Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235540 | XP_013444504.1 | 93.009 | 329 | 23 | 0 | 1 | 329 | 1 | 329 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235540 | G7ZZ33 | 93.009 | 329 | 23 | 0 | 1 | 329 | 1 | 329 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1235540 | Msa1235590 | 0.871156 | 8.469358e-67 | -8.615850e-47 |
| Msa1175310 | Msa1235540 | 0.845873 | 3.094501e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235540 | MtrunA17_Chr8g0345591 | 93.009 | 329 | 23 | 0 | 1 | 329 | 1 | 329 | 0.0 | 632 |
| Msa1235540 | MtrunA17_Chr7g0276511 | 68.156 | 179 | 43 | 1 | 1 | 179 | 9 | 173 | 3.08e-74 | 226 |
| Msa1235540 | MtrunA17_Chr7g0276501 | 67.327 | 101 | 27 | 2 | 235 | 329 | 9 | 109 | 5.58e-43 | 144 |
| Msa1235540 | MtrunA17_Chr8g0392901 | 31.188 | 202 | 104 | 9 | 137 | 319 | 87 | 272 | 2.31e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235540 | AT2G46890.1 | 68.712 | 326 | 97 | 1 | 4 | 329 | 2 | 322 | 2.77e-159 | 448 |
| Msa1235540 | AT1G18180.2 | 32.394 | 213 | 119 | 8 | 110 | 314 | 61 | 256 | 2.55e-13 | 69.7 |
| Msa1235540 | AT1G18180.1 | 32.394 | 213 | 119 | 8 | 110 | 314 | 61 | 256 | 3.42e-13 | 69.7 |
| Msa1235540 | AT1G73650.2 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 2.61e-11 | 63.9 |
| Msa1235540 | AT1G73650.5 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 2.62e-11 | 63.9 |
| Msa1235540 | AT1G73650.3 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 3.38e-11 | 63.5 |
Find 87 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGGATGGACCTTTAT+TGG | 0.173583 | 8_2:+13596310 | Msa1235540:CDS |
| ATTACTTTAGACGTGAAAAT+TGG | 0.244208 | 8_2:+13594440 | Msa1235540:CDS |
| TCAATGTCAATCTTCTCTTC+TGG | 0.286755 | 8_2:+13594100 | Msa1235540:CDS |
| CAACAAACCTTTGAGTATCT+TGG | 0.320620 | 8_2:+13596069 | Msa1235540:CDS |
| AATCTTCTCTTCTGGCTCAT+TGG | 0.322941 | 8_2:+13594108 | Msa1235540:CDS |
| GACGCTGTGGTGGTGGGGAC+TGG | 0.351750 | 8_2:+13596267 | Msa1235540:CDS |
| ACAGGGATCACTGTCCAATA+TGG | 0.356410 | 8_2:-13594310 | None:intergenic |
| GTGTCAAGTACAGGGATTAC+AGG | 0.360789 | 8_2:-13596202 | None:intergenic |
| ATGGACCTTTATTGGAGCTT+TGG | 0.373438 | 8_2:+13596318 | Msa1235540:CDS |
| TGCTGTTTATGTCTCTCAGC+AGG | 0.384130 | 8_2:+13594543 | Msa1235540:CDS |
| ATTAACCAAAGCTCCAATAA+AGG | 0.385986 | 8_2:-13596323 | None:intergenic |
| TGCAGATGATTGATCCATAT+TGG | 0.392989 | 8_2:+13594296 | Msa1235540:intron |
| CTTTGGCTCAATATGATTTG+TGG | 0.396285 | 8_2:+13594362 | Msa1235540:CDS |
| GAGACAAAAGAAGGGTTACT+TGG | 0.403855 | 8_2:-13594018 | None:intergenic |
| AAAAGAAGGGTTACTTGGAT+TGG | 0.408501 | 8_2:-13594013 | None:intergenic |
| GTGAGATAGAAGATTATTGA+TGG | 0.408947 | 8_2:-13593961 | None:intergenic |
| GCTATTGTTGTCTGTTTAAG+TGG | 0.413288 | 8_2:+13596100 | Msa1235540:CDS |
| ACTGAGATGGGTCAACAGTA+TGG | 0.413473 | 8_2:+13594493 | Msa1235540:CDS |
| TTACTATGCAACACACCCTT+TGG | 0.420431 | 8_2:+13594345 | Msa1235540:CDS |
| ACATAGTGCACAACATATAA+AGG | 0.428453 | 8_2:-13596046 | None:intergenic |
