AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1315920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315920 MtrunA17_Chr8g0345691 88.065 310 31 1 1 304 1 310 0.0 540
Msa1315920 MtrunA17_Chr8g0345691 84.685 222 28 1 300 515 198 419 9.39e-126 374
Msa1315920 MtrunA17_Chr8g0345671 66.873 323 85 6 1 304 1 320 2.68e-138 405
Msa1315920 MtrunA17_Chr8g0345671 52.991 234 59 5 300 515 198 398 2.02e-62 209
Msa1315920 MtrunA17_Chr8g0345721 61.017 177 38 2 1 148 26 200 5.21e-69 220
Msa1315920 MtrunA17_Chr8g0345741 69.565 138 42 0 23 160 2 139 1.04e-65 209
Msa1315920 MtrunA17_Chr8g0345711 59.740 154 61 1 1 153 1 154 1.54e-61 199
Msa1315920 MtrunA17_Chr8g0345731 61.039 154 55 2 10 160 22 173 2.65e-61 199
Msa1315920 MtrunA17_Chr5g0428991 43.348 233 104 7 8 229 21 236 1.59e-51 185
Msa1315920 MtrunA17_Chr3g0128151 53.659 164 67 4 8 165 18 178 2.09e-50 182
Msa1315920 MtrunA17_Chr3g0128111 52.071 169 68 5 15 177 45 206 4.58e-50 172
Msa1315920 MtrunA17_Chr8g0345701 56.291 151 48 5 12 148 7 153 8.40e-47 160
Msa1315920 MtrunA17_Chr6g0481091 51.299 154 66 5 12 159 6 156 1.69e-42 151
Msa1315920 MtrunA17_Chr3g0109821 45.055 182 90 4 12 186 6 184 1.01e-41 158
Msa1315920 MtrunA17_Chr5g0400461 45.509 167 82 4 12 170 6 171 1.41e-40 149
Msa1315920 MtrunA17_Chr2g0309891 46.154 156 74 4 12 160 6 158 3.07e-38 143
Msa1315920 MtrunA17_Chr4g0054791 46.409 181 87 7 12 185 6 183 5.89e-38 141
Msa1315920 MtrunA17_Chr1g0197361 44.444 171 85 5 15 177 11 179 5.78e-37 144
Msa1315920 MtrunA17_Chr3g0139331 46.405 153 75 4 12 160 11 160 1.12e-36 139
Msa1315920 MtrunA17_Chr5g0433781 43.976 166 84 4 12 171 6 168 1.18e-36 144
Msa1315920 MtrunA17_Chr4g0018391 45.223 157 78 5 8 159 3 156 3.37e-35 134
Msa1315920 MtrunA17_Chr5g0398971 33.220 295 169 11 9 295 4 278 4.00e-35 134
Msa1315920 MtrunA17_Chr8g0364791 42.384 151 78 5 15 159 9 156 4.38e-35 136
Msa1315920 MtrunA17_Chr3g0130101 43.046 151 77 5 15 159 10 157 1.12e-34 133
Msa1315920 MtrunA17_Chr3g0091921 46.497 157 71 7 12 160 16 167 4.19e-34 130
Msa1315920 MtrunA17_Chr8g0384201 43.046 151 77 5 15 159 9 156 4.33e-34 134
Msa1315920 MtrunA17_Chr8g0385991 43.396 159 74 5 9 156 11 164 5.33e-34 128
Msa1315920 MtrunA17_Chr1g0147421 42.484 153 82 3 12 160 27 177 6.12e-34 131
Msa1315920 MtrunA17_Chr2g0318101 39.521 167 81 4 11 160 14 177 8.04e-34 131
Msa1315920 MtrunA17_Chr2g0316971 49.618 131 62 3 11 140 22 149 1.26e-33 131
Msa1315920 MtrunA17_Chr4g0060931 44.586 157 74 7 12 160 17 168 1.62e-33 130
Msa1315920 MtrunA17_Chr1g0183741 41.447 152 84 4 12 161 10 158 1.87e-33 128
Msa1315920 MtrunA17_Chr4g0056541 41.379 174 92 6 8 174 3 173 2.31e-33 130
Msa1315920 MtrunA17_Chr3g0092671 41.566 166 87 4 15 172 8 171 3.53e-33 132
Msa1315920 MtrunA17_Chr6g0484441 42.424 165 84 7 10 168 3 162 4.15e-33 128
Msa1315920 MtrunA17_Chr2g0326361 43.671 158 76 5 13 160 15 169 6.11e-33 128
Msa1315920 MtrunA17_Chr1g0201021 47.097 155 72 6 5 158 13 158 8.39e-33 132
Msa1315920 MtrunA17_Chr4g0017921 45.912 159 65 7 12 159 8 156 1.11e-32 128
Msa1315920 MtrunA17_Chr7g0263931 40.252 159 82 5 11 159 10 165 1.15e-32 127
Msa1315920 MtrunA17_Chr1g0200561 39.535 172 96 5 12 178 19 187 1.20e-32 127
Msa1315920 MtrunA17_Chr4g0047841 43.662 142 76 3 11 151 14 152 1.24e-32 127
Msa1315920 MtrunA17_Chr4g0042561 44.375 160 70 7 12 159 9 161 1.42e-32 125
Msa1315920 MtrunA17_Chr8g0361731 39.521 167 83 5 15 166 17 180 4.57e-32 127
Msa1315920 MtrunA17_Chr7g0214071 40.252 159 85 4 11 165 14 166 5.08e-32 123
Msa1315920 MtrunA17_Chr2g0309331 33.058 242 139 9 12 239 10 242 5.22e-32 125
Msa1315920 MtrunA17_Chr7g0217721 51.562 128 56 5 14 140 21 143 5.55e-32 125
Msa1315920 MtrunA17_Chr7g0217711 49.606 127 58 4 14 139 21 142 5.83e-32 121
Msa1315920 MtrunA17_Chr7g0252971 39.412 170 79 6 11 161 7 171 6.07e-32 125
Msa1315920 MtrunA17_Chr6g0453451 45.752 153 71 6 12 163 20 161 9.57e-32 124
Msa1315920 MtrunA17_Chr2g0312321 40.237 169 87 5 12 173 11 172 1.02e-31 124
Msa1315920 MtrunA17_Chr7g0261411 41.892 148 81 4 12 157 10 154 1.16e-31 123
Msa1315920 MtrunA17_Chr8g0372121 41.830 153 81 5 12 159 6 155 1.35e-31 124
Msa1315920 MtrunA17_Chr5g0417001 38.150 173 89 5 9 166 10 179 3.45e-31 124
Msa1315920 MtrunA17_Chr5g0405211 43.137 153 79 5 12 159 8 157 4.07e-31 123
Msa1315920 MtrunA17_Chr4g0076731 42.581 155 81 5 10 160 52 202 4.13e-31 125
Msa1315920 MtrunA17_Chr2g0311661 38.824 170 82 6 10 159 18 185 8.22e-31 121
Msa1315920 MtrunA17_Chr3g0124761 40.506 158 79 5 11 159 6 157 1.06e-30 120
Msa1315920 MtrunA17_Chr1g0197351 42.675 157 75 4 15 159 45 198 1.06e-30 124
Msa1315920 MtrunA17_Chr6g0461661 43.846 130 69 3 12 140 18 144 1.07e-30 123
Msa1315920 MtrunA17_Chr6g0453131 40.719 167 80 6 9 160 12 174 1.14e-30 123
Msa1315920 MtrunA17_Chr2g0311651 39.227 181 88 6 10 170 19 197 1.22e-30 121
Msa1315920 MtrunA17_Chr3g0130731 41.250 160 79 5 12 162 7 160 1.26e-30 120
Msa1315920 MtrunA17_Chr3g0144271 45.736 129 67 2 12 139 23 149 1.30e-30 123
Msa1315920 MtrunA17_Chr8g0384721 33.945 218 110 9 12 209 7 210 1.31e-30 120
Msa1315920 MtrunA17_Chr4g0026141 39.521 167 82 5 1 156 1 159 1.37e-30 119
Msa1315920 MtrunA17_Chr5g0417791 41.772 158 77 7 12 159 3 155 2.32e-30 119
Msa1315920 MtrunA17_Chr7g0253011 46.667 135 65 5 8 139 14 144 2.48e-30 122
