Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175310 | G7ZZ33 | 92.097 | 329 | 19 | 1 | 1 | 322 | 1 | 329 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1175310 | Msa1235540 | 0.845873 | 3.094501e-59 | -8.615850e-47 |
| Msa1175310 | Msa1235590 | 0.825905 | 3.631789e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175310 | MtrunA17_Chr8g0345591 | 92.097 | 329 | 19 | 1 | 1 | 322 | 1 | 329 | 0.0 | 619 |
| Msa1175310 | MtrunA17_Chr7g0276511 | 70.930 | 172 | 43 | 2 | 1 | 172 | 9 | 173 | 4.07e-75 | 228 |
| Msa1175310 | MtrunA17_Chr7g0276501 | 67.327 | 101 | 27 | 2 | 228 | 322 | 9 | 109 | 4.76e-43 | 144 |
| Msa1175310 | MtrunA17_Chr8g0392901 | 31.034 | 203 | 103 | 9 | 130 | 312 | 87 | 272 | 3.88e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175310 | AT2G46890.1 | 69.782 | 321 | 95 | 1 | 4 | 322 | 2 | 322 | 2.32e-160 | 451 |
| Msa1175310 | AT1G18180.2 | 32.394 | 213 | 119 | 8 | 103 | 307 | 61 | 256 | 2.40e-13 | 69.7 |
| Msa1175310 | AT1G18180.1 | 32.394 | 213 | 119 | 8 | 103 | 307 | 61 | 256 | 2.77e-13 | 69.7 |
| Msa1175310 | AT1G73650.2 | 33.491 | 212 | 118 | 9 | 103 | 307 | 61 | 256 | 1.73e-11 | 64.3 |
| Msa1175310 | AT1G73650.5 | 33.491 | 212 | 118 | 9 | 103 | 307 | 61 | 256 | 2.32e-11 | 63.9 |
| Msa1175310 | AT1G73650.3 | 33.491 | 212 | 118 | 9 | 103 | 307 | 61 | 256 | 2.55e-11 | 63.9 |
Find 88 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGGATGGACCTTTAT+TGG | 0.173583 | 8_1:+6627285 | Msa1175310:CDS |
| ATTACTTTAGACGTGAAAAT+TGG | 0.244208 | 8_1:+6625416 | Msa1175310:CDS |
| TCAATGTCAATCTTCTCTTC+TGG | 0.286755 | 8_1:+6624881 | Msa1175310:CDS |
| CAACAAGCCTTTGAGTATCT+TGG | 0.301287 | 8_1:+6627044 | Msa1175310:CDS |
| ACTGAGATGGGTCAACAATA+TGG | 0.318813 | 8_1:+6625469 | Msa1175310:CDS |
| AATCTTCTCTTCTGGCTCAT+TGG | 0.322941 | 8_1:+6624889 | Msa1175310:CDS |
| GCCATTGTTGTTTGTTTAAG+TGG | 0.340682 | 8_1:+6627075 | Msa1175310:CDS |
| GACGCTGTGGTGGTGGGGAC+TGG | 0.351750 | 8_1:+6627242 | Msa1175310:CDS |
| ACAGGGATCACTGTCCAATA+TGG | 0.356410 | 8_1:-6625286 | None:intergenic |
| GTGTCAAGTACAGGGATTAC+AGG | 0.360789 | 8_1:-6627177 | None:intergenic |
| ATGGACCTTTATTGGAGCTT+TGG | 0.373438 | 8_1:+6627293 | Msa1175310:CDS |
| TGCTGTTTATGTCTCTCAGC+AGG | 0.384130 | 8_1:+6625519 | Msa1175310:CDS |
| ATTAACCAAAGCTCCAATAA+AGG | 0.385986 | 8_1:-6627298 | None:intergenic |
| CTTTGGCTCAATATAATTTG+TGG | 0.388293 | 8_1:+6625338 | Msa1175310:CDS |
| TGCAGATGATTGATCCATAT+TGG | 0.392989 | 8_1:+6625272 | Msa1175310:intron |
| ACAAAGTGCACAACATATAA+AGG | 0.399002 | 8_1:-6627021 | None:intergenic |
| GTGAGATAGAAGATTATTGA+TGG | 0.408947 | 8_1:-6624763 | None:intergenic |
| TTACTATGCAACACACCCTT+TGG | 0.420431 | 8_1:+6625321 | Msa1175310:CDS |
| TTTGAGTATCTTGGACTTGG+TGG | 0.426220 | 8_1:+6627053 | Msa1175310:CDS |
| TTGGTGAGACGCTGTGGTGG+TGG | 0.429994 | 8_1:+6627235 | Msa1175310:CDS |
| TAGACGTGAAAATTGGCAAT+GGG | 0.432505 | 8_1:+6625423 | Msa1175310:CDS |
| TATGTACCCAGTGACTAGAT+TGG | 0.437217 | 8_1:-6624918 | None:intergenic |
| GCCTTTGAGTATCTTGGACT+TGG | 0.442227 | 8_1:+6627050 | Msa1175310:CDS |
