Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314930 | XP_003627353.1 | 95.333 | 300 | 7 | 1 | 1 | 293 | 1 | 300 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314930 | sp|Q940U6|FLU_ARATH | 73.661 | 224 | 47 | 4 | 81 | 293 | 94 | 316 | 4.33e-111 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314930 | G7L8A8 | 95.333 | 300 | 7 | 1 | 1 | 293 | 1 | 300 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234840 | Msa1314930 | 0.836118 | 1.128394e-56 | -8.615850e-47 |
| Msa1174770 | Msa1314930 | 0.966963 | 1.253643e-126 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314930 | MtrunA17_Chr8g0344501 | 95.333 | 300 | 7 | 1 | 1 | 293 | 1 | 300 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314930 | AT3G14110.2 | 73.661 | 224 | 47 | 4 | 81 | 293 | 10 | 232 | 7.47e-114 | 328 |
| Msa1314930 | AT3G14110.1 | 73.661 | 224 | 47 | 4 | 81 | 293 | 94 | 316 | 4.40e-112 | 327 |
| Msa1314930 | AT3G14110.3 | 73.661 | 224 | 47 | 4 | 81 | 293 | 95 | 317 | 5.02e-112 | 327 |
Find 75 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGATCAATGCAGCTTTA+AGG | 0.122273 | 8_4:+14040372 | Msa1314930:CDS |
| GAAATTAGCTCCTGCTTCTT+TGG | 0.201498 | 8_4:-14040485 | None:intergenic |
| AACACCAACCTTCACCTTTC+AGG | 0.243830 | 8_4:+14038354 | Msa1314930:CDS |
| CTCTATGCCTTGTAAAGCTT+TGG | 0.314092 | 8_4:+14039684 | Msa1314930:CDS |
| CTGGGAGCACAGAAGCATTT+GGG | 0.333287 | 8_4:+14041121 | Msa1314930:CDS |
| AAATTAGCTCCTGCTTCTTT+GGG | 0.336560 | 8_4:-14040484 | None:intergenic |
| AACTCAGTGAACGCTCTATC+TGG | 0.343166 | 8_4:-14040548 | None:intergenic |
| TCCTTAAAGCTGCATTGATC+TGG | 0.344248 | 8_4:-14040373 | None:intergenic |
| TCTGGGAGCACAGAAGCATT+TGG | 0.389659 | 8_4:+14041120 | Msa1314930:CDS |
| GGGATAACAATGATAATCCT+TGG | 0.411325 | 8_4:-14038197 | None:intergenic |
| CTGCTAGCAGTAGCCCTCAT+TGG | 0.433063 | 8_4:+14039751 | Msa1314930:CDS |
| GTTATCCGCCTCACATGTTT+CGG | 0.433071 | 8_4:-14039707 | None:intergenic |
| CACTTGTCTTTCTTTAAAAG+TGG | 0.436649 | 8_4:+14039006 | Msa1314930:CDS |
| GAAAGAGAAGGAGAAGACTC+TGG | 0.438780 | 8_4:+14041102 | Msa1314930:CDS |
| TTGGAGCAGAATTGAGGAAG+TGG | 0.443371 | 8_4:-14038330 | None:intergenic |
| AAGGTGAAGGTTGGTGTTGT+TGG | 0.445814 | 8_4:-14038349 | None:intergenic |
| TGACAAATATATTGCAAGGT+TGG | 0.466917 | 8_4:+14041200 | Msa1314930:CDS |
| GTGAGGACGAGAGATGAAAC+AGG | 0.481777 | 8_4:-14038304 | None:intergenic |
| AGGGCTACTGCTAGCAGTAT+AGG | 0.484170 | 8_4:-14039745 | None:intergenic |
| ACTTTGAGTTATGCTCCCAT+TGG | 0.484515 | 8_4:+14040425 | Msa1314930:CDS |
| TATTGTTGACCCAAAGAAGC+AGG | 0.485732 | 8_4:+14040475 | Msa1314930:CDS |
| AATGAGAGCAATGGCGGTTG+TGG | 0.486057 | 8_4:+14038272 | Msa1314930:exon |
| CGCTATCCTACCACCACCAA+TGG | 0.489764 | 8_4:-14040441 | None:intergenic |
| TTGAGTTATGCTCCCATTGG+TGG | 0.494886 | 8_4:+14040428 | Msa1314930:CDS |
| ATATATTGCAAGGTTGGAAA+AGG | 0.495847 | 8_4:+14041206 | Msa1314930:CDS |
| GCTTCACTGCTCAAACTGTA+AGG | 0.496267 | 8_4:+14039087 | Msa1314930:CDS |
