AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1307460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307460 MtrunA17_Chr8g0345691 88.710 310 29 1 1 304 1 310 0.0 543
Msa1307460 MtrunA17_Chr8g0345691 85.714 168 18 1 300 461 198 365 5.81e-92 285
Msa1307460 MtrunA17_Chr8g0345671 67.492 323 83 6 1 304 1 320 4.16e-139 405
Msa1307460 MtrunA17_Chr8g0345671 50.000 158 57 5 300 439 198 351 9.08e-34 131
Msa1307460 MtrunA17_Chr8g0345721 62.147 177 36 2 1 148 26 200 5.18e-71 224
Msa1307460 MtrunA17_Chr8g0345741 70.290 138 41 0 23 160 2 139 1.28e-66 210
Msa1307460 MtrunA17_Chr8g0345711 61.039 154 59 1 1 153 1 154 2.35e-63 202
Msa1307460 MtrunA17_Chr8g0345731 61.688 154 54 2 10 160 22 173 8.13e-63 201
Msa1307460 MtrunA17_Chr5g0428991 44.206 233 102 8 8 229 21 236 7.94e-53 187
Msa1307460 MtrunA17_Chr3g0128151 53.659 164 67 4 8 165 18 178 1.75e-51 183
Msa1307460 MtrunA17_Chr3g0128111 52.071 169 68 5 15 177 45 206 4.50e-51 173
Msa1307460 MtrunA17_Chr8g0345701 55.629 151 49 5 12 148 7 153 1.15e-46 159
Msa1307460 MtrunA17_Chr6g0481091 51.948 154 65 5 12 159 6 156 6.33e-44 154
Msa1307460 MtrunA17_Chr5g0400461 45.509 167 82 4 12 170 6 171 2.64e-41 150
Msa1307460 MtrunA17_Chr3g0109821 43.956 182 92 4 12 186 6 184 9.05e-41 154
Msa1307460 MtrunA17_Chr4g0054791 43.602 211 100 9 12 210 6 209 3.26e-39 144
Msa1307460 MtrunA17_Chr2g0309891 46.154 156 74 4 12 160 6 158 1.17e-38 143
Msa1307460 MtrunA17_Chr3g0139331 47.059 153 74 4 12 160 11 160 2.29e-37 139
Msa1307460 MtrunA17_Chr5g0398971 33.898 295 167 11 9 295 4 278 3.86e-37 139
Msa1307460 MtrunA17_Chr1g0197361 47.020 151 73 4 15 160 11 159 4.10e-37 143
Msa1307460 MtrunA17_Chr5g0433781 45.806 155 75 4 12 160 6 157 4.71e-37 144
Msa1307460 MtrunA17_Chr4g0018391 45.860 157 77 5 8 159 3 156 1.85e-36 137
Msa1307460 MtrunA17_Chr8g0364791 42.384 151 78 5 15 159 9 156 9.54e-36 137
Msa1307460 MtrunA17_Chr3g0130101 43.046 151 77 5 15 159 10 157 2.82e-35 134
Msa1307460 MtrunA17_Chr8g0384201 43.046 151 77 5 15 159 9 156 6.93e-35 135
Msa1307460 MtrunA17_Chr4g0056541 41.954 174 91 6 8 174 3 173 7.92e-35 133
Msa1307460 MtrunA17_Chr8g0385991 41.667 168 82 5 9 165 11 173 9.51e-35 129
Msa1307460 MtrunA17_Chr2g0318101 40.120 167 80 4 11 160 14 177 9.97e-35 132
Msa1307460 MtrunA17_Chr1g0147421 43.137 153 81 3 12 160 27 177 1.21e-34 132
Msa1307460 MtrunA17_Chr3g0091921 46.497 157 71 7 12 160 16 167 1.43e-34 131
Msa1307460 MtrunA17_Chr2g0316971 50.382 131 61 3 11 140 22 149 2.05e-34 132
Msa1307460 MtrunA17_Chr1g0183741 42.105 152 83 4 12 161 10 158 2.71e-34 129
Msa1307460 MtrunA17_Chr4g0060931 44.586 157 74 7 12 160 17 168 5.97e-34 130
Msa1307460 MtrunA17_Chr6g0484441 43.030 165 83 7 10 168 3 162 7.45e-34 129
Msa1307460 MtrunA17_Chr7g0217721 53.125 128 54 5 14 140 21 143 8.05e-34 130
Msa1307460 MtrunA17_Chr2g0326361 44.304 158 75 5 13 160 15 169 8.57e-34 129
Msa1307460 MtrunA17_Chr4g0017921 46.452 155 70 6 12 159 8 156 1.00e-33 130
Msa1307460 MtrunA17_Chr7g0263931 40.881 159 81 5 11 159 10 165 1.26e-33 129
Msa1307460 MtrunA17_Chr7g0217711 50.781 128 57 4 14 140 21 143 1.43e-33 124
Msa1307460 MtrunA17_Chr3g0092671 45.033 151 76 3 15 160 8 156 1.52e-33 132
Msa1307460 MtrunA17_Chr4g0047841 44.366 142 75 3 11 151 14 152 1.62e-33 129
Msa1307460 MtrunA17_Chr1g0201021 42.105 190 84 7 5 174 13 196 1.66e-33 133
Msa1307460 MtrunA17_Chr4g0042561 45.000 160 69 7 12 159 9 161 2.14e-33 127
Msa1307460 MtrunA17_Chr8g0361731 38.922 167 84 4 15 166 17 180 3.28e-33 129
Msa1307460 MtrunA17_Chr1g0200561 44.444 153 77 5 12 159 19 168 3.53e-33 128
Msa1307460 MtrunA17_Chr7g0252971 40.000 170 78 6 11 161 7 171 7.42e-33 127
Msa1307460 MtrunA17_Chr2g0312321 40.828 169 86 5 12 173 11 172 8.46e-33 126
Msa1307460 MtrunA17_Chr6g0453451 46.405 153 70 6 12 163 20 161 1.33e-32 126
Msa1307460 MtrunA17_Chr7g0261411 42.568 148 80 4 12 157 10 154 1.52e-32 125
Msa1307460 MtrunA17_Chr7g0214071 40.252 159 85 4 11 165 14 166 1.72e-32 124
Msa1307460 MtrunA17_Chr2g0309331 44.444 153 78 5 12 159 10 160 1.77e-32 126
Msa1307460 MtrunA17_Chr8g0372121 42.484 153 80 5 12 159 6 155 1.89e-32 125
Msa1307460 MtrunA17_Chr8g0384721 34.862 218 108 9 12 209 7 210 2.03e-32 124
Msa1307460 MtrunA17_Chr3g0130731 42.500 160 77 5 12 162 7 160 2.10e-32 125
Msa1307460 MtrunA17_Chr5g0417001 38.728 173 88 5 9 166 10 179 2.66e-32 127
Msa1307460 MtrunA17_Chr5g0405211 43.791 153 78 5 12 159 8 157 6.08e-32 125
Msa1307460 MtrunA17_Chr4g0076731 42.581 155 81 5 10 160 52 202 6.64e-32 126