| GTCAAATCCAATCTAGTCAC+TGG | 0.443204 | 8_1:+6624911 | Msa1175310:CDS |
| AAAACAATACAACACTTAGA+AGG | 0.451501 | 8_1:-6627531 | None:intergenic |
| GGGGACTGGTTGTGTTTGCA+TGG | 0.461450 | 8_1:+6627256 | Msa1175310:CDS |
| CCATGTCCATACAGTTGGAT+TGG | 0.462751 | 8_1:-6624815 | None:intergenic |
| TGGTGAGACGCTGTGGTGGT+GGG | 0.471699 | 8_1:+6627236 | Msa1175310:CDS |
| AGCGTCTCACCAAAGTAATT+CGG | 0.476940 | 8_1:-6627225 | None:intergenic |
| AGCCGGCGTCCGAATTACTT+TGG | 0.477007 | 8_1:+6627216 | Msa1175310:CDS |
| TAGAAGATTATTGATGGAAG+AGG | 0.478134 | 8_1:-6624757 | None:intergenic |
| AGCTTATGTGACTAGGCTTG+TGG | 0.481619 | 8_1:+6627332 | Msa1175310:CDS |
| CTGTACTTGACACTGGCCTA+TGG | 0.484981 | 8_1:+6627187 | Msa1175310:CDS |
| TAGTAATGAACAAGCATCAC+AGG | 0.485910 | 8_1:-6625304 | None:intergenic |
| CAATTTCCAATCCAACTGTA+TGG | 0.488679 | 8_1:+6624809 | Msa1175310:CDS |
| CAACTTCAGCGTGGATACCT+TGG | 0.496899 | 8_1:+6627412 | Msa1175310:CDS |
| AGACTGGCGTTTCACTGAGA+TGG | 0.499038 | 8_1:+6625456 | Msa1175310:CDS |
| CACAAATTATATTGAGCCAA+AGG | 0.499071 | 8_1:-6625337 | None:intergenic |
| ACAAATTATATTGAGCCAAA+GGG | 0.499635 | 8_1:-6625336 | None:intergenic |
| TGTGTTTAGCTTATGTGACT+AGG | 0.502231 | 8_1:+6627325 | Msa1175310:CDS |
| GACTGGCGTTTCACTGAGAT+GGG | 0.508793 | 8_1:+6625457 | Msa1175310:CDS |
| CATAGGCCAGTGTCAAGTAC+AGG | 0.512081 | 8_1:-6627186 | None:intergenic |
| AACAACAAGTTCAAAGAACT+TGG | 0.514017 | 8_1:+6627150 | Msa1175310:CDS |
| CCGACACATACATGAACATC+AGG | 0.518801 | 8_1:-6627719 | None:intergenic |
| CATGGAACCTTGGACATGGA+TGG | 0.532497 | 8_1:+6627274 | Msa1175310:CDS |
| GTTGTGTTTGCATGGAACCT+TGG | 0.534053 | 8_1:+6627264 | Msa1175310:CDS |
| AAAATAAAAGTGATTGTATG+TGG | 0.539707 | 8_1:-6627659 | None:intergenic |
| GGTGAGACGCTGTGGTGGTG+GGG | 0.545609 | 8_1:+6627237 | Msa1175310:CDS |
| AATATGGAAAACATTGGTGG+TGG | 0.549525 | 8_1:+6625485 | Msa1175310:CDS |
| GAGCATTGGCAAAGAGAAGA+GGG | 0.556714 | 8_1:-6624849 | None:intergenic |
| AACAATATGGAAAACATTGG+TGG | 0.558953 | 8_1:+6625482 | Msa1175310:CDS |
| AGTGCACAACATATAAAGGA+AGG | 0.575974 | 8_1:-6627017 | None:intergenic |
| GAAGGAAATGACTTAAACCA+AGG | 0.582801 | 8_1:-6627429 | None:intergenic |
| GATTGTTCGACACATCCGAC+AGG | 0.583026 | 8_1:+6627621 | Msa1175310:three_prime_UTR |
| TAGCACCATGTCCATACAGT+TGG | 0.584178 | 8_1:-6624820 | None:intergenic |
| AGAGCATTGGCAAAGAGAAG+AGG | 0.585487 | 8_1:-6624850 | None:intergenic |
| CCAATCCAACTGTATGGACA+TGG | 0.587234 | 8_1:+6624815 | Msa1175310:CDS |
| CTGGCCTATGGTATTACAGC+CGG | 0.588511 | 8_1:+6627199 | Msa1175310:CDS |
| GTAATCCCTGTACTTGACAC+TGG | 0.592824 | 8_1:+6627180 | Msa1175310:CDS |
| AATGGGGTGCTAGAGAAGAC+TGG | 0.595480 | 8_1:+6625440 | Msa1175310:CDS |
| ATATGGAAAACATTGGTGGT+GGG | 0.596512 | 8_1:+6625486 | Msa1175310:CDS |
| ATTGAAGAAGAAGAGAGCAT+TGG | 0.603170 | 8_1:-6624863 | None:intergenic |
| TGGCTCAATATAATTTGTGG+AGG | 0.605658 | 8_1:+6625341 | Msa1175310:CDS |
| GTCAACAATATGGAAAACAT+TGG | 0.608096 | 8_1:+6625479 | Msa1175310:CDS |
| TTGATGAGTGATAGTTGTTG+AGG | 0.609767 | 8_1:-6624789 | None:intergenic |