Msa1315920 MtrunA17_Chr2g0321741 44.286 140 72 4 23 161 2 136 1.12e-29 119
Msa1315920 MtrunA17_Chr8g0346001 38.830 188 93 8 11 182 14 195 7.80e-29 118
Msa1315920 MtrunA17_Chr2g0318081 35.294 204 112 8 12 206 16 208 9.37e-29 117
Msa1315920 MtrunA17_Chr4g0038751 41.892 148 81 4 15 160 18 162 2.28e-28 114
Msa1315920 MtrunA17_Chr3g0131911 37.500 168 86 5 12 165 14 176 3.63e-28 112
Msa1315920 MtrunA17_Chr8g0359921 34.862 218 124 9 12 218 14 224 9.54e-28 113
Msa1315920 MtrunA17_Chr7g0266701 36.905 168 89 6 9 161 1 166 1.52e-27 111
Msa1315920 MtrunA17_Chr5g0442771 31.481 270 146 10 15 252 21 283 3.81e-27 111
Msa1315920 MtrunA17_Chr2g0321631 39.103 156 82 5 13 156 5 159 4.66e-27 109
Msa1315920 MtrunA17_Chr8g0384351 33.333 165 89 6 12 175 10 154 1.30e-19 86.7
Msa1315920 MtrunA17_Chr4g0050701 28.409 176 99 7 12 173 11 173 3.34e-19 85.9
Msa1315920 MtrunA17_Chr3g0113001 27.586 290 151 12 63 342 13 253 4.77e-17 82.0
Msa1315920 MtrunA17_Chr3g0130321 31.250 176 96 4 12 171 7 173 2.16e-16 78.2
Msa1315920 MtrunA17_Chr7g0251651 30.636 173 99 7 12 174 18 179 1.06e-15 75.9
Msa1315920 MtrunA17_Chr7g0243371 38.095 84 50 2 58 139 6 89 3.58e-14 68.9
Msa1315920 MtrunA17_Chr3g0113031 39.423 104 51 5 78 171 3 104 5.12e-13 69.3
Msa1315920 MtrunA17_Chr7g0251661 30.827 133 78 5 12 139 10 133 1.63e-12 65.5
Msa1315920 MtrunA17_Chr7g0274971 25.472 212 129 9 18 213 11 209 1.19e-11 64.3
Msa1315920 MtrunA17_Chr3g0113011 60.417 48 18 1 13 60 20 66 6.81e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315920 AT4G01550.1 51.724 174 79 3 14 185 6 176 1.53e-52 185
Msa1315920 AT4G35580.2 52.469 162 68 4 8 163 5 163 3.20e-51 183
Msa1315920 AT4G35580.3 52.469 162 68 4 8 163 5 163 3.41e-51 183
Msa1315920 AT4G35580.1 52.469 162 68 4 8 163 5 163 3.72e-51 182
Msa1315920 AT3G49530.2 51.235 162 67 5 8 161 9 166 2.40e-49 175
Msa1315920 AT3G49530.1 51.235 162 67 5 8 161 9 166 7.14e-49 175
Msa1315920 AT1G33060.2 53.797 158 64 4 8 159 20 174 1.03e-48 178
Msa1315920 AT1G33060.1 53.797 158 64 4 8 159 20 174 1.06e-48 178
Msa1315920 AT5G24590.2 51.875 160 69 4 8 161 9 166 5.81e-48 172
Msa1315920 AT4G01520.1 37.991 229 121 7 13 228 5 225 3.62e-43 155
Msa1315920 AT4G17980.1 48.101 158 73 3 12 161 6 162 3.44e-42 152
Msa1315920 AT4G17980.2 48.101 158 73 3 12 161 6 162 9.55e-42 151
Msa1315920 AT4G01540.4 38.158 228 120 7 14 228 6 225 1.33e-41 154
Msa1315920 AT4G01540.2 38.158 228 120 7 14 228 6 225 1.89e-41 154
Msa1315920 AT4G01540.3 38.158 228 120 7 14 228 6 225 2.52e-41 154
Msa1315920 AT4G01540.1 38.158 228 120 7 14 228 6 225 3.74e-41 154
Msa1315920 AT3G10490.1 48.026 152 69 4 15 159 30 178 1.63e-40 146
Msa1315920 AT5G17260.1 49.032 155 69 4 12 159 6 157 1.80e-40 152
Msa1315920 AT3G17730.1 45.251 179 79 6 12 184 6 171 3.36e-40 145
Msa1315920 AT3G10480.1 47.368 152 70 4 15 159 30 178 1.17e-39 149
Msa1315920 AT3G10480.2 47.682 151 70 4 15 159 30 177 1.20e-39 149
Msa1315920 AT3G10490.2 48.026 152 69 4 15 159 30 178 2.29e-39 149
Msa1315920 AT5G46590.1 48.750 160 73 5 12 164 6 163 9.17e-39 143
Msa1315920 AT1G65910.1 49.032 155 70 4 12 160 6 157 2.09e-38 149
Msa1315920 AT3G03200.1 45.294 170 81 5 12 172 6 172 6.13e-38 145
Msa1315920 AT1G02230.1 45.098 153 79 4 13 162 4 154 1.85e-36 139
Msa1315920 AT1G32510.1 45.029 171 73 6 12 166 6 171 2.96e-36 136
Msa1315920 AT5G61430.1 46.497 157 71 7 12 160 16 167 6.86e-36 137
Msa1315920 AT5G46590.2 51.538 130 60 3 12 140 6 133 7.02e-36 135
Msa1315920 AT2G27300.1 39.086 197 102 7 1 193 11 193 8.46e-36 136
Msa1315920 AT2G24430.2 44.516 155 78 5 12 161 16 167 1.95e-35 135
Msa1315920 AT2G24430.1 44.516 155 78 5 12 161 16 167 1.95e-35 135
Msa1315920 AT1G12260.2 43.312 157 81 5 8 159 3 156 1.18e-34 133
Msa1315920 AT1G54330.1 47.682 151 73 4 12 159 6 153 1.74e-34 132
Msa1315920 AT3G44290.2 43.210 162 77 6 1 161 11 158 2.05e-34 129
Msa1315920 AT1G12260.1 43.312 157 81 5 8 159 3 156 2.51e-34 134
Msa1315920 AT5G04410.1 43.353 173 84 6 15 177 12 180 2.57e-34 136
Msa1315920 AT5G39610.1 44.872 156 73 6 12 159 20 170 2.92e-34 130
Msa1315920 AT5G39820.1 48.551 138 67 3 10 146 18 152 3.53e-34 132
Msa1315920 AT5G62380.2 36.364 231 125 8 8 228 3 221 5.27e-34 132
Msa1315920 AT5G62380.1 36.364 231 125 8 8 228 3 221 5.27e-34 132
Msa1315920 AT5G07680.2 45.570 158 71 7 12 160 3 154 6.16e-34 130
Msa1315920 AT5G07680.1 45.570 158 71 7 12 160 17 168 7.06e-34 131
Msa1315920 AT1G69490.1 42.405 158 76 6 12 159 9 161 7.68e-34 129
Msa1315920 AT3G10480.3 40.000 185 68 6 15 159 30 211 1.03e-33 134
Msa1315920 AT3G10500.1 47.368 152 71 5 15 160 12 160 1.16e-33 134
Msa1315920 AT3G15170.1 45.223 157 75 5 12 160 20 173 1.22e-33 130
Msa1315920 AT1G62700.1 39.891 183 99 6 8 185 3 179 1.65e-33 131
Msa1315920 AT1G62700.2 39.891 183 99 6 8 185 3 179 1.65e-33 131
Msa1315920 AT3G44290.1 43.210 162 77 6 1 161 11 158 2.32e-33 129
Msa1315920 AT1G33280.1 46.053 152 75 5 12 159 8 156 3.82e-33 128
Msa1315920 AT5G22290.1 33.735 249 141 9 2 247 19 246 5.00e-33 129
Msa1315920 AT3G04060.1 42.308 156 78 6 12 159 20 171 5.37e-33 129
Msa1315920 AT1G76420.1 42.038 157 77 5 12 160 22 172 8.99e-33 128
Msa1315920 AT5G53950.1 49.231 130 62 3 11 139 16 142 9.48e-33 129
Msa1315920 AT1G01720.1 42.236 161 77 6 9 159 4 158 1.10e-32 126