Msa1307460 MtrunA17_Chr6g0453131 40.120 167 81 5 9 160 12 174 9.20e-32 125
Msa1307460 MtrunA17_Chr2g0311661 39.412 170 81 6 10 159 18 185 1.46e-31 122
Msa1307460 MtrunA17_Chr3g0124761 41.139 158 78 5 11 159 6 157 1.49e-31 122
Msa1307460 MtrunA17_Chr2g0311651 38.674 181 89 6 10 170 19 197 1.53e-31 123
Msa1307460 MtrunA17_Chr6g0461661 44.615 130 68 3 12 140 18 144 1.77e-31 124
Msa1307460 MtrunA17_Chr5g0417791 40.588 170 86 7 12 171 3 167 2.02e-31 121
Msa1307460 MtrunA17_Chr3g0144271 46.512 129 66 2 12 139 23 149 2.03e-31 125
Msa1307460 MtrunA17_Chr7g0253011 47.059 136 65 5 8 140 14 145 3.57e-31 123
Msa1307460 MtrunA17_Chr1g0197351 42.675 157 75 4 15 159 45 198 4.11e-31 125
Msa1307460 MtrunA17_Chr4g0026141 39.521 167 82 5 1 156 1 159 4.21e-31 120
Msa1307460 MtrunA17_Chr8g0346001 38.660 194 86 8 11 176 14 202 6.13e-30 121
Msa1307460 MtrunA17_Chr2g0318081 35.122 205 111 8 12 206 16 208 7.33e-30 119
Msa1307460 MtrunA17_Chr2g0321741 43.571 140 73 4 23 161 2 136 7.82e-30 119
Msa1307460 MtrunA17_Chr4g0038751 42.568 148 80 4 15 160 18 162 2.15e-29 117
Msa1307460 MtrunA17_Chr8g0359921 35.321 218 123 9 12 218 14 224 3.62e-29 117
Msa1307460 MtrunA17_Chr3g0131911 36.842 171 89 5 9 165 11 176 9.99e-29 113
Msa1307460 MtrunA17_Chr2g0321631 39.744 156 81 5 13 156 5 159 4.85e-28 111
Msa1307460 MtrunA17_Chr7g0266701 36.905 168 89 6 9 161 1 166 6.41e-28 111
Msa1307460 MtrunA17_Chr5g0442771 39.130 161 79 5 15 159 21 178 1.20e-26 109
Msa1307460 MtrunA17_Chr8g0384351 33.918 171 87 7 12 176 10 160 7.07e-20 87.0
Msa1307460 MtrunA17_Chr4g0050701 28.409 176 99 7 12 173 11 173 6.66e-19 84.7
Msa1307460 MtrunA17_Chr3g0113001 28.374 289 150 12 63 342 13 253 3.94e-18 84.7
Msa1307460 MtrunA17_Chr3g0130321 32.919 161 83 4 12 156 7 158 1.51e-16 78.2
Msa1307460 MtrunA17_Chr7g0251651 30.636 173 99 7 12 174 18 179 3.03e-16 77.0
Msa1307460 MtrunA17_Chr7g0243371 38.095 84 50 2 58 139 6 89 1.08e-14 70.5
Msa1307460 MtrunA17_Chr3g0113031 33.750 160 79 8 78 226 3 146 9.59e-14 71.2
Msa1307460 MtrunA17_Chr7g0251661 30.827 133 78 5 12 139 10 133 2.53e-12 64.7
Msa1307460 MtrunA17_Chr3g0113011 60.417 48 18 1 13 60 20 66 1.61e-11 60.1
Msa1307460 MtrunA17_Chr7g0274971 26.423 246 120 14 18 246 11 212 2.14e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307460 AT4G01550.1 52.809 178 71 4 14 185 6 176 9.34e-55 189
Msa1307460 AT4G35580.3 53.086 162 67 4 8 163 5 163 6.83e-53 186
Msa1307460 AT4G35580.2 53.086 162 67 4 8 163 5 163 7.25e-53 186
Msa1307460 AT4G35580.1 53.086 162 67 4 8 163 5 163 1.02e-52 185
Msa1307460 AT1G33060.2 54.430 158 63 4 8 159 20 174 2.54e-50 181
Msa1307460 AT1G33060.1 54.430 158 63 4 8 159 20 174 2.68e-50 181
Msa1307460 AT3G49530.2 51.235 162 67 5 8 161 9 166 3.47e-50 176
Msa1307460 AT3G49530.1 51.235 162 67 5 8 161 9 166 1.01e-49 176
Msa1307460 AT5G24590.2 52.532 158 67 4 8 159 9 164 7.15e-49 174
Msa1307460 AT4G01520.1 34.351 262 160 5 13 271 5 257 2.79e-45 160
Msa1307460 AT4G01540.4 38.596 228 119 7 14 228 6 225 5.86e-43 156
Msa1307460 AT4G17980.1 48.101 158 73 3 12 161 6 162 6.73e-43 152
Msa1307460 AT4G01540.2 38.596 228 119 7 14 228 6 225 1.18e-42 156
Msa1307460 AT4G17980.2 48.101 158 73 3 12 161 6 162 1.34e-42 152
Msa1307460 AT4G01540.3 37.885 227 122 6 14 228 6 225 1.60e-42 155
Msa1307460 AT4G01540.1 38.596 228 119 7 14 228 6 225 2.71e-42 156
Msa1307460 AT3G17730.1 45.810 179 78 6 12 184 6 171 9.82e-42 149
Msa1307460 AT5G17260.1 49.032 155 69 4 12 159 6 157 3.47e-41 153
Msa1307460 AT3G10490.1 47.368 152 70 4 15 159 30 178 9.01e-41 146
Msa1307460 AT3G10480.2 47.020 151 71 4 15 159 30 177 6.87e-40 149
Msa1307460 AT3G10480.1 46.711 152 71 4 15 159 30 178 7.28e-40 149
Msa1307460 AT3G10490.2 47.368 152 70 4 15 159 30 178 1.43e-39 148
Msa1307460 AT5G46590.1 48.750 160 73 5 12 164 6 163 1.50e-39 144
Msa1307460 AT1G65910.1 49.032 155 70 4 12 160 6 157 3.35e-39 150
Msa1307460 AT3G03200.1 47.742 155 71 4 12 159 6 157 2.38e-38 145
Msa1307460 AT1G02230.1 46.053 152 77 4 13 161 4 153 1.62e-37 140
Msa1307460 AT1G32510.1 45.029 171 73 6 12 166 6 171 6.37e-37 137
Msa1307460 AT5G61430.1 47.134 157 70 7 12 160 16 167 1.05e-36 138
Msa1307460 AT5G46590.2 51.538 130 60 3 12 140 6 133 1.35e-36 136
Msa1307460 AT1G12260.2 42.012 169 90 5 8 171 3 168 3.18e-36 137
Msa1307460 AT1G12260.1 42.012 169 90 5 8 171 3 168 4.53e-36 137
Msa1307460 AT2G24430.2 44.516 155 78 5 12 161 16 167 5.91e-36 135