| ACCAAGTCCAAGATACTCAA+AGG | 0.615189 | 8_1:-6627051 | None:intergenic |
| TTTGCATGGAACCTTGGACA+TGG | 0.616196 | 8_1:+6627270 | Msa1175310:CDS |
| TTAGACGTGAAAATTGGCAA+TGG | 0.620026 | 8_1:+6625422 | Msa1175310:CDS |
| TAAAGGTCCATCCATGTCCA+AGG | 0.620673 | 8_1:-6627281 | None:intergenic |
| GCCACTTAAACAAACAACAA+TGG | 0.625714 | 8_1:-6627076 | None:intergenic |
| TACATGTGTTAATGTCCTGT+CGG | 0.626035 | 8_1:-6627636 | None:intergenic |
| GTGTCGGTGTCTAGACATGT+TGG | 0.629103 | 8_1:+6627735 | Msa1175310:three_prime_UTR |
| TCAAATCCAATCTAGTCACT+GGG | 0.631364 | 8_1:+6624912 | Msa1175310:CDS |
| ATAGGCCAGTGTCAAGTACA+GGG | 0.634937 | 8_1:-6627185 | None:intergenic |
| CACCAAAGTAATTCGGACGC+CGG | 0.635129 | 8_1:-6627218 | None:intergenic |
| CCTGATGTTCATGTATGTGT+CGG | 0.635992 | 8_1:+6627719 | Msa1175310:three_prime_UTR |
| GTGCACAACATATAAAGGAA+GGG | 0.637619 | 8_1:-6627016 | None:intergenic |
| ATTACTTTGGTGAGACGCTG+TGG | 0.656576 | 8_1:+6627229 | Msa1175310:CDS |
| TTATGTGACTAGGCTTGTGG+AGG | 0.657735 | 8_1:+6627335 | Msa1175310:CDS |
| AGTAATGAACAAGCATCACA+GGG | 0.679888 | 8_1:-6625303 | None:intergenic |
| AGACGTGAAAATTGGCAATG+GGG | 0.680331 | 8_1:+6625424 | Msa1175310:CDS |
| ATGATTCTATCAAATAAACA+AGG | 0.681616 | 8_1:-6627554 | None:intergenic |
| ACAATCAAACACAAGTACAT+CGG | 0.681887 | 8_1:-6627604 | None:intergenic |
| GACGCCGGCTGTAATACCAT+AGG | 0.684582 | 8_1:-6627203 | None:intergenic |
| ACTTTGGTGAGACGCTGTGG+TGG | 0.689623 | 8_1:+6627232 | Msa1175310:CDS |
| ATCAGAAGACAACTTCAGCG+TGG | 0.695728 | 8_1:+6627403 | Msa1175310:CDS |
| CATTGGCAAAGAGAAGAGGG+TGG | 0.704400 | 8_1:-6624846 | None:intergenic |
| AGTCACATAAGCTAAACACA+AGG | 0.719129 | 8_1:-6627322 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTAAATTTTCAAATTT+TGG | + | chr8_1:6625205-6625224 | Msa1175310:intron | 10.0% |
| !! | ATAATTGAATGTAATTACAT+CGG | + | chr8_1:6625053-6625072 | Msa1175310:intron | 15.0% |
| !! | ATTTAATCATTTAATCAACT+GGG | - | chr8_1:6625195-6625214 | None:intergenic | 15.0% |
| !! | AATTTAATCATTTAATCAAC+TGG | - | chr8_1:6625196-6625215 | None:intergenic | 15.0% |
| !!! | ATTTTCAAATTTTGGTTTAT+TGG | + | chr8_1:6625213-6625232 | Msa1175310:intron | 15.0% |
| !!! | TTTTGGATAAATAATCAATT+TGG | + | chr8_1:6625603-6625622 | Msa1175310:intron | 15.0% |
| !!! | ATTGAAATTTTACGATTTTA+GGG | + | chr8_1:6625844-6625863 | Msa1175310:intron | 15.0% |
| !!! | TGTTAGTTATTTCTATTTTT+CGG | + | chr8_1:6625966-6625985 | Msa1175310:intron | 15.0% |
| !!! | ATTTTTTTTATAGATATGAC+TGG | - | chr8_1:6626201-6626220 | None:intergenic | 15.0% |
| !!! | ACTTTTTTCTAACAATTAAA+TGG | + | chr8_1:6626583-6626602 | Msa1175310:intron | 15.0% |
| !!! | CAATGATATTAATTTTATCA+AGG | - | chr8_1:6626672-6626691 | None:intergenic | 15.0% |
| !! | AAAATTAATATCATTGTGTT+TGG | + | chr8_1:6626676-6626695 | Msa1175310:intron | 15.0% |
| !!! | ATATTTTTTTTTTTGACAGA+AGG | - | chr8_1:6626792-6626811 | None:intergenic | 15.0% |
| !! | TGATTAATATGATGAAAGAT+TGG | - | chr8_1:6624949-6624968 | None:intergenic | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | - | chr8_1:6625690-6625709 | None:intergenic | 20.0% |
