Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235590 | XP_013444504.1 | 94.529 | 329 | 18 | 0 | 1 | 329 | 1 | 329 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235590 | G7ZZ33 | 94.529 | 329 | 18 | 0 | 1 | 329 | 1 | 329 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050320 | Msa1235590 | -0.806755 | 7.050030e-50 | -8.615850e-47 |
| Msa0056220 | Msa1235590 | -0.808678 | 2.752390e-50 | -8.615850e-47 |
| Msa0073270 | Msa1235590 | 0.807194 | 5.693869e-50 | -8.615850e-47 |
| Msa0083200 | Msa1235590 | -0.803022 | 4.249592e-49 | -8.615850e-47 |
| Msa0089540 | Msa1235590 | 0.820595 | 6.313178e-53 | -8.615850e-47 |
| Msa0099090 | Msa1235590 | -0.832541 | 8.915506e-56 | -8.615850e-47 |
| Msa0099350 | Msa1235590 | -0.810229 | 1.279005e-50 | -8.615850e-47 |
| Msa0099430 | Msa1235590 | -0.811106 | 8.264268e-51 | -8.615850e-47 |
| Msa0604890 | Msa1235590 | -0.807637 | 4.585953e-50 | -8.615850e-47 |
| Msa0619300 | Msa1235590 | 0.800994 | 1.109746e-48 | -8.615850e-47 |
| Msa0646180 | Msa1235590 | -0.813468 | 2.521198e-51 | -8.615850e-47 |
| Msa0654400 | Msa1235590 | -0.808772 | 2.628262e-50 | -8.615850e-47 |
| Msa0658120 | Msa1235590 | 0.814913 | 1.209078e-51 | -8.615850e-47 |
| Msa0685390 | Msa1235590 | -0.837918 | 3.914661e-57 | -8.615850e-47 |
| Msa0702970 | Msa1235590 | 0.811674 | 6.220094e-51 | -8.615850e-47 |
| Msa0779830 | Msa1235590 | -0.804388 | 2.213122e-49 | -8.615850e-47 |
| Msa0812610 | Msa1235590 | 0.809774 | 1.602688e-50 | -8.615850e-47 |
| Msa0829770 | Msa1235590 | -0.827109 | 1.875810e-54 | -8.615850e-47 |
| Msa0148000 | Msa1235590 | -0.815272 | 1.006542e-51 | -8.615850e-47 |
| Msa0154720 | Msa1235590 | -0.803401 | 3.547311e-49 | -8.615850e-47 |
| Msa0195030 | Msa1235590 | 0.811144 | 8.109737e-51 | -8.615850e-47 |
| Msa0214800 | Msa1235590 | 0.802131 | 6.487611e-49 | -8.615850e-47 |
| Msa0224200 | Msa1235590 | 0.820843 | 5.535760e-53 | -8.615850e-47 |
| Msa0232660 | Msa1235590 | -0.824847 | 6.466920e-54 | -8.615850e-47 |
| Msa0237180 | Msa1235590 | 0.816215 | 6.204039e-52 | -8.615850e-47 |
| Msa1235540 | Msa1235590 | 0.871156 | 8.469358e-67 | -8.615850e-47 |
| Msa1235590 | Msa1253300 | 0.803180 | 3.942371e-49 | -8.615850e-47 |
| Msa1235590 | Msa1277300 | 0.861857 | 7.636892e-64 | -8.615850e-47 |
| Msa1235590 | Msa1297080 | 0.809015 | 2.331096e-50 | -8.615850e-47 |
| Msa1235590 | Msa1311070 | 0.806971 | 6.346617e-50 | -8.615850e-47 |
| Msa1235590 | Msa1315850 | 0.863780 | 1.950225e-64 | -8.615850e-47 |
| Msa1235590 | Msa1328860 | 0.835759 | 1.391396e-56 | -8.615850e-47 |
| Msa1235590 | Msa1344930 | 0.804996 | 1.651692e-49 | -8.615850e-47 |
| Msa1235590 | Msa1359880 | -0.810446 | 1.148108e-50 | -8.615850e-47 |
| Msa1235590 | Msa1395050 | 0.817661 | 2.937304e-52 | -8.615850e-47 |
| Msa1235590 | Msa1422820 | -0.826038 | 3.377231e-54 | -8.615850e-47 |
| Msa0370350 | Msa1235590 | -0.803119 | 4.057658e-49 | -8.615850e-47 |
| Msa0378620 | Msa1235590 | -0.832518 | 9.031733e-56 | -8.615850e-47 |
| Msa0417850 | Msa1235590 | -0.800733 | 1.254600e-48 | -8.615850e-47 |
| Msa0419420 | Msa1235590 | -0.809039 | 2.303907e-50 | -8.615850e-47 |
| Msa0432260 | Msa1235590 | -0.838314 | 3.096138e-57 | -8.615850e-47 |
| Msa0476730 | Msa1235590 | -0.832604 | 8.600356e-56 | -8.615850e-47 |
| Msa0987670 | Msa1235590 | 0.812747 | 3.628754e-51 | -8.615850e-47 |
| Msa1011140 | Msa1235590 | -0.802127 | 6.499774e-49 | -8.615850e-47 |
| Msa1025200 | Msa1235590 | 0.806854 | 6.718561e-50 | -8.615850e-47 |
| Msa1025220 | Msa1235590 | 0.811772 | 5.924455e-51 | -8.615850e-47 |
| Msa1057940 | Msa1235590 | -0.813410 | 2.595843e-51 | -8.615850e-47 |
| Msa1093190 | Msa1235590 | -0.805076 | 1.589861e-49 | -8.615850e-47 |