Msa1307460 AT2G24430.1 44.516 155 78 5 12 161 16 167 5.91e-36 135
Msa1307460 AT2G27300.1 38.579 197 103 7 1 193 11 193 1.05e-35 135
Msa1307460 AT5G62380.2 36.797 231 124 8 8 228 3 221 2.71e-35 134
Msa1307460 AT5G62380.1 36.797 231 124 8 8 228 3 221 2.71e-35 134
Msa1307460 AT5G39610.1 45.513 156 72 6 12 159 20 170 5.85e-35 132
Msa1307460 AT1G54330.1 47.682 151 73 4 12 159 6 153 6.90e-35 132
Msa1307460 AT5G39820.1 48.551 138 67 3 10 146 18 152 7.67e-35 133
Msa1307460 AT5G07680.1 46.203 158 70 7 12 160 17 168 1.16e-34 132
Msa1307460 AT5G07680.2 46.203 158 70 7 12 160 3 154 1.24e-34 132
Msa1307460 AT3G44290.2 42.593 162 78 6 1 161 11 158 1.48e-34 129
Msa1307460 AT1G69490.1 43.038 158 75 6 12 159 9 161 1.49e-34 130
Msa1307460 AT3G15170.1 45.860 157 74 5 12 160 20 173 1.49e-34 131
Msa1307460 AT5G04410.1 45.752 153 72 5 15 160 12 160 1.56e-34 136
Msa1307460 AT3G10500.1 47.368 152 71 5 15 160 12 160 2.27e-34 135
Msa1307460 AT1G62700.1 43.949 157 80 5 8 159 3 156 2.96e-34 132
Msa1307460 AT1G62700.2 43.949 157 80 5 8 159 3 156 2.96e-34 132
Msa1307460 AT1G33280.1 46.711 152 74 5 12 159 8 156 3.68e-34 130
Msa1307460 AT3G44290.1 34.413 247 130 11 1 241 11 231 4.74e-34 130
Msa1307460 AT3G10480.3 39.459 185 69 6 15 159 30 211 7.85e-34 134
Msa1307460 AT3G04060.1 42.949 156 77 6 12 159 20 171 8.18e-34 130
Msa1307460 AT5G53950.1 49.242 132 63 3 10 140 15 143 8.97e-34 131
Msa1307460 AT1G01720.1 42.857 161 76 6 9 159 4 158 1.13e-33 128
Msa1307460 AT1G76420.1 42.675 157 76 5 12 160 22 172 1.59e-33 129
Msa1307460 AT3G15510.1 41.011 178 83 6 16 174 21 195 1.60e-33 130
Msa1307460 AT3G18400.1 43.210 162 80 6 10 164 3 159 2.11e-33 128
Msa1307460 AT5G66300.1 43.506 154 78 5 12 159 12 162 3.12e-33 127
Msa1307460 AT1G26870.1 42.857 161 74 5 15 160 19 176 3.26e-33 130
Msa1307460 AT3G29035.1 50.000 130 59 5 12 140 24 148 3.27e-33 128
Msa1307460 AT5G08790.1 41.875 160 76 6 11 159 6 159 5.45e-33 126
Msa1307460 AT1G71930.2 43.791 153 78 5 12 159 9 158 7.82e-33 127
Msa1307460 AT1G71930.1 43.791 153 78 5 12 159 9 158 7.82e-33 127
Msa1307460 AT1G79580.3 46.053 152 76 5 12 159 17 166 8.45e-33 128
Msa1307460 AT1G79580.5 46.053 152 76 5 12 159 17 166 8.45e-33 128
Msa1307460 AT1G79580.4 46.053 152 76 5 12 159 17 166 8.45e-33 128
Msa1307460 AT1G79580.2 46.053 152 76 5 12 159 17 166 8.45e-33 128
Msa1307460 AT1G79580.1 46.053 152 76 5 12 159 17 166 8.45e-33 128
Msa1307460 AT1G61110.1 41.520 171 78 6 7 159 11 177 1.48e-32 126
Msa1307460 AT1G34190.1 46.753 154 69 5 15 160 19 167 1.81e-32 130
Msa1307460 AT3G04070.2 41.212 165 78 5 12 160 10 171 1.96e-32 126
Msa1307460 AT3G15500.1 35.780 218 121 9 12 220 14 221 2.41e-32 125
Msa1307460 AT5G22290.1 40.491 163 79 7 2 161 19 166 3.35e-32 125
Msa1307460 AT4G10350.1 43.195 169 85 6 12 172 9 174 3.45e-32 125
Msa1307460 AT5G18270.2 42.308 156 78 5 12 159 21 172 7.28e-32 125
Msa1307460 AT1G34180.3 45.395 152 74 4 15 160 19 167 9.15e-32 127
Msa1307460 AT4G27410.2 35.407 209 112 8 12 210 14 209 9.33e-32 123
Msa1307460 AT2G02450.2 42.953 149 77 5 15 159 54 198 1.18e-31 125
Msa1307460 AT2G02450.1 42.953 149 77 5 15 159 54 198 1.19e-31 125
Msa1307460 AT2G18060.3 43.137 153 79 5 12 159 9 158 1.37e-31 124
Msa1307460 AT2G18060.1 43.137 153 79 5 12 159 9 158 1.37e-31 124
Msa1307460 AT1G56010.2 41.401 157 79 4 12 159 19 171 1.45e-31 124
Msa1307460 AT2G17040.1 40.606 165 87 5 15 171 9 170 1.95e-31 122
Msa1307460 AT1G34180.1 45.395 152 74 4 15 160 19 167 2.60e-31 127
Msa1307460 AT5G09330.5 43.709 151 76 4 15 159 9 156 2.81e-31 126
Msa1307460 AT5G09330.2 43.709 151 76 4 15 159 9 156 2.81e-31 126
Msa1307460 AT5G09330.4 43.709 151 76 4 15 159 9 156 2.81e-31 126
Msa1307460 AT5G09330.3 43.709 151 76 4 15 159 9 156 2.81e-31 126
Msa1307460 AT5G09330.1 43.709 151 76 4 15 159 9 156 2.81e-31 126
Msa1307460 AT5G18270.1 41.667 156 79 5 12 159 21 172 3.11e-31 123
Msa1307460 AT4G36160.1 42.484 153 80 5 12 159 10 159 3.13e-31 124
Msa1307460 AT4G36160.3 42.484 153 80 5 12 159 10 159 3.13e-31 124
Msa1307460 AT4G36160.2 42.484 153 80 5 12 159 14 163 3.44e-31 124
Msa1307460 AT1G52890.1 38.462 182 97 6 6 179 8 182 4.68e-31 122
Msa1307460 AT5G13180.1 39.103 156 84 4 11 161 13 162 1.01e-30 119
Msa1307460 AT1G02250.1 42.857 154 83 4 13 163 4 155 1.46e-30 122
Msa1307460 AT3G61910.1 40.237 169 78 6 11 159 10 175 1.64e-30 121
Msa1307460 AT3G04070.1 45.113 133 66 4 12 140 10 139 2.13e-30 121
Msa1307460 AT5G22380.1 41.139 158 81 5 10 156 3 159 3.26e-30 117