| GCTGATTGTTACACTGAGCT+TGG | 0.497045 | 8_4:+14041150 | Msa1314930:CDS |
| GTTTCGGCCAAAGCTTTACA+AGG | 0.498723 | 8_4:-14039691 | None:intergenic |
| CTTGGAGACCTTGAGAAAGC+AGG | 0.512469 | 8_4:+14041168 | Msa1314930:CDS |
| AGTATTGCCCTGCTTTCTCA+AGG | 0.519335 | 8_4:-14041176 | None:intergenic |
| TGCAAAGACAAGGAAAGTAC+CGG | 0.523115 | 8_4:+14041040 | Msa1314930:intron |
| CGGTTGGAATTTCAGAAGAC+CGG | 0.526540 | 8_4:-14039063 | None:intergenic |
| TTTGAGCAGTGAAGCACGGT+TGG | 0.527472 | 8_4:-14039079 | None:intergenic |
| TGCTGTTAAATACCATTCGA+TGG | 0.538453 | 8_4:+14041065 | Msa1314930:CDS |
| TGTTCTGAGAGGATAAATGT+TGG | 0.549777 | 8_4:-14038227 | None:intergenic |
| GCTATCCTACCACCACCAAT+GGG | 0.559574 | 8_4:-14040440 | None:intergenic |
| AAAGAGAAGGAGAAGACTCT+GGG | 0.564267 | 8_4:+14041103 | Msa1314930:CDS |
| AATTGAGGAAGTGGAGAGTG+AGG | 0.564867 | 8_4:-14038321 | None:intergenic |
| TCGCAAGAAACGGCAGCGAA+TGG | 0.569309 | 8_4:-14039645 | None:intergenic |
| AGTTATGCTCCCATTGGTGG+TGG | 0.570022 | 8_4:+14040431 | Msa1314930:CDS |
| GTGTTGTTGGAGCAGAATTG+AGG | 0.570951 | 8_4:-14038336 | None:intergenic |
| TTGTCAATCTCTGAAAGAGA+AGG | 0.572006 | 8_4:+14041090 | Msa1314930:CDS |
| GCCCTCATTGGAGCCACTGT+GGG | 0.584271 | 8_4:+14039763 | Msa1314930:CDS |
| ATGGGAGCATAACTCAAAGT+GGG | 0.586412 | 8_4:-14040422 | None:intergenic |
| TTGGAGACCTTGAGAAAGCA+GGG | 0.586734 | 8_4:+14041169 | Msa1314930:CDS |
| TGCAAAACAAATGAGAGCAA+TGG | 0.586786 | 8_4:+14038263 | Msa1314930:exon |
| TGGGAGCACAGAAGCATTTG+GGG | 0.586797 | 8_4:+14041122 | Msa1314930:CDS |
| CTAACCTGAAAGGTGAAGGT+TGG | 0.588563 | 8_4:-14038358 | None:intergenic |
| CTCCCACAGTGGCTCCAATG+AGG | 0.591943 | 8_4:-14039765 | None:intergenic |
| ATAACTAACCTGAAAGGTGA+AGG | 0.599290 | 8_4:-14038362 | None:intergenic |
| AATGGGAGCATAACTCAAAG+TGG | 0.603986 | 8_4:-14040423 | None:intergenic |
| GAATATTAAAGATCCTATTG+AGG | 0.604301 | 8_4:+14040595 | Msa1314930:CDS |
| GACCAAATAACTAACCTGAA+AGG | 0.605027 | 8_4:-14038368 | None:intergenic |
| TCCCACAGTGGCTCCAATGA+GGG | 0.606337 | 8_4:-14039764 | None:intergenic |
| CTCATTGGAGCCACTGTGGG+AGG | 0.607784 | 8_4:+14039766 | Msa1314930:CDS |
| TAGGGTTGGTCGCGAGACAA+AGG | 0.608850 | 8_4:+14040315 | Msa1314930:intron |
| ACAGTTTGAGCAGTGAAGCA+CGG | 0.611538 | 8_4:-14039083 | None:intergenic |
| TCAAAAGTATCTTTCAAGAG+TGG | 0.614683 | 8_4:-14039040 | None:intergenic |
| ACTATGACAAATATATTGCA+AGG | 0.614710 | 8_4:+14041196 | Msa1314930:CDS |
| TCTTTCTTTAAAAGTGGACA+AGG | 0.621291 | 8_4:+14039012 | Msa1314930:CDS |
| ATGCTCCCATTGGTGGTGGT+AGG | 0.631229 | 8_4:+14040435 | Msa1314930:CDS |
| GGTTGTTGTTCTGTTCTGAG+AGG | 0.631823 | 8_4:-14038238 | None:intergenic |
| CATTGGTGGTGGTAGGATAG+CGG | 0.635961 | 8_4:+14040442 | Msa1314930:CDS |
| TGGGAGCATAACTCAAAGTG+GGG | 0.643586 | 8_4:-14040421 | None:intergenic |
| AAAACAAATGAGAGCAATGG+CGG | 0.644299 | 8_4:+14038266 | Msa1314930:exon |
| AGCCCTCATTGGAGCCACTG+TGG | 0.646086 | 8_4:+14039762 | Msa1314930:CDS |