Msa1315920 AT3G18400.1 42.593 162 81 6 10 164 3 159 1.28e-32 127
Msa1315920 AT3G29035.1 49.231 130 60 5 12 140 24 148 1.69e-32 127
Msa1315920 AT1G26870.1 42.857 161 74 5 15 160 19 176 1.84e-32 129
Msa1315920 AT5G66300.1 42.857 154 79 5 12 159 12 162 2.51e-32 125
Msa1315920 AT1G56010.2 36.453 203 98 5 12 187 19 217 3.40e-32 126
Msa1315920 AT2G18060.3 40.113 177 94 6 12 179 9 182 5.17e-32 126
Msa1315920 AT2G18060.1 40.113 177 94 6 12 179 9 182 5.17e-32 126
Msa1315920 AT5G08790.1 41.250 160 77 6 11 159 6 159 5.97e-32 124
Msa1315920 AT1G34190.1 46.753 154 69 5 15 160 19 167 6.22e-32 129
Msa1315920 AT1G79580.3 45.395 152 77 5 12 159 17 166 7.22e-32 126
Msa1315920 AT1G79580.5 45.395 152 77 5 12 159 17 166 7.22e-32 126
Msa1315920 AT1G79580.4 45.395 152 77 5 12 159 17 166 7.22e-32 126
Msa1315920 AT1G79580.2 45.395 152 77 5 12 159 17 166 7.22e-32 126
Msa1315920 AT1G79580.1 45.395 152 77 5 12 159 17 166 7.22e-32 126
Msa1315920 AT1G71930.2 43.137 153 79 5 12 159 9 158 8.22e-32 125
Msa1315920 AT1G71930.1 43.137 153 79 5 12 159 9 158 8.22e-32 125
Msa1315920 AT1G61110.1 40.936 171 79 6 7 159 11 177 1.19e-31 124
Msa1315920 AT3G04070.2 35.160 219 114 7 12 214 10 216 1.37e-31 125
Msa1315920 AT3G15510.1 39.062 192 91 7 16 184 21 209 1.50e-31 125
Msa1315920 AT1G34180.3 46.053 152 73 4 15 160 19 167 3.87e-31 125
Msa1315920 AT4G36160.1 39.655 174 92 6 12 175 10 180 5.07e-31 124
Msa1315920 AT4G36160.3 39.655 174 92 6 12 175 10 180 5.07e-31 124
Msa1315920 AT5G18270.2 41.667 156 79 5 12 159 21 172 5.44e-31 123
Msa1315920 AT4G27410.2 35.545 211 109 9 12 210 14 209 5.89e-31 122
Msa1315920 AT4G36160.2 36.449 214 106 9 12 199 14 223 6.04e-31 124
Msa1315920 AT2G02450.1 42.953 149 77 5 15 159 54 198 6.26e-31 124
Msa1315920 AT3G15500.1 35.321 218 122 9 12 220 14 221 6.63e-31 122
Msa1315920 AT2G02450.2 42.953 149 77 5 15 159 54 198 6.85e-31 124
Msa1315920 AT4G10350.1 42.604 169 86 6 12 172 9 174 8.28e-31 122
Msa1315920 AT1G34180.1 46.053 152 73 4 15 160 19 167 1.12e-30 125
Msa1315920 AT5G09330.5 43.709 151 76 4 15 159 9 156 2.17e-30 124
Msa1315920 AT5G09330.2 43.709 151 76 4 15 159 9 156 2.17e-30 124
Msa1315920 AT5G09330.4 43.709 151 76 4 15 159 9 156 2.17e-30 124
Msa1315920 AT5G09330.3 43.709 151 76 4 15 159 9 156 2.17e-30 124
Msa1315920 AT5G09330.1 43.709 151 76 4 15 159 9 156 2.17e-30 124
Msa1315920 AT5G18270.1 41.026 156 80 5 12 159 21 172 2.21e-30 121
Msa1315920 AT2G17040.1 40.741 162 85 5 15 168 9 167 2.39e-30 120
Msa1315920 AT5G13180.1 39.610 154 82 4 11 159 13 160 3.27e-30 119
Msa1315920 AT5G04395.1 42.254 142 68 4 12 140 28 168 4.53e-30 116
Msa1315920 AT5G22380.1 41.139 158 81 5 10 156 3 159 8.93e-30 117
Msa1315920 AT3G61910.1 39.645 169 79 6 11 159 10 175 9.65e-30 119
Msa1315920 AT1G52890.1 37.912 182 98 6 6 179 8 182 1.02e-29 119
Msa1315920 AT5G64060.1 41.558 154 75 5 15 159 9 156 1.51e-29 119
Msa1315920 AT3G04070.1 44.697 132 66 4 12 139 10 138 1.63e-29 119
Msa1315920 AT1G02250.1 42.208 154 84 4 13 163 4 155 1.91e-29 119
Msa1315920 AT5G63790.1 39.375 160 80 6 11 159 49 202 8.15e-29 116
Msa1315920 AT4G27410.3 33.628 226 110 10 12 210 14 226 9.72e-29 116
Msa1315920 AT5G63790.2 39.375 160 80 6 11 159 59 212 1.07e-28 116
Msa1315920 AT2G33480.2 40.645 155 80 5 11 161 14 160 1.11e-28 115
Msa1315920 AT2G33480.1 40.645 155 78 5 11 159 14 160 1.58e-28 114
Msa1315920 AT2G43000.1 41.176 153 78 6 15 160 21 168 1.89e-28 114
Msa1315920 AT1G77450.1 38.095 168 89 5 11 169 9 170 2.06e-28 114
Msa1315920 AT1G01010.1 42.949 156 79 4 14 161 5 158 2.22e-28 117
Msa1315920 AT4G28530.1 37.725 167 85 5 12 161 10 174 3.25e-28 115
Msa1315920 AT3G04420.2 40.000 170 98 4 13 180 4 171 4.01e-28 114
Msa1315920 AT3G12977.1 36.957 184 96 7 12 184 18 192 5.31e-28 113
Msa1315920 AT3G12910.1 29.964 277 157 9 15 262 24 292 5.36e-28 114
Msa1315920 AT1G34180.4 42.683 164 73 5 15 160 19 179 5.50e-28 117
Msa1315920 AT3G04420.1 41.722 151 84 4 13 161 4 152 5.57e-28 115
Msa1315920 AT1G34180.2 42.683 164 73 5 15 160 19 179 1.29e-27 117
Msa1315920 AT2G46770.1 38.690 168 80 6 12 159 16 180 1.48e-27 114
Msa1315920 AT1G02220.1 42.857 147 79 4 12 157 3 145 4.63e-27 113
Msa1315920 AT1G32770.1 40.120 167 76 7 12 159 16 177 7.63e-27 112
Msa1315920 AT3G44350.2 32.967 182 109 6 10 179 3 183 1.17e-26 108
Msa1315920 AT1G52880.1 35.377 212 112 7 16 211 21 223 2.13e-26 110
Msa1315920 AT3G44350.1 37.594 133 79 3 10 139 3 134 5.31e-25 101
Msa1315920 AT1G32870.1 44.156 154 73 6 15 160 13 161 5.52e-24 105
Msa1315920 AT1G32870.2 44.156 154 73 6 15 160 13 161 5.91e-24 105
Msa1315920 AT1G32870.3 44.156 154 73 6 15 160 49 197 8.41e-24 105
Msa1315920 AT3G04430.1 37.037 135 69 5 18 140 6 136 1.28e-20 90.5
Msa1315920 AT5G64530.2 36.641 131 65 6 11 139 2 116 1.15e-18 83.6
Msa1315920 AT5G64530.1 36.154 130 65 6 12 139 3 116 1.86e-18 84.0
Msa1315920 AT1G56010.1 34.483 145 66 4 70 187 8 150 3.08e-18 85.1
Msa1315920 AT5G61430.2 41.509 106 52 5 63 160 1 104 3.63e-18 85.1
Msa1315920 AT3G12977.2 37.600 125 63 5 70 184 20 139 1.28e-17 82.4
Msa1315920 AT4G10350.2 38.655 119 64 4 61 172 11 127 9.24e-17 81.3
Msa1315920 AT4G28530.2 41.284 109 47 3 12 105 10 116 9.76e-17 81.6
Msa1315920 AT3G10490.4 46.250 80 34 3 87 159 1 78 1.97e-15 78.2