| !! | AAAATAAGTGAATAATGTCT+GGG | + | chr8_1:6625782-6625801 | Msa1175310:intron | 20.0% |
| !!! | GATTGAAATTTTACGATTTT+AGG | + | chr8_1:6625843-6625862 | Msa1175310:intron | 20.0% |
| !! | TTGAATTATATATAATTCGG+AGG | + | chr8_1:6625873-6625892 | Msa1175310:intron | 20.0% |
| !!! | TTGCTTATATTTTATATCAG+AGG | - | chr8_1:6626064-6626083 | None:intergenic | 20.0% |
| !!! | GTCTATTTTTATTATTAGTC+AGG | - | chr8_1:6626454-6626473 | None:intergenic | 20.0% |
| !! | AAATATAGAAGATTAAGAGA+TGG | - | chr8_1:6626769-6626788 | None:intergenic | 20.0% |
| !!! | TTCTTAATTTTAACATCTGA+AGG | - | chr8_1:6627450-6627469 | None:intergenic | 20.0% |
| !! | ATGATTCTATCAAATAAACA+AGG | - | chr8_1:6627557-6627576 | None:intergenic | 20.0% |
| !! | AAAATAAAAGTGATTGTATG+TGG | - | chr8_1:6627662-6627681 | None:intergenic | 20.0% |
| ! | ACAAATTATATTGAGCCAAA+GGG | - | chr8_1:6625339-6625358 | None:intergenic | 25.0% |
| ! | ATTACTTTAGACGTGAAAAT+TGG | + | chr8_1:6625416-6625435 | Msa1175310:CDS | 25.0% |
| !!! | TGTCTGTTTGGTTTAATTTT+TGG | + | chr8_1:6625586-6625605 | Msa1175310:intron | 25.0% |
| ! | GAAAATAAGTGAATAATGTC+TGG | + | chr8_1:6625781-6625800 | Msa1175310:intron | 25.0% |
| ! | TTGATATCAGATTATGAAAG+AGG | + | chr8_1:6625811-6625830 | Msa1175310:intron | 25.0% |
| ! | TGATATCAGATTATGAAAGA+GGG | + | chr8_1:6625812-6625831 | Msa1175310:intron | 25.0% |
| ! | AATAATTGGCACATTCTTAA+AGG | - | chr8_1:6626005-6626024 | None:intergenic | 25.0% |
| ! | TCAAAAAAAATTGTCATGTG+CGG | - | chr8_1:6626031-6626050 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTTGTAACAG+AGG | + | chr8_1:6626146-6626165 | Msa1175310:intron | 25.0% |
| !! | TGCTTATATTTTGTAACAGA+GGG | + | chr8_1:6626147-6626166 | Msa1175310:intron | 25.0% |
| ! | AAAGATGTTTGAACGATTAA+CGG | - | chr8_1:6626331-6626350 | None:intergenic | 25.0% |
| ! | ATCTATATTTCCTTTGTGTT+AGG | + | chr8_1:6626810-6626829 | Msa1175310:intron | 25.0% |
| ! | AAAACAATACAACACTTAGA+AGG | - | chr8_1:6627534-6627553 | None:intergenic | 25.0% |
| TAGAAGATTATTGATGGAAG+AGG | - | chr8_1:6624760-6624779 | None:intergenic | 30.0% | |
| GTGAGATAGAAGATTATTGA+TGG | - | chr8_1:6624766-6624785 | None:intergenic | 30.0% | |
| TGATCCTCTCAAATAATGAT+CGG | - | chr8_1:6625032-6625051 | None:intergenic | 30.0% | |
| !! | TGATTAGAAGTGTCATTACT+AGG | + | chr8_1:6625122-6625141 | Msa1175310:intron | 30.0% |
| !! | GATTAGAAGTGTCATTACTA+GGG | + | chr8_1:6625123-6625142 | Msa1175310:intron | 30.0% |
| CACAAATTATATTGAGCCAA+AGG | - | chr8_1:6625340-6625359 | None:intergenic | 30.0% | |
| ! | CTTTGGCTCAATATAATTTG+TGG | + | chr8_1:6625338-6625357 | Msa1175310:CDS | 30.0% |
| !! | AGATTGTGATTTTGTTGACT+TGG | + | chr8_1:6625368-6625387 | Msa1175310:CDS | 30.0% |
| !!! | GATTGTGATTTTGTTGACTT+GGG | + | chr8_1:6625369-6625388 | Msa1175310:CDS | 30.0% |
| GTCAACAATATGGAAAACAT+TGG | + | chr8_1:6625479-6625498 | Msa1175310:CDS | 30.0% | |
| AACAATATGGAAAACATTGG+TGG | + | chr8_1:6625482-6625501 | Msa1175310:CDS | 30.0% | |
| CAATTCATCAAACATGTTCA+AGG | - | chr8_1:6625568-6625587 | None:intergenic | 30.0% | |