| GCAAAGACAAGGAAAGTACC+GGG | 0.648002 | 8_4:+14041041 | Msa1314930:intron |
| AGCTTTGGCCGAAACATGTG+AGG | 0.648289 | 8_4:+14039699 | Msa1314930:CDS |
| AATGGTATTTAACAGCATCC+CGG | 0.658102 | 8_4:-14041059 | None:intergenic |
| AGATTGACAAAACCATCGAA+TGG | 0.664879 | 8_4:-14041077 | None:intergenic |
| TTTGGCCGAAACATGTGAGG+CGG | 0.674674 | 8_4:+14039702 | Msa1314930:CDS |
| TTGGTCGCGAGACAAAGGAA+AGG | 0.686385 | 8_4:+14040320 | Msa1314930:CDS |
| GGGAGCATAACTCAAAGTGG+GGG | 0.697421 | 8_4:-14040420 | None:intergenic |
| AAAGGAAAGGAGAATTACAG+CGG | 0.729898 | 8_4:+14040333 | Msa1314930:CDS |
| TAGTACCTTACCTCCCACAG+TGG | 0.794975 | 8_4:-14039776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTCTTAAATTTTTTATTA+CGG | + | chr8_4:14039469-14039488 | Msa1314930:intron | 10.0% |
| !! | ATTGTATAAAAACAGAAAAA+GGG | - | chr8_4:14038475-14038494 | None:intergenic | 15.0% |
| !! | AATTGTATAAAAACAGAAAA+AGG | - | chr8_4:14038476-14038495 | None:intergenic | 15.0% |
| !!! | ATTTTACTTGTTGATTTAAT+TGG | + | chr8_4:14039902-14039921 | Msa1314930:intron | 15.0% |
| !! | AAAATATGCAAATATTCTTA+TGG | - | chr8_4:14041002-14041021 | None:intergenic | 15.0% |
| !!! | ATTTGCATATTTTATATTAC+AGG | + | chr8_4:14041009-14041028 | Msa1314930:intron | 15.0% |
| !! | ACAATTAAAGATTATAGTGA+CGG | - | chr8_4:14039240-14039259 | None:intergenic | 20.0% |
| !! | ACAATCATTTATGAAGATAT+TGG | - | chr8_4:14039549-14039568 | None:intergenic | 20.0% |
| !!! | ATCTTCATAAATGATTGTTT+TGG | + | chr8_4:14039551-14039570 | Msa1314930:intron | 20.0% |
| !! | TTGTGATTTATGATTGAAAA+TGG | + | chr8_4:14039590-14039609 | Msa1314930:intron | 20.0% |
| !! | AGAAGTGAACAAATAAATAA+AGG | + | chr8_4:14040153-14040172 | Msa1314930:intron | 20.0% |
| !!! | CATTTTATTTGTACGTTTTA+TGG | + | chr8_4:14040251-14040270 | Msa1314930:intron | 20.0% |
| !! | CTAATTTCTAAGTTAAAAAG+TGG | + | chr8_4:14040500-14040519 | Msa1314930:CDS | 20.0% |
| !!! | ATATAAAGTAGATTCCATTT+TGG | + | chr8_4:14040850-14040869 | Msa1314930:intron | 20.0% |
| !! | TAAGTATTTGTATGACTATT+TGG | - | chr8_4:14040941-14040960 | None:intergenic | 20.0% |
| !! | AGGATAAATGTTGGATTTTT+GGG | - | chr8_4:14038221-14038240 | None:intergenic | 25.0% |
| !!! | ATTTTGAAGAAACAAGAAGA+AGG | - | chr8_4:14038393-14038412 | None:intergenic | 25.0% |
| ! | TTTCATCATATACAAGACTT+TGG | + | chr8_4:14038431-14038450 | Msa1314930:intron | 25.0% |
| !! | AATTAAGTTGCTTATCCAAT+AGG | + | chr8_4:14038817-14038836 | Msa1314930:intron | 25.0% |
| ! | AGAAGATACACTAAAATACT+TGG | - | chr8_4:14038844-14038863 | None:intergenic | 25.0% |
| !! | TTTTAGTGTATCTTCTTTAC+TGG | + | chr8_4:14038848-14038867 | Msa1314930:intron | 25.0% |
| !! | AAACTTAACTAGTTTCCATA+AGG | - | chr8_4:14038878-14038897 | None:intergenic | 25.0% |
| ! | GTCAAAATAATGAAAATGTG+TGG | + | chr8_4:14038898-14038917 | Msa1314930:intron | 25.0% |
| !!! | AGTAATTTTTCAGTGAAATG+AGG | + | chr8_4:14039162-14039181 | Msa1314930:intron | 25.0% |