| Msa1104020 | Msa1235590 | -0.824319 | 8.610977e-54 | -8.615850e-47 |
| Msa0242720 | Msa1235590 | 0.802036 | 6.788902e-49 | -8.615850e-47 |
| Msa0277320 | Msa1235590 | 0.807098 | 5.967912e-50 | -8.615850e-47 |
| Msa0315660 | Msa1235590 | 0.821393 | 4.135744e-53 | -8.615850e-47 |
| Msa0317300 | Msa1235590 | 0.815431 | 9.279308e-52 | -8.615850e-47 |
| Msa1147600 | Msa1235590 | -0.809679 | 1.679911e-50 | -8.615850e-47 |
| Msa1175310 | Msa1235590 | 0.825905 | 3.631789e-54 | -8.615850e-47 |
| Msa1186670 | Msa1235590 | 0.822458 | 2.343715e-53 | -8.615850e-47 |
| Msa1203090 | Msa1235590 | -0.802948 | 4.402702e-49 | -8.615850e-47 |
| Msa1206030 | Msa1235590 | 0.827425 | 1.575873e-54 | -8.615850e-47 |
| Msa0549550 | Msa1235590 | -0.809683 | 1.676410e-50 | -8.615850e-47 |
| Msa0559440 | Msa1235590 | -0.809269 | 2.056488e-50 | -8.615850e-47 |
| Msa0559640 | Msa1235590 | -0.808425 | 3.117105e-50 | -8.615850e-47 |
| Msa0575960 | Msa1235590 | -0.808076 | 3.699693e-50 | -8.615850e-47 |
| Msa0852890 | Msa1235590 | 0.805369 | 1.380084e-49 | -8.615850e-47 |
| Msa0870220 | Msa1235590 | -0.844805 | 6.020907e-59 | -8.615850e-47 |
| Msa0881240 | Msa1235590 | 0.805403 | 1.357307e-49 | -8.615850e-47 |
| Msa0903460 | Msa1235590 | -0.835636 | 1.495004e-56 | -8.615850e-47 |
| Msa0935930 | Msa1235590 | -0.847760 | 9.433610e-60 | -8.615850e-47 |
| Msa0972930 | Msa1235590 | -0.839851 | 1.237667e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235590 | MtrunA17_Chr8g0345591 | 94.529 | 329 | 18 | 0 | 1 | 329 | 1 | 329 | 0.0 | 642 |
| Msa1235590 | MtrunA17_Chr7g0276511 | 68.715 | 179 | 42 | 1 | 1 | 179 | 9 | 173 | 8.35e-75 | 228 |
| Msa1235590 | MtrunA17_Chr7g0276501 | 67.327 | 101 | 27 | 2 | 235 | 329 | 9 | 109 | 5.40e-43 | 144 |
| Msa1235590 | MtrunA17_Chr8g0392901 | 31.034 | 203 | 103 | 9 | 137 | 319 | 87 | 272 | 3.30e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235590 | AT2G46890.1 | 69.018 | 326 | 96 | 1 | 4 | 329 | 2 | 322 | 5.12e-159 | 447 |
| Msa1235590 | AT1G18180.2 | 32.394 | 213 | 119 | 8 | 110 | 314 | 61 | 256 | 2.21e-13 | 70.1 |
| Msa1235590 | AT1G18180.1 | 32.394 | 213 | 119 | 8 | 110 | 314 | 61 | 256 | 2.94e-13 | 69.7 |
| Msa1235590 | AT1G73650.2 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 1.64e-11 | 64.3 |
| Msa1235590 | AT1G73650.5 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 1.89e-11 | 64.3 |
| Msa1235590 | AT1G73650.3 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 2.58e-11 | 63.9 |
Find 83 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGGATGGACCTTTAT+TGG | 0.173583 | 8_2:-13683594 | Msa1235590:CDS |
| CAACAAACCTTTGAGTATCT+TGG | 0.284159 | 8_2:-13683835 | Msa1235590:CDS |
| TCAATGTCAATCTTCTCTTC+TGG | 0.286755 | 8_2:-13685996 | Msa1235590:CDS |
| ACTGAGATGGGTCAACAATA+TGG | 0.318813 | 8_2:-13685443 | Msa1235590:CDS |
| AATCTTCTCTTCTGGCTCAT+TGG | 0.322941 | 8_2:-13685988 | Msa1235590:CDS |
| GAGACAAAAGAAGGGTTGTT+TGG | 0.326425 | 8_2:+13686078 | None:intergenic |
| GACGCTGTGGTGGTGGGGAC+TGG | 0.351750 | 8_2:-13683637 | Msa1235590:CDS |
| ACAGGGATCACTGTCCAATA+TGG | 0.356410 | 8_2:+13685626 | None:intergenic |
| GTGTCAAGTACAGGGATTAC+AGG | 0.360789 | 8_2:+13683702 | None:intergenic |
| ATGGACCTTTATTGGAGCTT+TGG | 0.373438 | 8_2:-13683586 | Msa1235590:CDS |
| AGACAAAAGAAGGGTTGTTT+GGG | 0.385909 | 8_2:+13686079 | None:intergenic |
| ATTAACCAAAGCTCCAATAA+AGG | 0.385986 | 8_2:+13683581 | None:intergenic |
| CTTTGGCTCAATATAATTTG+TGG | 0.388293 | 8_2:-13685574 | Msa1235590:CDS |
| TGCTGTTTATGTCTCTCAGC+AGG | 0.392466 | 8_2:-13685393 | Msa1235590:intron |
| TGCAGATGATTGATCCATAT+TGG | 0.392989 | 8_2:-13685640 | Msa1235590:intron |