| TTGGTGAGACGCTGTGGTGG+TGG | 0.429994 | 8_2:+13596260 | Msa1235540:CDS |
| TAGACGTGAAAATTGGCAAT+GGG | 0.432505 | 8_2:+13594447 | Msa1235540:CDS |
| TATGTACCCAGTGACTAGAT+TGG | 0.437217 | 8_2:-13594137 | None:intergenic |
| GTCAAATCCAATCTAGTCAC+TGG | 0.443204 | 8_2:+13594130 | Msa1235540:CDS |
| TTTGAGTATCTTGGACTTGG+TGG | 0.450705 | 8_2:+13596078 | Msa1235540:CDS |
| GGGGACTGGTTGTGTTTGCA+TGG | 0.461450 | 8_2:+13596281 | Msa1235540:CDS |
| TGGTGAGACGCTGTGGTGGT+GGG | 0.471699 | 8_2:+13596261 | Msa1235540:CDS |
| AGATTGGCGTTTCACTGAGA+TGG | 0.473542 | 8_2:+13594480 | Msa1235540:CDS |
| AGCGTCTCACCAAAGTAATT+CGG | 0.476940 | 8_2:-13596250 | None:intergenic |
| AGCCGGCGTCCGAATTACTT+TGG | 0.477007 | 8_2:+13596241 | Msa1235540:CDS |
| TAGAAGATTATTGATGGAAG+AGG | 0.478134 | 8_2:-13593955 | None:intergenic |
| AGCTTATGTGACTAGGCTTG+TGG | 0.481619 | 8_2:+13596357 | Msa1235540:CDS |
| CTGTACTTGACACTGGCCTA+TGG | 0.484981 | 8_2:+13596212 | Msa1235540:CDS |
| TAGTAATGAACAAGCATCAC+AGG | 0.485910 | 8_2:-13594328 | None:intergenic |
| AACAACAAGTTCAAAGAGCT+TGG | 0.488952 | 8_2:+13596175 | Msa1235540:CDS |
| CAACTTCAGCGTGGATACCT+TGG | 0.496899 | 8_2:+13596437 | Msa1235540:CDS |
| TGTGTTTAGCTTATGTGACT+AGG | 0.502231 | 8_2:+13596350 | Msa1235540:CDS |
| CTGACACATACATGAACATC+AGG | 0.507022 | 8_2:-13596747 | None:intergenic |
| CATAGGCCAGTGTCAAGTAC+AGG | 0.512081 | 8_2:-13596211 | None:intergenic |
| ACCTTTGAGTATCTTGGACT+TGG | 0.512692 | 8_2:+13596075 | Msa1235540:CDS |
| CATACAGTTGAGACAAAAGA+AGG | 0.525663 | 8_2:-13594027 | None:intergenic |
| CACAAATCATATTGAGCCAA+AGG | 0.525947 | 8_2:-13594361 | None:intergenic |
| GATTGGCGTTTCACTGAGAT+GGG | 0.529607 | 8_2:+13594481 | Msa1235540:CDS |
| CATGGAACCTTGGACATGGA+TGG | 0.532497 | 8_2:+13596299 | Msa1235540:CDS |
| GTTGTGTTTGCATGGAACCT+TGG | 0.534053 | 8_2:+13596289 | Msa1235540:CDS |
| AATGGGGTGCTAGAGAAGAT+TGG | 0.536653 | 8_2:+13594464 | Msa1235540:CDS |
| AAAATAAAAGTGATTGTATG+TGG | 0.539707 | 8_2:-13596687 | None:intergenic |
| GGTGAGACGCTGTGGTGGTG+GGG | 0.545609 | 8_2:+13596262 | Msa1235540:CDS |
| AAAACAATACAACACTTAGC+AGG | 0.548956 | 8_2:-13596555 | None:intergenic |
| AGTATGGAAAACATTGGTGG+TGG | 0.552479 | 8_2:+13594509 | Msa1235540:CDS |
| GAGCATTGGCAAAGAGAAGA+GGG | 0.556714 | 8_2:-13594068 | None:intergenic |
| ACAAATCATATTGAGCCAAA+GGG | 0.557331 | 8_2:-13594360 | None:intergenic |
| AGTGCACAACATATAAAGGA+AGG | 0.582794 | 8_2:-13596042 | None:intergenic |
| GAAGGAAATGACTTAAACCA+AGG | 0.582801 | 8_2:-13596454 | None:intergenic |
| GATTGTTCGACACATCCGAC+AGG | 0.583026 | 8_2:+13596649 | Msa1235540:three_prime_UTR |
| AGAGCATTGGCAAAGAGAAG+AGG | 0.585487 | 8_2:-13594069 | None:intergenic |
| CTGGCCTATGGTATTACAGC+CGG | 0.588511 | 8_2:+13596224 | Msa1235540:CDS |
| TGGCTCAATATGATTTGTGG+AGG | 0.590226 | 8_2:+13594365 | Msa1235540:CDS |
| GTAATCCCTGTACTTGACAC+TGG | 0.592824 | 8_2:+13596205 | Msa1235540:CDS |
| GTGTCAGTGTCTAGACATGT+TGG | 0.597827 | 8_2:+13596763 | Msa1235540:three_prime_UTR |