| !! | ATTTGAGTAAACACTCATTT+TGG | + | chr8_4:14039195-14039214 | Msa1314930:intron | 25.0% |
| ! | AGACTAAAACTTCATTTAGT+CGG | + | chr8_4:14039857-14039876 | Msa1314930:intron | 25.0% |
| !!! | AGTTAAGATATTTTGCTATG+TGG | + | chr8_4:14040016-14040035 | Msa1314930:intron | 25.0% |
| ! | AGTGAACAAATAAATAAAGG+TGG | + | chr8_4:14040156-14040175 | Msa1314930:intron | 25.0% |
| ! | ATACAGATATCAGATATTCA+AGG | - | chr8_4:14040189-14040208 | None:intergenic | 25.0% |
| ! | CTGAATTTATTGATCTGATA+GGG | + | chr8_4:14040297-14040316 | Msa1314930:intron | 25.0% |
| !! | AAAGTGGAAAGAATTTTCTA+AGG | + | chr8_4:14040516-14040535 | Msa1314930:CDS | 25.0% |
| ! | GAATATTAAAGATCCTATTG+AGG | + | chr8_4:14040595-14040614 | Msa1314930:CDS | 25.0% |
| ! | ACTATGACAAATATATTGCA+AGG | + | chr8_4:14041196-14041215 | Msa1314930:CDS | 25.0% |
| ! | GGATAAATGTTGGATTTTTG+GGG | - | chr8_4:14038220-14038239 | None:intergenic | 30.0% |
| ! | GAGGATAAATGTTGGATTTT+TGG | - | chr8_4:14038222-14038241 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAAACAGCTCA+TGG | - | chr8_4:14038664-14038683 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr8_4:14038699-14038718 | None:intergenic | 30.0% |
| ACTAAAATACTTGGACCTAT+TGG | - | chr8_4:14038835-14038854 | None:intergenic | 30.0% | |
| AATAATGAAAATGTGTGGTG+TGG | + | chr8_4:14038903-14038922 | Msa1314930:intron | 30.0% | |
| ! | CACTTGTCTTTCTTTAAAAG+TGG | + | chr8_4:14039006-14039025 | Msa1314930:CDS | 30.0% |
| ! | TCTTTCTTTAAAAGTGGACA+AGG | + | chr8_4:14039012-14039031 | Msa1314930:CDS | 30.0% |
| !! | TCAAAAGTATCTTTCAAGAG+TGG | - | chr8_4:14039043-14039062 | None:intergenic | 30.0% |
| ! | TCTTGAAAGATACTTTTGAC+CGG | + | chr8_4:14039044-14039063 | Msa1314930:CDS | 30.0% |
| GTATCTTTCTTTACTGAGTT+TGG | + | chr8_4:14039287-14039306 | Msa1314930:intron | 30.0% | |
| ACAAACGAAATACACATTTG+AGG | - | chr8_4:14039314-14039333 | None:intergenic | 30.0% | |
| TAGTCCATGAAATTACTATC+AGG | + | chr8_4:14039371-14039390 | Msa1314930:intron | 30.0% | |
| AGTCCATGAAATTACTATCA+GGG | + | chr8_4:14039372-14039391 | Msa1314930:intron | 30.0% | |
| ! | CAAAGCAGGATTTTAGATAA+GGG | - | chr8_4:14039496-14039515 | None:intergenic | 30.0% |
| AAAAAATTGCTCGCAAGAAA+CGG | - | chr8_4:14039658-14039677 | None:intergenic | 30.0% | |
| !!! | GTTTTAGTCTTAAAGCACTT+GGG | - | chr8_4:14039847-14039866 | None:intergenic | 30.0% |
| !!! | AGTTTTAGTCTTAAAGCACT+TGG | - | chr8_4:14039848-14039867 | None:intergenic | 30.0% |
| !! | TGTTGATTTAATTGGTTCGT+CGG | + | chr8_4:14039910-14039929 | Msa1314930:intron | 30.0% |
| ! | TTCGTCGGTTGTATTAATAT+AGG | + | chr8_4:14039925-14039944 | Msa1314930:intron | 30.0% |
| CTGTATATCACAAGTTAAAC+CGG | + | chr8_4:14040203-14040222 | Msa1314930:intron | 30.0% | |
| CCTATCAGATCAATAAATTC+AGG | - | chr8_4:14040299-14040318 | None:intergenic | 30.0% | |
| CCTGAATTTATTGATCTGAT+AGG | + | chr8_4:14040296-14040315 | Msa1314930:intron | 30.0% | |
| ATTTATTGATCTGATAGGGT+TGG | + | chr8_4:14040301-14040320 | Msa1314930:intron | 30.0% | |