| ACAAAGTGCACAACATATAA+AGG | 0.399002 | 8_2:+13683858 | None:intergenic |
| GCTATTGTTGTCTGTTTAAG+TGG | 0.413288 | 8_2:-13683804 | Msa1235590:CDS |
| TTACTATGCAACACACCCTT+TGG | 0.420431 | 8_2:-13685591 | Msa1235590:CDS |
| TTGGTGAGACGCTGTGGTGG+TGG | 0.429994 | 8_2:-13683644 | Msa1235590:CDS |
| GTGAGATAGAAAATGATTGA+TGG | 0.436527 | 8_2:+13686135 | None:intergenic |
| TATGTACCCAGTGACTAGAT+TGG | 0.437217 | 8_2:+13685959 | None:intergenic |
| GTCAAATCCAATCTAGTCAC+TGG | 0.443204 | 8_2:-13685966 | Msa1235590:CDS |
| TTTGAGTATCTTGGACTTGG+TGG | 0.450705 | 8_2:-13683826 | Msa1235590:CDS |
| GGGGACTGGTTGTGTTTGCA+TGG | 0.461450 | 8_2:-13683623 | Msa1235590:CDS |
| TGGTGAGACGCTGTGGTGGT+GGG | 0.471699 | 8_2:-13683643 | Msa1235590:CDS |
| AGATTGGCGTTTCACTGAGA+TGG | 0.473542 | 8_2:-13685456 | Msa1235590:CDS |
| AGCGTCTCACCAAAGTAATT+CGG | 0.476940 | 8_2:+13683654 | None:intergenic |
| AGCCGGCGTCCGAATTACTT+TGG | 0.477007 | 8_2:-13683663 | Msa1235590:CDS |
| AGCTTATGTGACTAGGCTTG+TGG | 0.481619 | 8_2:-13683547 | Msa1235590:CDS |
| CTGTACTTGACACTGGCCTA+TGG | 0.484981 | 8_2:-13683692 | Msa1235590:CDS |
| TAGTAATGAACAAGCATCAC+AGG | 0.485910 | 8_2:+13685608 | None:intergenic |
| AACAACAAGTTCAAAGAGCT+TGG | 0.488952 | 8_2:-13683729 | Msa1235590:CDS |
| TAGAAAATGATTGATGGAAG+AGG | 0.495802 | 8_2:+13686141 | None:intergenic |
| CAACTTCAGCGTGGATACCT+TGG | 0.496899 | 8_2:-13683467 | Msa1235590:CDS |
| CACAAATTATATTGAGCCAA+AGG | 0.499071 | 8_2:+13685575 | None:intergenic |
| ACAAATTATATTGAGCCAAA+GGG | 0.499635 | 8_2:+13685576 | None:intergenic |
| TGTGTTTAGCTTATGTGACT+AGG | 0.502231 | 8_2:-13683554 | Msa1235590:CDS |
| CATACAGTTGAGACAAAAGA+AGG | 0.505563 | 8_2:+13686069 | None:intergenic |
| CATAGGCCAGTGTCAAGTAC+AGG | 0.512081 | 8_2:+13683693 | None:intergenic |
| ACCTTTGAGTATCTTGGACT+TGG | 0.512692 | 8_2:-13683829 | Msa1235590:CDS |
| AAAAGAAGGGTTGTTTGGGA+TGG | 0.528967 | 8_2:+13686083 | None:intergenic |
| GATTGGCGTTTCACTGAGAT+GGG | 0.529607 | 8_2:-13685455 | Msa1235590:CDS |
| CATGGAACCTTGGACATGGA+TGG | 0.532497 | 8_2:-13683605 | Msa1235590:CDS |
| GTTGTGTTTGCATGGAACCT+TGG | 0.534053 | 8_2:-13683615 | Msa1235590:CDS |
| AATGGGGTGCTAGAGAAGAT+TGG | 0.536653 | 8_2:-13685472 | Msa1235590:CDS |
| AAAATAAAAGTGATTGTATG+TGG | 0.539707 | 8_2:+13683217 | None:intergenic |
| GGTGAGACGCTGTGGTGGTG+GGG | 0.545609 | 8_2:-13683642 | Msa1235590:CDS |
| AAAACAATACAACACTTAGC+AGG | 0.548956 | 8_2:+13683349 | None:intergenic |
| AATATGGAAAACATTGGTGG+TGG | 0.549525 | 8_2:-13685427 | Msa1235590:CDS |
| GAGCATTGGCAAAGAGAAGA+GGG | 0.556714 | 8_2:+13686028 | None:intergenic |
| AACAATATGGAAAACATTGG+TGG | 0.558953 | 8_2:-13685430 | Msa1235590:CDS |
| AGTGCACAACATATAAAGGA+AGG | 0.575974 | 8_2:+13683862 | None:intergenic |
| GAAGGAAATGACTTAAACCA+AGG | 0.582801 | 8_2:+13683450 | None:intergenic |
| GATTGTTCGACACATCCGAC+AGG | 0.583026 | 8_2:-13683255 | Msa1235590:three_prime_UTR |
| AGAGCATTGGCAAAGAGAAG+AGG | 0.585487 | 8_2:+13686027 | None:intergenic |
| CTGGCCTATGGTATTACAGC+CGG | 0.588511 | 8_2:-13683680 | Msa1235590:CDS |
| GTAATCCCTGTACTTGACAC+TGG | 0.592824 | 8_2:-13683699 | Msa1235590:CDS |
| TTGTCTCAACTGTATGGACA+TGG | 0.593248 | 8_2:-13686062 | Msa1235590:CDS |
| ATATGGAAAACATTGGTGGT+GGG | 0.596512 | 8_2:-13685426 | Msa1235590:CDS |
| GTGTCAGTGTCTAGACATGT+TGG | 0.597827 | 8_2:-13683141 | Msa1235590:three_prime_UTR |
| ATTGAAGAAGAAGAGAGCAT+TGG | 0.603170 | 8_2:+13686014 | None:intergenic |
| TTGATGAGTGATAATTGTTG+AGG | 0.603485 | 8_2:+13686109 | None:intergenic |
| TGGCTCAATATAATTTGTGG+AGG | 0.605658 | 8_2:-13685571 | Msa1235590:CDS |
| GTCAACAATATGGAAAACAT+TGG | 0.608096 | 8_2:-13685433 | Msa1235590:CDS |