Msa1315920 AT3G10490.3 46.250 80 34 3 87 159 1 78 1.97e-15 78.2
Msa1315920 AT3G56530.1 32.000 150 94 5 12 156 52 198 2.37e-13 71.6
Msa1315920 AT2G33480.3 36.735 98 54 3 68 159 8 103 1.10e-12 67.8
Msa1315920 AT3G55210.1 30.723 166 97 9 6 156 4 166 5.57e-12 67.0
Msa1315920 AT2G18060.2 39.362 94 47 4 94 179 3 94 8.47e-12 66.2
Msa1315920 AT5G14000.2 30.357 112 71 3 12 123 15 119 2.06e-11 62.8

Find 105 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATTCCATATTTATTTC+TGG 0.145339 8_4:-15501466 None:intergenic
ATTGATTCCATATTTATTTC+TGG 0.145339 8_4:-15501923 None:intergenic
AGTACCTTTCGAGATGATTT+TGG 0.182200 8_4:+15502677 Msa1315920:CDS
AGGGGTAGCAATAATATTAT+TGG 0.231520 8_4:+15500579 Msa1315920:CDS
GCATCGTGAATTGGCGAGTT+TGG 0.245634 8_4:-15502010 None:intergenic
GCATCGTGAATTGGAGAGTT+TGG 0.259585 8_4:-15501553 None:intergenic
AAGTTTAATTCTAACATATT+AGG 0.265409 8_4:+15502934 Msa1315920:three_prime_UTR
AAATATGGAATCAATATTTC+AGG 0.281347 8_4:+15501474 Msa1315920:CDS
AAATATGGAATCAATATTTC+AGG 0.281347 8_4:+15501931 Msa1315920:CDS
ATAATATCATAGGCTACTTT+TGG 0.286296 8_4:-15499987 None:intergenic
AATGATTATTGACGGGGATT+TGG 0.293193 8_4:+15501651 Msa1315920:CDS
AATGATTATTGACGGGGATT+TGG 0.293193 8_4:+15502108 Msa1315920:CDS
GATGTTGTCATTTCTAAAAT+AGG 0.297612 8_4:-15501575 None:intergenic
GATGTTGTCCTTTCTAAAAT+AGG 0.298866 8_4:-15502032 None:intergenic
TACTATAGTGGTCGTGTTCC+TGG 0.304206 8_4:+15500621 Msa1315920:CDS
AAAACTAAAATTGAGGAATA+AGG 0.314591 8_4:-15503075 None:intergenic
CAAAGAGCAAGAGGTTTAAA+AGG 0.322782 8_4:+15500502 Msa1315920:CDS
TTTAAAAGGACAACTAATAA+TGG 0.327657 8_4:+15500516 Msa1315920:CDS
CCTTAGGAACAGTTGTAAAA+TGG 0.330273 8_4:+15503021 Msa1315920:three_prime_UTR
GGGGTAGCAATAATATTATT+GGG 0.331309 8_4:+15500580 Msa1315920:CDS
CTAAAATAGGCATCGTGAAT+TGG 0.331352 8_4:-15502019 None:intergenic
TTCAACTGCAGATATATCTT+TGG 0.332842 8_4:+15502724 Msa1315920:CDS
TGGAAAGGATCGAAAGATTA+AGG 0.337849 8_4:+15500554 Msa1315920:CDS
ACCACTAAGCTAACACTTCA+TGG 0.352118 8_4:-15502957 None:intergenic
GTCAAGAGTCGGAGGAAATA+AGG 0.354940 8_4:-15500183 None:intergenic
CTAAAATAGGCATCGTGAAT+TGG 0.355860 8_4:-15501562 None:intergenic
CATCGTGAATTGGCGAGTTT+GGG 0.364030 8_4:-15502009 None:intergenic
TCAACGCATGGTAATGTTCC+TGG 0.366029 8_4:+15502602 Msa1315920:CDS
TACTTTGCCAGAAATAAATA+TGG 0.372071 8_4:+15501459 Msa1315920:CDS
TACTTTGCCAGAAATAAATA+TGG 0.372071 8_4:+15501916 Msa1315920:CDS
TCCTCTTCAATGGTTTCAAA+TGG 0.379573 8_4:-15501610 None:intergenic
TCCTCTTCAATGGTTTCAAA+TGG 0.379573 8_4:-15502067 None:intergenic
GGATCGAAAGATTAAGGTTA+GGG 0.381317 8_4:+15500560 Msa1315920:CDS
TTTCTTGAACATCCTAGTTC+AGG 0.382346 8_4:+15502551 Msa1315920:CDS
GATAGAAAACAGGTGCTTCC+AGG 0.383330 8_4:-15502620 None:intergenic
ATGAATCATTTGATCAAGAT+AGG 0.394555 8_4:-15502904 None:intergenic
TTTGCATACTTATAATCAAT+AGG 0.394789 8_4:-15500483 None:intergenic
TTCCTGGTGTTAACAGCAGC+TGG 0.401870 8_4:+15500637 Msa1315920:CDS
GAACTTATCTTCCTCTTCAA+TGG 0.404183 8_4:-15501620 None:intergenic
GAACTTATCTTCCTCTTCAA+TGG 0.404183 8_4:-15502077 None:intergenic
CATCGTGAATTGGAGAGTTT+GGG 0.404562 8_4:-15501552 None:intergenic
GAGGTTGATCATAATATCAT+AGG 0.407299 8_4:-15499997 None:intergenic
AGAGAGATATGAAGAGAAAG+TGG 0.412084 8_4:-15500088 None:intergenic
TACTTGCATACATCAACTTC+AGG 0.414938 8_4:-15500311 None:intergenic
AAGACTCTTGTTTACTATAG+TGG 0.415807 8_4:+15500609 Msa1315920:CDS
AACATGAAGATGGCTGGTCT+TGG 0.420080 8_4:-15502815 None:intergenic
CCAGTCCGAGTCGTTGAAAA+TGG 0.421990 8_4:+15501687 Msa1315920:CDS
CCAGTCCGAGTCGTTGAAAA+TGG 0.421990 8_4:+15502144 Msa1315920:CDS
GCCATGAAGTGTTAGCTTAG+TGG 0.422146 8_4:+15502956 Msa1315920:three_prime_UTR
TGGCTGGTCTTGGATGATAC+TGG 0.422975 8_4:-15502805 None:intergenic
TTGAAAAGAGCTGCTTTAAG+AGG 0.426996 8_4:+15502836 Msa1315920:CDS
CGATAGTTACATTCTTAATA+CGG 0.429588 8_4:+15503110 Msa1315920:three_prime_UTR
TCATTATTAGTTCAGTTGCT+TGG 0.431816 8_4:-15502876 None:intergenic
CGATATTCTTGATACTTCAA+TGG 0.439525 8_4:+15502526 Msa1315920:CDS
AGGATCGAAAGATTAAGGTT+AGG 0.440394 8_4:+15500559 Msa1315920:CDS
AGACATAGTTCTAATTCCTT+AGG 0.443594 8_4:+15503005 Msa1315920:three_prime_UTR
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_4:+15501697 Msa1315920:CDS
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_4:+15502154 Msa1315920:CDS
ATTCTTTAAAGATAGAAAAC+AGG 0.461828 8_4:-15502630 None:intergenic
GTCAGTTCAATGATTATTGA+CGG 0.463736 8_4:+15501643 Msa1315920:CDS
GTCAGTTCAATGATTATTGA+CGG 0.463736 8_4:+15502100 Msa1315920:CDS
ACTCTTGACCATGTTCCTGT+TGG 0.471228 8_4:+15500197 Msa1315920:CDS
CATATTGTGAACTTCTGATA+AGG 0.477364 8_4:+15503133 Msa1315920:three_prime_UTR
TTCAATCTCTGAAAATGAGC+AGG 0.480194 8_4:+15501519 Msa1315920:CDS
TTCAATCTCTGAAAATGAGC+AGG 0.480194 8_4:+15501976 Msa1315920:CDS
TCAGTTCAATGATTATTGAC+GGG 0.480425 8_4:+15501644 Msa1315920:CDS
TCAGTTCAATGATTATTGAC+GGG 0.480425 8_4:+15502101 Msa1315920:CDS
CTTACAAGCTCTTCATCTGT+TGG 0.488308 8_4:-15500233 None:intergenic
GAAATTATCATTAATTAAAG+TGG 0.491758 8_4:-15503053 None:intergenic
GCAGAGTATTCGCCTGAACT+AGG 0.495091 8_4:-15502563 None:intergenic
TCGGAACTCATGTGTCTACT+TGG 0.499283 8_4:-15501278 None:intergenic
GGTCTGAATCTGAATCCAAC+AGG 0.502719 8_4:-15500212 None:intergenic
