AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175500 MtrunA17_Chr8g0345691 88.710 310 29 1 1 304 1 310 0.0 544
Msa1175500 MtrunA17_Chr8g0345691 85.135 222 27 1 300 515 198 419 2.53e-126 375
Msa1175500 MtrunA17_Chr8g0345671 67.492 323 83 6 1 304 1 320 1.21e-138 405
Msa1175500 MtrunA17_Chr8g0345671 52.564 234 60 5 300 515 198 398 7.93e-62 207
Msa1175500 MtrunA17_Chr8g0345721 62.147 177 36 2 1 148 26 200 1.61e-70 224
Msa1175500 MtrunA17_Chr8g0345741 70.290 138 41 0 23 160 2 139 3.01e-66 211
Msa1175500 MtrunA17_Chr8g0345711 61.039 154 59 1 1 153 1 154 5.80e-63 203
Msa1175500 MtrunA17_Chr8g0345731 61.688 154 54 2 10 160 22 173 2.13e-62 201
Msa1175500 MtrunA17_Chr5g0428991 44.206 233 102 8 8 229 21 236 2.17e-52 187
Msa1175500 MtrunA17_Chr3g0128151 53.659 164 67 4 8 165 18 178 4.59e-51 183
Msa1175500 MtrunA17_Chr3g0128111 52.071 169 68 5 15 177 45 206 7.41e-51 174
Msa1175500 MtrunA17_Chr8g0345701 55.629 151 49 5 12 148 7 153 1.71e-46 160
Msa1175500 MtrunA17_Chr6g0481091 51.948 154 65 5 12 159 6 156 1.35e-43 154
Msa1175500 MtrunA17_Chr5g0400461 45.509 167 82 4 12 170 6 171 5.30e-41 150
Msa1175500 MtrunA17_Chr3g0109821 43.956 182 92 4 12 186 6 184 2.59e-40 154
Msa1175500 MtrunA17_Chr4g0054791 46.196 184 83 7 12 185 6 183 7.20e-39 144
Msa1175500 MtrunA17_Chr2g0309891 46.154 156 74 4 12 160 6 158 3.00e-38 143
Msa1175500 MtrunA17_Chr3g0139331 47.059 153 74 4 12 160 11 160 3.82e-37 140
Msa1175500 MtrunA17_Chr5g0398971 33.898 295 167 11 9 295 4 278 7.83e-37 139
Msa1175500 MtrunA17_Chr1g0197361 47.020 151 73 4 15 160 11 159 1.17e-36 143
Msa1175500 MtrunA17_Chr5g0433781 45.806 155 75 4 12 160 6 157 1.34e-36 143
Msa1175500 MtrunA17_Chr4g0018391 45.860 157 77 5 8 159 3 156 3.60e-36 137
Msa1175500 MtrunA17_Chr8g0364791 42.384 151 78 5 15 159 9 156 1.44e-35 138
Msa1175500 MtrunA17_Chr3g0130101 43.046 151 77 5 15 159 10 157 4.83e-35 134
Msa1175500 MtrunA17_Chr8g0384201 43.046 151 77 5 15 159 9 156 1.10e-34 136
Msa1175500 MtrunA17_Chr4g0056541 41.954 174 91 6 8 174 3 173 1.44e-34 133
Msa1175500 MtrunA17_Chr2g0318101 40.120 167 80 4 11 160 14 177 1.70e-34 133
Msa1175500 MtrunA17_Chr1g0147421 43.137 153 81 3 12 160 27 177 1.99e-34 133
Msa1175500 MtrunA17_Chr8g0385991 43.396 159 74 5 9 156 11 164 2.35e-34 129
Msa1175500 MtrunA17_Chr3g0091921 47.134 157 70 8 12 160 16 167 2.54e-34 131
Msa1175500 MtrunA17_Chr2g0316971 50.382 131 61 3 11 140 22 149 3.85e-34 132
Msa1175500 MtrunA17_Chr1g0183741 42.105 152 83 4 12 161 10 158 4.14e-34 130
Msa1175500 MtrunA17_Chr4g0060931 44.586 157 74 7 12 160 17 168 8.10e-34 131
Msa1175500 MtrunA17_Chr6g0484441 43.030 165 83 7 10 168 3 162 1.19e-33 130
Msa1175500 MtrunA17_Chr4g0017921 46.541 159 64 7 12 159 8 156 1.39e-33 130
Msa1175500 MtrunA17_Chr7g0217721 53.125 128 54 5 14 140 21 143 1.49e-33 130
Msa1175500 MtrunA17_Chr2g0326361 44.304 158 75 5 13 160 15 169 1.79e-33 129
Msa1175500 MtrunA17_Chr1g0201021 42.105 190 84 7 5 174 13 196 2.20e-33 133
Msa1175500 MtrunA17_Chr7g0217711 51.181 127 56 4 14 139 21 142 2.34e-33 124
Msa1175500 MtrunA17_Chr4g0047841 44.366 142 75 3 11 151 14 152 2.83e-33 129
Msa1175500 MtrunA17_Chr7g0263931 40.881 159 81 5 11 159 10 165 2.96e-33 129
Msa1175500 MtrunA17_Chr3g0092671 43.709 151 78 3 15 160 8 156 3.30e-33 132
Msa1175500 MtrunA17_Chr4g0042561 45.000 160 69 7 12 159 9 161 3.69e-33 127
Msa1175500 MtrunA17_Chr8g0361731 40.120 167 82 5 15 166 17 180 6.67e-33 129
Msa1175500 MtrunA17_Chr1g0200561 44.444 153 77 5 12 159 19 168 7.24e-33 128
Msa1175500 MtrunA17_Chr2g0312321 40.828 169 86 5 12 173 11 172 1.57e-32 126
Msa1175500 MtrunA17_Chr7g0252971 40.000 170 78 6 11 161 7 171 1.67e-32 127
Msa1175500 MtrunA17_Chr8g0372121 42.484 153 80 5 12 159 6 155 2.82e-32 125
Msa1175500 MtrunA17_Chr7g0261411 42.568 148 80 4 12 157 10 154 2.90e-32 125
Msa1175500 MtrunA17_Chr2g0309331 44.444 153 78 5 12 159 10 160 3.00e-32 126
Msa1175500 MtrunA17_Chr6g0453451 46.405 153 70 6 12 163 20 161 3.06e-32 125
Msa1175500 MtrunA17_Chr7g0214071 40.252 159 85 4 11 165 14 166 3.17e-32 124
Msa1175500 MtrunA17_Chr8g0384721 34.862 218 108 9 12 209 7 210 3.63e-32 124
Msa1175500 MtrunA17_Chr3g0130731 42.500 160 77 5 12 162 7 160 5.08e-32 124
Msa1175500 MtrunA17_Chr5g0417001 38.728 173 88 5 9 166 10 179 6.47e-32 126
Msa1175500 MtrunA17_Chr5g0405211 43.791 153 78 5 12 159 8 157 7.77e-32 125
Msa1175500 MtrunA17_Chr4g0076731 42.581 155 81 5 10 160 52 202 1.25e-31 126
Msa1175500 MtrunA17_Chr6g0453131 41.317 167 79 6 9 160 12 174 2.18e-31 125
Msa1175500 MtrunA17_Chr3g0124761 41.139 158 78 5 11 159 6 157 2.61e-31 122
Msa1175500 MtrunA17_Chr2g0311661 39.412 170 81 6 10 159 18 185 2.65e-31 122
Msa1175500 MtrunA17_Chr6g0461661 44.615 130 68 3 12 140 18 144 3.62e-31 124
Msa1175500 MtrunA17_Chr5g0417791 40.588 170 86 7 12 171 3 167 3.70e-31 121
Msa1175500 MtrunA17_Chr2g0311651 38.674 181 89 6 10 170 19 197 3.70e-31 122
Msa1175500 MtrunA17_Chr3g0144271 46.512 129 66 2 12 139 23 149 4.00e-31 125
Msa1175500 MtrunA17_Chr1g0197351 42.675 157 75 4 15 159 45 198 5.49e-31 125
Msa1175500 MtrunA17_Chr7g0253011 47.407 135 64 5 8 139 14 144 6.19e-31 123
Msa1175500 MtrunA17_Chr4g0026141 39.521 167 82 5 1 156 1 159 7.31e-31 120