| ACCAAGTCCAAGATACTCAA+AGG | 0.615173 | 8_2:+13683828 | None:intergenic |
| TTTGCATGGAACCTTGGACA+TGG | 0.616196 | 8_2:-13683609 | Msa1235590:CDS |
| TAAAGGTCCATCCATGTCCA+AGG | 0.620673 | 8_2:+13683598 | None:intergenic |
| TACATGTGTTAATGTCCTGT+CGG | 0.626035 | 8_2:+13683240 | None:intergenic |
| TCAAATCCAATCTAGTCACT+GGG | 0.631364 | 8_2:-13685965 | Msa1235590:intron |
| ATAGGCCAGTGTCAAGTACA+GGG | 0.634937 | 8_2:+13683694 | None:intergenic |
| CACCAAAGTAATTCGGACGC+CGG | 0.635129 | 8_2:+13683661 | None:intergenic |
| GTGCACAACATATAAAGGAA+GGG | 0.637619 | 8_2:+13683863 | None:intergenic |
| ATTACTTTGGTGAGACGCTG+TGG | 0.656576 | 8_2:-13683650 | Msa1235590:CDS |
| TTATGTGACTAGGCTTGTGG+AGG | 0.657735 | 8_2:-13683544 | Msa1235590:CDS |
| AGTAATGAACAAGCATCACA+GGG | 0.679888 | 8_2:+13685609 | None:intergenic |
| ATGATTCTATCAAATAAACA+AGG | 0.681616 | 8_2:+13683326 | None:intergenic |
| ACAATCAAACACAAGTACAT+CGG | 0.681887 | 8_2:+13683272 | None:intergenic |
| GACGCCGGCTGTAATACCAT+AGG | 0.684582 | 8_2:+13683676 | None:intergenic |
| ATACAGTTGAGACAAAAGAA+GGG | 0.686916 | 8_2:+13686070 | None:intergenic |
| ACTTTGGTGAGACGCTGTGG+TGG | 0.689623 | 8_2:-13683647 | Msa1235590:CDS |
| ATCAGAAGACAACTTCAGCG+TGG | 0.695728 | 8_2:-13683476 | Msa1235590:CDS |
| CATTGGCAAAGAGAAGAGGG+TGG | 0.704400 | 8_2:+13686031 | None:intergenic |
| AGTCACATAAGCTAAACACA+AGG | 0.719129 | 8_2:+13683557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAAATTTTACAATTTTA+GGG | - | chr8_2:13684256-13684275 | Msa1235590:intron | 10.0% |
| !!! | ATGATTCAATTTTCAAATTT+TGG | - | chr8_2:13683618-13683637 | Msa1235590:CDS | 15.0% |
| !!! | AATTTTCAAATTTTGGTTTA+TGG | - | chr8_2:13683625-13683644 | Msa1235590:CDS | 15.0% |
| !!! | ATTTTCAAATTTTGGTTTAT+GGG | - | chr8_2:13683626-13683645 | Msa1235590:CDS | 15.0% |
| !!! | TTTTGGATAAATAATCAATT+TGG | - | chr8_2:13684015-13684034 | Msa1235590:intron | 15.0% |
| !!! | GATTGAAATTTTACAATTTT+AGG | - | chr8_2:13684255-13684274 | Msa1235590:intron | 15.0% |
| !! | TTGAATTATATATAATTTGG+AGG | - | chr8_2:13684285-13684304 | Msa1235590:intron | 15.0% |
| !! | TCAAAGAAAATTGATATATT+TGG | - | chr8_2:13684503-13684522 | Msa1235590:intron | 15.0% |
| !!! | ACTTTTTTCTAACAATTAAA+TGG | - | chr8_2:13685032-13685051 | Msa1235590:intron | 15.0% |
| !! | ATAATTGAATGTAATTACGT+TGG | - | chr8_2:13683457-13683476 | Msa1235590:CDS | 20.0% |
| !! | ATTGAATCATTTAATCAACT+TGG | + | chr8_2:13683608-13683627 | None:intergenic | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | + | chr8_2:13684102-13684121 | None:intergenic | 20.0% |
| !! | AAAATAAGTGAGTAATGTTT+GGG | - | chr8_2:13684194-13684213 | Msa1235590:intron | 20.0% |
| !!! | TTGCTTTTATTTTATATCAG+AGG | + | chr8_2:13684476-13684495 | None:intergenic | 20.0% |
| !!! | GATATATTTGGTTCAAAATT+TGG | - | chr8_2:13684515-13684534 | Msa1235590:intron | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | + | chr8_2:13684542-13684561 | None:intergenic | 20.0% |
| !!! | CTGTTTTACTTTTTATAGAT+AGG | + | chr8_2:13684644-13684663 | None:intergenic | 20.0% |
| !!! | GTCTATTTTTATTATTAGTC+AGG | + | chr8_2:13684883-13684902 | None:intergenic | 20.0% |
| !! | AAAATTAATATCGTTGTGTT+TGG | - | chr8_2:13685125-13685144 | Msa1235590:intron | 20.0% |
| !! | AAATATAGAAGATTAAGAGA+TGG | + | chr8_2:13685218-13685237 | None:intergenic | 20.0% |
| !!! | TAGATTTTTTTTTTGACAGA+AGG | + | chr8_2:13685241-13685260 | None:intergenic | 20.0% |
| !!! | TTCTTAATTTTAACATCTGA+AGG | + | chr8_2:13685895-13685914 | None:intergenic | 20.0% |
| !! | ATGATTCTATCAAATAAACA+AGG | + | chr8_2:13686001-13686020 | None:intergenic | 20.0% |
| !! | AAAATAAAAGTGATTGTATG+TGG | + | chr8_2:13686110-13686129 | None:intergenic | 20.0% |
