TGG | - | chr8_1:5952146-5952165 | None:intergenic | 45.0% | |
| !!! | GCCGCTTTTTTCTCCTCAAT+AGG | - | chr8_1:5952206-5952225 | None:intergenic | 45.0% |
| TTGAGGAGAAAAAAGCGGCT+AGG | + | chr8_1:5952207-5952226 | Msa1174770:CDS | 45.0% | |
| TGAGGAGAAAAAAGCGGCTA+GGG | + | chr8_1:5952208-5952227 | Msa1174770:CDS | 45.0% | |
| GGAGCTTCATTGCAAAGACA+AGG | + | chr8_1:5952625-5952644 | Msa1174770:intron | 45.0% | |
| !! | GCAAAGACAAGGAAAGTACC+GGG | + | chr8_1:5952636-5952655 | Msa1174770:intron | 45.0% |
| GAAAGAGAAGGAGAAGACTC+TGG | + | chr8_1:5952697-5952716 | Msa1174770:CDS | 45.0% | |
| GCTGATTGTTACACTGAGCT+TGG | + | chr8_1:5952745-5952764 | Msa1174770:CDS | 45.0% | |
| TTGGAGACCTTGAGAAAGCA+GGG | + | chr8_1:5952764-5952783 | Msa1174770:CDS | 45.0% | |
| AGTATTGCCCTGCTTTCTCA+AGG | - | chr8_1:5952774-5952793 | None:intergenic | 45.0% | |
| !!! | TTACTTTAAATTTTTTATTA+CGG | + | chr8_1:5951064-5951083 | Msa1174770:intron | 5.0% |
| !!! | TTACTTTAAATTTTTTATTA+CGG | + | chr8_1:5951064-5951083 | Msa1174770:intron | 5.0% |
| AATGAGAGCAATGGCGGTTG+TGG | + | chr8_1:5949868-5949887 | Msa1174770:exon | 50.0% | |
| GTGAGGACGAGAGATGAAAC+AGG | - | chr8_1:5949903-5949922 | None:intergenic | 50.0% | |
| TGGTGTGGTGTGGTGTGATA+TGG | + | chr8_1:5950514-5950533 | Msa1174770:intron | 50.0% | |
| TTTGAGCAGTGAAGCACGGT+TGG | - | chr8_1:5950678-5950697 | None:intergenic | 50.0% | |
| TGACACTGCCTCGCACATTA+GGG | + | chr8_1:5951027-5951046 | Msa1174770:intron | 50.0% | |
| ! | AGCTTTGGCCGAAACATGTG+AGG | + | chr8_1:5951294-5951313 | Msa1174770:CDS | 50.0% |
| TTTGGCCGAAACATGTGAGG+CGG | + | chr8_1:5951297-5951316 | Msa1174770:CDS | 50.0% | |
| AGGGCTACTGCTAGCAGTAT+AGG | - | chr8_1:5951343-5951362 | None:intergenic | 50.0% | |
| TAGTACCTTACCTCCCACAG+TGG | - | chr8_1:5951374-5951393 | None:intergenic | 50.0% | |
| TTGGTCGCGAGACAAAGGAA+AGG | + | chr8_1:5951915-5951934 | Msa1174770:CDS | 50.0% | |
| ! | GGGAGCATAACTCAAAGTGG+GGG | - | chr8_1:5952018-5952037 | None:intergenic | 50.0% |
| AGTTATGCTCCCATTGGTGG+TGG | + | chr8_1:5952026-5952045 | Msa1174770:CDS | 50.0% | |
| GCTATCCTACCACCACCAAT+GGG | - | chr8_1:5952038-5952057 | None:intergenic | 50.0% | |
| !! | CATTGGTGGTGGTAGGATAG+CGG | + | chr8_1:5952037-5952056 | Msa1174770:CDS | 50.0% |
| GAGGAGAAAAAAGCGGCTAG+GGG | + | chr8_1:5952209-5952228 | Msa1174770:CDS | 50.0% | |
| AAAAAAGCGGCTAGGGGTCT+AGG | + | chr8_1:5952215-5952234 | Msa1174770:CDS | 50.0% | |
| !! | TCTGGGAGCACAGAAGCATT+TGG | + | chr8_1:5952715-5952734 | Msa1174770:CDS | 50.0% |
| !! | CTGGGAGCACAGAAGCATTT+GGG | + | chr8_1:5952716-5952735 | Msa1174770:CDS | 50.0% |
| !! | TGGGAGCACAGAAGCATTTG+GGG | + | chr8_1:5952717-5952736 | Msa1174770:CDS | 50.0% |