Msa1175500 MtrunA17_Chr8g0346001 38.660 194 86 8 11 176 14 202 7.86e-30 121
Msa1175500 MtrunA17_Chr2g0318081 35.784 204 111 8 12 206 16 208 1.10e-29 119
Msa1175500 MtrunA17_Chr2g0321741 43.571 140 73 4 23 161 2 136 1.25e-29 119
Msa1175500 MtrunA17_Chr4g0038751 42.568 148 80 4 15 160 18 162 3.63e-29 117
Msa1175500 MtrunA17_Chr8g0359921 35.321 218 123 9 12 218 14 224 6.57e-29 117
Msa1175500 MtrunA17_Chr3g0131911 37.500 168 86 5 12 165 14 176 1.87e-28 113
Msa1175500 MtrunA17_Chr7g0266701 36.905 168 89 6 9 161 1 166 8.50e-28 112
Msa1175500 MtrunA17_Chr2g0321631 39.744 156 81 5 13 156 5 159 9.17e-28 111
Msa1175500 MtrunA17_Chr5g0442771 39.130 161 79 5 15 159 21 178 2.33e-26 109
Msa1175500 MtrunA17_Chr8g0384351 33.918 171 87 7 12 176 10 160 7.28e-20 87.4
Msa1175500 MtrunA17_Chr4g0050701 28.409 176 99 7 12 173 11 173 7.65e-19 84.7
Msa1175500 MtrunA17_Chr3g0113001 28.374 289 150 12 63 342 13 253 5.44e-18 84.7
Msa1175500 MtrunA17_Chr3g0130321 32.919 161 83 4 12 156 7 158 1.96e-16 78.2
Msa1175500 MtrunA17_Chr7g0251651 30.636 173 99 7 12 174 18 179 3.56e-16 77.0
Msa1175500 MtrunA17_Chr7g0243371 38.095 84 50 2 58 139 6 89 1.42e-14 70.1
Msa1175500 MtrunA17_Chr3g0113031 34.177 158 77 8 80 226 5 146 1.18e-13 71.2
Msa1175500 MtrunA17_Chr7g0251661 30.827 133 78 5 12 139 10 133 1.33e-12 65.9
Msa1175500 MtrunA17_Chr3g0113011 60.417 48 18 1 13 60 20 66 1.65e-11 60.1
Msa1175500 MtrunA17_Chr7g0274971 26.423 246 120 14 18 246 11 212 2.37e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175500 AT4G01550.1 52.809 178 71 4 14 185 6 176 1.96e-54 190
Msa1175500 AT4G35580.3 53.086 162 67 4 8 163 5 163 2.06e-52 186
Msa1175500 AT4G35580.2 53.086 162 67 4 8 163 5 163 2.37e-52 186
Msa1175500 AT4G35580.1 53.086 162 67 4 8 163 5 163 2.39e-52 186
Msa1175500 AT1G33060.1 54.430 158 63 4 8 159 20 174 6.12e-50 182
Msa1175500 AT1G33060.2 54.430 158 63 4 8 159 20 174 6.38e-50 182
Msa1175500 AT3G49530.2 51.235 162 67 5 8 161 9 166 9.01e-50 176
Msa1175500 AT3G49530.1 51.235 162 67 5 8 161 9 166 2.84e-49 176
Msa1175500 AT5G24590.2 51.875 160 69 4 8 161 9 166 1.85e-48 174
Msa1175500 AT4G01520.1 34.351 262 160 5 13 271 5 257 9.11e-45 160
Msa1175500 AT4G01540.4 38.596 228 119 7 14 228 6 225 1.41e-42 156
Msa1175500 AT4G17980.1 48.101 158 73 3 12 161 6 162 1.45e-42 152
Msa1175500 AT4G01540.3 37.885 227 122 6 14 228 6 225 2.46e-42 156
Msa1175500 AT4G01540.2 38.596 228 119 7 14 228 6 225 2.56e-42 156
Msa1175500 AT4G17980.2 48.101 158 73 3 12 161 6 162 3.52e-42 152
Msa1175500 AT4G01540.1 38.596 228 119 7 14 228 6 225 4.65e-42 157
Msa1175500 AT3G17730.1 45.810 179 78 6 12 184 6 171 2.09e-41 149
Msa1175500 AT5G17260.1 49.032 155 69 4 12 159 6 157 1.06e-40 153
Msa1175500 AT3G10490.1 47.368 152 70 4 15 159 30 178 1.99e-40 146
Msa1175500 AT3G10480.1 46.711 152 71 4 15 159 30 178 1.16e-39 149
Msa1175500 AT3G10480.2 47.020 151 71 4 15 159 30 177 1.22e-39 149
Msa1175500 AT3G10490.2 47.368 152 70 4 15 159 30 178 2.13e-39 149
Msa1175500 AT5G46590.1 48.750 160 73 5 12 164 6 163 3.37e-39 144
Msa1175500 AT1G65910.1 49.032 155 70 4 12 160 6 157 9.49e-39 150
Msa1175500 AT3G03200.1 47.742 155 71 4 12 159 6 157 7.04e-38 145
Msa1175500 AT1G02230.1 45.752 153 78 4 13 162 4 154 2.24e-37 141
Msa1175500 AT1G32510.1 45.029 171 73 6 12 166 6 171 1.34e-36 137
Msa1175500 AT5G61430.1 47.134 157 70 7 12 160 16 167 1.99e-36 138
Msa1175500 AT5G46590.2 51.538 130 60 3 12 140 6 133 2.52e-36 136
Msa1175500 AT1G12260.2 42.012 169 90 5 8 171 3 168 5.01e-36 137
Msa1175500 AT1G12260.1 42.012 169 90 5 8 171 3 168 6.95e-36 138
Msa1175500 AT2G24430.2 44.516 155 78 5 12 161 16 167 1.12e-35 135
Msa1175500 AT2G24430.1 44.516 155 78 5 12 161 16 167 1.12e-35 135
Msa1175500 AT2G27300.1 38.579 197 103 7 1 193 11 193 1.99e-35 135
Msa1175500 AT5G62380.2 36.797 231 124 8 8 228 3 221 5.69e-35 134
Msa1175500 AT5G62380.1 36.797 231 124 8 8 228 3 221 5.69e-35 134
Msa1175500 AT5G39610.1 45.513 156 72 6 12 159 20 170 9.55e-35 132
Msa1175500 AT5G39820.1 48.551 138 67 3 10 146 18 152 1.46e-34 133
Msa1175500 AT1G54330.1 47.682 151 73 4 12 159 6 153 1.53e-34 132
Msa1175500 AT5G07680.2 46.203 158 70 7 12 160 3 154 1.96e-34 132
Msa1175500 AT5G07680.1 46.203 158 70 7 12 160 17 168 2.08e-34 132
Msa1175500 AT3G44290.2 42.593 162 78 6 1 161 11 158 2.61e-34 129
Msa1175500 AT1G69490.1 43.038 158 75 6 12 159 9 161 2.66e-34 130
Msa1175500 AT5G04410.1 45.752 153 72 5 15 160 12 160 3.06e-34 136
Msa1175500 AT3G15170.1 45.860 157 74 5 12 160 20 173 3.77e-34 131
Msa1175500 AT3G10500.1 47.368 152 71 5 15 160 12 160 4.92e-34 135
Msa1175500 AT1G33280.1 46.711 152 74 5 12 159 8 156 5.20e-34 130
Msa1175500 AT1G62700.1 43.949 157 80 5 8 159 3 156 5.77e-34 132
Msa1175500 AT1G62700.2 43.949 157 80 5 8 159 3 156 5.77e-34 132
Msa1175500 AT3G44290.1 34.413 247 130 11 1 241 11 231 9.56e-34 130
Msa1175500 AT3G10480.3 39.459 185 69 6 15 159 30 211 1.16e-33 134
Msa1175500 AT3G04060.1 42.949 156 77 6 12 159 20 171 1.74e-33 130
Msa1175500 AT5G53950.1 49.618 131 62 3 10 139 15 142 2.22e-33 130
Msa1175500 AT1G01720.1 42.857 161 76 6 9 159 4 158 2.49e-33 128
Msa1175500 AT3G15510.1 41.011 178 83 6 16 174 21 195 2.51e-33 130
Msa1175500 AT1G76420.1 42.675 157 76 5 12 160 22 172 2.72e-33 129