| ! | ACAAATTATATTGAGCCAAA+GGG | + | chr8_2:13683751-13683770 | None:intergenic | 25.0% |
| ! | ATTACTTTAGACGTGAAAAA+TGG | - | chr8_2:13683828-13683847 | Msa1235590:CDS | 25.0% |
| !!! | TGTCTGTTTGGTTTAATTTT+TGG | - | chr8_2:13683998-13684017 | Msa1235590:intron | 25.0% |
| !!! | TGATATTAAGTTGGTAATGT+TGG | - | chr8_2:13684160-13684179 | Msa1235590:intron | 25.0% |
| ! | GAAAATAAGTGAGTAATGTT+TGG | - | chr8_2:13684193-13684212 | Msa1235590:intron | 25.0% |
| ! | TTGATATCAGATTATGAAAG+AGG | - | chr8_2:13684223-13684242 | Msa1235590:intron | 25.0% |
| ! | TGATATCAGATTATGAAAGA+GGG | - | chr8_2:13684224-13684243 | Msa1235590:intron | 25.0% |
| !!! | ATTTATATTTTTCGGTGTTG+AGG | - | chr8_2:13684386-13684405 | Msa1235590:intron | 25.0% |
| !!! | TTTATATTTTTCGGTGTTGA+GGG | - | chr8_2:13684387-13684406 | Msa1235590:intron | 25.0% |
| ! | GATAATTGGCATATTCTTAA+AGG | + | chr8_2:13684417-13684436 | None:intergenic | 25.0% |
| ! | TCAAAAAAAATTGTCATGTG+CGG | + | chr8_2:13684443-13684462 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTTGTAACAG+AGG | - | chr8_2:13684569-13684588 | Msa1235590:intron | 25.0% |
| !! | TGCTTATATTTTGTAACAGA+GGG | - | chr8_2:13684570-13684589 | Msa1235590:intron | 25.0% |
| !!! | TTACTTTTTATAGATAGGAC+TGG | + | chr8_2:13684639-13684658 | None:intergenic | 25.0% |
| ! | ATCTATATTTCCTTTGTGTT+AGG | - | chr8_2:13685256-13685275 | Msa1235590:intron | 25.0% |
| TAGAAAATGATTGATGGAAG+AGG | + | chr8_2:13683186-13683205 | None:intergenic | 30.0% | |
| GTGAGATAGAAAATGATTGA+TGG | + | chr8_2:13683192-13683211 | None:intergenic | 30.0% | |
| TTGATGAGTGATAATTGTTG+AGG | + | chr8_2:13683218-13683237 | None:intergenic | 30.0% | |
| ATACAGTTGAGACAAAAGAA+GGG | + | chr8_2:13683257-13683276 | None:intergenic | 30.0% | |
| AGTGGAATATGATGAAAGAT+TGG | + | chr8_2:13683396-13683415 | None:intergenic | 30.0% | |
| TAATCAAAGATGTGTTTGTC+TGG | + | chr8_2:13683518-13683537 | None:intergenic | 30.0% | |
| ! | ACATCTTTGATTAGAAGTGT+CGG | - | chr8_2:13683525-13683544 | Msa1235590:CDS | 30.0% |
| CACAAATTATATTGAGCCAA+AGG | + | chr8_2:13683752-13683771 | None:intergenic | 30.0% | |
| ! | CTTTGGCTCAATATAATTTG+TGG | - | chr8_2:13683750-13683769 | Msa1235590:CDS | 30.0% |
| !! | AGATTGTGATTTTGTTGACT+TGG | - | chr8_2:13683780-13683799 | Msa1235590:CDS | 30.0% |
| !!! | GATTGTGATTTTGTTGACTT+GGG | - | chr8_2:13683781-13683800 | Msa1235590:CDS | 30.0% |
| GTCAACAATATGGAAAACAT+TGG | - | chr8_2:13683891-13683910 | Msa1235590:intron | 30.0% | |
| AACAATATGGAAAACATTGG+TGG | - | chr8_2:13683894-13683913 | Msa1235590:intron | 30.0% | |
| CAATTCATCAAACATGTTCA+AGG | + | chr8_2:13683980-13683999 | None:intergenic | 30.0% | |
| TGTTTGATGAATTGTCTGTT+TGG | - | chr8_2:13683986-13684005 | Msa1235590:intron | 30.0% | |
| GGACTAAAGTGATATTAAGT+TGG | - | chr8_2:13684151-13684170 | Msa1235590:intron | 30.0% | |
| CATAATGTAACCACATTTGT+TGG | + | chr8_2:13684357-13684376 | None:intergenic | 30.0% | |
| !!! | TTATATTTTTCGGTGTTGAG+GGG | - | chr8_2:13684388-13684407 | Msa1235590:intron | 30.0% |
| TGGCGATAAAAACATTTCAT+AGG | - | chr8_2:13684711-13684730 | Msa1235590:intron | 30.0% | |
| ! | ACATTTCATAGGATTTTGTG+TGG | - | chr8_2:13684722-13684741 | Msa1235590:intron | 30.0% |
| ! | TGTGAAGAATTGATTTCTGT+AGG | - | chr8_2:13685064-13685083 | Msa1235590:intron | 30.0% |
| AAATAACAGACCTAACACAA+AGG | + | chr8_2:13685269-13685288 | None:intergenic | 30.0% | |
| !!! | TTAGGTCTGTTATTTTTCAG+CGG | - | chr8_2:13685274-13685293 | Msa1235590:intron | 30.0% |
| AGAGTGAATTTGAATTGCAA+TGG | - | chr8_2:13685337-13685356 | Msa1235590:intron | 30.0% | |
| AATTGCAATGGAAATCAACA+CGG | - | chr8_2:13685349-13685368 | Msa1235590:intron | 30.0% | |