Msa1307460 AT5G64060.1 41.558 154 75 5 15 159 9 156 3.81e-30 120
Msa1307460 AT5G63790.1 38.251 183 85 7 11 171 49 225 4.28e-30 119
Msa1307460 AT5G63790.2 38.251 183 85 7 11 171 59 235 4.35e-30 119
Msa1307460 AT2G43000.1 35.385 195 107 7 15 195 21 210 1.29e-29 117
Msa1307460 AT1G01010.1 42.857 168 79 5 14 173 5 163 1.60e-29 120
Msa1307460 AT4G27410.3 33.482 224 113 9 12 210 14 226 1.73e-29 117
Msa1307460 AT5G04395.1 41.549 142 69 4 12 140 28 168 1.97e-29 114
Msa1307460 AT1G77450.1 31.739 230 121 6 11 231 9 211 2.32e-29 115
Msa1307460 AT2G33480.2 40.645 155 80 5 11 161 14 160 4.70e-29 115
Msa1307460 AT3G12910.1 34.715 193 103 5 15 187 24 213 5.30e-29 116
Msa1307460 AT4G28530.1 38.323 167 84 5 12 161 10 174 5.69e-29 117
Msa1307460 AT3G04420.2 40.588 170 97 4 13 180 4 171 6.39e-29 115
Msa1307460 AT2G46770.1 31.579 285 154 13 12 266 16 289 6.99e-29 117
Msa1307460 AT2G33480.1 40.127 157 80 5 11 161 14 162 7.49e-29 115
Msa1307460 AT3G04420.1 42.384 151 83 4 13 161 4 152 1.06e-28 116
Msa1307460 AT3G12977.1 37.500 184 95 7 12 184 18 192 1.15e-28 114
Msa1307460 AT1G34180.4 42.073 164 74 5 15 160 19 179 1.41e-28 117
Msa1307460 AT1G34180.2 42.073 164 74 5 15 160 19 179 3.00e-28 118
Msa1307460 AT1G32770.1 40.000 165 79 6 12 159 16 177 5.33e-28 114
Msa1307460 AT1G02220.1 43.537 147 78 4 12 157 3 145 7.81e-28 114
Msa1307460 AT1G52880.1 35.849 212 111 7 16 211 21 223 4.75e-27 111
Msa1307460 AT3G44350.2 35.000 160 94 4 10 160 3 161 1.31e-26 108
Msa1307460 AT3G44350.1 38.346 133 78 3 10 139 3 134 7.43e-26 103
Msa1307460 AT1G32870.1 44.156 154 73 6 15 160 13 161 2.10e-24 106
Msa1307460 AT1G32870.2 44.156 154 73 6 15 160 13 161 2.36e-24 106
Msa1307460 AT1G32870.3 44.156 154 73 6 15 160 49 197 3.86e-24 105
Msa1307460 AT3G04430.1 38.519 135 67 5 18 140 6 136 2.47e-21 92.0
Msa1307460 AT5G61430.2 42.453 106 51 5 63 160 1 104 5.27e-19 87.4
Msa1307460 AT5G64530.2 36.154 130 65 6 12 139 3 116 1.01e-18 83.6
Msa1307460 AT5G64530.1 36.154 130 65 6 12 139 3 116 1.69e-18 83.6
Msa1307460 AT3G12977.2 38.400 125 62 5 70 184 20 139 2.03e-18 84.3
Msa1307460 AT4G10350.2 39.496 119 63 4 61 172 11 127 8.82e-18 84.0
Msa1307460 AT1G56010.1 41.414 99 47 3 70 159 8 104 9.28e-18 83.2
Msa1307460 AT4G28530.2 41.284 109 47 3 12 105 10 116 1.18e-16 81.3
Msa1307460 AT3G10490.4 46.250 80 34 3 87 159 1 78 6.93e-16 79.3
Msa1307460 AT3G10490.3 46.250 80 34 3 87 159 1 78 6.93e-16 79.3
Msa1307460 AT3G56530.1 32.667 150 93 5 12 156 52 198 6.41e-14 73.2
Msa1307460 AT2G33480.3 36.000 100 56 3 68 161 8 105 4.67e-13 68.6
Msa1307460 AT2G18060.2 45.714 70 32 3 94 159 3 70 2.12e-11 64.7
Msa1307460 AT5G14490.1 28.977 176 101 6 12 169 58 227 2.24e-11 65.5
Msa1307460 AT5G14490.4 28.977 176 101 6 12 169 55 224 2.24e-11 65.5
Msa1307460 AT5G14490.3 28.977 176 101 6 12 169 58 227 3.54e-11 65.1
Msa1307460 AT1G25580.1 29.670 182 100 8 12 172 58 232 4.60e-11 65.1
Msa1307460 AT5G14490.2 28.977 176 101 6 12 169 55 224 5.02e-11 63.9

Find 106 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATTCCATATTTATTTC+TGG 0.145339 8_4:-3066848 None:intergenic
ATTGATTCCATATTTATTTC+TGG 0.145339 8_4:-3067305 None:intergenic
AGTACCTTTCGAGATGATTT+TGG 0.164359 8_4:+3068059 Msa1307460:CDS
AGGGGTAGCAATAATATTAT+TGG 0.231520 8_4:+3065884 Msa1307460:CDS
GCATCGTGAATTGGCGAGTT+TGG 0.245634 8_4:-3067392 None:intergenic
GCATCGTGAATTGGCGAGTT+TGG 0.263517 8_4:-3066935 None:intergenic
AAGTTTAATTCTAACATATT+AGG 0.265409 8_4:+3068315 Msa1307460:three_prime_UTR
AAATATGGAATCAATATTTC+AGG 0.281347 8_4:+3066856 Msa1307460:CDS
AAATATGGAATCAATATTTC+AGG 0.281347 8_4:+3067313 Msa1307460:CDS
AATGATTATTGACGGGGATT+TGG 0.293193 8_4:+3067033 Msa1307460:CDS
AATGATTATTGACGGGGATT+TGG 0.293193 8_4:+3067490 Msa1307460:CDS
ATAATATCATAGGCTAGTTT+TGG 0.296487 8_4:-3065290 None:intergenic
GATGTTGTCATTTCTAAAAT+AGG 0.297612 8_4:-3066957 None:intergenic
GATGTTGTCATTTCTAAAAT+AGG 0.297612 8_4:-3067414 None:intergenic
TACTATAGTGGTCGTGTTCC+TGG 0.304206 8_4:+3065926 Msa1307460:CDS
AAAACTAAAATTGAGGAATA+AGG 0.314591 8_4:-3068456 None:intergenic
TTTAAAAGGACAACTAATAA+TGG 0.327657 8_4:+3065821 Msa1307460:CDS
CCTTAGGAACAGTTGTAAAA+TGG 0.330273 8_4:+3068402 Msa1307460:three_prime_UTR
GGGGTAGCAATAATATTATT+GGG 0.331309 8_4:+3065885 Msa1307460:CDS
TTCAACTGCAGATATATCTT+TGG 0.332842 8_4:+3068105 Msa1307460:three_prime_UTR
TGGAAAGGATCGAAAGATTA+AGG 0.337849 8_4:+3065859 Msa1307460:CDS
CATCGTGAATTGGCGAGTTT+GGG 0.338758 8_4:-3066934 None:intergenic