TCCATTTGAAACCATTGAAG+AGG 0.526651 8_4:+15501609 Msa1315920:CDS
TCCATTTGAAACCATTGAAG+AGG 0.526651 8_4:+15502066 Msa1315920:CDS
GATGCATATATATGTGATGA+AGG 0.526843 8_4:+15501251 Msa1315920:CDS
ACAAACCTTGTCATCTTCAA+AGG 0.536374 8_4:-15500685 None:intergenic
GGAATCAATATTTCAGGCAC+AGG 0.539733 8_4:+15501480 Msa1315920:CDS
GGAATCAATATTTCAGGCAC+AGG 0.539733 8_4:+15501937 Msa1315920:CDS
TATGAACCTTGGGAGTTACC+AGG 0.553928 8_4:+15500332 Msa1315920:CDS
TGTATGCAAGTATGAACCTT+GGG 0.557609 8_4:+15500322 Msa1315920:CDS
AGGTATAACATTGTTGACAA+TGG 0.563065 8_4:-15500291 None:intergenic
GTGAATTGGCGAGTTTGGGA+TGG 0.564115 8_4:-15502005 None:intergenic
ATTAAGAATGTAACTATCGT+TGG 0.564747 8_4:-15503106 None:intergenic
ATAAGTATGCAAAGAGCAAG+AGG 0.565864 8_4:+15500493 Msa1315920:CDS
TGCTGAAGTAGTCTCTATGC+CGG 0.566096 8_4:+15501735 Msa1315920:CDS
AATTAGAACTATGTCTCTTG+AGG 0.567105 8_4:-15502998 None:intergenic
TCCTGGTGTTAACAGCAGCT+GGG 0.577857 8_4:+15500638 Msa1315920:CDS
CAGTTCAATGATTATTGACG+GGG 0.578711 8_4:+15501645 Msa1315920:CDS
CAGTTCAATGATTATTGACG+GGG 0.578711 8_4:+15502102 Msa1315920:CDS
ATCTGCAGTTGAATCACAAG+AGG 0.597794 8_4:-15502714 None:intergenic
ATGCATATATATGTGATGAA+GGG 0.603466 8_4:+15501252 Msa1315920:CDS
TAAAATCAGATGATCCAGAA+TGG 0.605424 8_4:+15500448 Msa1315920:CDS
TACCACCTTTGAAGATGACA+AGG 0.610149 8_4:+15500680 Msa1315920:CDS
ATCTGAATCCAACAGGAACA+TGG 0.616076 8_4:-15500205 None:intergenic
ACCCAGCTGCTGTTAACACC+AGG 0.624004 8_4:-15500639 None:intergenic
AACCTTGTCATCTTCAAAGG+TGG 0.630537 8_4:-15500682 None:intergenic
GTGAATTGGAGAGTTTGGGA+TGG 0.634986 8_4:-15501548 None:intergenic
ACAGGAACATGGTCAAGAGT+CGG 0.636129 8_4:-15500194 None:intergenic
TGCATATATATGTGATGAAG+GGG 0.640466 8_4:+15501253 Msa1315920:CDS
AAATTGTTGAAATCAACGCA+TGG 0.648209 8_4:+15502590 Msa1315920:CDS
TGCTGAAGTAGTCTCTACGC+CGG 0.650251 8_4:+15502192 Msa1315920:CDS
GCTGCTTTAAGAGGATCTTG+AGG 0.651591 8_4:+15502845 Msa1315920:CDS
ATGTATGCAAGTATGAACCT+TGG 0.657459 8_4:+15500321 Msa1315920:CDS
GGAACATGGTCAAGAGTCGG+AGG 0.664688 8_4:-15500191 None:intergenic
GATCGAAAGATTAAGGTTAG+GGG 0.678144 8_4:+15500561 Msa1315920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTGAAATTTGTTT+TGG - chr8_4:15500132-15500151 None:intergenic 15.0%
!!! TTTTATGAGAAAATAATGAT+GGG - chr8_4:15500382-15500401 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGA+TGG - chr8_4:15500383-15500402 None:intergenic 15.0%
!! AAAGATGAAAAACATTAAAA+AGG - chr8_4:15500411-15500430 None:intergenic 15.0%
!! ATTTCTATTATCATTTATCA+AGG - chr8_4:15501354-15501373 None:intergenic 15.0%
!!! AGAACTTATATTTGTTTTAT+AGG + chr8_4:15501429-15501448 Msa1315920:intron 15.0%
!! ATTTCTATTATCATTTATCA+AGG - chr8_4:15501354-15501373 None:intergenic 15.0%
!!! AGAACTTATATTTGTTTTAT+AGG + chr8_4:15501429-15501448 Msa1315920:intron 15.0%
!! TTTGAACAATATATATTTAC+CGG - chr8_4:15502214-15502233 None:intergenic 15.0%
!! AAGTTTAATTCTAACATATT+AGG + chr8_4:15502934-15502953 Msa1315920:three_prime_UTR 15.0%
!! GAAATTATCATTAATTAAAG+TGG - chr8_4:15503056-15503075 None:intergenic 15.0%
!! AACAAAAACAAAATATAGGA+AGG - chr8_4:15499958-15499977 None:intergenic 20.0%
!!! TTGTTTGTTTTTTTTTTACC+TGG - chr8_4:15500353-15500372 None:intergenic 20.0%
!! TTTATGAGAAAATAATGATG+GGG - chr8_4:15500381-15500400 None:intergenic 20.0%
!! TTTGCATACTTATAATCAAT+AGG - chr8_4:15500486-15500505 None:intergenic 20.0%
!! TTTAAAAGGACAACTAATAA+TGG + chr8_4:15500516-15500535 Msa1315920:CDS 20.0%
!!! ACTATTTTCCTATATATGAT+TGG + chr8_4:15500799-15500818 Msa1315920:intron 20.0%
!! TATGATACCAAAAGAAAAAA+GGG - chr8_4:15500880-15500899 None:intergenic 20.0%
!! ATATGATACCAAAAGAAAAA+AGG - chr8_4:15500881-15500900 None:intergenic 20.0%
!! AAACACTCTTTGTAATTAAA+AGG - chr8_4:15500969-15500988 None:intergenic 20.0%
!!! TTCAGTTTTTGAATGTTAAT+AGG + chr8_4:15501058-15501077 Msa1315920:intron 20.0%
!!! CAAAAGTTTCTTTATTTTCA+TGG - chr8_4:15501304-15501323 None:intergenic 20.0%
!!! GAAAATAAAGAAACTTTTGA+AGG + chr8_4:15501305-15501324 Msa1315920:CDS 20.0%
!!! ACTTATATTTGTTTTATAGG+TGG + chr8_4:15501432-15501451 Msa1315920:intron 20.0%
!!! CTTATATTTGTTTTATAGGT+GGG + chr8_4:15501433-15501452 Msa1315920:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_4:15501469-15501488 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_4:15501474-15501493 Msa1315920:CDS 20.0%
!!! ACTTATATTTGTTTTATAGG+TGG + chr8_4:15501432-15501451 Msa1315920:intron 20.0%
!!! CTTATATTTGTTTTATAGGT+GGG + chr8_4:15501433-15501452 Msa1315920:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_4:15501469-15501488 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_4:15501474-15501493 Msa1315920:CDS 20.0%
!!! ATAAATTGTGAAAAAGTACT+TGG + chr8_4:15502333-15502352 Msa1315920:intron 20.0%
!! AAGAAAATAAGCATTATGAA+AGG - chr8_4:15502487-15502506 None:intergenic 20.0%
!!! ATTCTTTAAAGATAGAAAAC+AGG - chr8_4:15502633-15502652 None:intergenic 20.0%
!!! TGTTTTCTATCTTTAAAGAA+TGG + chr8_4:15502632-15502651 Msa1315920:CDS 20.0%
!! AAAACTAAAATTGAGGAATA+AGG - chr8_4:15503078-15503097 None:intergenic 20.0%
!! ATGTTCAAAAACTAAAATTG+AGG - chr8_4:15503085-15503104 None:intergenic 20.0%
! GCTGAACAAAAACAAAATAT+AGG - chr8_4:15499962-15499981 None:intergenic 25.0%
!!! ATAATATCATAGGCTACTTT+TGG - chr8_4:15499990-15500009 None:intergenic 25.0%