| ! | TTTTCAATGCACAAATGACA+AGG | + | chr8_2:13685397-13685416 | None:intergenic | 30.0% |
| !! | TTGTTGCAGATGTTTTTGAT+TGG | - | chr8_2:13685433-13685452 | Msa1235590:CDS | 30.0% |
| ACAAAGTGCACAACATATAA+AGG | + | chr8_2:13685469-13685488 | None:intergenic | 30.0% | |
| ATTAACCAAAGCTCCAATAA+AGG | + | chr8_2:13685746-13685765 | None:intergenic | 30.0% | |
| AAAACAATACAACACTTAGC+AGG | + | chr8_2:13685978-13685997 | None:intergenic | 30.0% | |
| ACAATCAAACACAAGTACAT+CGG | + | chr8_2:13686055-13686074 | None:intergenic | 30.0% | |
| AGACAAAAGAAGGGTTGTTT+GGG | + | chr8_2:13683248-13683267 | None:intergenic | 35.0% | |
| CATACAGTTGAGACAAAAGA+AGG | + | chr8_2:13683258-13683277 | None:intergenic | 35.0% | |
| ! | CTTCTTTTGTCTCAACTGTA+TGG | - | chr8_2:13683256-13683275 | Msa1235590:three_prime_UTR | 35.0% |
| ! | ATTGAAGAAGAAGAGAGCAT+TGG | + | chr8_2:13683313-13683332 | None:intergenic | 35.0% |
| TCAATGTCAATCTTCTCTTC+TGG | - | chr8_2:13683328-13683347 | Msa1235590:three_prime_UTR | 35.0% | |
| TCAAATCCAATCTAGTCACT+GGG | - | chr8_2:13683359-13683378 | Msa1235590:three_prime_UTR | 35.0% | |
| TTCATCATATTCCACTGACA+CGG | - | chr8_2:13683400-13683419 | Msa1235590:three_prime_UTR | 35.0% | |
| TGCAGATGATTGATCCATAT+TGG | - | chr8_2:13683684-13683703 | Msa1235590:CDS | 35.0% | |
| AGTAATGAACAAGCATCACA+GGG | + | chr8_2:13683718-13683737 | None:intergenic | 35.0% | |
| TAGTAATGAACAAGCATCAC+AGG | + | chr8_2:13683719-13683738 | None:intergenic | 35.0% | |
| ! | TGGCTCAATATAATTTGTGG+AGG | - | chr8_2:13683753-13683772 | Msa1235590:CDS | 35.0% |
| !!! | TGATTTTGTTGACTTGGGTT+TGG | - | chr8_2:13683786-13683805 | Msa1235590:CDS | 35.0% |
| TTAGACGTGAAAAATGGCAA+TGG | - | chr8_2:13683834-13683853 | Msa1235590:CDS | 35.0% | |
| TAGACGTGAAAAATGGCAAT+GGG | - | chr8_2:13683835-13683854 | Msa1235590:CDS | 35.0% | |
| AATATGGAAAACATTGGTGG+TGG | - | chr8_2:13683897-13683916 | Msa1235590:intron | 35.0% | |
| ! | ATATGGAAAACATTGGTGGT+GGG | - | chr8_2:13683898-13683917 | Msa1235590:intron | 35.0% |
| GATGCAGTTGTACAATTTCA+GGG | + | chr8_2:13684042-13684061 | None:intergenic | 35.0% | |
| TGATGCAGTTGTACAATTTC+AGG | + | chr8_2:13684043-13684062 | None:intergenic | 35.0% | |
| TGCAATTTCAAGGATCACTT+TGG | + | chr8_2:13684092-13684111 | None:intergenic | 35.0% | |
| AATCAAATCCGTTCCTTTGT+TGG | - | chr8_2:13684119-13684138 | Msa1235590:intron | 35.0% | |
| TATCACTACCAACAAAGGAA+CGG | + | chr8_2:13684130-13684149 | None:intergenic | 35.0% | |
| !! | TTCCTTTGTTGGTAGTGATA+TGG | - | chr8_2:13684130-13684149 | Msa1235590:intron | 35.0% |
| CTTGTCTCACTGAAATTTGA+TGG | - | chr8_2:13684691-13684710 | Msa1235590:intron | 35.0% | |
| ACGTGTGTGAAATTTGAACT+TGG | + | chr8_2:13684908-13684927 | None:intergenic | 35.0% | |
| CAAAAACAACGCTAACACAT+AGG | + | chr8_2:13684957-13684976 | None:intergenic | 35.0% | |
| !! | CTATGTGTTAGCGTTGTTTT+TGG | - | chr8_2:13684955-13684974 | Msa1235590:intron | 35.0% |
| !! | GGAATTTCTAGTTTCAGCTA+TGG | - | chr8_2:13685146-13685165 | Msa1235590:intron | 35.0% |
| GTTATTGTGAGTTGTTAGTC+AGG | - | chr8_2:13685314-13685333 | Msa1235590:intron | 35.0% | |
| GTGCACAACATATAAAGGAA+GGG | + | chr8_2:13685464-13685483 | None:intergenic | 35.0% | |
| AGTGCACAACATATAAAGGA+AGG | + | chr8_2:13685465-13685484 | None:intergenic | 35.0% | |
| CAACAAACCTTTGAGTATCT+TGG | - | chr8_2:13685489-13685508 | Msa1235590:CDS | 35.0% | |
| GCTATTGTTGTCTGTTTAAG+TGG | - | chr8_2:13685520-13685539 | Msa1235590:CDS | 35.0% | |
| AACAACAAGTTCAAAGAGCT+TGG | - | chr8_2:13685595-13685614 | Msa1235590:CDS | 35.0% | |
| AGTCACATAAGCTAAACACA+AGG | + | chr8_2:13685770-13685789 | None:intergenic | 35.0% | |
| ! | TGTGTTTAGCTTATGTGACT+AGG | - | chr8_2:13685770-13685789 | Msa1235590:intron | 35.0% |