CTAAAATAGGCATCGTGAAT+TGG 0.340882 8_4:-3066944 None:intergenic
CTAAAATAGGCATCGTGAAT+TGG 0.340882 8_4:-3067401 None:intergenic
CAAAGAGTAAGAGGTTTAAA+AGG 0.342416 8_4:+3065807 Msa1307460:CDS
ACCACTAAGCTAACACTTCA+TGG 0.352118 8_4:-3068338 None:intergenic
GTCAAGAGTCGGAGGAAATA+AGG 0.354940 8_4:-3065488 None:intergenic
CATCGTGAATTGGCGAGTTT+GGG 0.364030 8_4:-3067391 None:intergenic
TCAACGCATGGTAATGTTCC+TGG 0.366029 8_4:+3067984 Msa1307460:CDS
TACTTTGCCAGAAATAAATA+TGG 0.372071 8_4:+3066841 Msa1307460:CDS
TACTTTGCCAGAAATAAATA+TGG 0.372071 8_4:+3067298 Msa1307460:CDS
TCCTCTTCAATGGTTTCAAA+TGG 0.379573 8_4:-3066992 None:intergenic
GGATCGAAAGATTAAGGTTA+GGG 0.381317 8_4:+3065865 Msa1307460:CDS
TTTCTTGAACATCCTAGTTC+AGG 0.382346 8_4:+3067933 Msa1307460:CDS
GATAGAAAACAGGTGCTTCC+AGG 0.383330 8_4:-3068002 None:intergenic
ATAAGTATGCAAAGAGTAAG+AGG 0.388091 8_4:+3065798 Msa1307460:CDS
TTTGCATACTTATAATCAAT+AGG 0.393689 8_4:-3065788 None:intergenic
ATGAATCATTTGATCAAGAT+AGG 0.394555 8_4:-3068285 None:intergenic
GAACTTATCTTCCTCTTCAA+TGG 0.404183 8_4:-3067002 None:intergenic
GAGGTTGATCATAATATCAT+AGG 0.407299 8_4:-3065300 None:intergenic
AGAGAGATATGAAGAGAAAG+TGG 0.412084 8_4:-3065391 None:intergenic
TACTTGCATACATCAACTTC+AGG 0.414938 8_4:-3065616 None:intergenic
AAGACTCTTGTTTACTATAG+TGG 0.415807 8_4:+3065914 Msa1307460:CDS
CCAGTCCGAGTCGTTGAAAA+TGG 0.421990 8_4:+3067069 Msa1307460:CDS
CCAGTCCGAGTCGTTGAAAA+TGG 0.421990 8_4:+3067526 Msa1307460:CDS
GCCATGAAGTGTTAGCTTAG+TGG 0.422146 8_4:+3068337 Msa1307460:three_prime_UTR
TGGCTGGTCTTGGATGATAC+TGG 0.422975 8_4:-3068186 None:intergenic
TCCTCTTCAATGGTGTCAAA+TGG 0.426557 8_4:-3067449 None:intergenic
CGATAGTTACATTCTTAATA+CGG 0.429588 8_4:+3068491 Msa1307460:three_prime_UTR
GAACTTATCTTCCTCTTCAA+TGG 0.430761 8_4:-3067459 None:intergenic
TTCCTGGTGTTAAAAGCAGC+TGG 0.431255 8_4:+3065942 Msa1307460:CDS
TCATTATTAGTTCAGTTGCT+TGG 0.431816 8_4:-3068257 None:intergenic
AAAGCATGAATTTGTAATGC+TGG 0.434835 8_4:-3065345 None:intergenic
GACATGAAGATGGCTGGTCT+TGG 0.436307 8_4:-3068196 None:intergenic
AGGATCGAAAGATTAAGGTT+AGG 0.440394 8_4:+3065864 Msa1307460:CDS
AGACATAGTTCTAATTCCTT+AGG 0.443594 8_4:+3068386 Msa1307460:three_prime_UTR
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_4:+3067079 Msa1307460:CDS
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_4:+3067536 Msa1307460:CDS
ATTCTTTAAAGATAGAAAAC+AGG 0.461828 8_4:-3068012 None:intergenic
TTTACAAGCTCTTCATCTGT+TGG 0.462478 8_4:-3065538 None:intergenic
GTCAGTTCAATGATTATTGA+CGG 0.463736 8_4:+3067025 Msa1307460:CDS
GTCAGTTCAATGATTATTGA+CGG 0.463736 8_4:+3067482 Msa1307460:CDS
ACTCTTGACCATGTTCCTGT+TGG 0.471228 8_4:+3065502 Msa1307460:CDS
TGATATTCTTGATACTTCAA+TGG 0.472818 8_4:+3067908 Msa1307460:CDS
CATATTGTGAACTTCTGATA+AGG 0.477364 8_4:+3068514 Msa1307460:three_prime_UTR
TTCAATCTCTGAAAATGAGC+AGG 0.480194 8_4:+3066901 Msa1307460:CDS
TTCAATCTCTGAAAATGAGC+AGG 0.480194 8_4:+3067358 Msa1307460:CDS
TCAGTTCAATGATTATTGAC+GGG 0.480425 8_4:+3067026 Msa1307460:CDS
TCAGTTCAATGATTATTGAC+GGG 0.480425 8_4:+3067483 Msa1307460:CDS
TCGAAAAGAGCTGCTTTAAG+AGG 0.483514 8_4:+3068217 Msa1307460:three_prime_UTR
GAAATTATCATTAATTAAAG+TGG 0.491758 8_4:-3068434 None:intergenic
GCAGAGTATTCGCCTGAACT+AGG 0.495091 8_4:-3067945 None:intergenic
TCGGAACTCATGTGTCTACT+TGG 0.499283 8_4:-3066660 None:intergenic
GGTCTGAATCTGAATCCAAC+AGG 0.502719 8_4:-3065517 None:intergenic
TCCATTTGAAACCATTGAAG+AGG 0.526651 8_4:+3066991 Msa1307460:CDS
ACAAACCTTGTCATCTTCAA+AGG 0.536374 8_4:-3065990 None:intergenic
GGAATCAATATTTCAGGCAC+AGG 0.539733 8_4:+3066862 Msa1307460:CDS
GGAATCAATATTTCAGGCAC+AGG 0.539733 8_4:+3067319 Msa1307460:CDS
GATGCAGATATATGTGATGA+AGG 0.540324 8_4:+3066633 Msa1307460:CDS
GTGAATTGGCGAGTTTGGGT+TGG 0.547773 8_4:-3066930 None:intergenic
TCCATTTGACACCATTGAAG+AGG 0.551076 8_4:+3067448 Msa1307460:CDS
TATGAACCTTGGGAGTTACC+AGG 0.553928 8_4:+3065637 Msa1307460:CDS
TGTATGCAAGTATGAACCTT+GGG 0.557609 8_4:+3065627 Msa1307460:CDS
AGGTATAACATTGTTGACAA+TGG 0.563065 8_4:-3065596 None:intergenic
GTGAATTGGCGAGTTTGGGA+TGG 0.564115 8_4:-3067387 None:intergenic
TAAAATCAGATGACCCAGAA+TGG 0.564520 8_4:+3065753 Msa1307460:CDS
ATTAAGAATGTAACTATCGT+TGG 0.564747 8_4:-3068487 None:intergenic
TGCTGAAGTAGTCTCTATGC+CGG 0.566096 8_4:+3067117 Msa1307460:CDS
AATTAGAACTATGTCTCTTG+AGG 0.567105 8_4:-3068379 None:intergenic
CAGTTCAATGATTATTGACG+GGG 0.578711 8_4:+3067027 Msa1307460:CDS
CAGTTCAATGATTATTGACG+GGG 0.578711 8_4:+3067484 Msa1307460:CDS