| CACATCGATAAGCAAAAATA+AGG | - | chr8_4:14040657-14040676 | None:intergenic | 30.0% | |
| ! | AAGTCTAATGTTGATTGTGT+AGG | - | chr8_4:14040696-14040715 | None:intergenic | 30.0% |
| TGACAAATATATTGCAAGGT+TGG | + | chr8_4:14041200-14041219 | Msa1314930:CDS | 30.0% | |
| ATATATTGCAAGGTTGGAAA+AGG | + | chr8_4:14041206-14041225 | Msa1314930:CDS | 30.0% | |
| GGGATAACAATGATAATCCT+TGG | - | chr8_4:14038200-14038219 | None:intergenic | 35.0% | |
| !! | TGTTCTGAGAGGATAAATGT+TGG | - | chr8_4:14038230-14038249 | None:intergenic | 35.0% |
| !!! | TGCTCTCATTTGTTTTGCAA+AGG | - | chr8_4:14038262-14038281 | None:intergenic | 35.0% |
| TGCAAAACAAATGAGAGCAA+TGG | + | chr8_4:14038263-14038282 | Msa1314930:exon | 35.0% | |
| AAAACAAATGAGAGCAATGG+CGG | + | chr8_4:14038266-14038285 | Msa1314930:exon | 35.0% | |
| ATAACTAACCTGAAAGGTGA+AGG | - | chr8_4:14038365-14038384 | None:intergenic | 35.0% | |
| !! | CACCTTTCAGGTTAGTTATT+TGG | + | chr8_4:14038366-14038385 | Msa1314930:intron | 35.0% |
| GACCAAATAACTAACCTGAA+AGG | - | chr8_4:14038371-14038390 | None:intergenic | 35.0% | |
| !! | TTGGACTTGTTGAATGAATC+AGG | + | chr8_4:14038977-14038996 | Msa1314930:intron | 35.0% |
| CATCCCTGATAGTAATTTCA+TGG | - | chr8_4:14039378-14039397 | None:intergenic | 35.0% | |
| ! | CCAAAGCAGGATTTTAGATA+AGG | - | chr8_4:14039497-14039516 | None:intergenic | 35.0% |
| ! | CCTTATCTAAAATCCTGCTT+TGG | + | chr8_4:14039494-14039513 | Msa1314930:intron | 35.0% |
| !! | CAGTTGATAATTTCCAAAGC+AGG | - | chr8_4:14039510-14039529 | None:intergenic | 35.0% |
| TTGAAAATGGTTGCCTTATC+AGG | + | chr8_4:14039603-14039622 | Msa1314930:intron | 35.0% | |
| GCACAATGTGTTTACTAGTT+AGG | + | chr8_4:14040058-14040077 | Msa1314930:intron | 35.0% | |
| GAAAGCAACATAAAATGCGT+TGG | + | chr8_4:14040120-14040139 | Msa1314930:intron | 35.0% | |
| !! | CCACATTTTAGTAAAAACGC+CGG | - | chr8_4:14040225-14040244 | None:intergenic | 35.0% |
| AAAGGAAAGGAGAATTACAG+CGG | + | chr8_4:14040333-14040352 | Msa1314930:CDS | 35.0% | |
| AAATTAGCTCCTGCTTCTTT+GGG | - | chr8_4:14040487-14040506 | None:intergenic | 35.0% | |
| TCCTATTGAGGAGAAAAAAG+CGG | + | chr8_4:14040607-14040626 | Msa1314930:CDS | 35.0% | |
| ! | ATCGATGTGTGTTTTCTTGA+AGG | + | chr8_4:14040668-14040687 | Msa1314930:intron | 35.0% |
| AGAGACATGTAAGTTCATAC+TGG | + | chr8_4:14040747-14040766 | Msa1314930:intron | 35.0% | |
| GAGACATGTAAGTTCATACT+GGG | + | chr8_4:14040748-14040767 | Msa1314930:intron | 35.0% | |
| AGACATGTAAGTTCATACTG+GGG | + | chr8_4:14040749-14040768 | Msa1314930:intron | 35.0% | |
| !! | ATTCCATTTTGGAGAGCATA+TGG | + | chr8_4:14040861-14040880 | Msa1314930:intron | 35.0% |
| TTTCCATATGCTCTCCAAAA+TGG | - | chr8_4:14040867-14040886 | None:intergenic | 35.0% | |
| AATGGTATTTAACAGCATCC+CGG | - | chr8_4:14041062-14041081 | None:intergenic | 35.0% | |
| TGCTGTTAAATACCATTCGA+TGG | + | chr8_4:14041065-14041084 | Msa1314930:CDS | 35.0% | |
| AGATTGACAAAACCATCGAA+TGG | - | chr8_4:14041080-14041099 | None:intergenic | 35.0% | |