| GAAGGAAATGACTTAAACCA+AGG | + | chr8_2:13685877-13685896 | None:intergenic | 35.0% | |
| TACATGTGTTAATGTCCTGT+CGG | + | chr8_2:13686087-13686106 | None:intergenic | 35.0% | |
| AAAAGAAGGGTTGTTTGGGA+TGG | + | chr8_2:13683244-13683263 | None:intergenic | 40.0% | |
| GAGACAAAAGAAGGGTTGTT+TGG | + | chr8_2:13683249-13683268 | None:intergenic | 40.0% | |
| TTGTCTCAACTGTATGGACA+TGG | - | chr8_2:13683262-13683281 | Msa1235590:three_prime_UTR | 40.0% | |
| !! | AATCTTCTCTTCTGGCTCAT+TGG | - | chr8_2:13683336-13683355 | Msa1235590:three_prime_UTR | 40.0% |
| GTCAAATCCAATCTAGTCAC+TGG | - | chr8_2:13683358-13683377 | Msa1235590:three_prime_UTR | 40.0% | |
| TATGTACCCAGTGACTAGAT+TGG | + | chr8_2:13683368-13683387 | None:intergenic | 40.0% | |
| TTACTATGCAACACACCCTT+TGG | - | chr8_2:13683733-13683752 | Msa1235590:CDS | 40.0% | |
| AGACGTGAAAAATGGCAATG+GGG | - | chr8_2:13683836-13683855 | Msa1235590:CDS | 40.0% | |
| ACTGAGATGGGTCAACAATA+TGG | - | chr8_2:13683881-13683900 | Msa1235590:CDS | 40.0% | |
| GTCCATATCACTACCAACAA+AGG | + | chr8_2:13684135-13684154 | None:intergenic | 40.0% | |
| CATGTCAAATCCCACTAAGT+GGG | + | chr8_2:13684319-13684338 | None:intergenic | 40.0% | |
| ACATGTCAAATCCCACTAAG+TGG | + | chr8_2:13684320-13684339 | None:intergenic | 40.0% | |
| TAGTGGGATTTGACATGTTC+CGG | - | chr8_2:13684322-13684341 | Msa1235590:intron | 40.0% | |
| ! | GTAACCACATTTGTTGGTGT+TGG | + | chr8_2:13684351-13684370 | None:intergenic | 40.0% |
| TTCACACACGTCAGTCAAAA+TGG | - | chr8_2:13684917-13684936 | Msa1235590:intron | 40.0% | |
| ACCTTTGAGTATCTTGGACT+TGG | - | chr8_2:13685495-13685514 | Msa1235590:CDS | 40.0% | |
| ACCAAGTCCAAGATACTCAA+AGG | + | chr8_2:13685499-13685518 | None:intergenic | 40.0% | |
| TTTGAGTATCTTGGACTTGG+TGG | - | chr8_2:13685498-13685517 | Msa1235590:CDS | 40.0% | |
| AGCGTCTCACCAAAGTAATT+CGG | + | chr8_2:13685673-13685692 | None:intergenic | 40.0% | |
| ATGGACCTTTATTGGAGCTT+TGG | - | chr8_2:13685738-13685757 | Msa1235590:intron | 40.0% | |
| !! | GAGCATTGGCAAAGAGAAGA+GGG | + | chr8_2:13683299-13683318 | None:intergenic | 45.0% |
| !! | AGAGCATTGGCAAAGAGAAG+AGG | + | chr8_2:13683300-13683319 | None:intergenic | 45.0% |
| TGTTAATGTGTCCGTGTCAG+TGG | + | chr8_2:13683414-13683433 | None:intergenic | 45.0% | |
| ACAGGGATCACTGTCCAATA+TGG | + | chr8_2:13683701-13683720 | None:intergenic | 45.0% | |
| ! | AATGGGGTGCTAGAGAAGAT+TGG | - | chr8_2:13683852-13683871 | Msa1235590:CDS | 45.0% |
| AGATTGGCGTTTCACTGAGA+TGG | - | chr8_2:13683868-13683887 | Msa1235590:CDS | 45.0% | |
| GATTGGCGTTTCACTGAGAT+GGG | - | chr8_2:13683869-13683888 | Msa1235590:CDS | 45.0% | |
| ! | TGCTGTTTATGTCTCTCAGC+AGG | - | chr8_2:13683931-13683950 | Msa1235590:intron | 45.0% |
| GTTTATGTCTCTCAGCAGGT+TGG | - | chr8_2:13683935-13683954 | Msa1235590:intron | 45.0% | |
| !!! | TCTCTCAGCAGGTTGGTTTT+TGG | - | chr8_2:13683942-13683961 | Msa1235590:intron | 45.0% |
| AGGACTAAGTTCCCACTTAG+TGG | - | chr8_2:13684305-13684324 | Msa1235590:intron | 45.0% | |
| GGACTAAGTTCCCACTTAGT+GGG | - | chr8_2:13684306-13684325 | Msa1235590:intron | 45.0% | |
| !! | CATTTGTTGGTGTTGGACAC+CGG | + | chr8_2:13684344-13684363 | None:intergenic | 45.0% |
| GTGTCCAACACCAACAAATG+TGG | - | chr8_2:13684344-13684363 | Msa1235590:intron | 45.0% | |
| GTCATGTGCGGACAGATAAT+TGG | + | chr8_2:13684431-13684450 | None:intergenic | 45.0% | |
| CACACGTCAGTCAAAATGGA+CGG | - | chr8_2:13684921-13684940 | Msa1235590:intron | 45.0% | |
| GTGTCAAGTACAGGGATTAC+AGG | + | chr8_2:13685625-13685644 | None:intergenic | 45.0% | |
| GTAATCCCTGTACTTGACAC+TGG | - | chr8_2:13685625-13685644 | Msa1235590:CDS | 45.0% | |
| ATAGGCCAGTGTCAAGTACA+GGG | + | chr8_2:13685633-13685652 | None:intergenic | 45.0% | |