| TGTTTGATGAATTGTCTGTT+TGG | + | chr8_1:6625574-6625593 | Msa1175310:intron | 30.0% | |
| GATGCAGTTGTATAATTTCA+GGG | - | chr8_1:6625630-6625649 | None:intergenic | 30.0% | |
| TGATGCAGTTGTATAATTTC+AGG | - | chr8_1:6625631-6625650 | None:intergenic | 30.0% | |
| AATCAAATCCTTTCCTTTGT+TGG | + | chr8_1:6625707-6625726 | Msa1175310:intron | 30.0% | |
| !! | TGACATTAAGTTGGTAATGT+CGG | + | chr8_1:6625748-6625767 | Msa1175310:intron | 30.0% |
| !!! | ATTTCTATTTTTCGGTGTTG+AGG | + | chr8_1:6625974-6625993 | Msa1175310:intron | 30.0% |
| !!! | TTTCTATTTTTCGGTGTTGA+GGG | + | chr8_1:6625975-6625994 | Msa1175310:intron | 30.0% |
| TGGCGATAAAAACATTTCAT+AGG | + | chr8_1:6626275-6626294 | Msa1175310:intron | 30.0% | |
| ! | TGTGAAGAATTGATTTCTGT+AGG | + | chr8_1:6626615-6626634 | Msa1175310:intron | 30.0% |
| ! | TATTTTGTGAGTTGTTAGTC+AGG | + | chr8_1:6626870-6626889 | Msa1175310:intron | 30.0% |
| AGAGTGAATTTGAATTGCAA+TGG | + | chr8_1:6626893-6626912 | Msa1175310:intron | 30.0% | |
| AATTGCAATGGAAATCAACA+CGG | + | chr8_1:6626905-6626924 | Msa1175310:intron | 30.0% | |
| ! | TTTTCAATGCACAAATGACA+AGG | - | chr8_1:6626953-6626972 | None:intergenic | 30.0% |
| !! | TTTGTGCAGATGTTTTTGAT+TGG | + | chr8_1:6626988-6627007 | Msa1175310:intron | 30.0% |
| ACAAAGTGCACAACATATAA+AGG | - | chr8_1:6627024-6627043 | None:intergenic | 30.0% | |
| AACAACAAGTTCAAAGAACT+TGG | + | chr8_1:6627150-6627169 | Msa1175310:CDS | 30.0% | |
| ATTAACCAAAGCTCCAATAA+AGG | - | chr8_1:6627301-6627320 | None:intergenic | 30.0% | |
| ACAATCAAACACAAGTACAT+CGG | - | chr8_1:6627607-6627626 | None:intergenic | 30.0% | |
| TTGATGAGTGATAGTTGTTG+AGG | - | chr8_1:6624792-6624811 | None:intergenic | 35.0% | |
| CAATTTCCAATCCAACTGTA+TGG | + | chr8_1:6624809-6624828 | Msa1175310:CDS | 35.0% | |
| ! | ATTGAAGAAGAAGAGAGCAT+TGG | - | chr8_1:6624866-6624885 | None:intergenic | 35.0% |
| TCAATGTCAATCTTCTCTTC+TGG | + | chr8_1:6624881-6624900 | Msa1175310:CDS | 35.0% | |
| TCAAATCCAATCTAGTCACT+GGG | + | chr8_1:6624912-6624931 | Msa1175310:CDS | 35.0% | |
| AACACCGATCATTATTTGAG+AGG | + | chr8_1:6625025-6625044 | Msa1175310:intron | 35.0% | |
| TAATCAAAGACGTGTTTGTC+TGG | - | chr8_1:6625108-6625127 | None:intergenic | 35.0% | |
| TGCAGATGATTGATCCATAT+TGG | + | chr8_1:6625272-6625291 | Msa1175310:intron | 35.0% | |
| AGTAATGAACAAGCATCACA+GGG | - | chr8_1:6625306-6625325 | None:intergenic | 35.0% | |
| TAGTAATGAACAAGCATCAC+AGG | - | chr8_1:6625307-6625326 | None:intergenic | 35.0% | |
| ! | TGGCTCAATATAATTTGTGG+AGG | + | chr8_1:6625341-6625360 | Msa1175310:CDS | 35.0% |
| !!! | TGATTTTGTTGACTTGGGTT+TGG | + | chr8_1:6625374-6625393 | Msa1175310:CDS | 35.0% |
| TTAGACGTGAAAATTGGCAA+TGG | + | chr8_1:6625422-6625441 | Msa1175310:CDS | 35.0% | |
| TAGACGTGAAAATTGGCAAT+GGG | + | chr8_1:6625423-6625442 | Msa1175310:CDS | 35.0% | |
| AATATGGAAAACATTGGTGG+TGG | + | chr8_1:6625485-6625504 | Msa1175310:CDS | 35.0% | |
| ! | ATATGGAAAACATTGGTGGT+GGG | + | chr8_1:6625486-6625505 | Msa1175310:CDS | 35.0% |