Msa1175500 AT3G18400.1 43.210 162 80 6 10 164 3 159 3.79e-33 128
Msa1175500 AT3G29035.1 50.388 129 58 5 12 139 24 147 5.04e-33 128
Msa1175500 AT5G66300.1 43.506 154 78 5 12 159 12 162 5.16e-33 127
Msa1175500 AT1G26870.1 42.857 161 74 5 15 160 19 176 8.24e-33 130
Msa1175500 AT5G08790.1 41.875 160 76 6 11 159 6 159 1.18e-32 126
Msa1175500 AT1G71930.2 43.137 153 79 5 12 159 9 158 1.44e-32 127
Msa1175500 AT1G71930.1 43.137 153 79 5 12 159 9 158 1.44e-32 127
Msa1175500 AT1G79580.3 46.053 152 76 5 12 159 17 166 1.55e-32 128
Msa1175500 AT1G79580.5 46.053 152 76 5 12 159 17 166 1.55e-32 128
Msa1175500 AT1G79580.4 46.053 152 76 5 12 159 17 166 1.55e-32 128
Msa1175500 AT1G79580.2 46.053 152 76 5 12 159 17 166 1.55e-32 128
Msa1175500 AT1G79580.1 46.053 152 76 5 12 159 17 166 1.55e-32 128
Msa1175500 AT1G34190.1 46.753 154 69 5 15 160 19 167 3.14e-32 130
Msa1175500 AT1G61110.1 41.520 171 78 6 7 159 11 177 3.39e-32 126
Msa1175500 AT3G04070.2 41.212 165 78 5 12 160 10 171 3.60e-32 126
Msa1175500 AT3G15500.1 35.780 218 121 9 12 220 14 221 3.88e-32 125
Msa1175500 AT4G10350.1 43.195 169 85 6 12 172 9 174 4.62e-32 126
Msa1175500 AT5G22290.1 33.333 249 142 9 2 247 19 246 4.81e-32 126
Msa1175500 AT4G27410.2 35.714 210 110 9 12 210 14 209 1.24e-31 124
Msa1175500 AT5G18270.2 42.308 156 78 5 12 159 21 172 1.61e-31 124
Msa1175500 AT2G18060.3 43.137 153 79 5 12 159 9 158 1.96e-31 125
Msa1175500 AT2G18060.1 43.137 153 79 5 12 159 9 158 1.96e-31 125
Msa1175500 AT2G02450.1 42.953 149 77 5 15 159 54 198 1.97e-31 125
Msa1175500 AT1G34180.3 46.053 152 73 4 15 160 19 167 2.00e-31 126
Msa1175500 AT1G56010.2 41.401 157 79 4 12 159 19 171 2.37e-31 124
Msa1175500 AT2G02450.2 42.953 149 77 5 15 159 54 198 2.49e-31 125
Msa1175500 AT2G17040.1 40.606 165 87 5 15 171 9 170 3.01e-31 122
Msa1175500 AT4G36160.1 42.484 153 80 5 12 159 10 159 5.38e-31 124
Msa1175500 AT4G36160.3 42.484 153 80 5 12 159 10 159 5.38e-31 124
Msa1175500 AT5G09330.5 43.709 151 76 4 15 159 9 156 5.57e-31 125
Msa1175500 AT5G09330.2 43.709 151 76 4 15 159 9 156 5.57e-31 125
Msa1175500 AT5G09330.4 43.709 151 76 4 15 159 9 156 5.57e-31 125
Msa1175500 AT5G09330.3 43.709 151 76 4 15 159 9 156 5.57e-31 125
Msa1175500 AT5G09330.1 43.709 151 76 4 15 159 9 156 5.57e-31 125
Msa1175500 AT4G36160.2 42.484 153 80 5 12 159 14 163 5.98e-31 124
Msa1175500 AT1G34180.1 45.395 152 74 4 15 160 19 167 5.99e-31 126
Msa1175500 AT5G18270.1 41.667 156 79 5 12 159 21 172 6.56e-31 123
Msa1175500 AT1G52890.1 38.462 182 97 6 6 179 8 182 1.10e-30 122
Msa1175500 AT3G61910.1 40.237 169 78 6 11 159 10 175 1.89e-30 121
Msa1175500 AT5G13180.1 39.610 154 82 4 11 159 13 160 1.94e-30 119
Msa1175500 AT1G02250.1 42.857 154 83 4 13 163 4 155 2.22e-30 122
Msa1175500 AT3G04070.1 45.455 132 65 4 12 139 10 138 3.58e-30 121
Msa1175500 AT5G22380.1 41.139 158 81 5 10 156 3 159 4.81e-30 117
Msa1175500 AT5G64060.1 41.558 154 75 5 15 159 9 156 5.61e-30 120
Msa1175500 AT5G63790.1 38.251 183 85 7 11 171 49 225 7.60e-30 119
Msa1175500 AT5G63790.2 38.251 183 85 7 11 171 59 235 8.47e-30 119
Msa1175500 AT4G27410.3 33.482 224 113 9 12 210 14 226 2.23e-29 118
Msa1175500 AT5G04395.1 41.549 142 69 4 12 140 28 168 2.37e-29 114
Msa1175500 AT1G01010.1 42.857 168 79 5 14 173 5 163 2.42e-29 120
Msa1175500 AT2G43000.1 35.385 195 107 7 15 195 21 210 2.65e-29 117
Msa1175500 AT1G77450.1 31.739 230 121 6 11 231 9 211 5.52e-29 115
Msa1175500 AT2G33480.2 40.645 155 80 5 11 161 14 160 6.08e-29 115
Msa1175500 AT3G12910.1 34.715 193 103 5 15 187 24 213 9.71e-29 116
Msa1175500 AT2G46770.1 31.579 285 154 13 12 266 16 289 1.01e-28 117
Msa1175500 AT2G33480.1 40.645 155 78 5 11 159 14 160 1.07e-28 115
Msa1175500 AT4G28530.1 38.323 167 84 5 12 161 10 174 1.08e-28 117
Msa1175500 AT3G04420.2 40.588 170 97 4 13 180 4 171 1.23e-28 115
Msa1175500 AT3G04420.1 42.384 151 83 4 13 161 4 152 1.76e-28 116
Msa1175500 AT3G12977.1 37.500 184 95 7 12 184 18 192 1.95e-28 114
Msa1175500 AT1G34180.4 42.683 164 73 5 15 160 19 179 3.14e-28 117
Msa1175500 AT1G34180.2 42.073 164 74 5 15 160 19 179 5.99e-28 118
Msa1175500 AT1G32770.1 40.719 167 75 7 12 159 16 177 1.01e-27 114
Msa1175500 AT1G02220.1 43.537 147 78 4 12 157 3 145 1.48e-27 114
Msa1175500 AT1G52880.1 35.849 212 111 7 16 211 21 223 4.87e-27 111
Msa1175500 AT3G44350.2 35.000 160 94 4 10 160 3 161 2.52e-26 107
Msa1175500 AT3G44350.1 38.346 133 78 3 10 139 3 134 1.59e-25 103
Msa1175500 AT1G32870.1 44.156 154 73 6 15 160 13 161 3.02e-24 106
Msa1175500 AT1G32870.2 44.156 154 73 6 15 160 13 161 3.03e-24 106
Msa1175500 AT1G32870.3 44.156 154 73 6 15 160 49 197 4.96e-24 106
Msa1175500 AT3G04430.1 38.519 135 67 5 18 140 6 136 2.66e-21 92.4
Msa1175500 AT5G61430.2 42.453 106 51 5 63 160 1 104 7.13e-19 87.0
Msa1175500 AT5G64530.2 36.641 131 65 6 11 139 2 116 9.95e-19 84.0
Msa1175500 AT5G64530.1 36.154 130 65 6 12 139 3 116 1.55e-18 84.0
Msa1175500 AT3G12977.2 38.400 125 62 5 70 184 20 139 2.37e-18 84.7
Msa1175500 AT1G56010.1 41.414 99 47 3 70 159 8 104 1.02e-17 83.6
Msa1175500 AT4G10350.2 39.496 119 63 4 61 172 11 127 1.12e-17 84.0
Msa1175500 AT4G28530.2 41.284 109 47 3 12 105 10 116 1.33e-16 81.3