| ! | TTGTCAATCTCTGAAAGAGA+AGG | + | chr8_4:14041090-14041109 | Msa1314930:CDS | 35.0% |
| TAGCACTAGTTCATCAACCA+AGG | + | chr8_4:14038546-14038565 | Msa1314930:intron | 40.0% | |
| AGCACTAGTTCATCAACCAA+GGG | + | chr8_4:14038547-14038566 | Msa1314930:intron | 40.0% | |
| ! | TCATCAACCAAGGGCATATT+TGG | + | chr8_4:14038556-14038575 | Msa1314930:intron | 40.0% |
| AGTCAATCCAAATATGCCCT+TGG | - | chr8_4:14038566-14038585 | None:intergenic | 40.0% | |
| AGACTGTTTGAGAAAGCTTG+TGG | + | chr8_4:14038620-14038639 | Msa1314930:intron | 40.0% | |
| AAGACAGTGATACTCACATG+AGG | + | chr8_4:14038954-14038973 | Msa1314930:intron | 40.0% | |
| TTTGGCATGTCATCCTGATA+AGG | - | chr8_4:14039619-14039638 | None:intergenic | 40.0% | |
| CTCTATGCCTTGTAAAGCTT+TGG | + | chr8_4:14039684-14039703 | Msa1314930:CDS | 40.0% | |
| TAAACACATTGTGCTCTCAG+AGG | - | chr8_4:14040052-14040071 | None:intergenic | 40.0% | |
| ! | CCGGCGTTTTTACTAAAATG+TGG | + | chr8_4:14040222-14040241 | Msa1314930:intron | 40.0% |
| TCCAGATCAATGCAGCTTTA+AGG | + | chr8_4:14040372-14040391 | Msa1314930:CDS | 40.0% | |
| ! | TCCTTAAAGCTGCATTGATC+TGG | - | chr8_4:14040376-14040395 | None:intergenic | 40.0% |
| ! | ATGGGAGCATAACTCAAAGT+GGG | - | chr8_4:14040425-14040444 | None:intergenic | 40.0% |
| ! | AATGGGAGCATAACTCAAAG+TGG | - | chr8_4:14040426-14040445 | None:intergenic | 40.0% |
| ! | ACTTTGAGTTATGCTCCCAT+TGG | + | chr8_4:14040425-14040444 | Msa1314930:CDS | 40.0% |
| TATTGTTGACCCAAAGAAGC+AGG | + | chr8_4:14040475-14040494 | Msa1314930:CDS | 40.0% | |
| GAAATTAGCTCCTGCTTCTT+TGG | - | chr8_4:14040488-14040507 | None:intergenic | 40.0% | |
| ! | TGCAAAGACAAGGAAAGTAC+CGG | + | chr8_4:14041040-14041059 | Msa1314930:intron | 40.0% |
| AAAGAGAAGGAGAAGACTCT+GGG | + | chr8_4:14041103-14041122 | Msa1314930:CDS | 40.0% | |
| ! | GGTTGTTGTTCTGTTCTGAG+AGG | - | chr8_4:14038241-14038260 | None:intergenic | 45.0% |
| AATTGAGGAAGTGGAGAGTG+AGG | - | chr8_4:14038324-14038343 | None:intergenic | 45.0% | |
| TTGGAGCAGAATTGAGGAAG+TGG | - | chr8_4:14038333-14038352 | None:intergenic | 45.0% | |
| ! | GTGTTGTTGGAGCAGAATTG+AGG | - | chr8_4:14038339-14038358 | None:intergenic | 45.0% |
| !! | AAGGTGAAGGTTGGTGTTGT+TGG | - | chr8_4:14038352-14038371 | None:intergenic | 45.0% |
| AACACCAACCTTCACCTTTC+AGG | + | chr8_4:14038354-14038373 | Msa1314930:CDS | 45.0% | |
| CTAACCTGAAAGGTGAAGGT+TGG | - | chr8_4:14038361-14038380 | None:intergenic | 45.0% | |
| AAGCTATCTTGGAGAGCTCA+TGG | - | chr8_4:14038688-14038707 | None:intergenic | 45.0% | |
| TTCTTTACTGGCACGCCTTA+TGG | + | chr8_4:14038860-14038879 | Msa1314930:intron | 45.0% | |
| TGAAAATGTGTGGTGTGGTG+TGG | + | chr8_4:14038908-14038927 | Msa1314930:intron | 45.0% | |
| CAGTGATACTCACATGAGGT+TGG | + | chr8_4:14038958-14038977 | Msa1314930:intron | 45.0% | |
| CGGTTGGAATTTCAGAAGAC+CGG | - | chr8_4:14039066-14039085 | None:intergenic | 45.0% | |
| ACAGTTTGAGCAGTGAAGCA+CGG | - | chr8_4:14039086-14039105 | None:intergenic | 45.0% | |