| CTTGGAGACCTTGAGAAAGC+AGG | + | chr8_1:5952763-5952782 | Msa1174770:CDS | 50.0% | |
| AATGAGAGCAATGGCGGTTG+TGG | + | chr8_1:5949868-5949887 | Msa1174770:exon | 50.0% | |
| GTGAGGACGAGAGATGAAAC+AGG | - | chr8_1:5949903-5949922 | None:intergenic | 50.0% | |
| TGGTGTGGTGTGGTGTGATA+TGG | + | chr8_1:5950514-5950533 | Msa1174770:intron | 50.0% | |
| TTTGAGCAGTGAAGCACGGT+TGG | - | chr8_1:5950678-5950697 | None:intergenic | 50.0% | |
| TGACACTGCCTCGCACATTA+GGG | + | chr8_1:5951027-5951046 | Msa1174770:intron | 50.0% | |
| ! | AGCTTTGGCCGAAACATGTG+AGG | + | chr8_1:5951294-5951313 | Msa1174770:CDS | 50.0% |
| TTTGGCCGAAACATGTGAGG+CGG | + | chr8_1:5951297-5951316 | Msa1174770:CDS | 50.0% | |
| AGGGCTACTGCTAGCAGTAT+AGG | - | chr8_1:5951343-5951362 | None:intergenic | 50.0% | |
| TAGTACCTTACCTCCCACAG+TGG | - | chr8_1:5951374-5951393 | None:intergenic | 50.0% | |
| TTGGTCGCGAGACAAAGGAA+AGG | + | chr8_1:5951915-5951934 | Msa1174770:CDS | 50.0% | |
| ! | GGGAGCATAACTCAAAGTGG+GGG | - | chr8_1:5952018-5952037 | None:intergenic | 50.0% |
| AGTTATGCTCCCATTGGTGG+TGG | + | chr8_1:5952026-5952045 | Msa1174770:CDS | 50.0% | |
| GCTATCCTACCACCACCAAT+GGG | - | chr8_1:5952038-5952057 | None:intergenic | 50.0% | |
| !! | CATTGGTGGTGGTAGGATAG+CGG | + | chr8_1:5952037-5952056 | Msa1174770:CDS | 50.0% |
| GAGGAGAAAAAAGCGGCTAG+GGG | + | chr8_1:5952209-5952228 | Msa1174770:CDS | 50.0% | |
| AAAAAAGCGGCTAGGGGTCT+AGG | + | chr8_1:5952215-5952234 | Msa1174770:CDS | 50.0% | |
| !! | TCTGGGAGCACAGAAGCATT+TGG | + | chr8_1:5952715-5952734 | Msa1174770:CDS | 50.0% |
| !! | CTGGGAGCACAGAAGCATTT+GGG | + | chr8_1:5952716-5952735 | Msa1174770:CDS | 50.0% |
| !! | TGGGAGCACAGAAGCATTTG+GGG | + | chr8_1:5952717-5952736 | Msa1174770:CDS | 50.0% |
| CTTGGAGACCTTGAGAAAGC+AGG | + | chr8_1:5952763-5952782 | Msa1174770:CDS | 50.0% | |
| GTGACACTGCCTCGCACATT+AGG | + | chr8_1:5951026-5951045 | Msa1174770:intron | 55.0% | |
| TCGCAAGAAACGGCAGCGAA+TGG | - | chr8_1:5951243-5951262 | None:intergenic | 55.0% | |
| CTGCTAGCAGTAGCCCTCAT+TGG | + | chr8_1:5951346-5951365 | Msa1174770:CDS | 55.0% | |
| TCCCACAGTGGCTCCAATGA+GGG | - | chr8_1:5951362-5951381 | None:intergenic | 55.0% | |
| !! | TAGGGTTGGTCGCGAGACAA+AGG | + | chr8_1:5951910-5951929 | Msa1174770:intron | 55.0% |
| !! | ATGCTCCCATTGGTGGTGGT+AGG | + | chr8_1:5952030-5952049 | Msa1174770:CDS | 55.0% |
| CGCTATCCTACCACCACCAA+TGG | - | chr8_1:5952039-5952058 | None:intergenic | 55.0% | |
| GTGACACTGCCTCGCACATT+AGG | + | chr8_1:5951026-5951045 | Msa1174770:intron | 55.0% | |
| TCGCAAGAAACGGCAGCGAA+TGG | - | chr8_1:5951243-5951262 | None:intergenic | 55.0% | |
| CTGCTAGCAGTAGCCCTCAT+TGG | + | chr8_1:5951346-5951365 | Msa1174770:CDS | 55.0% | |