ATCCCCAAAATCATCTCGAA+AGG 0.585458 8_4:-3068063 None:intergenic
TCCTGGTGTTAAAAGCAGCT+GGG 0.595945 8_4:+3065943 Msa1307460:CDS
ATCTGCAGTTGAATCACAAG+AGG 0.597794 8_4:-3068095 None:intergenic
ATGCAGATATATGTGATGAA+GGG 0.608515 8_4:+3066634 Msa1307460:CDS
TACCACCTTTGAAGATGACA+AGG 0.610149 8_4:+3065985 Msa1307460:CDS
ATCTGAATCCAACAGGAACA+TGG 0.616076 8_4:-3065510 None:intergenic
AACCTTGTCATCTTCAAAGG+TGG 0.630537 8_4:-3065987 None:intergenic
ACAGGAACATGGTCAAGAGT+CGG 0.636129 8_4:-3065499 None:intergenic
AAATTGTTGAAATCAACGCA+TGG 0.648209 8_4:+3067972 Msa1307460:CDS
TGCAGATATATGTGATGAAG+GGG 0.648801 8_4:+3066635 Msa1307460:CDS
TGCTGAAGTAGTCTCTACGC+CGG 0.650251 8_4:+3067574 Msa1307460:CDS
GCTGCTTTAAGAGGATCTTG+AGG 0.651591 8_4:+3068226 Msa1307460:three_prime_UTR
ATGTATGCAAGTATGAACCT+TGG 0.657459 8_4:+3065626 Msa1307460:CDS
GGAACATGGTCAAGAGTCGG+AGG 0.664688 8_4:-3065496 None:intergenic
GATCGAAAGATTAAGGTTAG+GGG 0.678144 8_4:+3065866 Msa1307460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTGAAATTTGTTT+TGG - chr8_4:3065437-3065456 None:intergenic 15.0%
!!! TTTTATGAGAAAATAATGTT+GGG - chr8_4:3065687-3065706 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGT+TGG - chr8_4:3065688-3065707 None:intergenic 15.0%
!! AAAGATGAAAAACATTAAAA+AGG - chr8_4:3065716-3065735 None:intergenic 15.0%
!! ATATCTATTATCATTTATCA+AGG - chr8_4:3066736-3066755 None:intergenic 15.0%
!!! AGAACTTATATTTGTTTTAT+AGG + chr8_4:3066811-3066830 Msa1307460:intron 15.0%
!! ATTTCTATTATCATTTATCA+AGG - chr8_4:3067193-3067212 None:intergenic 15.0%
!!! AGAACTTATATTTGTTTTAT+AGG + chr8_4:3066811-3066830 Msa1307460:intron 15.0%
!! TTTGAACAATATATATTTAC+CGG - chr8_4:3067596-3067615 None:intergenic 15.0%
!! AAGTTTAATTCTAACATATT+AGG + chr8_4:3068315-3068334 Msa1307460:three_prime_UTR 15.0%
!! GAAATTATCATTAATTAAAG+TGG - chr8_4:3068437-3068456 None:intergenic 15.0%
!! AACAAAAACAAAATATAGGA+AGG - chr8_4:3065261-3065280 None:intergenic 20.0%
!!! TTGTTTGTTTTTTTTTTACC+TGG - chr8_4:3065658-3065677 None:intergenic 20.0%
!! TTTATGAGAAAATAATGTTG+GGG - chr8_4:3065686-3065705 None:intergenic 20.0%
!! TTTGCATACTTATAATCAAT+AGG - chr8_4:3065791-3065810 None:intergenic 20.0%
!! TTTAAAAGGACAACTAATAA+TGG + chr8_4:3065821-3065840 Msa1307460:CDS 20.0%
!! TATGATACCAAAAGAAAAAA+GGG - chr8_4:3066260-3066279 None:intergenic 20.0%
!! ATATGATACCAAAAGAAAAA+AGG - chr8_4:3066261-3066280 None:intergenic 20.0%
!!! TTCAGTTTTTGAATGTTAAT+AGG + chr8_4:3066440-3066459 Msa1307460:intron 20.0%
!!! CAAAAGTTTCTTTATTTTCA+TGG - chr8_4:3066686-3066705 None:intergenic 20.0%
!!! GAAAATAAAGAAACTTTTGA+AGG + chr8_4:3066687-3066706 Msa1307460:CDS 20.0%
!!! ACTTATATTTGTTTTATAGG+TGG + chr8_4:3066814-3066833 Msa1307460:intron 20.0%
!!! CTTATATTTGTTTTATAGGT+GGG + chr8_4:3066815-3066834 Msa1307460:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_4:3066851-3066870 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_4:3066856-3066875 Msa1307460:CDS 20.0%
!!! ACTTATATTTGTTTTATAGG+TGG + chr8_4:3066814-3066833 Msa1307460:intron 20.0%
!!! CTTATATTTGTTTTATAGGT+GGG + chr8_4:3066815-3066834 Msa1307460:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_4:3066851-3066870 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_4:3066856-3066875 Msa1307460:CDS 20.0%
!!! ATAAATTGTGAAAAAGTACT+TGG + chr8_4:3067715-3067734 Msa1307460:intron 20.0%
!! AAGAAAATAAGCATTATGAA+AGG - chr8_4:3067869-3067888 None:intergenic 20.0%
!!! ATTCTTTAAAGATAGAAAAC+AGG - chr8_4:3068015-3068034 None:intergenic 20.0%
!!! TGTTTTCTATCTTTAAAGAA+TGG + chr8_4:3068014-3068033 Msa1307460:CDS 20.0%
!! AAAACTAAAATTGAGGAATA+AGG - chr8_4:3068459-3068478 None:intergenic 20.0%
!! ATGTTCAAAAACTAAAATTG+AGG - chr8_4:3068466-3068485 None:intergenic 20.0%
! GCTGAACAAAAACAAAATAT+AGG - chr8_4:3065265-3065284 None:intergenic 25.0%
!!! ATAATATCATAGGCTAGTTT+TGG - chr8_4:3065293-3065312 None:intergenic 25.0%
!!! GTAACTTGTTTTTGAGATAA+TGG - chr8_4:3065564-3065583 None:intergenic 25.0%
!!! GGTTTGTTTTGTTACAATAA+AGG + chr8_4:3066006-3066025 Msa1307460:intron 25.0%
!! TTACTATTTTCCTATATGAC+TGG + chr8_4:3066179-3066198 Msa1307460:intron 25.0%
!! TTTGGTATCATATTTGTTAG+AGG + chr8_4:3066268-3066287 Msa1307460:intron 25.0%
! AAAACACAAATCACAAACAA+TGG + chr8_4:3066316-3066335 Msa1307460:intron 25.0%
! ACACTGTCTTTGTAATTAAA+AGG - chr8_4:3066349-3066368 None:intergenic 25.0%
!!! AGTTTCTTTATTTTCATGGT+CGG - chr8_4:3066682-3066701 None:intergenic 25.0%
!! ATATTTTGCGAACAAAGTTT+TGG + chr8_4:3066752-3066771 Msa1307460:intron 25.0%