| GCTTCACTGCTCAAACTGTA+AGG | + | chr8_4:14039087-14039106 | Msa1314930:CDS | 45.0% | |
| ! | ATTTTCGTCCCTAATGTGCG+AGG | - | chr8_4:14039442-14039461 | None:intergenic | 45.0% |
| ! | GGCAGCGAATGGAATCTTTT+TGG | - | chr8_4:14039637-14039656 | None:intergenic | 45.0% |
| GTTTCGGCCAAAGCTTTACA+AGG | - | chr8_4:14039694-14039713 | None:intergenic | 45.0% | |
| GTTATCCGCCTCACATGTTT+CGG | - | chr8_4:14039710-14039729 | None:intergenic | 45.0% | |
| ! | ATAACTCAAAGTGGGGGCAT+AGG | - | chr8_4:14040417-14040436 | None:intergenic | 45.0% |
| ! | TGGGAGCATAACTCAAAGTG+GGG | - | chr8_4:14040424-14040443 | None:intergenic | 45.0% |
| TTGAGTTATGCTCCCATTGG+TGG | + | chr8_4:14040428-14040447 | Msa1314930:CDS | 45.0% | |
| AACTCAGTGAACGCTCTATC+TGG | - | chr8_4:14040551-14040570 | None:intergenic | 45.0% | |
| !!! | GCCGCTTTTTTCTCCTCAAT+AGG | - | chr8_4:14040611-14040630 | None:intergenic | 45.0% |
| TTGAGGAGAAAAAAGCGGCT+AGG | + | chr8_4:14040612-14040631 | Msa1314930:CDS | 45.0% | |
| TGAGGAGAAAAAAGCGGCTA+GGG | + | chr8_4:14040613-14040632 | Msa1314930:CDS | 45.0% | |
| GGAGCTTCATTGCAAAGACA+AGG | + | chr8_4:14041030-14041049 | Msa1314930:intron | 45.0% | |
| !! | GCAAAGACAAGGAAAGTACC+GGG | + | chr8_4:14041041-14041060 | Msa1314930:intron | 45.0% |
| GAAAGAGAAGGAGAAGACTC+TGG | + | chr8_4:14041102-14041121 | Msa1314930:CDS | 45.0% | |
| GCTGATTGTTACACTGAGCT+TGG | + | chr8_4:14041150-14041169 | Msa1314930:CDS | 45.0% | |
| TTGGAGACCTTGAGAAAGCA+GGG | + | chr8_4:14041169-14041188 | Msa1314930:CDS | 45.0% | |
| AGTATTGCCCTGCTTTCTCA+AGG | - | chr8_4:14041179-14041198 | None:intergenic | 45.0% | |
| AATGAGAGCAATGGCGGTTG+TGG | + | chr8_4:14038272-14038291 | Msa1314930:exon | 50.0% | |
| GTGAGGACGAGAGATGAAAC+AGG | - | chr8_4:14038307-14038326 | None:intergenic | 50.0% | |
| TGGTGTGGTGTGGTGTGATA+TGG | + | chr8_4:14038918-14038937 | Msa1314930:intron | 50.0% | |
| TTTGAGCAGTGAAGCACGGT+TGG | - | chr8_4:14039082-14039101 | None:intergenic | 50.0% | |
| TGACACTGCCTCGCACATTA+GGG | + | chr8_4:14039431-14039450 | Msa1314930:intron | 50.0% | |
| ! | AGCTTTGGCCGAAACATGTG+AGG | + | chr8_4:14039699-14039718 | Msa1314930:CDS | 50.0% |
| TTTGGCCGAAACATGTGAGG+CGG | + | chr8_4:14039702-14039721 | Msa1314930:CDS | 50.0% | |
| AGGGCTACTGCTAGCAGTAT+AGG | - | chr8_4:14039748-14039767 | None:intergenic | 50.0% | |
| TAGTACCTTACCTCCCACAG+TGG | - | chr8_4:14039779-14039798 | None:intergenic | 50.0% | |
| TTGGTCGCGAGACAAAGGAA+AGG | + | chr8_4:14040320-14040339 | Msa1314930:CDS | 50.0% | |
| ! | GGGAGCATAACTCAAAGTGG+GGG | - | chr8_4:14040423-14040442 | None:intergenic | 50.0% |
| AGTTATGCTCCCATTGGTGG+TGG | + | chr8_4:14040431-14040450 | Msa1314930:CDS | 50.0% | |
| GCTATCCTACCACCACCAAT+GGG | - | chr8_4:14040443-14040462 | None:intergenic | 50.0% | |
| !! | CATTGGTGGTGGTAGGATAG+CGG | + | chr8_4:14040442-14040461 | Msa1314930:CDS | 50.0% |
| GAGGAGAAAAAAGCGGCTAG+GGG | + | chr8_4:14040614-14040633 | Msa1314930:CDS | 50.0% | |
| AAAAAAGCGGCTAGGGGTCT+AGG | + | chr8_4:14040620-14040639 | Msa1314930:CDS | 50.0% | |