!!! GGTTTGTTTTGTTACAATAA+AGG + chr8_4:15500701-15500720 Msa1315920:intron 25.0%
!! TTTGGTATCATATTTGTTAG+AGG + chr8_4:15500888-15500907 Msa1315920:intron 25.0%
! AAAACACAAATCACAAACAA+TGG + chr8_4:15500936-15500955 Msa1315920:intron 25.0%
! ATGCATATATATGTGATGAA+GGG + chr8_4:15501252-15501271 Msa1315920:CDS 25.0%
!!! AGTTTCTTTATTTTCATGGT+CGG - chr8_4:15501300-15501319 None:intergenic 25.0%
!! AAATTTTGCGAACAAAGTTT+TGG + chr8_4:15501370-15501389 Msa1315920:intron 25.0%
! TACTTTGCCAGAAATAAATA+TGG + chr8_4:15501459-15501478 Msa1315920:CDS 25.0%
!!! GATGTTGTCATTTCTAAAAT+AGG - chr8_4:15501578-15501597 None:intergenic 25.0%
! CAGGAACAATATATATTTAC+CGG - chr8_4:15501757-15501776 None:intergenic 25.0%
! TATATATTGTTCCTGATGTA+AGG + chr8_4:15501762-15501781 Msa1315920:intron 25.0%
!! AAATTTTGCCAACAAAGTTT+TGG + chr8_4:15501827-15501846 Msa1315920:intron 25.0%
! TACTTTGCCAGAAATAAATA+TGG + chr8_4:15501459-15501478 Msa1315920:CDS 25.0%
! ATACACACTTTCATATCATT+TGG - chr8_4:15502239-15502258 None:intergenic 25.0%
! ATGAATCATTTGATCAAGAT+AGG - chr8_4:15502907-15502926 None:intergenic 25.0%
! ATTAAGAATGTAACTATCGT+TGG - chr8_4:15503109-15503128 None:intergenic 25.0%
! CGATAGTTACATTCTTAATA+CGG + chr8_4:15503110-15503129 Msa1315920:three_prime_UTR 25.0%
! GAGGTTGATCATAATATCAT+AGG - chr8_4:15500000-15500019 None:intergenic 30.0%
!!! GTAACTTGTTTTTGAGATAG+TGG - chr8_4:15500259-15500278 None:intergenic 30.0%
AGGTATAACATTGTTGACAA+TGG - chr8_4:15500294-15500313 None:intergenic 30.0%
TAAAATCAGATGATCCAGAA+TGG + chr8_4:15500448-15500467 Msa1315920:CDS 30.0%
! GGACAACTAATAATGGTTTT+TGG + chr8_4:15500523-15500542 Msa1315920:CDS 30.0%
AGGGGTAGCAATAATATTAT+TGG + chr8_4:15500579-15500598 Msa1315920:CDS 30.0%
GGGGTAGCAATAATATTATT+GGG + chr8_4:15500580-15500599 Msa1315920:CDS 30.0%
! AAGACTCTTGTTTACTATAG+TGG + chr8_4:15500609-15500628 Msa1315920:CDS 30.0%
GACAAAACATGAGTTTATTC+AGG + chr8_4:15500772-15500791 Msa1315920:intron 30.0%
!!! CTTTGAACCCTTTTTTCTTT+TGG + chr8_4:15500870-15500889 Msa1315920:intron 30.0%
AAAAGACTAAAAGAGTGACT+TGG - chr8_4:15501039-15501058 None:intergenic 30.0%
! TATCATCCGAAATTTTGTAG+CGG + chr8_4:15501171-15501190 Msa1315920:intron 30.0%
AAAAGTCCGCTACAAAATTT+CGG - chr8_4:15501180-15501199 None:intergenic 30.0%
GATGCATATATATGTGATGA+AGG + chr8_4:15501251-15501270 Msa1315920:CDS 30.0%
TGCATATATATGTGATGAAG+GGG + chr8_4:15501253-15501272 Msa1315920:CDS 30.0%
GTCAGTTCAATGATTATTGA+CGG + chr8_4:15501643-15501662 Msa1315920:CDS 30.0%
TCAGTTCAATGATTATTGAC+GGG + chr8_4:15501644-15501663 Msa1315920:CDS 30.0%
!! CTTTAAAGCCAAAACTTTGT+TGG - chr8_4:15501381-15501400 None:intergenic 30.0%
!! GATGTTGTCCTTTCTAAAAT+AGG - chr8_4:15502035-15502054 None:intergenic 30.0%
GTCAGTTCAATGATTATTGA+CGG + chr8_4:15501643-15501662 Msa1315920:CDS 30.0%
TCAGTTCAATGATTATTGAC+GGG + chr8_4:15501644-15501663 Msa1315920:CDS 30.0%
TTGGATGAAATGAAATGTCT+AGG + chr8_4:15502352-15502371 Msa1315920:intron 30.0%
CATTCTAGTAGCATTTCAAA+AGG - chr8_4:15502463-15502482 None:intergenic 30.0%
! TCTTCTACAATTTTACAGTG+TGG + chr8_4:15502503-15502522 Msa1315920:intron 30.0%
CGATATTCTTGATACTTCAA+TGG + chr8_4:15502526-15502545 Msa1315920:CDS 30.0%
AAATTGTTGAAATCAACGCA+TGG + chr8_4:15502590-15502609 Msa1315920:CDS 30.0%
TTCAACTGCAGATATATCTT+TGG + chr8_4:15502724-15502743 Msa1315920:CDS 30.0%
! GTTTTTGCGTTTTCTTATAG+TGG - chr8_4:15502786-15502805 None:intergenic 30.0%
TCATTATTAGTTCAGTTGCT+TGG - chr8_4:15502879-15502898 None:intergenic 30.0%
AATTAGAACTATGTCTCTTG+AGG - chr8_4:15503001-15503020 None:intergenic 30.0%
!! AGACATAGTTCTAATTCCTT+AGG + chr8_4:15503005-15503024 Msa1315920:three_prime_UTR 30.0%
CATATTGTGAACTTCTGATA+AGG + chr8_4:15503133-15503152 Msa1315920:three_prime_UTR 30.0%
AGAGAGATATGAAGAGAAAG+TGG - chr8_4:15500091-15500110 None:intergenic 35.0%
TACTTGCATACATCAACTTC+AGG - chr8_4:15500314-15500333 None:intergenic 35.0%
ATGTATGCAAGTATGAACCT+TGG + chr8_4:15500321-15500340 Msa1315920:CDS 35.0%
TGTATGCAAGTATGAACCTT+GGG + chr8_4:15500322-15500341 Msa1315920:CDS 35.0%
! TGGATCATCTGATTTTACCA+CGG - chr8_4:15500445-15500464 None:intergenic 35.0%
ATAAGTATGCAAAGAGCAAG+AGG + chr8_4:15500493-15500512 Msa1315920:CDS 35.0%
CAAAGAGCAAGAGGTTTAAA+AGG + chr8_4:15500502-15500521 Msa1315920:CDS 35.0%
!! AATGGTTTTTGGAAAGCTAC+TGG + chr8_4:15500534-15500553 Msa1315920:CDS 35.0%
!! TTTTTGGAAAGCTACTGGAA+AGG + chr8_4:15500539-15500558 Msa1315920:CDS 35.0%
TGGAAAGGATCGAAAGATTA+AGG + chr8_4:15500554-15500573 Msa1315920:CDS 35.0%
AGGATCGAAAGATTAAGGTT+AGG + chr8_4:15500559-15500578 Msa1315920:CDS 35.0%
GGATCGAAAGATTAAGGTTA+GGG + chr8_4:15500560-15500579 Msa1315920:CDS 35.0%
GATCGAAAGATTAAGGTTAG+GGG + chr8_4:15500561-15500580 Msa1315920:CDS 35.0%
ACAAACCTTGTCATCTTCAA+AGG - chr8_4:15500688-15500707 None:intergenic 35.0%
CAGAACAGCCAATCATATAT+AGG - chr8_4:15500810-15500829 None:intergenic 35.0%
!! ACTAAAAGAGTGACTTGGTA+AGG - chr8_4:15501034-15501053 None:intergenic 35.0%
!!! CGCATTAGTTTGTTTTGTCT+TGG + chr8_4:15501111-15501130 Msa1315920:intron 35.0%
AGCTGAGAAAAAAGCTGAAA+AGG + chr8_4:15501223-15501242 Msa1315920:CDS 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_4:15501321-15501340 Msa1315920:intron 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_4:15501410-15501429 None:intergenic 35.0%