! TACTTTGCCAGAAATAAATA+TGG + chr8_4:3066841-3066860 Msa1307460:CDS 25.0%
!!! GATGTTGTCATTTCTAAAAT+AGG - chr8_4:3066960-3066979 None:intergenic 25.0%
! CAGGAACAATATATATTTAC+CGG - chr8_4:3067139-3067158 None:intergenic 25.0%
! TATATATTGTTCCTGATGTA+AGG + chr8_4:3067144-3067163 Msa1307460:intron 25.0%
!! AAATTTTGCCAACAAAGTTT+TGG + chr8_4:3067209-3067228 Msa1307460:intron 25.0%
! TACTTTGCCAGAAATAAATA+TGG + chr8_4:3066841-3066860 Msa1307460:CDS 25.0%
!!! GATGTTGTCATTTCTAAAAT+AGG - chr8_4:3066960-3066979 None:intergenic 25.0%
! ATACACACTTTCATATCATT+TGG - chr8_4:3067621-3067640 None:intergenic 25.0%
! TGATATTCTTGATACTTCAA+TGG + chr8_4:3067908-3067927 Msa1307460:CDS 25.0%
! ATGAATCATTTGATCAAGAT+AGG - chr8_4:3068288-3068307 None:intergenic 25.0%
! ATTAAGAATGTAACTATCGT+TGG - chr8_4:3068490-3068509 None:intergenic 25.0%
! CGATAGTTACATTCTTAATA+CGG + chr8_4:3068491-3068510 Msa1307460:three_prime_UTR 25.0%
! GAGGTTGATCATAATATCAT+AGG - chr8_4:3065303-3065322 None:intergenic 30.0%
AAAGCATGAATTTGTAATGC+TGG - chr8_4:3065348-3065367 None:intergenic 30.0%
AGGTATAACATTGTTGACAA+TGG - chr8_4:3065599-3065618 None:intergenic 30.0%
!!! TTCATCTTTTTCAGCTTGTT+CGG + chr8_4:3065727-3065746 Msa1307460:intron 30.0%
ATAAGTATGCAAAGAGTAAG+AGG + chr8_4:3065798-3065817 Msa1307460:CDS 30.0%
CAAAGAGTAAGAGGTTTAAA+AGG + chr8_4:3065807-3065826 Msa1307460:CDS 30.0%
! GGACAACTAATAATGGTTTT+TGG + chr8_4:3065828-3065847 Msa1307460:CDS 30.0%
AGGGGTAGCAATAATATTAT+TGG + chr8_4:3065884-3065903 Msa1307460:CDS 30.0%
GGGGTAGCAATAATATTATT+GGG + chr8_4:3065885-3065904 Msa1307460:CDS 30.0%
! AAGACTCTTGTTTACTATAG+TGG + chr8_4:3065914-3065933 Msa1307460:CDS 30.0%
GACAAAACATGAGTTTATTC+AGG + chr8_4:3066154-3066173 Msa1307460:intron 30.0%
!!! CTTTGAACCCTTTTTTCTTT+TGG + chr8_4:3066250-3066269 Msa1307460:intron 30.0%
AAAAGACTAAAAGAGTGACT+TGG - chr8_4:3066421-3066440 None:intergenic 30.0%
! TATCATCCGAAATTTTGTAG+CGG + chr8_4:3066553-3066572 Msa1307460:intron 30.0%
AAAAGTCCGCTACAAAATTT+CGG - chr8_4:3066562-3066581 None:intergenic 30.0%
ATGCAGATATATGTGATGAA+GGG + chr8_4:3066634-3066653 Msa1307460:CDS 30.0%
GTCAGTTCAATGATTATTGA+CGG + chr8_4:3067025-3067044 Msa1307460:CDS 30.0%
TCAGTTCAATGATTATTGAC+GGG + chr8_4:3067026-3067045 Msa1307460:CDS 30.0%
!! CTTTAAAGCCAAAACTTTGT+TGG - chr8_4:3066763-3066782 None:intergenic 30.0%
GTCAGTTCAATGATTATTGA+CGG + chr8_4:3067025-3067044 Msa1307460:CDS 30.0%
TCAGTTCAATGATTATTGAC+GGG + chr8_4:3067026-3067045 Msa1307460:CDS 30.0%
TTGGATGAAATGAAATGTCT+AGG + chr8_4:3067734-3067753 Msa1307460:intron 30.0%
CATTCTAGTAGCATTTCAAA+AGG - chr8_4:3067845-3067864 None:intergenic 30.0%
! TCTTCTACAATTTTACAGTG+TGG + chr8_4:3067885-3067904 Msa1307460:intron 30.0%
AAATTGTTGAAATCAACGCA+TGG + chr8_4:3067972-3067991 Msa1307460:CDS 30.0%
TTCAACTGCAGATATATCTT+TGG + chr8_4:3068105-3068124 Msa1307460:three_prime_UTR 30.0%
! GTTTTTGCGTTTTCTTATAG+TGG - chr8_4:3068167-3068186 None:intergenic 30.0%
TCATTATTAGTTCAGTTGCT+TGG - chr8_4:3068260-3068279 None:intergenic 30.0%
AATTAGAACTATGTCTCTTG+AGG - chr8_4:3068382-3068401 None:intergenic 30.0%
!! AGACATAGTTCTAATTCCTT+AGG + chr8_4:3068386-3068405 Msa1307460:three_prime_UTR 30.0%
CATATTGTGAACTTCTGATA+AGG + chr8_4:3068514-3068533 Msa1307460:three_prime_UTR 30.0%
AGAGAGATATGAAGAGAAAG+TGG - chr8_4:3065394-3065413 None:intergenic 35.0%
TTTACAAGCTCTTCATCTGT+TGG - chr8_4:3065541-3065560 None:intergenic 35.0%
TACTTGCATACATCAACTTC+AGG - chr8_4:3065619-3065638 None:intergenic 35.0%
ATGTATGCAAGTATGAACCT+TGG + chr8_4:3065626-3065645 Msa1307460:CDS 35.0%
TGTATGCAAGTATGAACCTT+GGG + chr8_4:3065627-3065646 Msa1307460:CDS 35.0%
TAAAATCAGATGACCCAGAA+TGG + chr8_4:3065753-3065772 Msa1307460:CDS 35.0%
GACACAAGAAAAACCATTCT+GGG - chr8_4:3065769-3065788 None:intergenic 35.0%
!! AATGGTTTTTGGAAAGCTAC+TGG + chr8_4:3065839-3065858 Msa1307460:CDS 35.0%
!! TTTTTGGAAAGCTACTGGAA+AGG + chr8_4:3065844-3065863 Msa1307460:CDS 35.0%
TGGAAAGGATCGAAAGATTA+AGG + chr8_4:3065859-3065878 Msa1307460:CDS 35.0%
AGGATCGAAAGATTAAGGTT+AGG + chr8_4:3065864-3065883 Msa1307460:CDS 35.0%
GGATCGAAAGATTAAGGTTA+GGG + chr8_4:3065865-3065884 Msa1307460:CDS 35.0%
GATCGAAAGATTAAGGTTAG+GGG + chr8_4:3065866-3065885 Msa1307460:CDS 35.0%
ACAAACCTTGTCATCTTCAA+AGG - chr8_4:3065993-3066012 None:intergenic 35.0%
!! ACTAAAAGAGTGACTTGGTA+AGG - chr8_4:3066416-3066435 None:intergenic 35.0%
!! CGCATTAGTTTGTTTAGTCT+TGG + chr8_4:3066493-3066512 Msa1307460:intron 35.0%