| ATTGAAGAAGAAGAGAGCAT+TGG | 0.603170 | 8_2:-13594082 | None:intergenic |
| TTGTCTCAACTGTATGCACA+TGG | 0.609534 | 8_2:+13594034 | Msa1235540:CDS |
| TTGATGAGTGATAGTTGTTG+AGG | 0.609767 | 8_2:-13593987 | None:intergenic |
| AACAGTATGGAAAACATTGG+TGG | 0.610863 | 8_2:+13594506 | Msa1235540:CDS |
| GTATGGAAAACATTGGTGGT+GGG | 0.614678 | 8_2:+13594510 | Msa1235540:CDS |
| ACCAAGTCCAAGATACTCAA+AGG | 0.615173 | 8_2:-13596076 | None:intergenic |
| TTTGCATGGAACCTTGGACA+TGG | 0.616196 | 8_2:+13596295 | Msa1235540:CDS |
| TTAGACGTGAAAATTGGCAA+TGG | 0.620026 | 8_2:+13594446 | Msa1235540:CDS |
| TAAAGGTCCATCCATGTCCA+AGG | 0.620673 | 8_2:-13596306 | None:intergenic |
| TACATGTGTTAATGTCCTGT+CGG | 0.626035 | 8_2:-13596664 | None:intergenic |
| TCAAATCCAATCTAGTCACT+GGG | 0.631364 | 8_2:+13594131 | Msa1235540:CDS |
| ATAGGCCAGTGTCAAGTACA+GGG | 0.634937 | 8_2:-13596210 | None:intergenic |
| CACCAAAGTAATTCGGACGC+CGG | 0.635129 | 8_2:-13596243 | None:intergenic |
| GTGCACAACATATAAAGGAA+GGG | 0.644439 | 8_2:-13596041 | None:intergenic |
| ATTACTTTGGTGAGACGCTG+TGG | 0.656576 | 8_2:+13596254 | Msa1235540:CDS |
| TTATGTGACTAGGCTTGTGG+AGG | 0.657735 | 8_2:+13596360 | Msa1235540:CDS |
| GTCAACAGTATGGAAAACAT+TGG | 0.662582 | 8_2:+13594503 | Msa1235540:CDS |
| AGTAATGAACAAGCATCACA+GGG | 0.679888 | 8_2:-13594327 | None:intergenic |
| AGACGTGAAAATTGGCAATG+GGG | 0.680331 | 8_2:+13594448 | Msa1235540:CDS |
| ATGATTCTATCAAATAAACA+AGG | 0.681616 | 8_2:-13596578 | None:intergenic |
| ACAATCAAACACAAGTACAT+CGG | 0.681887 | 8_2:-13596632 | None:intergenic |
| GACGCCGGCTGTAATACCAT+AGG | 0.684582 | 8_2:-13596228 | None:intergenic |
| ACTTTGGTGAGACGCTGTGG+TGG | 0.689623 | 8_2:+13596257 | Msa1235540:CDS |
| ATCAGAAGACAACTTCAGCG+TGG | 0.695728 | 8_2:+13596428 | Msa1235540:CDS |
| ATACAGTTGAGACAAAAGAA+GGG | 0.702929 | 8_2:-13594026 | None:intergenic |
| CATTGGCAAAGAGAAGAGGG+TGG | 0.704400 | 8_2:-13594065 | None:intergenic |
| AGTCACATAAGCTAAACACA+AGG | 0.719129 | 8_2:-13596347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTAAATTTTCAAATTT+TGG | + | chr8_2:13594229-13594248 | Msa1235540:intron | 10.0% |
| !! | AATTTAATCATTTAATCAAC+TGG | - | chr8_2:13594189-13594208 | None:intergenic | 15.0% |
| !! | ATTTAATCATTTAATCAACT+GGG | - | chr8_2:13594188-13594207 | None:intergenic | 15.0% |
| !! | AATTTAATCATTTAATCAAC+TGG | - | chr8_2:13594189-13594208 | None:intergenic | 15.0% |
| !!! | ATTTTCAAATTTTGGTTTAT+TGG | + | chr8_2:13594237-13594256 | Msa1235540:intron | 15.0% |
| !!! | ATTGAAATTTTACGATTTTA+GGG | + | chr8_2:13594873-13594892 | Msa1235540:intron | 15.0% |
| !!! | TGTTAGTTATTTCTATTTTT+CGG | + | chr8_2:13594995-13595014 | Msa1235540:intron | 15.0% |
| !!! | ATTTTTTTTATAGATATGAC+TGG | - | chr8_2:13595230-13595249 | None:intergenic | 15.0% |
| !! | AAAATTAATATCATTGTGTT+TGG | + | chr8_2:13595706-13595725 | Msa1235540:intron | 15.0% |
| !!! | ATAGATTTTTTTTTGACAAA+AGG | - | chr8_2:13595822-13595841 | None:intergenic | 15.0% |
| !!! | TGTCTATTTGGTTTAATTTT+TGG | + | chr8_2:13594610-13594629 | Msa1235540:intron | 20.0% |