| TGCAATTTCAAGGATCACTT+TGG | - | chr8_1:6625680-6625699 | None:intergenic | 35.0% | |
| GGACTAAAGTGACATTAAGT+TGG | + | chr8_1:6625739-6625758 | Msa1175310:intron | 35.0% | |
| TAGAATGTAACCACATGTGT+TGG | - | chr8_1:6625945-6625964 | None:intergenic | 35.0% | |
| !!! | TTCTATTTTTCGGTGTTGAG+GGG | + | chr8_1:6625976-6625995 | Msa1175310:intron | 35.0% |
| CTTGTCTCACTGAAATTTGA+TGG | + | chr8_1:6626255-6626274 | Msa1175310:intron | 35.0% | |
| ACGTGTGTGAAATTTGAACT+TGG | - | chr8_1:6626479-6626498 | None:intergenic | 35.0% | |
| !! | TGTTGTGTTAGCGTTGTTTT+TGG | + | chr8_1:6626506-6626525 | Msa1175310:intron | 35.0% |
| !! | GGAATTTCTAGTTTCAGCTA+TGG | + | chr8_1:6626697-6626716 | Msa1175310:intron | 35.0% |
| AAATAACAGGCCTAACACAA+AGG | - | chr8_1:6626823-6626842 | None:intergenic | 35.0% | |
| !!! | TTAGGCCTGTTATTTTTCAG+CGG | + | chr8_1:6626828-6626847 | Msa1175310:intron | 35.0% |
| TGATTCCGCTGAAAAATAAC+AGG | - | chr8_1:6626836-6626855 | None:intergenic | 35.0% | |
| GTGCACAACATATAAAGGAA+GGG | - | chr8_1:6627019-6627038 | None:intergenic | 35.0% | |
| AGTGCACAACATATAAAGGA+AGG | - | chr8_1:6627020-6627039 | None:intergenic | 35.0% | |
| !! | GCCATTGTTGTTTGTTTAAG+TGG | + | chr8_1:6627075-6627094 | Msa1175310:CDS | 35.0% |
| GCCACTTAAACAAACAACAA+TGG | - | chr8_1:6627079-6627098 | None:intergenic | 35.0% | |
| AGTCACATAAGCTAAACACA+AGG | - | chr8_1:6627325-6627344 | None:intergenic | 35.0% | |
| ! | TGTGTTTAGCTTATGTGACT+AGG | + | chr8_1:6627325-6627344 | Msa1175310:CDS | 35.0% |
| GAAGGAAATGACTTAAACCA+AGG | - | chr8_1:6627432-6627451 | None:intergenic | 35.0% | |
| TACATGTGTTAATGTCCTGT+CGG | - | chr8_1:6627639-6627658 | None:intergenic | 35.0% | |
| !! | AATCTTCTCTTCTGGCTCAT+TGG | + | chr8_1:6624889-6624908 | Msa1175310:CDS | 40.0% |
| GTCAAATCCAATCTAGTCAC+TGG | + | chr8_1:6624911-6624930 | Msa1175310:CDS | 40.0% | |
| TATGTACCCAGTGACTAGAT+TGG | - | chr8_1:6624921-6624940 | None:intergenic | 40.0% | |
| TTACTATGCAACACACCCTT+TGG | + | chr8_1:6625321-6625340 | Msa1175310:CDS | 40.0% | |
| AGACGTGAAAATTGGCAATG+GGG | + | chr8_1:6625424-6625443 | Msa1175310:CDS | 40.0% | |
| ACTGAGATGGGTCAACAATA+TGG | + | chr8_1:6625469-6625488 | Msa1175310:CDS | 40.0% | |
| CAAATCCTTTCCTTTGTTGG+TGG | + | chr8_1:6625710-6625729 | Msa1175310:intron | 40.0% | |
| TATCACCACCAACAAAGGAA+AGG | - | chr8_1:6625718-6625737 | None:intergenic | 40.0% | |
| !! | TTCCTTTGTTGGTGGTGATA+TGG | + | chr8_1:6625718-6625737 | Msa1175310:intron | 40.0% |
| TAGTGGGATCTGACATGTTA+CGG | + | chr8_1:6625910-6625929 | Msa1175310:intron | 40.0% | |
| ! | TAACCACATGTGTTGGTGTT+GGG | - | chr8_1:6625938-6625957 | None:intergenic | 40.0% |
| GTCATGTGCGGACAAATAAT+TGG | - | chr8_1:6626019-6626038 | None:intergenic | 40.0% | |
| CAACAAGCCTTTGAGTATCT+TGG | + | chr8_1:6627044-6627063 | Msa1175310:CDS | 40.0% | |
| ACCAAGTCCAAGATACTCAA+AGG | - | chr8_1:6627054-6627073 | None:intergenic | 40.0% | |
| TTTGAGTATCTTGGACTTGG+TGG | + | chr8_1:6627053-6627072 | Msa1175310:CDS | 40.0% | |
| AGCGTCTCACCAAAGTAATT+CGG | - | chr8_1:6627228-6627247 | None:intergenic | 40.0% | |