Msa1175500 AT3G10490.4 46.250 80 34 3 87 159 1 78 7.73e-16 79.3
Msa1175500 AT3G10490.3 46.250 80 34 3 87 159 1 78 7.73e-16 79.3
Msa1175500 AT3G56530.1 32.667 150 93 5 12 156 52 198 7.67e-14 73.2
Msa1175500 AT2G33480.3 36.735 98 54 3 68 159 8 103 4.91e-13 68.9
Msa1175500 AT3G55210.1 31.325 166 96 9 6 156 4 166 9.00e-13 69.3
Msa1175500 AT2G18060.2 45.714 70 32 3 94 159 3 70 2.23e-11 65.1
Msa1175500 AT5G14490.4 28.977 176 101 6 12 169 55 224 2.31e-11 65.9
Msa1175500 AT5G14490.1 28.977 176 101 6 12 169 58 227 2.53e-11 65.9
Msa1175500 AT5G14490.3 28.977 176 101 6 12 169 58 227 3.97e-11 65.1
Msa1175500 AT5G14490.2 28.977 176 101 6 12 169 55 224 4.69e-11 64.3

Find 105 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATTCCATATTTATTTC+TGG 0.145339 8_1:-6852747 None:intergenic
ATTGATTCCATATTTATTTC+TGG 0.145339 8_1:-6853204 None:intergenic
AGTACCTTTCGAGATGATTT+TGG 0.182200 8_1:+6853958 Msa1175500:CDS
AGGGGTAGCAATAATATTAT+TGG 0.231520 8_1:+6851783 Msa1175500:CDS
GCATCGTGAATTGGCGAGTT+TGG 0.245634 8_1:-6853291 None:intergenic
GCATCGTGAATTGGCGAGTT+TGG 0.263517 8_1:-6852834 None:intergenic
AAGTTTAATTCTAACATATT+AGG 0.265409 8_1:+6854215 Msa1175500:three_prime_UTR
AAATATGGAATCAATATTTC+AGG 0.281347 8_1:+6852755 Msa1175500:CDS
AAATATGGAATCAATATTTC+AGG 0.281347 8_1:+6853212 Msa1175500:CDS
AATGATTATTGACGGGGATT+TGG 0.293193 8_1:+6852932 Msa1175500:CDS
AATGATTATTGACGGGGATT+TGG 0.293193 8_1:+6853389 Msa1175500:CDS
ATAATATCATAGGCTAGTTT+TGG 0.296487 8_1:-6851189 None:intergenic
GATGTTGTCATTTCTAAAAT+AGG 0.297612 8_1:-6852856 None:intergenic
GATGTTGTCATTTCTAAAAT+AGG 0.297612 8_1:-6853313 None:intergenic
TACTATAGTGGTCGTGTTCC+TGG 0.304206 8_1:+6851825 Msa1175500:CDS
AAAACTAAAATTGAGGAATA+AGG 0.314591 8_1:-6854356 None:intergenic
TTTAAAAGGACAACTAATAA+TGG 0.327657 8_1:+6851720 Msa1175500:CDS
CCTTAGGAACAGTTGTAAAA+TGG 0.330273 8_1:+6854302 Msa1175500:three_prime_UTR
GGGGTAGCAATAATATTATT+GGG 0.331309 8_1:+6851784 Msa1175500:CDS
TTCAACTGCAGATATATCTT+TGG 0.332842 8_1:+6854005 Msa1175500:CDS
TGGAAAGGATCGAAAGATTA+AGG 0.337849 8_1:+6851758 Msa1175500:CDS
CATCGTGAATTGGCGAGTTT+GGG 0.338758 8_1:-6852833 None:intergenic
CTAAAATAGGCATCGTGAAT+TGG 0.340882 8_1:-6852843 None:intergenic
CTAAAATAGGCATCGTGAAT+TGG 0.340882 8_1:-6853300 None:intergenic
CAAAGAGTAAGAGGTTTAAA+AGG 0.342416 8_1:+6851706 Msa1175500:CDS
ACCACTAAGCTAACACTTCA+TGG 0.352118 8_1:-6854238 None:intergenic
GTCAAGAGTCGGAGGAAATA+AGG 0.354940 8_1:-6851387 None:intergenic
CATCGTGAATTGGCGAGTTT+GGG 0.364030 8_1:-6853290 None:intergenic
TCAACGCATGGTAATGTTCC+TGG 0.366029 8_1:+6853883 Msa1175500:CDS
TACTTTGCCAGAAATAAATA+TGG 0.372071 8_1:+6852740 Msa1175500:CDS
TACTTTGCCAGAAATAAATA+TGG 0.372071 8_1:+6853197 Msa1175500:CDS
TCCTCTTCAATGGTTTCAAA+TGG 0.379573 8_1:-6852891 None:intergenic
GGATCGAAAGATTAAGGTTA+GGG 0.381317 8_1:+6851764 Msa1175500:CDS
TTTCTTGAACATCCTAGTTC+AGG 0.382346 8_1:+6853832 Msa1175500:CDS
GATAGAAAACAGGTGCTTCC+AGG 0.383330 8_1:-6853901 None:intergenic
ATAAGTATGCAAAGAGTAAG+AGG 0.388091 8_1:+6851697 Msa1175500:CDS
TTTGCATACTTATAATCAAT+AGG 0.393689 8_1:-6851687 None:intergenic
ATGAATCATTTGATCAAGAT+AGG 0.394555 8_1:-6854185 None:intergenic
GAACTTATCTTCCTCTTCAA+TGG 0.404183 8_1:-6852901 None:intergenic
GAGGTTGATCATAATATCAT+AGG 0.407299 8_1:-6851199 None:intergenic
AGAGAGATATGAAGAGAAAG+TGG 0.412084 8_1:-6851290 None:intergenic
TACTTGCATACATCAACTTC+AGG 0.414938 8_1:-6851515 None:intergenic
AAGACTCTTGTTTACTATAG+TGG 0.415807 8_1:+6851813 Msa1175500:CDS
CCAGTCCGAGTCGTTGAAAA+TGG 0.421990 8_1:+6852968 Msa1175500:CDS
CCAGTCCGAGTCGTTGAAAA+TGG 0.421990 8_1:+6853425 Msa1175500:CDS
GCCATGAAGTGTTAGCTTAG+TGG 0.422146 8_1:+6854237 Msa1175500:three_prime_UTR
TGGCTGGTCTTGGATGATAC+TGG 0.422975 8_1:-6854086 None:intergenic
TCCTCTTCAATGGTGTCAAA+TGG 0.426557 8_1:-6853348 None:intergenic
CGATAGTTACATTCTTAATA+CGG 0.429588 8_1:+6854391 Msa1175500:three_prime_UTR
GAACTTATCTTCCTCTTCAA+TGG 0.430761 8_1:-6853358 None:intergenic
TTCCTGGTGTTAAAAGCAGC+TGG 0.431255 8_1:+6851841 Msa1175500:CDS
TCATTATTAGTTCAGTTGCT+TGG 0.431816 8_1:-6854157 None:intergenic
AAAGCATGAATTTGTAATGC+TGG 0.434835 8_1:-6851244 None:intergenic
GACATGAAGATGGCTGGTCT+TGG 0.436307 8_1:-6854096 None:intergenic
AGGATCGAAAGATTAAGGTT+AGG 0.440394 8_1:+6851763 Msa1175500:CDS
AGACATAGTTCTAATTCCTT+AGG 0.443594 8_1:+6854286 Msa1175500:three_prime_UTR
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_1:+6852978 Msa1175500:CDS
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_1:+6853435 Msa1175500:CDS
ATTCTTTAAAGATAGAAAAC+AGG 0.461828 8_1:-6853911 None:intergenic
TTTACAAGCTCTTCATCTGT+TGG 0.462478 8_1:-6851437 None:intergenic
GTCAGTTCAATGATTATTGA+CGG 0.463736 8_1:+6852924 Msa1175500:CDS
GTCAGTTCAATGATTATTGA+CGG 0.463736 8_1:+6853381 Msa1175500:CDS
ACTCTTGACCATGTTCCTGT+TGG 0.471228 8_1:+6851401 Msa1175500:CDS
TGATATTCTTGATACTTCAA+TGG 0.472818 8_1:+6853807 Msa1175500:CDS
CATATTGTGAACTTCTGATA+AGG 0.477364 8_1:+6854414 Msa1175500:three_prime_UTR
TTCAATCTCTGAAAATGAGC+AGG 0.480194 8_1:+6852800 Msa1175500:CDS
TTCAATCTCTGAAAATGAGC+AGG 0.480194 8_1:+6853257 Msa1175500:CDS
TCAGTTCAATGATTATTGAC+GGG 0.480425 8_1:+6852925 Msa1175500:CDS
TCAGTTCAATGATTATTGAC+GGG 0.480425 8_1:+6853382 Msa1175500:CDS