| !!! | TTTGGAGTAAATAATCAATT+TGG | + | chr8_2:13594628-13594647 | Msa1235540:intron | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | - | chr8_2:13594715-13594734 | None:intergenic | 20.0% |
| !!! | GATTGAAATTTTACGATTTT+AGG | + | chr8_2:13594872-13594891 | Msa1235540:intron | 20.0% |
| !! | TTGAATTATATATAATTCGG+AGG | + | chr8_2:13594902-13594921 | Msa1235540:intron | 20.0% |
| !!! | TTGCTTATATTTTATATCAG+AGG | - | chr8_2:13595093-13595112 | None:intergenic | 20.0% |
| !!! | GTCTATTTTTATTATTAGTC+AGG | - | chr8_2:13595483-13595502 | None:intergenic | 20.0% |
| !! | CTGAATTTCTAACAATTAAA+TGG | + | chr8_2:13595613-13595632 | Msa1235540:intron | 20.0% |
| !! | AAATATAGAAGATTAAGAGA+TGG | - | chr8_2:13595799-13595818 | None:intergenic | 20.0% |
| !!! | TTCTTAATTTTAACATCTGA+AGG | - | chr8_2:13596475-13596494 | None:intergenic | 20.0% |
| !! | ATGATTCTATCAAATAAACA+AGG | - | chr8_2:13596581-13596600 | None:intergenic | 20.0% |
| !! | AAAATAAAAGTGATTGTATG+TGG | - | chr8_2:13596690-13596709 | None:intergenic | 20.0% |
| ! | GGATTAATATGATGAAAGAT+TGG | - | chr8_2:13594168-13594187 | None:intergenic | 25.0% |
| ! | ATTACTTTAGACGTGAAAAT+TGG | + | chr8_2:13594440-13594459 | Msa1235540:CDS | 25.0% |
| ! | TGTTTGATGAATTGTCTATT+TGG | + | chr8_2:13594598-13594617 | Msa1235540:intron | 25.0% |
| ! | TTGATATCAGATTATGAAAG+AGG | + | chr8_2:13594840-13594859 | Msa1235540:intron | 25.0% |
| ! | TGATATCAGATTATGAAAGA+GGG | + | chr8_2:13594841-13594860 | Msa1235540:intron | 25.0% |
| ! | AATAATTGGCACATTCTTAA+AGG | - | chr8_2:13595034-13595053 | None:intergenic | 25.0% |
| ! | TCAAAAAAAATTGTCATGTG+CGG | - | chr8_2:13595060-13595079 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTTGTAACAG+AGG | + | chr8_2:13595175-13595194 | Msa1235540:intron | 25.0% |
| !! | TGCTTATATTTTGTAACAGA+GGG | + | chr8_2:13595176-13595195 | Msa1235540:intron | 25.0% |
| ! | AAAGATGTTTGAACGATTAA+CGG | - | chr8_2:13595360-13595379 | None:intergenic | 25.0% |
| ! | ATCTATATTTCCTTTGTGTT+AGG | + | chr8_2:13595836-13595855 | Msa1235540:intron | 25.0% |
| TAGAAGATTATTGATGGAAG+AGG | - | chr8_2:13593958-13593977 | None:intergenic | 30.0% | |
| GTGAGATAGAAGATTATTGA+TGG | - | chr8_2:13593964-13593983 | None:intergenic | 30.0% | |
| ATACAGTTGAGACAAAAGAA+GGG | - | chr8_2:13594029-13594048 | None:intergenic | 30.0% | |
| ACAAATCATATTGAGCCAAA+GGG | - | chr8_2:13594363-13594382 | None:intergenic | 30.0% | |
| ! | AGATTGTGATTTTGTTGAGT+TGG | + | chr8_2:13594392-13594411 | Msa1235540:CDS | 30.0% |
| ! | GATTGTGATTTTGTTGAGTT+GGG | + | chr8_2:13594393-13594412 | Msa1235540:CDS | 30.0% |
| CAATTCATCAAACATGTTCA+AGG | - | chr8_2:13594592-13594611 | None:intergenic | 30.0% | |
| GATACAGTTCTACAATTTCA+GGG | - | chr8_2:13594655-13594674 | None:intergenic | 30.0% | |
| TGATACAGTTCTACAATTTC+AGG | - | chr8_2:13594656-13594675 | None:intergenic | 30.0% | |
| AATCAAATCCTTTCCTTTGT+TGG | + | chr8_2:13594732-13594751 | Msa1235540:intron | 30.0% | |