| ATTACTTTGGTGAGACGCTG+TGG | - | chr8_2:13685674-13685693 | Msa1235590:intron | 45.0% | |
| GTTGTGTTTGCATGGAACCT+TGG | - | chr8_2:13685709-13685728 | Msa1235590:intron | 45.0% | |
| TTTGCATGGAACCTTGGACA+TGG | - | chr8_2:13685715-13685734 | Msa1235590:intron | 45.0% | |
| TAAAGGTCCATCCATGTCCA+AGG | + | chr8_2:13685729-13685748 | None:intergenic | 45.0% | |
| GGACATGGATGGACCTTTAT+TGG | - | chr8_2:13685730-13685749 | Msa1235590:intron | 45.0% | |
| AGCTTATGTGACTAGGCTTG+TGG | - | chr8_2:13685777-13685796 | Msa1235590:intron | 45.0% | |
| TTATGTGACTAGGCTTGTGG+AGG | - | chr8_2:13685780-13685799 | Msa1235590:intron | 45.0% | |
| ATCAGAAGACAACTTCAGCG+TGG | - | chr8_2:13685848-13685867 | Msa1235590:intron | 45.0% | |
| GTGTCAGTGTCTAGACATGT+TGG | - | chr8_2:13686183-13686202 | Msa1235590:CDS | 45.0% | |
| !!! | ATTTTGAATTATATATAATT+TGG | - | chr8_2:13684282-13684301 | Msa1235590:intron | 5.0% |
| !!! | TATTAGTTATTTATATTTTT+CGG | - | chr8_2:13684378-13684397 | Msa1235590:intron | 5.0% |
| CATTGGCAAAGAGAAGAGGG+TGG | + | chr8_2:13683296-13683315 | None:intergenic | 50.0% | |
| GTCTGGTGTCTGACACATGT+CGG | + | chr8_2:13683501-13683520 | None:intergenic | 50.0% | |
| CATAGGCCAGTGTCAAGTAC+AGG | + | chr8_2:13685634-13685653 | None:intergenic | 50.0% | |
| ! | CTGTACTTGACACTGGCCTA+TGG | - | chr8_2:13685632-13685651 | Msa1235590:CDS | 50.0% |
| CTGGCCTATGGTATTACAGC+CGG | - | chr8_2:13685644-13685663 | Msa1235590:intron | 50.0% | |
| CACCAAAGTAATTCGGACGC+CGG | + | chr8_2:13685666-13685685 | None:intergenic | 50.0% | |
| CATGGAACCTTGGACATGGA+TGG | - | chr8_2:13685719-13685738 | Msa1235590:intron | 50.0% | |
| CAACTTCAGCGTGGATACCT+TGG | - | chr8_2:13685857-13685876 | Msa1235590:intron | 50.0% | |
| GATTGTTCGACACATCCGAC+AGG | - | chr8_2:13686069-13686088 | Msa1235590:CDS | 50.0% | |
| ! | GACGCCGGCTGTAATACCAT+AGG | + | chr8_2:13685651-13685670 | None:intergenic | 55.0% |
| AGCCGGCGTCCGAATTACTT+TGG | - | chr8_2:13685661-13685680 | Msa1235590:intron | 55.0% | |
| ACTTTGGTGAGACGCTGTGG+TGG | - | chr8_2:13685677-13685696 | Msa1235590:intron | 55.0% | |
| !! | GGGGACTGGTTGTGTTTGCA+TGG | - | chr8_2:13685701-13685720 | Msa1235590:intron | 55.0% |
| TTGGTGAGACGCTGTGGTGG+TGG | - | chr8_2:13685680-13685699 | Msa1235590:intron | 60.0% | |
| TGGTGAGACGCTGTGGTGGT+GGG | - | chr8_2:13685681-13685700 | Msa1235590:intron | 60.0% | |
| ! | GGTGAGACGCTGTGGTGGTG+GGG | - | chr8_2:13685682-13685701 | Msa1235590:intron | 65.0% |
| !! | GACGCTGTGGTGGTGGGGAC+TGG | - | chr8_2:13685687-13685706 | Msa1235590:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 13683135 | 13686211 | 13683135 | ID=Msa1235590;Name=Msa1235590 |
| chr8_2 | mRNA | 13683135 | 13686211 | 13683135 | ID=Msa1235590-mRNA-1;Parent=Msa1235590;Name=Msa1235590-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|1|0.66|1|1|1|3|290|329 |
| chr8_2 | exon | 13683135 | 13683904 | 13683135 | ID=Msa1235590-mRNA-1:exon:5262;Parent=Msa1235590-mRNA-1 |
| chr8_2 | exon | 13685394 | 13685657 | 13685394 | ID=Msa1235590-mRNA-1:exon:5261;Parent=Msa1235590-mRNA-1 |
| chr8_2 | exon | 13685966 | 13686211 | 13685966 | ID=Msa1235590-mRNA-1:exon:5260;Parent=Msa1235590-mRNA-1 |
| chr8_2 | CDS | 13685966 | 13686211 | 13685966 | ID=Msa1235590-mRNA-1:cds;Parent=Msa1235590-mRNA-1 |
| chr8_2 | CDS | 13685394 | 13685657 | 13685394 | ID=Msa1235590-mRNA-1:cds;Parent=Msa1235590-mRNA-1 |
| chr8_2 | CDS | 13683425 | 13683904 | 13683425 | ID=Msa1235590-mRNA-1:cds;Parent=Msa1235590-mRNA-1 |
| chr8_2 | three_prime_UTR | 13683135 | 13683424 | 13683135 | ID=Msa1235590-mRNA-1:three_prime_utr;Parent=Msa1235590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