| TCCCACAGTGGCTCCAATGA+GGG | - | chr8_1:5951362-5951381 | None:intergenic | 55.0% | |
| !! | TAGGGTTGGTCGCGAGACAA+AGG | + | chr8_1:5951910-5951929 | Msa1174770:intron | 55.0% |
| !! | ATGCTCCCATTGGTGGTGGT+AGG | + | chr8_1:5952030-5952049 | Msa1174770:CDS | 55.0% |
| CGCTATCCTACCACCACCAA+TGG | - | chr8_1:5952039-5952058 | None:intergenic | 55.0% | |
| AGCCCTCATTGGAGCCACTG+TGG | + | chr8_1:5951357-5951376 | Msa1174770:CDS | 60.0% | |
| GCCCTCATTGGAGCCACTGT+GGG | + | chr8_1:5951358-5951377 | Msa1174770:CDS | 60.0% | |
| CTCCCACAGTGGCTCCAATG+AGG | - | chr8_1:5951363-5951382 | None:intergenic | 60.0% | |
| CTCATTGGAGCCACTGTGGG+AGG | + | chr8_1:5951361-5951380 | Msa1174770:CDS | 60.0% | |
| TGGAGCCACTGTGGGAGGTA+AGG | + | chr8_1:5951366-5951385 | Msa1174770:intron | 60.0% | |
| AGCCCTCATTGGAGCCACTG+TGG | + | chr8_1:5951357-5951376 | Msa1174770:CDS | 60.0% | |
| GCCCTCATTGGAGCCACTGT+GGG | + | chr8_1:5951358-5951377 | Msa1174770:CDS | 60.0% | |
| CTCCCACAGTGGCTCCAATG+AGG | - | chr8_1:5951363-5951382 | None:intergenic | 60.0% | |
| CTCATTGGAGCCACTGTGGG+AGG | + | chr8_1:5951361-5951380 | Msa1174770:CDS | 60.0% | |
| TGGAGCCACTGTGGGAGGTA+AGG | + | chr8_1:5951366-5951385 | Msa1174770:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 5949781 | 5952828 | 5949781 | ID=Msa1174770;Name=Msa1174770 |
| chr8_1 | mRNA | 5949781 | 5952828 | 5949781 | ID=Msa1174770-mRNA-1;Parent=Msa1174770;Name=Msa1174770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=88|0.75|0.8|1|1|1|5|0|293 |
| chr8_1 | exon | 5949781 | 5949971 | 5949781 | ID=Msa1174770-mRNA-1:exon:1979;Parent=Msa1174770-mRNA-1 |
| chr8_1 | exon | 5950595 | 5950704 | 5950595 | ID=Msa1174770-mRNA-1:exon:1980;Parent=Msa1174770-mRNA-1 |
| chr8_1 | exon | 5951220 | 5951382 | 5951220 | ID=Msa1174770-mRNA-1:exon:1981;Parent=Msa1174770-mRNA-1 |
| chr8_1 | exon | 5951913 | 5952236 | 5951913 | ID=Msa1174770-mRNA-1:exon:1982;Parent=Msa1174770-mRNA-1 |
| chr8_1 | exon | 5952647 | 5952828 | 5952647 | ID=Msa1174770-mRNA-1:exon:1983;Parent=Msa1174770-mRNA-1 |
| chr8_1 | five_prime_UTR | 5949781 | 5949868 | 5949781 | ID=Msa1174770-mRNA-1:five_prime_utr;Parent=Msa1174770-mRNA-1 |
| chr8_1 | CDS | 5949869 | 5949971 | 5949869 | ID=Msa1174770-mRNA-1:cds;Parent=Msa1174770-mRNA-1 |
| chr8_1 | CDS | 5950595 | 5950704 | 5950595 | ID=Msa1174770-mRNA-1:cds;Parent=Msa1174770-mRNA-1 |
| chr8_1 | CDS | 5951220 | 5951382 | 5951220 | ID=Msa1174770-mRNA-1:cds;Parent=Msa1174770-mRNA-1 |
| chr8_1 | CDS | 5951913 | 5952236 | 5951913 | ID=Msa1174770-mRNA-1:cds;Parent=Msa1174770-mRNA-1 |
| chr8_1 | CDS | 5952647 | 5952828 | 5952647 | ID=Msa1174770-mRNA-1:cds;Parent=Msa1174770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