| !! | TGACATTAAGTTGGTAATGT+CGG | + | chr8_2:13594773-13594792 | Msa1235540:intron | 30.0% |
| ATAAGTGAATAATGTCTGTC+TGG | + | chr8_2:13594810-13594829 | Msa1235540:intron | 30.0% | |
| TAAGTGAATAATGTCTGTCT+GGG | + | chr8_2:13594811-13594830 | Msa1235540:intron | 30.0% | |
| !!! | ATTTCTATTTTTCGGTGTTG+AGG | + | chr8_2:13595003-13595022 | Msa1235540:intron | 30.0% |
| !!! | TTTCTATTTTTCGGTGTTGA+GGG | + | chr8_2:13595004-13595023 | Msa1235540:intron | 30.0% |
| TGGCGATAAAAACATTTCAT+AGG | + | chr8_2:13595304-13595323 | Msa1235540:intron | 30.0% | |
| ! | TGTGAAGAATTGATTTCTGT+AGG | + | chr8_2:13595645-13595664 | Msa1235540:intron | 30.0% |
| AAATAACAGACCTAACACAA+AGG | - | chr8_2:13595849-13595868 | None:intergenic | 30.0% | |
| !!! | TTAGGTCTGTTATTTTTCAG+CGG | + | chr8_2:13595854-13595873 | Msa1235540:intron | 30.0% |
| AGAGTGAATTTGAATTGCAA+TGG | + | chr8_2:13595917-13595936 | Msa1235540:intron | 30.0% | |
| AATTGCAATGGAAATCAACA+CGG | + | chr8_2:13595929-13595948 | Msa1235540:intron | 30.0% | |
| ! | TTTTCAATGCACAAATGACA+AGG | - | chr8_2:13595977-13595996 | None:intergenic | 30.0% |
| !! | TTGTTGCAGATGTTTTTGAT+TGG | + | chr8_2:13596013-13596032 | Msa1235540:intron | 30.0% |
| ACATAGTGCACAACATATAA+AGG | - | chr8_2:13596049-13596068 | None:intergenic | 30.0% | |
| ATTAACCAAAGCTCCAATAA+AGG | - | chr8_2:13596326-13596345 | None:intergenic | 30.0% | |
| AAAACAATACAACACTTAGC+AGG | - | chr8_2:13596558-13596577 | None:intergenic | 30.0% | |
| ACAATCAAACACAAGTACAT+CGG | - | chr8_2:13596635-13596654 | None:intergenic | 30.0% | |
| TTGATGAGTGATAGTTGTTG+AGG | - | chr8_2:13593990-13594009 | None:intergenic | 35.0% | |
| AAAAGAAGGGTTACTTGGAT+TGG | - | chr8_2:13594016-13594035 | None:intergenic | 35.0% | |
| CATACAGTTGAGACAAAAGA+AGG | - | chr8_2:13594030-13594049 | None:intergenic | 35.0% | |
| ! | ATTGAAGAAGAAGAGAGCAT+TGG | - | chr8_2:13594085-13594104 | None:intergenic | 35.0% |
| TCAATGTCAATCTTCTCTTC+TGG | + | chr8_2:13594100-13594119 | Msa1235540:CDS | 35.0% | |
| TCAAATCCAATCTAGTCACT+GGG | + | chr8_2:13594131-13594150 | Msa1235540:CDS | 35.0% | |
| TGCAGATGATTGATCCATAT+TGG | + | chr8_2:13594296-13594315 | Msa1235540:intron | 35.0% | |
| AGTAATGAACAAGCATCACA+GGG | - | chr8_2:13594330-13594349 | None:intergenic | 35.0% | |
| TAGTAATGAACAAGCATCAC+AGG | - | chr8_2:13594331-13594350 | None:intergenic | 35.0% | |
| CACAAATCATATTGAGCCAA+AGG | - | chr8_2:13594364-13594383 | None:intergenic | 35.0% | |
| ! | CTTTGGCTCAATATGATTTG+TGG | + | chr8_2:13594362-13594381 | Msa1235540:CDS | 35.0% |
| !!! | TGATTTTGTTGAGTTGGGTT+TGG | + | chr8_2:13594398-13594417 | Msa1235540:CDS | 35.0% |
| TTAGACGTGAAAATTGGCAA+TGG | + | chr8_2:13594446-13594465 | Msa1235540:CDS | 35.0% | |
| TAGACGTGAAAATTGGCAAT+GGG | + | chr8_2:13594447-13594466 | Msa1235540:CDS | 35.0% | |
| GTCAACAGTATGGAAAACAT+TGG | + | chr8_2:13594503-13594522 | Msa1235540:CDS | 35.0% | |
| AACAGTATGGAAAACATTGG+TGG | + | chr8_2:13594506-13594525 | Msa1235540:CDS | 35.0% | |
| TGCAATTTCAAGGATCACTT+TGG | - | chr8_2:13594705-13594724 | None:intergenic | 35.0% | |