TCGAAAAGAGCTGCTTTAAG+AGG 0.483514 8_1:+6854117 Msa1175500:CDS
GAAATTATCATTAATTAAAG+TGG 0.491758 8_1:-6854334 None:intergenic
GCAGAGTATTCGCCTGAACT+AGG 0.495091 8_1:-6853844 None:intergenic
TCGGAACTCATGTGTCTACT+TGG 0.499283 8_1:-6852559 None:intergenic
GGTCTGAATCTGAATCCAAC+AGG 0.502719 8_1:-6851416 None:intergenic
TCCATTTGAAACCATTGAAG+AGG 0.526651 8_1:+6852890 Msa1175500:CDS
ACAAACCTTGTCATCTTCAA+AGG 0.536374 8_1:-6851889 None:intergenic
GGAATCAATATTTCAGGCAC+AGG 0.539733 8_1:+6852761 Msa1175500:CDS
GGAATCAATATTTCAGGCAC+AGG 0.539733 8_1:+6853218 Msa1175500:CDS
GATGCAGATATATGTGATGA+AGG 0.540324 8_1:+6852532 Msa1175500:CDS
GTGAATTGGCGAGTTTGGGT+TGG 0.547773 8_1:-6852829 None:intergenic
TCCATTTGACACCATTGAAG+AGG 0.551076 8_1:+6853347 Msa1175500:CDS
TATGAACCTTGGGAGTTACC+AGG 0.553928 8_1:+6851536 Msa1175500:CDS
TGTATGCAAGTATGAACCTT+GGG 0.557609 8_1:+6851526 Msa1175500:CDS
AGGTATAACATTGTTGACAA+TGG 0.563065 8_1:-6851495 None:intergenic
GTGAATTGGCGAGTTTGGGA+TGG 0.564115 8_1:-6853286 None:intergenic
TAAAATCAGATGACCCAGAA+TGG 0.564520 8_1:+6851652 Msa1175500:CDS
ATTAAGAATGTAACTATCGT+TGG 0.564747 8_1:-6854387 None:intergenic
TGCTGAAGTAGTCTCTATGC+CGG 0.566096 8_1:+6853016 Msa1175500:CDS
AATTAGAACTATGTCTCTTG+AGG 0.567105 8_1:-6854279 None:intergenic
CAGTTCAATGATTATTGACG+GGG 0.578711 8_1:+6852926 Msa1175500:CDS
CAGTTCAATGATTATTGACG+GGG 0.578711 8_1:+6853383 Msa1175500:CDS
TCCTGGTGTTAAAAGCAGCT+GGG 0.595945 8_1:+6851842 Msa1175500:CDS
ATCTGCAGTTGAATCACAAG+AGG 0.597794 8_1:-6853995 None:intergenic
ATGCAGATATATGTGATGAA+GGG 0.608515 8_1:+6852533 Msa1175500:CDS
TACCACCTTTGAAGATGACA+AGG 0.610149 8_1:+6851884 Msa1175500:CDS
ATCTGAATCCAACAGGAACA+TGG 0.616076 8_1:-6851409 None:intergenic
AACCTTGTCATCTTCAAAGG+TGG 0.630537 8_1:-6851886 None:intergenic
ACAGGAACATGGTCAAGAGT+CGG 0.636129 8_1:-6851398 None:intergenic
AAATTGTTGAAATCAACGCA+TGG 0.648209 8_1:+6853871 Msa1175500:CDS
TGCAGATATATGTGATGAAG+GGG 0.648801 8_1:+6852534 Msa1175500:CDS
TGCTGAAGTAGTCTCTACGC+CGG 0.650251 8_1:+6853473 Msa1175500:CDS
GCTGCTTTAAGAGGATCTTG+AGG 0.651591 8_1:+6854126 Msa1175500:CDS
ATGTATGCAAGTATGAACCT+TGG 0.657459 8_1:+6851525 Msa1175500:CDS
GGAACATGGTCAAGAGTCGG+AGG 0.664688 8_1:-6851395 None:intergenic
GATCGAAAGATTAAGGTTAG+GGG 0.678144 8_1:+6851765 Msa1175500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTGAAATTTGTTT+TGG - chr8_1:6851336-6851355 None:intergenic 15.0%
!!! TTTTATGAGAAAATAATGTT+GGG - chr8_1:6851586-6851605 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGT+TGG - chr8_1:6851587-6851606 None:intergenic 15.0%
!! AAAGATGAAAAACATTAAAA+AGG - chr8_1:6851615-6851634 None:intergenic 15.0%
!! ATATCTATTATCATTTATCA+AGG - chr8_1:6852635-6852654 None:intergenic 15.0%
!!! AGAACTTATATTTGTTTTAT+AGG + chr8_1:6852710-6852729 Msa1175500:intron 15.0%
!! ATTTCTATTATCATTTATCA+AGG - chr8_1:6853092-6853111 None:intergenic 15.0%
!!! AGAACTTATATTTGTTTTAT+AGG + chr8_1:6852710-6852729 Msa1175500:intron 15.0%
!! TTTGAACAATATATATTTAC+CGG - chr8_1:6853495-6853514 None:intergenic 15.0%
!! AAGTTTAATTCTAACATATT+AGG + chr8_1:6854215-6854234 Msa1175500:three_prime_UTR 15.0%
!! GAAATTATCATTAATTAAAG+TGG - chr8_1:6854337-6854356 None:intergenic 15.0%
!! AACAAAAACAAAATATAGGA+AGG - chr8_1:6851160-6851179 None:intergenic 20.0%
!!! TTGTTTGTTTTTTTTTTACC+TGG - chr8_1:6851557-6851576 None:intergenic 20.0%
!! TTTATGAGAAAATAATGTTG+GGG - chr8_1:6851585-6851604 None:intergenic 20.0%
!! TTTGCATACTTATAATCAAT+AGG - chr8_1:6851690-6851709 None:intergenic 20.0%
!! TTTAAAAGGACAACTAATAA+TGG + chr8_1:6851720-6851739 Msa1175500:CDS 20.0%
!! TATGATACCAAAAGAAAAAA+GGG - chr8_1:6852159-6852178 None:intergenic 20.0%
!! ATATGATACCAAAAGAAAAA+AGG - chr8_1:6852160-6852179 None:intergenic 20.0%
!!! TTCAGTTTTTGAATGTTAAT+AGG + chr8_1:6852339-6852358 Msa1175500:intron 20.0%
!!! CAAAAGTTTCTTTATTTTCA+TGG - chr8_1:6852585-6852604 None:intergenic 20.0%
!!! GAAAATAAAGAAACTTTTGA+AGG + chr8_1:6852586-6852605 Msa1175500:CDS 20.0%
!!! ACTTATATTTGTTTTATAGG+TGG + chr8_1:6852713-6852732 Msa1175500:intron 20.0%
!!! CTTATATTTGTTTTATAGGT+GGG + chr8_1:6852714-6852733 Msa1175500:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_1:6852750-6852769 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_1:6852755-6852774 Msa1175500:CDS 20.0%
!!! ACTTATATTTGTTTTATAGG+TGG + chr8_1:6852713-6852732 Msa1175500:intron 20.0%
!!! CTTATATTTGTTTTATAGGT+GGG + chr8_1:6852714-6852733 Msa1175500:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_1:6852750-6852769 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_1:6852755-6852774 Msa1175500:CDS 20.0%
!!! ATAAATTGTGAAAAAGTACT+TGG + chr8_1:6853614-6853633 Msa1175500:intron 20.0%
!! AAGAAAATAAGCATTATGAA+AGG - chr8_1:6853768-6853787 None:intergenic 20.0%
!!! ATTCTTTAAAGATAGAAAAC+AGG - chr8_1:6853914-6853933 None:intergenic 20.0%
!!! TGTTTTCTATCTTTAAAGAA+TGG + chr8_1:6853913-6853932 Msa1175500:CDS 20.0%
!! AAAACTAAAATTGAGGAATA+AGG - chr8_1:6854359-6854378 None:intergenic 20.0%
!! ATGTTCAAAAACTAAAATTG+AGG - chr8_1:6854366-6854385 None:intergenic 20.0%
! GCTGAACAAAAACAAAATAT+AGG - chr8_1:6851164-6851183 None:intergenic 25.0%
!!! ATAATATCATAGGCTAGTTT+TGG - chr8_1:6851192-6851211 None:intergenic 25.0%