| !! | TCTGGGAGCACAGAAGCATT+TGG | + | chr8_4:14041120-14041139 | Msa1314930:CDS | 50.0% |
| !! | CTGGGAGCACAGAAGCATTT+GGG | + | chr8_4:14041121-14041140 | Msa1314930:CDS | 50.0% |
| !! | TGGGAGCACAGAAGCATTTG+GGG | + | chr8_4:14041122-14041141 | Msa1314930:CDS | 50.0% |
| CTTGGAGACCTTGAGAAAGC+AGG | + | chr8_4:14041168-14041187 | Msa1314930:CDS | 50.0% | |
| GTGACACTGCCTCGCACATT+AGG | + | chr8_4:14039430-14039449 | Msa1314930:intron | 55.0% | |
| TCGCAAGAAACGGCAGCGAA+TGG | - | chr8_4:14039648-14039667 | None:intergenic | 55.0% | |
| CTGCTAGCAGTAGCCCTCAT+TGG | + | chr8_4:14039751-14039770 | Msa1314930:CDS | 55.0% | |
| TCCCACAGTGGCTCCAATGA+GGG | - | chr8_4:14039767-14039786 | None:intergenic | 55.0% | |
| !! | TAGGGTTGGTCGCGAGACAA+AGG | + | chr8_4:14040315-14040334 | Msa1314930:intron | 55.0% |
| !! | ATGCTCCCATTGGTGGTGGT+AGG | + | chr8_4:14040435-14040454 | Msa1314930:CDS | 55.0% |
| CGCTATCCTACCACCACCAA+TGG | - | chr8_4:14040444-14040463 | None:intergenic | 55.0% | |
| AGCCCTCATTGGAGCCACTG+TGG | + | chr8_4:14039762-14039781 | Msa1314930:CDS | 60.0% | |
| GCCCTCATTGGAGCCACTGT+GGG | + | chr8_4:14039763-14039782 | Msa1314930:CDS | 60.0% | |
| CTCCCACAGTGGCTCCAATG+AGG | - | chr8_4:14039768-14039787 | None:intergenic | 60.0% | |
| CTCATTGGAGCCACTGTGGG+AGG | + | chr8_4:14039766-14039785 | Msa1314930:CDS | 60.0% | |
| TGGAGCCACTGTGGGAGGTA+AGG | + | chr8_4:14039771-14039790 | Msa1314930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 14038185 | 14041233 | 14038185 | ID=Msa1314930;Name=Msa1314930 |
| chr8_4 | mRNA | 14038185 | 14041233 | 14038185 | ID=Msa1314930-mRNA-1;Parent=Msa1314930;Name=Msa1314930-mRNA-1;_AED=0.14;_eAED=0.14;_QI=88|0.75|0.8|1|1|1|5|0|293 |
| chr8_4 | exon | 14038185 | 14038375 | 14038185 | ID=Msa1314930-mRNA-1:exon:5262;Parent=Msa1314930-mRNA-1 |
| chr8_4 | exon | 14038999 | 14039108 | 14038999 | ID=Msa1314930-mRNA-1:exon:5263;Parent=Msa1314930-mRNA-1 |
| chr8_4 | exon | 14039625 | 14039787 | 14039625 | ID=Msa1314930-mRNA-1:exon:5264;Parent=Msa1314930-mRNA-1 |
| chr8_4 | exon | 14040318 | 14040641 | 14040318 | ID=Msa1314930-mRNA-1:exon:5265;Parent=Msa1314930-mRNA-1 |
| chr8_4 | exon | 14041052 | 14041233 | 14041052 | ID=Msa1314930-mRNA-1:exon:5266;Parent=Msa1314930-mRNA-1 |
| chr8_4 | five_prime_UTR | 14038185 | 14038272 | 14038185 | ID=Msa1314930-mRNA-1:five_prime_utr;Parent=Msa1314930-mRNA-1 |
| chr8_4 | CDS | 14038273 | 14038375 | 14038273 | ID=Msa1314930-mRNA-1:cds;Parent=Msa1314930-mRNA-1 |
| chr8_4 | CDS | 14038999 | 14039108 | 14038999 | ID=Msa1314930-mRNA-1:cds;Parent=Msa1314930-mRNA-1 |
| chr8_4 | CDS | 14039625 | 14039787 | 14039625 | ID=Msa1314930-mRNA-1:cds;Parent=Msa1314930-mRNA-1 |
| chr8_4 | CDS | 14040318 | 14040641 | 14040318 | ID=Msa1314930-mRNA-1:cds;Parent=Msa1314930-mRNA-1 |
| chr8_4 | CDS | 14041052 | 14041233 | 14041052 | ID=Msa1314930-mRNA-1:cds;Parent=Msa1314930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