| GGACTAAAGTGACATTAAGT+TGG | + | chr8_2:13594764-13594783 | Msa1235540:intron | 35.0% | |
| TAGAATGTAACCACATGTGT+TGG | - | chr8_2:13594974-13594993 | None:intergenic | 35.0% | |
| !!! | TTCTATTTTTCGGTGTTGAG+GGG | + | chr8_2:13595005-13595024 | Msa1235540:intron | 35.0% |
| CTTGTCTCACTGAAATTTGA+TGG | + | chr8_2:13595284-13595303 | Msa1235540:intron | 35.0% | |
| ACGTGTGTGAAATTTGAACT+TGG | - | chr8_2:13595508-13595527 | None:intergenic | 35.0% | |
| !! | GGAATTTCTAGTTTCAGCTA+TGG | + | chr8_2:13595727-13595746 | Msa1235540:intron | 35.0% |
| GTTAATGTGAGTTGTTAGTC+AGG | + | chr8_2:13595894-13595913 | Msa1235540:intron | 35.0% | |
| GTGCACAACATATAAAGGAA+GGG | - | chr8_2:13596044-13596063 | None:intergenic | 35.0% | |
| AGTGCACAACATATAAAGGA+AGG | - | chr8_2:13596045-13596064 | None:intergenic | 35.0% | |
| CAACAAACCTTTGAGTATCT+TGG | + | chr8_2:13596069-13596088 | Msa1235540:CDS | 35.0% | |
| GCTATTGTTGTCTGTTTAAG+TGG | + | chr8_2:13596100-13596119 | Msa1235540:CDS | 35.0% | |
| AACAACAAGTTCAAAGAGCT+TGG | + | chr8_2:13596175-13596194 | Msa1235540:CDS | 35.0% | |
| AGTCACATAAGCTAAACACA+AGG | - | chr8_2:13596350-13596369 | None:intergenic | 35.0% | |
| ! | TGTGTTTAGCTTATGTGACT+AGG | + | chr8_2:13596350-13596369 | Msa1235540:CDS | 35.0% |
| GAAGGAAATGACTTAAACCA+AGG | - | chr8_2:13596457-13596476 | None:intergenic | 35.0% | |
| TACATGTGTTAATGTCCTGT+CGG | - | chr8_2:13596667-13596686 | None:intergenic | 35.0% | |
| GAGACAAAAGAAGGGTTACT+TGG | - | chr8_2:13594021-13594040 | None:intergenic | 40.0% | |
| TTGTCTCAACTGTATGCACA+TGG | + | chr8_2:13594034-13594053 | Msa1235540:CDS | 40.0% | |
| !! | AATCTTCTCTTCTGGCTCAT+TGG | + | chr8_2:13594108-13594127 | Msa1235540:CDS | 40.0% |
| GTCAAATCCAATCTAGTCAC+TGG | + | chr8_2:13594130-13594149 | Msa1235540:CDS | 40.0% | |
| TATGTACCCAGTGACTAGAT+TGG | - | chr8_2:13594140-13594159 | None:intergenic | 40.0% | |
| TTACTATGCAACACACCCTT+TGG | + | chr8_2:13594345-13594364 | Msa1235540:CDS | 40.0% | |
| ! | TGGCTCAATATGATTTGTGG+AGG | + | chr8_2:13594365-13594384 | Msa1235540:CDS | 40.0% |
| AGACGTGAAAATTGGCAATG+GGG | + | chr8_2:13594448-13594467 | Msa1235540:CDS | 40.0% | |
| AGTATGGAAAACATTGGTGG+TGG | + | chr8_2:13594509-13594528 | Msa1235540:CDS | 40.0% | |
| ! | GTATGGAAAACATTGGTGGT+GGG | + | chr8_2:13594510-13594529 | Msa1235540:CDS | 40.0% |
| CAAATCCTTTCCTTTGTTGG+TGG | + | chr8_2:13594735-13594754 | Msa1235540:intron | 40.0% | |
| TATCACCACCAACAAAGGAA+AGG | - | chr8_2:13594743-13594762 | None:intergenic | 40.0% | |
| !! | TTCCTTTGTTGGTGGTGATA+TGG | + | chr8_2:13594743-13594762 | Msa1235540:intron | 40.0% |
| TAGTGGGATCTGACATGTTA+CGG | + | chr8_2:13594939-13594958 | Msa1235540:intron | 40.0% | |
| GTCATGTGCGGACAAATAAT+TGG | - | chr8_2:13595048-13595067 | None:intergenic | 40.0% | |
| TTCACACACGTCACTCAAAA+TGG | + | chr8_2:13595517-13595536 | Msa1235540:intron | 40.0% | |
| ACCAAAAACAACGCTAACAC+AGG | - | chr8_2:13595557-13595576 | None:intergenic | 40.0% | |