! CATTTTCAGAGATTGAAGGA+AGG - chr8_4:15501516-15501535 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_4:15501520-15501539 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_4:15501519-15501538 Msa1315920:CDS 35.0%
! CTAAAATAGGCATCGTGAAT+TGG - chr8_4:15501565-15501584 None:intergenic 35.0%
! TCCATTTGAAACCATTGAAG+AGG + chr8_4:15501609-15501628 Msa1315920:CDS 35.0%
TCCTCTTCAATGGTTTCAAA+TGG - chr8_4:15501613-15501632 None:intergenic 35.0%
GAACTTATCTTCCTCTTCAA+TGG - chr8_4:15501623-15501642 None:intergenic 35.0%
CAGTTCAATGATTATTGACG+GGG + chr8_4:15501645-15501664 Msa1315920:CDS 35.0%
AATGATTATTGACGGGGATT+TGG + chr8_4:15501651-15501670 Msa1315920:CDS 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_4:15501697-15501716 Msa1315920:CDS 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_4:15501410-15501429 None:intergenic 35.0%
! CATTTTCAGAGATTGAAGGA+AGG - chr8_4:15501516-15501535 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_4:15501520-15501539 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_4:15501519-15501538 Msa1315920:CDS 35.0%
! CTAAAATAGGCATCGTGAAT+TGG - chr8_4:15501565-15501584 None:intergenic 35.0%
!! TCACGATGCCTATTTTAGAA+AGG + chr8_4:15501567-15501586 Msa1315920:CDS 35.0%
! TCCATTTGAAACCATTGAAG+AGG + chr8_4:15501609-15501628 Msa1315920:CDS 35.0%
TCCTCTTCAATGGTTTCAAA+TGG - chr8_4:15501613-15501632 None:intergenic 35.0%
GAACTTATCTTCCTCTTCAA+TGG - chr8_4:15501623-15501642 None:intergenic 35.0%
CAGTTCAATGATTATTGACG+GGG + chr8_4:15501645-15501664 Msa1315920:CDS 35.0%
AATGATTATTGACGGGGATT+TGG + chr8_4:15501651-15501670 Msa1315920:CDS 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_4:15501697-15501716 Msa1315920:CDS 35.0%
TATTAGTGAACCATCCATTG+CGG + chr8_4:15502263-15502282 Msa1315920:intron 35.0%
TTTCTTGAACATCCTAGTTC+AGG + chr8_4:15502551-15502570 Msa1315920:CDS 35.0%
! AGTACCTTTCGAGATGATTT+TGG + chr8_4:15502677-15502696 Msa1315920:CDS 35.0%
! GTACCTTTCGAGATGATTTT+GGG + chr8_4:15502678-15502697 Msa1315920:CDS 35.0%
! TACCTTTCGAGATGATTTTG+GGG + chr8_4:15502679-15502698 Msa1315920:CDS 35.0%
!! TTGCGTTTTCTTATAGTGGA+AGG - chr8_4:15502782-15502801 None:intergenic 35.0%
! AGCTCTTTTCAACATGAAGA+TGG - chr8_4:15502828-15502847 None:intergenic 35.0%
! TTGAAAAGAGCTGCTTTAAG+AGG + chr8_4:15502836-15502855 Msa1315920:CDS 35.0%
! CCATTTTACAACTGTTCCTA+AGG - chr8_4:15503024-15503043 None:intergenic 35.0%
CCTTAGGAACAGTTGTAAAA+TGG + chr8_4:15503021-15503040 Msa1315920:three_prime_UTR 35.0%
! TAGTGTGTGTGAGAGTTTTG+AGG - chr8_4:15500019-15500038 None:intergenic 40.0%
ATCTGAATCCAACAGGAACA+TGG - chr8_4:15500208-15500227 None:intergenic 40.0%
CTTACAAGCTCTTCATCTGT+TGG - chr8_4:15500236-15500255 None:intergenic 40.0%
! TTTTTACCTGGTAACTCCCA+AGG - chr8_4:15500341-15500360 None:intergenic 40.0%
!!! ATCTTTTTCAGCTTGTTCCG+TGG + chr8_4:15500425-15500444 Msa1315920:intron 40.0%
GGACACAAGAAAAACCATTC+TGG - chr8_4:15500465-15500484 None:intergenic 40.0%
! TACCACCTTTGAAGATGACA+AGG + chr8_4:15500680-15500699 Msa1315920:CDS 40.0%
AACCTTGTCATCTTCAAAGG+TGG - chr8_4:15500685-15500704 None:intergenic 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_4:15501335-15501354 None:intergenic 40.0%
GGAATCAATATTTCAGGCAC+AGG + chr8_4:15501480-15501499 Msa1315920:CDS 40.0%
CATCGTGAATTGGAGAGTTT+GGG - chr8_4:15501555-15501574 None:intergenic 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_4:15501695-15501714 None:intergenic 40.0%
TGTAAGGAGTTCCTGATGTA+AGG + chr8_4:15501778-15501797 Msa1315920:intron 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_4:15501335-15501354 None:intergenic 40.0%
GGAATCAATATTTCAGGCAC+AGG + chr8_4:15501480-15501499 Msa1315920:CDS 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_4:15501695-15501714 None:intergenic 40.0%
!! GACCACATTTTAGCAATGCT+TGG + chr8_4:15502298-15502317 Msa1315920:intron 40.0%
! CACCAAGCATTGCTAAAATG+TGG - chr8_4:15502303-15502322 None:intergenic 40.0%
! ACCTTTCGAGATGATTTTGG+GGG + chr8_4:15502680-15502699 Msa1315920:CDS 40.0%
!! AGATGATTTTGGGGGATTAG+AGG + chr8_4:15502688-15502707 Msa1315920:CDS 40.0%
ATCTGCAGTTGAATCACAAG+AGG - chr8_4:15502717-15502736 None:intergenic 40.0%
! CTTTTCAACATGAAGATGGC+TGG - chr8_4:15502824-15502843 None:intergenic 40.0%
ACCACTAAGCTAACACTTCA+TGG - chr8_4:15502960-15502979 None:intergenic 40.0%
GTCAAGAGTCGGAGGAAATA+AGG - chr8_4:15500186-15500205 None:intergenic 45.0%
ACAGGAACATGGTCAAGAGT+CGG - chr8_4:15500197-15500216 None:intergenic 45.0%
ACTCTTGACCATGTTCCTGT+TGG + chr8_4:15500197-15500216 Msa1315920:CDS 45.0%
GGTCTGAATCTGAATCCAAC+AGG - chr8_4:15500215-15500234 None:intergenic 45.0%
TATGAACCTTGGGAGTTACC+AGG + chr8_4:15500332-15500351 Msa1315920:CDS 45.0%
TACTATAGTGGTCGTGTTCC+TGG + chr8_4:15500621-15500640 Msa1315920:CDS 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_4:15501281-15501300 None:intergenic 45.0%
GTGAATTGGAGAGTTTGGGA+TGG - chr8_4:15501551-15501570 None:intergenic 45.0%
GCATCGTGAATTGGAGAGTT+TGG - chr8_4:15501556-15501575 None:intergenic 45.0%
TGCTGAAGTAGTCTCTATGC+CGG + chr8_4:15501735-15501754 Msa1315920:CDS 45.0%
CATCAGGAACTCCTTACATC+AGG - chr8_4:15501776-15501795 None:intergenic 45.0%