| ATGGACCTTTATTGGAGCTT+TGG | + | chr8_1:6627293-6627312 | Msa1175310:CDS | 40.0% | |
| CCTGATGTTCATGTATGTGT+CGG | + | chr8_1:6627719-6627738 | Msa1175310:three_prime_UTR | 40.0% | |
| CCATGTCCATACAGTTGGAT+TGG | - | chr8_1:6624818-6624837 | None:intergenic | 45.0% | |
| CCAATCCAACTGTATGGACA+TGG | + | chr8_1:6624815-6624834 | Msa1175310:CDS | 45.0% | |
| TAGCACCATGTCCATACAGT+TGG | - | chr8_1:6624823-6624842 | None:intergenic | 45.0% | |
| !! | GAGCATTGGCAAAGAGAAGA+GGG | - | chr8_1:6624852-6624871 | None:intergenic | 45.0% |
| !! | AGAGCATTGGCAAAGAGAAG+AGG | - | chr8_1:6624853-6624872 | None:intergenic | 45.0% |
| GTCTGTGTCATAGTTGTGTC+AGG | - | chr8_1:6625000-6625019 | None:intergenic | 45.0% | |
| GGTGTGAGAATTGTTGACAC+TGG | + | chr8_1:6625074-6625093 | Msa1175310:intron | 45.0% | |
| ACAGGGATCACTGTCCAATA+TGG | - | chr8_1:6625289-6625308 | None:intergenic | 45.0% | |
| ! | TGCTGTTTATGTCTCTCAGC+AGG | + | chr8_1:6625519-6625538 | Msa1175310:CDS | 45.0% |
| GTTTATGTCTCTCAGCAGGT+TGG | + | chr8_1:6625523-6625542 | Msa1175310:intron | 45.0% | |
| !!! | TCTCTCAGCAGGTTGGTTTT+TGG | + | chr8_1:6625530-6625549 | Msa1175310:intron | 45.0% |
| GTCCATATCACCACCAACAA+AGG | - | chr8_1:6625723-6625742 | None:intergenic | 45.0% | |
| ACATGTCAGATCCCACTAAG+CGG | - | chr8_1:6625908-6625927 | None:intergenic | 45.0% | |
| ! | GTAACCACATGTGTTGGTGT+TGG | - | chr8_1:6625939-6625958 | None:intergenic | 45.0% |
| GCCTTTGAGTATCTTGGACT+TGG | + | chr8_1:6627050-6627069 | Msa1175310:CDS | 45.0% | |
| GTGTCAAGTACAGGGATTAC+AGG | - | chr8_1:6627180-6627199 | None:intergenic | 45.0% | |
| GTAATCCCTGTACTTGACAC+TGG | + | chr8_1:6627180-6627199 | Msa1175310:CDS | 45.0% | |
| ATAGGCCAGTGTCAAGTACA+GGG | - | chr8_1:6627188-6627207 | None:intergenic | 45.0% | |
| ATTACTTTGGTGAGACGCTG+TGG | + | chr8_1:6627229-6627248 | Msa1175310:CDS | 45.0% | |
| GTTGTGTTTGCATGGAACCT+TGG | + | chr8_1:6627264-6627283 | Msa1175310:CDS | 45.0% | |
| TTTGCATGGAACCTTGGACA+TGG | + | chr8_1:6627270-6627289 | Msa1175310:CDS | 45.0% | |
| TAAAGGTCCATCCATGTCCA+AGG | - | chr8_1:6627284-6627303 | None:intergenic | 45.0% | |
| GGACATGGATGGACCTTTAT+TGG | + | chr8_1:6627285-6627304 | Msa1175310:CDS | 45.0% | |
| AGCTTATGTGACTAGGCTTG+TGG | + | chr8_1:6627332-6627351 | Msa1175310:CDS | 45.0% | |
| TTATGTGACTAGGCTTGTGG+AGG | + | chr8_1:6627335-6627354 | Msa1175310:CDS | 45.0% | |
| ATCAGAAGACAACTTCAGCG+TGG | + | chr8_1:6627403-6627422 | Msa1175310:CDS | 45.0% | |
| CCGACACATACATGAACATC+AGG | - | chr8_1:6627722-6627741 | None:intergenic | 45.0% | |
| !!! | ATTTTGAATTATATATAATT+CGG | + | chr8_1:6625870-6625889 | Msa1175310:intron | 5.0% |
| CATTGGCAAAGAGAAGAGGG+TGG | - | chr8_1:6624849-6624868 | None:intergenic | 50.0% | |
| TGTCAGGTGTCTGTGTCAGT+GGG | - | chr8_1:6624984-6625003 | None:intergenic | 50.0% | |
| ! | AATGGGGTGCTAGAGAAGAC+TGG | + | chr8_1:6625440-6625459 | Msa1175310:CDS | 50.0% |
| AGACTGGCGTTTCACTGAGA+TGG | + | chr8_1:6625456-6625475 | Msa1175310:CDS | 50.0% | |
| GACTGGCGTTTCACTGAGAT+GGG | + | chr8_1:6625457-6625476 | Msa1175310:CDS | 50.0% | |