!!! GTAACTTGTTTTTGAGATAA+TGG - chr8_1:6851463-6851482 None:intergenic 25.0%
!!! GGTTTGTTTTGTTACAATAA+AGG + chr8_1:6851905-6851924 Msa1175500:intron 25.0%
!! TTACTATTTTCCTATATGAC+TGG + chr8_1:6852078-6852097 Msa1175500:intron 25.0%
!! TTTGGTATCATATTTGTTAG+AGG + chr8_1:6852167-6852186 Msa1175500:intron 25.0%
! AAAACACAAATCACAAACAA+TGG + chr8_1:6852215-6852234 Msa1175500:intron 25.0%
! ACACTGTCTTTGTAATTAAA+AGG - chr8_1:6852248-6852267 None:intergenic 25.0%
!!! AGTTTCTTTATTTTCATGGT+CGG - chr8_1:6852581-6852600 None:intergenic 25.0%
!! ATATTTTGCGAACAAAGTTT+TGG + chr8_1:6852651-6852670 Msa1175500:intron 25.0%
! TACTTTGCCAGAAATAAATA+TGG + chr8_1:6852740-6852759 Msa1175500:CDS 25.0%
!!! GATGTTGTCATTTCTAAAAT+AGG - chr8_1:6852859-6852878 None:intergenic 25.0%
! CAGGAACAATATATATTTAC+CGG - chr8_1:6853038-6853057 None:intergenic 25.0%
! TATATATTGTTCCTGATGTA+AGG + chr8_1:6853043-6853062 Msa1175500:intron 25.0%
!! AAATTTTGCCAACAAAGTTT+TGG + chr8_1:6853108-6853127 Msa1175500:intron 25.0%
! TACTTTGCCAGAAATAAATA+TGG + chr8_1:6852740-6852759 Msa1175500:CDS 25.0%
!!! GATGTTGTCATTTCTAAAAT+AGG - chr8_1:6852859-6852878 None:intergenic 25.0%
! ATACACACTTTCATATCATT+TGG - chr8_1:6853520-6853539 None:intergenic 25.0%
! TGATATTCTTGATACTTCAA+TGG + chr8_1:6853807-6853826 Msa1175500:CDS 25.0%
! ATGAATCATTTGATCAAGAT+AGG - chr8_1:6854188-6854207 None:intergenic 25.0%
! ATTAAGAATGTAACTATCGT+TGG - chr8_1:6854390-6854409 None:intergenic 25.0%
! CGATAGTTACATTCTTAATA+CGG + chr8_1:6854391-6854410 Msa1175500:three_prime_UTR 25.0%
! GAGGTTGATCATAATATCAT+AGG - chr8_1:6851202-6851221 None:intergenic 30.0%
AAAGCATGAATTTGTAATGC+TGG - chr8_1:6851247-6851266 None:intergenic 30.0%
AGGTATAACATTGTTGACAA+TGG - chr8_1:6851498-6851517 None:intergenic 30.0%
!!! TTCATCTTTTTCAGCTTGTT+CGG + chr8_1:6851626-6851645 Msa1175500:intron 30.0%
ATAAGTATGCAAAGAGTAAG+AGG + chr8_1:6851697-6851716 Msa1175500:CDS 30.0%
CAAAGAGTAAGAGGTTTAAA+AGG + chr8_1:6851706-6851725 Msa1175500:CDS 30.0%
! GGACAACTAATAATGGTTTT+TGG + chr8_1:6851727-6851746 Msa1175500:CDS 30.0%
AGGGGTAGCAATAATATTAT+TGG + chr8_1:6851783-6851802 Msa1175500:CDS 30.0%
GGGGTAGCAATAATATTATT+GGG + chr8_1:6851784-6851803 Msa1175500:CDS 30.0%
! AAGACTCTTGTTTACTATAG+TGG + chr8_1:6851813-6851832 Msa1175500:CDS 30.0%
GACAAAACATGAGTTTATTC+AGG + chr8_1:6852053-6852072 Msa1175500:intron 30.0%
!!! CTTTGAACCCTTTTTTCTTT+TGG + chr8_1:6852149-6852168 Msa1175500:intron 30.0%
AAAAGACTAAAAGAGTGACT+TGG - chr8_1:6852320-6852339 None:intergenic 30.0%
! TATCATCCGAAATTTTGTAG+CGG + chr8_1:6852452-6852471 Msa1175500:intron 30.0%
AAAAGTCCGCTACAAAATTT+CGG - chr8_1:6852461-6852480 None:intergenic 30.0%
ATGCAGATATATGTGATGAA+GGG + chr8_1:6852533-6852552 Msa1175500:CDS 30.0%
GTCAGTTCAATGATTATTGA+CGG + chr8_1:6852924-6852943 Msa1175500:CDS 30.0%
TCAGTTCAATGATTATTGAC+GGG + chr8_1:6852925-6852944 Msa1175500:CDS 30.0%
!! CTTTAAAGCCAAAACTTTGT+TGG - chr8_1:6852662-6852681 None:intergenic 30.0%
GTCAGTTCAATGATTATTGA+CGG + chr8_1:6852924-6852943 Msa1175500:CDS 30.0%
TCAGTTCAATGATTATTGAC+GGG + chr8_1:6852925-6852944 Msa1175500:CDS 30.0%
TTGGATGAAATGAAATGTCT+AGG + chr8_1:6853633-6853652 Msa1175500:intron 30.0%
CATTCTAGTAGCATTTCAAA+AGG - chr8_1:6853744-6853763 None:intergenic 30.0%
! TCTTCTACAATTTTACAGTG+TGG + chr8_1:6853784-6853803 Msa1175500:intron 30.0%
AAATTGTTGAAATCAACGCA+TGG + chr8_1:6853871-6853890 Msa1175500:CDS 30.0%
TTCAACTGCAGATATATCTT+TGG + chr8_1:6854005-6854024 Msa1175500:CDS 30.0%
! GTTTTTGCGTTTTCTTATAG+TGG - chr8_1:6854067-6854086 None:intergenic 30.0%
TCATTATTAGTTCAGTTGCT+TGG - chr8_1:6854160-6854179 None:intergenic 30.0%
AATTAGAACTATGTCTCTTG+AGG - chr8_1:6854282-6854301 None:intergenic 30.0%
!! AGACATAGTTCTAATTCCTT+AGG + chr8_1:6854286-6854305 Msa1175500:three_prime_UTR 30.0%
CATATTGTGAACTTCTGATA+AGG + chr8_1:6854414-6854433 Msa1175500:three_prime_UTR 30.0%
AGAGAGATATGAAGAGAAAG+TGG - chr8_1:6851293-6851312 None:intergenic 35.0%
TTTACAAGCTCTTCATCTGT+TGG - chr8_1:6851440-6851459 None:intergenic 35.0%
TACTTGCATACATCAACTTC+AGG - chr8_1:6851518-6851537 None:intergenic 35.0%
ATGTATGCAAGTATGAACCT+TGG + chr8_1:6851525-6851544 Msa1175500:CDS 35.0%
TGTATGCAAGTATGAACCTT+GGG + chr8_1:6851526-6851545 Msa1175500:CDS 35.0%
TAAAATCAGATGACCCAGAA+TGG + chr8_1:6851652-6851671 Msa1175500:CDS 35.0%
GACACAAGAAAAACCATTCT+GGG - chr8_1:6851668-6851687 None:intergenic 35.0%
!! AATGGTTTTTGGAAAGCTAC+TGG + chr8_1:6851738-6851757 Msa1175500:CDS 35.0%
!! TTTTTGGAAAGCTACTGGAA+AGG + chr8_1:6851743-6851762 Msa1175500:CDS 35.0%
TGGAAAGGATCGAAAGATTA+AGG + chr8_1:6851758-6851777 Msa1175500:CDS 35.0%
AGGATCGAAAGATTAAGGTT+AGG + chr8_1:6851763-6851782 Msa1175500:CDS 35.0%
GGATCGAAAGATTAAGGTTA+GGG + chr8_1:6851764-6851783 Msa1175500:CDS 35.0%
GATCGAAAGATTAAGGTTAG+GGG + chr8_1:6851765-6851784 Msa1175500:CDS 35.0%
ACAAACCTTGTCATCTTCAA+AGG - chr8_1:6851892-6851911 None:intergenic 35.0%
!! ACTAAAAGAGTGACTTGGTA+AGG - chr8_1:6852315-6852334 None:intergenic 35.0%
!! CGCATTAGTTTGTTTAGTCT+TGG + chr8_1:6852392-6852411 Msa1175500:intron 35.0%
AGCTGAGAAAAAAGCTGAAA+AGG + chr8_1:6852504-6852523 Msa1175500:CDS 35.0%
GATGCAGATATATGTGATGA+AGG + chr8_1:6852532-6852551 Msa1175500:CDS 35.0%