CATCGTGAATTGGCGAGTTT+GGG - chr8_4:15502012-15502031 None:intergenic 45.0%
TCAAACTCATGTCACCGCAA+TGG - chr8_4:15502280-15502299 None:intergenic 45.0%
! TCAACGCATGGTAATGTTCC+TGG + chr8_4:15502602-15502621 Msa1315920:CDS 45.0%
GATAGAAAACAGGTGCTTCC+AGG - chr8_4:15502623-15502642 None:intergenic 45.0%
TCCCCCAAAATCATCTCGAA+AGG - chr8_4:15502684-15502703 None:intergenic 45.0%
!! AACATGAAGATGGCTGGTCT+TGG - chr8_4:15502818-15502837 None:intergenic 45.0%
!! GCTGCTTTAAGAGGATCTTG+AGG + chr8_4:15502845-15502864 Msa1315920:CDS 45.0%
! GCCATGAAGTGTTAGCTTAG+TGG + chr8_4:15502956-15502975 Msa1315920:three_prime_UTR 45.0%
! TTCCTGGTGTTAACAGCAGC+TGG + chr8_4:15500637-15500656 Msa1315920:CDS 50.0%
! TCCTGGTGTTAACAGCAGCT+GGG + chr8_4:15500638-15500657 Msa1315920:CDS 50.0%
!! CCATTTTCAACGACTCGGAC+TGG - chr8_4:15501690-15501709 None:intergenic 50.0%
CCAGTCCGAGTCGTTGAAAA+TGG + chr8_4:15501687-15501706 Msa1315920:CDS 50.0%
GTGAATTGGCGAGTTTGGGA+TGG - chr8_4:15502008-15502027 None:intergenic 50.0%
GCATCGTGAATTGGCGAGTT+TGG - chr8_4:15502013-15502032 None:intergenic 50.0%
!! CCATTTTCAACGACTCGGAC+TGG - chr8_4:15501690-15501709 None:intergenic 50.0%
CCAGTCCGAGTCGTTGAAAA+TGG + chr8_4:15501687-15501706 Msa1315920:CDS 50.0%
TGCTGAAGTAGTCTCTACGC+CGG + chr8_4:15502192-15502211 Msa1315920:CDS 50.0%
ACTCATGTCACCGCAATGGA+TGG - chr8_4:15502276-15502295 None:intergenic 50.0%
! GCAGAGTATTCGCCTGAACT+AGG - chr8_4:15502566-15502585 None:intergenic 50.0%
!! TGGCTGGTCTTGGATGATAC+TGG - chr8_4:15502808-15502827 None:intergenic 50.0%
GGAACATGGTCAAGAGTCGG+AGG - chr8_4:15500194-15500213 None:intergenic 55.0%
ACCCAGCTGCTGTTAACACC+AGG - chr8_4:15500642-15500661 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 15499947 15503240 15499947 ID=Msa1315920;Name=Msa1315920
chr8_4 mRNA 15499947 15503240 15499947 ID=Msa1315920-mRNA-1;Parent=Msa1315920;Name=Msa1315920-mRNA-1;_AED=0.24;_eAED=0.24;_QI=229|1|1|1|1|1|6|375|515
chr8_4 exon 15499947 15500353 15499947 ID=Msa1315920-mRNA-1:exon:5969;Parent=Msa1315920-mRNA-1
chr8_4 exon 15500436 15500701 15500436 ID=Msa1315920-mRNA-1:exon:5970;Parent=Msa1315920-mRNA-1
chr8_4 exon 15501191 15501337 15501191 ID=Msa1315920-mRNA-1:exon:5971;Parent=Msa1315920-mRNA-1
chr8_4 exon 15501451 15501756 15501451 ID=Msa1315920-mRNA-1:exon:5972;Parent=Msa1315920-mRNA-1
chr8_4 exon 15501908 15502213 15501908 ID=Msa1315920-mRNA-1:exon:5973;Parent=Msa1315920-mRNA-1
chr8_4 exon 15502521 15503240 15502521 ID=Msa1315920-mRNA-1:exon:5974;Parent=Msa1315920-mRNA-1
chr8_4 five_prime_UTR 15499947 15500175 15499947 ID=Msa1315920-mRNA-1:five_prime_utr;Parent=Msa1315920-mRNA-1
chr8_4 CDS 15500176 15500353 15500176 ID=Msa1315920-mRNA-1:cds;Parent=Msa1315920-mRNA-1
chr8_4 CDS 15500436 15500701 15500436 ID=Msa1315920-mRNA-1:cds;Parent=Msa1315920-mRNA-1
chr8_4 CDS 15501191 15501337 15501191 ID=Msa1315920-mRNA-1:cds;Parent=Msa1315920-mRNA-1
chr8_4 CDS 15501451 15501756 15501451 ID=Msa1315920-mRNA-1:cds;Parent=Msa1315920-mRNA-1
chr8_4 CDS 15501908 15502213 15501908 ID=Msa1315920-mRNA-1:cds;Parent=Msa1315920-mRNA-1
chr8_4 CDS 15502521 15502865 15502521 ID=Msa1315920-mRNA-1:cds;Parent=Msa1315920-mRNA-1
chr8_4 three_prime_UTR 15502866 15503240 15502866 ID=Msa1315920-mRNA-1:three_prime_utr;Parent=Msa1315920-mRNA-1
Gene Sequence

>Msa1315920

ATGACAACCTTATTTCCTCCGACTCTTGACCATGTTCCTGTTGGATTCAGATTCAGACCAACAGATGAAGAGCTTGTAAGCCACTATCTCAAAAACAAGTTACTTGATAACGATTCCATTGTCAACAATGTTATACCTGAAGTTGATGTATGCAAGTATGAACCTTGGGAGTTACCAGCTTGTTCCGTGGTAAAATCAGATGATCCAGAATGGTTTTTCTTGTGTCCTATTGATTATAAGTATGCAAAGAGCAAGAGGTTTAAAAGGACAACTAATAATGGTTTTTGGAAAGCTACTGGAAAGGATCGAAAGATTAAGGTTAGGGGTAGCAATAATATTATTGGGATTAAGAAGACTCTTGTTTACTATAGTGGTCGTGTTCCTGGTGTTAACAGCAGCTGGGTGATTCATGAATATCATGATACCACCTTTGAAGATGACAAGCGGACTTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAAAGGAAGCTGATGCATATATATGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGACCATGAAAATAAAGAAACTTTTGAAGGAATTCCTGATGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCATCCCAAACTCTCCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCAGAGTCCATTTGAAACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTATGCCGGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCATCCCAAACTCGCCAATTCACGATGCCTATTTTAGAAAGGACAACATCATTGTTCAGAGTCCATTTGAAACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTACGCCGTGTGGCGATATTCTTGATACTTCAATGGCATTTCTTGAACATCCTAGTTCAGGCGAATACTCTGCATCAAAATTGTTGAAATCAACGCATGGTAATGTTCCTGGAAGCACCTGTTTTCTATCTTTAAAGAATGGTGAAATCGAAGACAACAACGAGAGTACCTTTCGAGATGATTTTGGGGGATTAGAGGCATCCTCTTGTGATTCAACTGCAGATATATCTTTGGAGATGATCAATTGTATTGAAATTTCTAGTTTACCTTCCACTATAAGAAAACGCAAAAACCAGTATCATCCAAGACCAGCCATCTTCATGTTGAAAAGAGCTGCTTTAAGAGGATCTTGA
Protein sequence

>Msa1315920

MTTLFPPTLDHVPVGFRFRPTDEELVSHYLKNKLLDNDSIVNNVIPEVDVCKYEPWELPACSVVKSDDPEWFFLCPIDYKYAKSKRFKRTTNNGFWKATGKDRKIKVRGSNNIIGIKKTLVYYSGRVPGVNSSWVIHEYHDTTFEDDKRTFVLCRLMKKAEKKAEKEADAYICDEGEPSRHMSSDHENKETFEGIPDVGDTLPEINMESIFQAQAEKYLPSISENEQEVSIPNSPIHDAYFRNDNIIVQSPFETIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSMPVGDTLPEINMESIFQAQAEKYLPSISENEQEVSIPNSPIHDAYFRKDNIIVQSPFETIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSTPCGDILDTSMAFLEHPSSGEYSASKLLKSTHGNVPGSTCFLSLKNGEIEDNNESTFRDDFGGLEASSCDSTADISLEMINCIEISSLPSTIRKRKNQYHPRPAIFMLKRAALRGS*