| ACCTTTGAGTATCTTGGACT+TGG | + | chr8_2:13596075-13596094 | Msa1235540:CDS | 40.0% | |
| ACCAAGTCCAAGATACTCAA+AGG | - | chr8_2:13596079-13596098 | None:intergenic | 40.0% | |
| TTTGAGTATCTTGGACTTGG+TGG | + | chr8_2:13596078-13596097 | Msa1235540:CDS | 40.0% | |
| AGCGTCTCACCAAAGTAATT+CGG | - | chr8_2:13596253-13596272 | None:intergenic | 40.0% | |
| ATGGACCTTTATTGGAGCTT+TGG | + | chr8_2:13596318-13596337 | Msa1235540:CDS | 40.0% | |
| CTGACACATACATGAACATC+AGG | - | chr8_2:13596750-13596769 | None:intergenic | 40.0% | |
| !! | GAGCATTGGCAAAGAGAAGA+GGG | - | chr8_2:13594071-13594090 | None:intergenic | 45.0% |
| !! | AGAGCATTGGCAAAGAGAAG+AGG | - | chr8_2:13594072-13594091 | None:intergenic | 45.0% |
| ACAGGGATCACTGTCCAATA+TGG | - | chr8_2:13594313-13594332 | None:intergenic | 45.0% | |
| ! | AATGGGGTGCTAGAGAAGAT+TGG | + | chr8_2:13594464-13594483 | Msa1235540:CDS | 45.0% |
| AGATTGGCGTTTCACTGAGA+TGG | + | chr8_2:13594480-13594499 | Msa1235540:CDS | 45.0% | |
| GATTGGCGTTTCACTGAGAT+GGG | + | chr8_2:13594481-13594500 | Msa1235540:CDS | 45.0% | |
| ACTGAGATGGGTCAACAGTA+TGG | + | chr8_2:13594493-13594512 | Msa1235540:CDS | 45.0% | |
| ! | TGCTGTTTATGTCTCTCAGC+AGG | + | chr8_2:13594543-13594562 | Msa1235540:CDS | 45.0% |
| GTTTATGTCTCTCAGCAGGT+TGG | + | chr8_2:13594547-13594566 | Msa1235540:intron | 45.0% | |
| !!! | TCTCTCAGCAGGTTGGTTTT+TGG | + | chr8_2:13594554-13594573 | Msa1235540:intron | 45.0% |
| GTCCATATCACCACCAACAA+AGG | - | chr8_2:13594748-13594767 | None:intergenic | 45.0% | |
| ACATGTCAGATCCCACTAAG+CGG | - | chr8_2:13594937-13594956 | None:intergenic | 45.0% | |
| ! | GTAACCACATGTGTTGGTGT+TGG | - | chr8_2:13594968-13594987 | None:intergenic | 45.0% |
| CACACGTCACTCAAAATGGA+CGG | + | chr8_2:13595521-13595540 | Msa1235540:intron | 45.0% | |
| !! | GCCTGTGTTAGCGTTGTTTT+TGG | + | chr8_2:13595553-13595572 | Msa1235540:intron | 45.0% |
| TTCTGTAGGAGAGTTGTCTG+AGG | + | chr8_2:13595659-13595678 | Msa1235540:intron | 45.0% | |
| GTGTCAAGTACAGGGATTAC+AGG | - | chr8_2:13596205-13596224 | None:intergenic | 45.0% | |
| GTAATCCCTGTACTTGACAC+TGG | + | chr8_2:13596205-13596224 | Msa1235540:CDS | 45.0% | |
| ATAGGCCAGTGTCAAGTACA+GGG | - | chr8_2:13596213-13596232 | None:intergenic | 45.0% | |
| ATTACTTTGGTGAGACGCTG+TGG | + | chr8_2:13596254-13596273 | Msa1235540:CDS | 45.0% | |
| GTTGTGTTTGCATGGAACCT+TGG | + | chr8_2:13596289-13596308 | Msa1235540:CDS | 45.0% | |
| TTTGCATGGAACCTTGGACA+TGG | + | chr8_2:13596295-13596314 | Msa1235540:CDS | 45.0% | |
| TAAAGGTCCATCCATGTCCA+AGG | - | chr8_2:13596309-13596328 | None:intergenic | 45.0% | |
| GGACATGGATGGACCTTTAT+TGG | + | chr8_2:13596310-13596329 | Msa1235540:CDS | 45.0% | |
| AGCTTATGTGACTAGGCTTG+TGG | + | chr8_2:13596357-13596376 | Msa1235540:CDS | 45.0% | |
| TTATGTGACTAGGCTTGTGG+AGG | + | chr8_2:13596360-13596379 | Msa1235540:CDS | 45.0% | |
| ATCAGAAGACAACTTCAGCG+TGG | + | chr8_2:13596428-13596447 | Msa1235540:CDS | 45.0% | |
| GTGTCAGTGTCTAGACATGT+TGG | + | chr8_2:13596763-13596782 | Msa1235540:three_prime_UTR | 45.0% | |