TGCAGATATATGTGATGAAG+GGG + chr8_1:6852534-6852553 Msa1175500:CDS 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_1:6852602-6852621 Msa1175500:intron 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_1:6852691-6852710 None:intergenic 35.0%
! CATTTTCAGAGATTGAAGGA+AGG - chr8_1:6852797-6852816 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_1:6852801-6852820 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_1:6852800-6852819 Msa1175500:CDS 35.0%
! CTAAAATAGGCATCGTGAAT+TGG - chr8_1:6852846-6852865 None:intergenic 35.0%
! TCCATTTGAAACCATTGAAG+AGG + chr8_1:6852890-6852909 Msa1175500:CDS 35.0%
TCCTCTTCAATGGTTTCAAA+TGG - chr8_1:6852894-6852913 None:intergenic 35.0%
GAACTTATCTTCCTCTTCAA+TGG - chr8_1:6852904-6852923 None:intergenic 35.0%
CAGTTCAATGATTATTGACG+GGG + chr8_1:6852926-6852945 Msa1175500:CDS 35.0%
AATGATTATTGACGGGGATT+TGG + chr8_1:6852932-6852951 Msa1175500:CDS 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_1:6852978-6852997 Msa1175500:CDS 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_1:6852691-6852710 None:intergenic 35.0%
! CATTTTCAGAGATTGAAGGA+AGG - chr8_1:6852797-6852816 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_1:6852801-6852820 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_1:6852800-6852819 Msa1175500:CDS 35.0%
! CTAAAATAGGCATCGTGAAT+TGG - chr8_1:6852846-6852865 None:intergenic 35.0%
GAACTTATCTTCCTCTTCAA+TGG - chr8_1:6852904-6852923 None:intergenic 35.0%
CAGTTCAATGATTATTGACG+GGG + chr8_1:6852926-6852945 Msa1175500:CDS 35.0%
AATGATTATTGACGGGGATT+TGG + chr8_1:6852932-6852951 Msa1175500:CDS 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_1:6852978-6852997 Msa1175500:CDS 35.0%
TATTAGTGAACCATCCATTG+CGG + chr8_1:6853544-6853563 Msa1175500:intron 35.0%
TTTCTTGAACATCCTAGTTC+AGG + chr8_1:6853832-6853851 Msa1175500:CDS 35.0%
! AGTACCTTTCGAGATGATTT+TGG + chr8_1:6853958-6853977 Msa1175500:CDS 35.0%
! GTACCTTTCGAGATGATTTT+GGG + chr8_1:6853959-6853978 Msa1175500:CDS 35.0%
! TACCTTTCGAGATGATTTTG+GGG + chr8_1:6853960-6853979 Msa1175500:CDS 35.0%
!! TTGCGTTTTCTTATAGTGGA+AGG - chr8_1:6854063-6854082 None:intergenic 35.0%
! CCATTTTACAACTGTTCCTA+AGG - chr8_1:6854305-6854324 None:intergenic 35.0%
CCTTAGGAACAGTTGTAAAA+TGG + chr8_1:6854302-6854321 Msa1175500:three_prime_UTR 35.0%
! TAGTGTGTGTGAGAGTTTTG+AGG - chr8_1:6851221-6851240 None:intergenic 40.0%
ATCTGAATCCAACAGGAACA+TGG - chr8_1:6851412-6851431 None:intergenic 40.0%
! TTTTTACCTGGTAACTCCCA+AGG - chr8_1:6851545-6851564 None:intergenic 40.0%
!!! ATCTTTTTCAGCTTGTTCGG+TGG + chr8_1:6851629-6851648 Msa1175500:intron 40.0%
GGACACAAGAAAAACCATTC+TGG - chr8_1:6851669-6851688 None:intergenic 40.0%
! TACCACCTTTGAAGATGACA+AGG + chr8_1:6851884-6851903 Msa1175500:CDS 40.0%
AACCTTGTCATCTTCAAAGG+TGG - chr8_1:6851889-6851908 None:intergenic 40.0%
TTCAGAACAGCCAGTCATAT+AGG - chr8_1:6852091-6852110 None:intergenic 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_1:6852616-6852635 None:intergenic 40.0%
GGAATCAATATTTCAGGCAC+AGG + chr8_1:6852761-6852780 Msa1175500:CDS 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_1:6852976-6852995 None:intergenic 40.0%
TGTAAGGAGTTCCTGATGTA+AGG + chr8_1:6853059-6853078 Msa1175500:intron 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_1:6852616-6852635 None:intergenic 40.0%
GGAATCAATATTTCAGGCAC+AGG + chr8_1:6852761-6852780 Msa1175500:CDS 40.0%
TCCATTTGACACCATTGAAG+AGG + chr8_1:6853347-6853366 Msa1175500:CDS 40.0%
! TCCTCTTCAATGGTGTCAAA+TGG - chr8_1:6853351-6853370 None:intergenic 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_1:6852976-6852995 None:intergenic 40.0%
!! GACCACATTTTAGCAATGCT+TGG + chr8_1:6853579-6853598 Msa1175500:intron 40.0%
! CACCAAGCATTGCTAAAATG+TGG - chr8_1:6853584-6853603 None:intergenic 40.0%
! ACCTTTCGAGATGATTTTGG+GGG + chr8_1:6853961-6853980 Msa1175500:CDS 40.0%
!! AGATGATTTTGGGGGATTAG+AGG + chr8_1:6853969-6853988 Msa1175500:CDS 40.0%
ATCTGCAGTTGAATCACAAG+AGG - chr8_1:6853998-6854017 None:intergenic 40.0%
! AGCTCTTTTCGACATGAAGA+TGG - chr8_1:6854109-6854128 None:intergenic 40.0%
! TCGAAAAGAGCTGCTTTAAG+AGG + chr8_1:6854117-6854136 Msa1175500:CDS 40.0%
ACCACTAAGCTAACACTTCA+TGG - chr8_1:6854241-6854260 None:intergenic 40.0%
GTCAAGAGTCGGAGGAAATA+AGG - chr8_1:6851390-6851409 None:intergenic 45.0%
ACAGGAACATGGTCAAGAGT+CGG - chr8_1:6851401-6851420 None:intergenic 45.0%
ACTCTTGACCATGTTCCTGT+TGG + chr8_1:6851401-6851420 Msa1175500:CDS 45.0%
GGTCTGAATCTGAATCCAAC+AGG - chr8_1:6851419-6851438 None:intergenic 45.0%
TATGAACCTTGGGAGTTACC+AGG + chr8_1:6851536-6851555 Msa1175500:CDS 45.0%
TACTATAGTGGTCGTGTTCC+TGG + chr8_1:6851825-6851844 Msa1175500:CDS 45.0%
! TTCCTGGTGTTAAAAGCAGC+TGG + chr8_1:6851841-6851860 Msa1175500:CDS 45.0%
! TCCTGGTGTTAAAAGCAGCT+GGG + chr8_1:6851842-6851861 Msa1175500:CDS 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_1:6852562-6852581 None:intergenic 45.0%
CATCGTGAATTGGCGAGTTT+GGG - chr8_1:6852836-6852855 None:intergenic 45.0%
TGCTGAAGTAGTCTCTATGC+CGG + chr8_1:6853016-6853035 Msa1175500:CDS 45.0%
CATCAGGAACTCCTTACATC+AGG - chr8_1:6853057-6853076 None:intergenic 45.0%
CATCGTGAATTGGCGAGTTT+GGG - chr8_1:6852836-6852855 None:intergenic 45.0%