| AGGACTAAGTTCCCGCTTAG+TGG | + | chr8_1:6625893-6625912 | Msa1175310:intron | 50.0% | |
| GGACTAAGTTCCCGCTTAGT+GGG | + | chr8_1:6625894-6625913 | Msa1175310:intron | 50.0% | |
| CATGTCAGATCCCACTAAGC+GGG | - | chr8_1:6625907-6625926 | None:intergenic | 50.0% | |
| TTTGTGTGTGCACTCGCATG+TGG | + | chr8_1:6626385-6626404 | Msa1175310:intron | 50.0% | |
| TTGTGTGTGCACTCGCATGT+GGG | + | chr8_1:6626386-6626405 | Msa1175310:intron | 50.0% | |
| CATAGGCCAGTGTCAAGTAC+AGG | - | chr8_1:6627189-6627208 | None:intergenic | 50.0% | |
| ! | CTGTACTTGACACTGGCCTA+TGG | + | chr8_1:6627187-6627206 | Msa1175310:CDS | 50.0% |
| CTGGCCTATGGTATTACAGC+CGG | + | chr8_1:6627199-6627218 | Msa1175310:CDS | 50.0% | |
| CACCAAAGTAATTCGGACGC+CGG | - | chr8_1:6627221-6627240 | None:intergenic | 50.0% | |
| CATGGAACCTTGGACATGGA+TGG | + | chr8_1:6627274-6627293 | Msa1175310:CDS | 50.0% | |
| CAACTTCAGCGTGGATACCT+TGG | + | chr8_1:6627412-6627431 | Msa1175310:CDS | 50.0% | |
| GATTGTTCGACACATCCGAC+AGG | + | chr8_1:6627621-6627640 | Msa1175310:three_prime_UTR | 50.0% | |
| ! | GTGTCGGTGTCTAGACATGT+TGG | + | chr8_1:6627735-6627754 | Msa1175310:three_prime_UTR | 50.0% |
| GTGTCAGGTGTCTGTGTCAG+TGG | - | chr8_1:6624985-6625004 | None:intergenic | 55.0% | |
| GTGCCCAACACCAACACATG+TGG | + | chr8_1:6625932-6625951 | Msa1175310:intron | 55.0% | |
| ! | GACGCCGGCTGTAATACCAT+AGG | - | chr8_1:6627206-6627225 | None:intergenic | 55.0% |
| AGCCGGCGTCCGAATTACTT+TGG | + | chr8_1:6627216-6627235 | Msa1175310:CDS | 55.0% | |
| ACTTTGGTGAGACGCTGTGG+TGG | + | chr8_1:6627232-6627251 | Msa1175310:CDS | 55.0% | |
| !! | GGGGACTGGTTGTGTTTGCA+TGG | + | chr8_1:6627256-6627275 | Msa1175310:CDS | 55.0% |
| TTGGTGAGACGCTGTGGTGG+TGG | + | chr8_1:6627235-6627254 | Msa1175310:CDS | 60.0% | |
| TGGTGAGACGCTGTGGTGGT+GGG | + | chr8_1:6627236-6627255 | Msa1175310:CDS | 60.0% | |
| ! | GGTGAGACGCTGTGGTGGTG+GGG | + | chr8_1:6627237-6627256 | Msa1175310:CDS | 65.0% |
| !! | GACGCTGTGGTGGTGGGGAC+TGG | + | chr8_1:6627242-6627261 | Msa1175310:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 6624709 | 6627763 | 6624709 | ID=Msa1175310;Name=Msa1175310 |
| chr8_1 | mRNA | 6624709 | 6627763 | 6624709 | ID=Msa1175310-mRNA-1;Parent=Msa1175310;Name=Msa1175310-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|1|0.66|1|1|1|3|287|322 |
| chr8_1 | exon | 6624709 | 6624933 | 6624709 | ID=Msa1175310-mRNA-1:exon:2375;Parent=Msa1175310-mRNA-1 |
| chr8_1 | exon | 6625277 | 6625540 | 6625277 | ID=Msa1175310-mRNA-1:exon:2376;Parent=Msa1175310-mRNA-1 |
| chr8_1 | exon | 6626997 | 6627763 | 6626997 | ID=Msa1175310-mRNA-1:exon:2377;Parent=Msa1175310-mRNA-1 |
| chr8_1 | CDS | 6624709 | 6624933 | 6624709 | ID=Msa1175310-mRNA-1:cds;Parent=Msa1175310-mRNA-1 |
| chr8_1 | CDS | 6625277 | 6625540 | 6625277 | ID=Msa1175310-mRNA-1:cds;Parent=Msa1175310-mRNA-1 |
| chr8_1 | CDS | 6626997 | 6627476 | 6626997 | ID=Msa1175310-mRNA-1:cds;Parent=Msa1175310-mRNA-1 |
| chr8_1 | three_prime_UTR | 6627477 | 6627763 | 6627477 | ID=Msa1175310-mRNA-1:three_prime_utr;Parent=Msa1175310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