| !!! | ATTTTGAATTATATATAATT+CGG | + | chr8_2:13594899-13594918 | Msa1235540:intron | 5.0% |
| CATTGGCAAAGAGAAGAGGG+TGG | - | chr8_2:13594068-13594087 | None:intergenic | 50.0% | |
| AGGACTAAGTTCCCGCTTAG+TGG | + | chr8_2:13594922-13594941 | Msa1235540:intron | 50.0% | |
| GGACTAAGTTCCCGCTTAGT+GGG | + | chr8_2:13594923-13594942 | Msa1235540:intron | 50.0% | |
| CATGTCAGATCCCACTAAGC+GGG | - | chr8_2:13594936-13594955 | None:intergenic | 50.0% | |
| GTGTCCAACACCAACACATG+TGG | + | chr8_2:13594961-13594980 | Msa1235540:intron | 50.0% | |
| CATAGGCCAGTGTCAAGTAC+AGG | - | chr8_2:13596214-13596233 | None:intergenic | 50.0% | |
| ! | CTGTACTTGACACTGGCCTA+TGG | + | chr8_2:13596212-13596231 | Msa1235540:CDS | 50.0% |
| CTGGCCTATGGTATTACAGC+CGG | + | chr8_2:13596224-13596243 | Msa1235540:CDS | 50.0% | |
| CACCAAAGTAATTCGGACGC+CGG | - | chr8_2:13596246-13596265 | None:intergenic | 50.0% | |
| CATGGAACCTTGGACATGGA+TGG | + | chr8_2:13596299-13596318 | Msa1235540:CDS | 50.0% | |
| CAACTTCAGCGTGGATACCT+TGG | + | chr8_2:13596437-13596456 | Msa1235540:CDS | 50.0% | |
| GATTGTTCGACACATCCGAC+AGG | + | chr8_2:13596649-13596668 | Msa1235540:three_prime_UTR | 50.0% | |
| ! | GACGCCGGCTGTAATACCAT+AGG | - | chr8_2:13596231-13596250 | None:intergenic | 55.0% |
| AGCCGGCGTCCGAATTACTT+TGG | + | chr8_2:13596241-13596260 | Msa1235540:CDS | 55.0% | |
| ACTTTGGTGAGACGCTGTGG+TGG | + | chr8_2:13596257-13596276 | Msa1235540:CDS | 55.0% | |
| !! | GGGGACTGGTTGTGTTTGCA+TGG | + | chr8_2:13596281-13596300 | Msa1235540:CDS | 55.0% |
| TTGGTGAGACGCTGTGGTGG+TGG | + | chr8_2:13596260-13596279 | Msa1235540:CDS | 60.0% | |
| TGGTGAGACGCTGTGGTGGT+GGG | + | chr8_2:13596261-13596280 | Msa1235540:CDS | 60.0% | |
| ! | GGTGAGACGCTGTGGTGGTG+GGG | + | chr8_2:13596262-13596281 | Msa1235540:CDS | 65.0% |
| !! | GACGCTGTGGTGGTGGGGAC+TGG | + | chr8_2:13596267-13596286 | Msa1235540:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 13593907 | 13596791 | 13593907 | ID=Msa1235540;Name=Msa1235540 |
| chr8_2 | mRNA | 13593907 | 13596791 | 13593907 | ID=Msa1235540-mRNA-1;Parent=Msa1235540;Name=Msa1235540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.66|1|1|1|3|290|329 |
| chr8_2 | exon | 13593907 | 13594152 | 13593907 | ID=Msa1235540-mRNA-1:exon:5232;Parent=Msa1235540-mRNA-1 |
| chr8_2 | exon | 13594301 | 13594564 | 13594301 | ID=Msa1235540-mRNA-1:exon:5233;Parent=Msa1235540-mRNA-1 |
| chr8_2 | exon | 13596022 | 13596791 | 13596022 | ID=Msa1235540-mRNA-1:exon:5234;Parent=Msa1235540-mRNA-1 |
| chr8_2 | CDS | 13593907 | 13594152 | 13593907 | ID=Msa1235540-mRNA-1:cds;Parent=Msa1235540-mRNA-1 |
| chr8_2 | CDS | 13594301 | 13594564 | 13594301 | ID=Msa1235540-mRNA-1:cds;Parent=Msa1235540-mRNA-1 |
| chr8_2 | CDS | 13596022 | 13596501 | 13596022 | ID=Msa1235540-mRNA-1:cds;Parent=Msa1235540-mRNA-1 |
| chr8_2 | three_prime_UTR | 13596502 | 13596791 | 13596502 | ID=Msa1235540-mRNA-1:three_prime_utr;Parent=Msa1235540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