TCAAACTCATGTCACCGCAA+TGG - chr8_1:6853561-6853580 None:intergenic 45.0%
! TCAACGCATGGTAATGTTCC+TGG + chr8_1:6853883-6853902 Msa1175500:CDS 45.0%
GATAGAAAACAGGTGCTTCC+AGG - chr8_1:6853904-6853923 None:intergenic 45.0%
TCCCCCAAAATCATCTCGAA+AGG - chr8_1:6853965-6853984 None:intergenic 45.0%
! CTTTTCGACATGAAGATGGC+TGG - chr8_1:6854105-6854124 None:intergenic 45.0%
!! GCTGCTTTAAGAGGATCTTG+AGG + chr8_1:6854126-6854145 Msa1175500:CDS 45.0%
! GCCATGAAGTGTTAGCTTAG+TGG + chr8_1:6854237-6854256 Msa1175500:three_prime_UTR 45.0%
!!! ACCCAGCTGCTTTTAACACC+AGG - chr8_1:6851846-6851865 None:intergenic 50.0%
GTGAATTGGCGAGTTTGGGT+TGG - chr8_1:6852832-6852851 None:intergenic 50.0%
GCATCGTGAATTGGCGAGTT+TGG - chr8_1:6852837-6852856 None:intergenic 50.0%
!! CCATTTTCAACGACTCGGAC+TGG - chr8_1:6852971-6852990 None:intergenic 50.0%
CCAGTCCGAGTCGTTGAAAA+TGG + chr8_1:6852968-6852987 Msa1175500:CDS 50.0%
GTGAATTGGCGAGTTTGGGA+TGG - chr8_1:6853289-6853308 None:intergenic 50.0%
GCATCGTGAATTGGCGAGTT+TGG - chr8_1:6852837-6852856 None:intergenic 50.0%
!! CCATTTTCAACGACTCGGAC+TGG - chr8_1:6852971-6852990 None:intergenic 50.0%
CCAGTCCGAGTCGTTGAAAA+TGG + chr8_1:6852968-6852987 Msa1175500:CDS 50.0%
TGCTGAAGTAGTCTCTACGC+CGG + chr8_1:6853473-6853492 Msa1175500:CDS 50.0%
ACTCATGTCACCGCAATGGA+TGG - chr8_1:6853557-6853576 None:intergenic 50.0%
! GCAGAGTATTCGCCTGAACT+AGG - chr8_1:6853847-6853866 None:intergenic 50.0%
!! TGGCTGGTCTTGGATGATAC+TGG - chr8_1:6854089-6854108 None:intergenic 50.0%
!! GACATGAAGATGGCTGGTCT+TGG - chr8_1:6854099-6854118 None:intergenic 50.0%
GGAACATGGTCAAGAGTCGG+AGG - chr8_1:6851398-6851417 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 6851149 6854521 6851149 ID=Msa1175500;Name=Msa1175500
chr8_1 mRNA 6851149 6854521 6851149 ID=Msa1175500-mRNA-1;Parent=Msa1175500;Name=Msa1175500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=231|1|1|1|1|1|6|375|515
chr8_1 exon 6851149 6851557 6851149 ID=Msa1175500-mRNA-1:exon:2482;Parent=Msa1175500-mRNA-1
chr8_1 exon 6851640 6851905 6851640 ID=Msa1175500-mRNA-1:exon:2483;Parent=Msa1175500-mRNA-1
chr8_1 exon 6852472 6852618 6852472 ID=Msa1175500-mRNA-1:exon:2484;Parent=Msa1175500-mRNA-1
chr8_1 exon 6852732 6853037 6852732 ID=Msa1175500-mRNA-1:exon:2485;Parent=Msa1175500-mRNA-1
chr8_1 exon 6853189 6853494 6853189 ID=Msa1175500-mRNA-1:exon:2486;Parent=Msa1175500-mRNA-1
chr8_1 exon 6853802 6854521 6853802 ID=Msa1175500-mRNA-1:exon:2487;Parent=Msa1175500-mRNA-1
chr8_1 five_prime_UTR 6851149 6851379 6851149 ID=Msa1175500-mRNA-1:five_prime_utr;Parent=Msa1175500-mRNA-1
chr8_1 CDS 6851380 6851557 6851380 ID=Msa1175500-mRNA-1:cds;Parent=Msa1175500-mRNA-1
chr8_1 CDS 6851640 6851905 6851640 ID=Msa1175500-mRNA-1:cds;Parent=Msa1175500-mRNA-1
chr8_1 CDS 6852472 6852618 6852472 ID=Msa1175500-mRNA-1:cds;Parent=Msa1175500-mRNA-1
chr8_1 CDS 6852732 6853037 6852732 ID=Msa1175500-mRNA-1:cds;Parent=Msa1175500-mRNA-1
chr8_1 CDS 6853189 6853494 6853189 ID=Msa1175500-mRNA-1:cds;Parent=Msa1175500-mRNA-1
chr8_1 CDS 6853802 6854146 6853802 ID=Msa1175500-mRNA-1:cds;Parent=Msa1175500-mRNA-1
chr8_1 three_prime_UTR 6854147 6854521 6854147 ID=Msa1175500-mRNA-1:three_prime_utr;Parent=Msa1175500-mRNA-1
Gene Sequence

>Msa1175500

ATGACAACCTTATTTCCTCCGACTCTTGACCATGTTCCTGTTGGATTCAGATTCAGACCAACAGATGAAGAGCTTGTAAACCATTATCTCAAAAACAAGTTACTTGATAACGATTCCATTGTCAACAATGTTATACCTGAAGTTGATGTATGCAAGTATGAACCTTGGGAGTTACCAGCTTGTTCGGTGGTAAAATCAGATGACCCAGAATGGTTTTTCTTGTGTCCTATTGATTATAAGTATGCAAAGAGTAAGAGGTTTAAAAGGACAACTAATAATGGTTTTTGGAAAGCTACTGGAAAGGATCGAAAGATTAAGGTTAGGGGTAGCAATAATATTATTGGGATTAAGAAGACTCTTGTTTACTATAGTGGTCGTGTTCCTGGTGTTAAAAGCAGCTGGGTGATTCATGAATATCATGATACCACCTTTGAAGATGACAAGCGGACTTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAAAGGAAGCTGATGCAGATATATGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGACCATGAAAATAAAGAAACTTTTGAAGGAATTCCTGATGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCAACCCAAACTCGCCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCAGAGTCCATTTGAAACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTATGCCGGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCATCCCAAACTCGCCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCAGAGTCCATTTGACACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTACGCCGTGTGGTGATATTCTTGATACTTCAATGGCATTTCTTGAACATCCTAGTTCAGGCGAATACTCTGCATCAAAATTGTTGAAATCAACGCATGGTAATGTTCCTGGAAGCACCTGTTTTCTATCTTTAAAGAATGGTGAAATCGAAGACAACAACGAGAGTACCTTTCGAGATGATTTTGGGGGATTAGAGGCATCCTCTTGTGATTCAACTGCAGATATATCTTTGGAGACGATCAATTGTATTGAAATTTCTAGTTTACCTTCCACTATAAGAAAACGCAAAAACCAGTATCATCCAAGACCAGCCATCTTCATGTCGAAAAGAGCTGCTTTAAGAGGATCTTGA
Protein sequence

>Msa1175500

MTTLFPPTLDHVPVGFRFRPTDEELVNHYLKNKLLDNDSIVNNVIPEVDVCKYEPWELPACSVVKSDDPEWFFLCPIDYKYAKSKRFKRTTNNGFWKATGKDRKIKVRGSNNIIGIKKTLVYYSGRVPGVKSSWVIHEYHDTTFEDDKRTFVLCRLMKKAEKKAEKEADADICDEGEPSRHMSSDHENKETFEGIPDVGDTLPEINMESIFQAQAEKYLPSISENEQEVSNPNSPIHDAYFRNDNIIVQSPFETIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSMPVGDTLPEINMESIFQAQAEKYLPSISENEQEVSIPNSPIHDAYFRNDNIIVQSPFDTIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSTPCGDILDTSMAFLEHPSSGEYSASKLLKSTHGNVPGSTCFLSLKNGEIEDNNESTFRDDFGGLEASSCDSTADISLETINCIEISSLPSTIRKRKNQYHPRPAIFMSKRAALRGS*