AGCTGAGAAAAAAGCTGAAA+AGG + chr8_4:3066605-3066624 Msa1307460:CDS 35.0%
GATGCAGATATATGTGATGA+AGG + chr8_4:3066633-3066652 Msa1307460:CDS 35.0%
TGCAGATATATGTGATGAAG+GGG + chr8_4:3066635-3066654 Msa1307460:CDS 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_4:3066703-3066722 Msa1307460:intron 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_4:3066792-3066811 None:intergenic 35.0%
! CATTTTCAGAGATTGAAGGA+AGG - chr8_4:3066898-3066917 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_4:3066902-3066921 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_4:3066901-3066920 Msa1307460:CDS 35.0%
! CTAAAATAGGCATCGTGAAT+TGG - chr8_4:3066947-3066966 None:intergenic 35.0%
! TCCATTTGAAACCATTGAAG+AGG + chr8_4:3066991-3067010 Msa1307460:CDS 35.0%
TCCTCTTCAATGGTTTCAAA+TGG - chr8_4:3066995-3067014 None:intergenic 35.0%
GAACTTATCTTCCTCTTCAA+TGG - chr8_4:3067005-3067024 None:intergenic 35.0%
CAGTTCAATGATTATTGACG+GGG + chr8_4:3067027-3067046 Msa1307460:CDS 35.0%
AATGATTATTGACGGGGATT+TGG + chr8_4:3067033-3067052 Msa1307460:CDS 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_4:3067079-3067098 Msa1307460:CDS 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_4:3066792-3066811 None:intergenic 35.0%
! CATTTTCAGAGATTGAAGGA+AGG - chr8_4:3066898-3066917 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_4:3066902-3066921 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_4:3066901-3066920 Msa1307460:CDS 35.0%
! CTAAAATAGGCATCGTGAAT+TGG - chr8_4:3066947-3066966 None:intergenic 35.0%
GAACTTATCTTCCTCTTCAA+TGG - chr8_4:3067005-3067024 None:intergenic 35.0%
CAGTTCAATGATTATTGACG+GGG + chr8_4:3067027-3067046 Msa1307460:CDS 35.0%
AATGATTATTGACGGGGATT+TGG + chr8_4:3067033-3067052 Msa1307460:CDS 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_4:3067079-3067098 Msa1307460:CDS 35.0%
TATTAGTGAACCATCCATTG+CGG + chr8_4:3067645-3067664 Msa1307460:intron 35.0%
TTTCTTGAACATCCTAGTTC+AGG + chr8_4:3067933-3067952 Msa1307460:CDS 35.0%
! AGTACCTTTCGAGATGATTT+TGG + chr8_4:3068059-3068078 Msa1307460:CDS 35.0%
! GTACCTTTCGAGATGATTTT+GGG + chr8_4:3068060-3068079 Msa1307460:CDS 35.0%
! TACCTTTCGAGATGATTTTG+GGG + chr8_4:3068061-3068080 Msa1307460:CDS 35.0%
!! TTGCGTTTTCTTATAGTGGA+AGG - chr8_4:3068163-3068182 None:intergenic 35.0%
! CCATTTTACAACTGTTCCTA+AGG - chr8_4:3068405-3068424 None:intergenic 35.0%
CCTTAGGAACAGTTGTAAAA+TGG + chr8_4:3068402-3068421 Msa1307460:three_prime_UTR 35.0%
! TAGTGTGTGTGAGAGTTTTG+AGG - chr8_4:3065322-3065341 None:intergenic 40.0%
ATCTGAATCCAACAGGAACA+TGG - chr8_4:3065513-3065532 None:intergenic 40.0%
! TTTTTACCTGGTAACTCCCA+AGG - chr8_4:3065646-3065665 None:intergenic 40.0%
!!! ATCTTTTTCAGCTTGTTCGG+TGG + chr8_4:3065730-3065749 Msa1307460:intron 40.0%
GGACACAAGAAAAACCATTC+TGG - chr8_4:3065770-3065789 None:intergenic 40.0%
! TACCACCTTTGAAGATGACA+AGG + chr8_4:3065985-3066004 Msa1307460:CDS 40.0%
AACCTTGTCATCTTCAAAGG+TGG - chr8_4:3065990-3066009 None:intergenic 40.0%
TTCAGAACAGCCAGTCATAT+AGG - chr8_4:3066192-3066211 None:intergenic 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_4:3066717-3066736 None:intergenic 40.0%
GGAATCAATATTTCAGGCAC+AGG + chr8_4:3066862-3066881 Msa1307460:CDS 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_4:3067077-3067096 None:intergenic 40.0%
TGTAAGGAGTTCCTGATGTA+AGG + chr8_4:3067160-3067179 Msa1307460:intron 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_4:3066717-3066736 None:intergenic 40.0%
GGAATCAATATTTCAGGCAC+AGG + chr8_4:3066862-3066881 Msa1307460:CDS 40.0%
TCCATTTGACACCATTGAAG+AGG + chr8_4:3067448-3067467 Msa1307460:CDS 40.0%
! TCCTCTTCAATGGTGTCAAA+TGG - chr8_4:3067452-3067471 None:intergenic 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_4:3067077-3067096 None:intergenic 40.0%
!! GACCACATTTTAGCAATGCT+TGG + chr8_4:3067680-3067699 Msa1307460:intron 40.0%
! CACCAAGCATTGCTAAAATG+TGG - chr8_4:3067685-3067704 None:intergenic 40.0%
ATCCCCAAAATCATCTCGAA+AGG - chr8_4:3068066-3068085 None:intergenic 40.0%
!! GAGATGATTTTGGGGATTAG+AGG + chr8_4:3068069-3068088 Msa1307460:CDS 40.0%
ATCTGCAGTTGAATCACAAG+AGG - chr8_4:3068098-3068117 None:intergenic 40.0%
! AGCTCTTTTCGACATGAAGA+TGG - chr8_4:3068209-3068228 None:intergenic 40.0%
! TCGAAAAGAGCTGCTTTAAG+AGG + chr8_4:3068217-3068236 Msa1307460:three_prime_UTR 40.0%
ACCACTAAGCTAACACTTCA+TGG - chr8_4:3068341-3068360 None:intergenic 40.0%
GTCAAGAGTCGGAGGAAATA+AGG - chr8_4:3065491-3065510 None:intergenic 45.0%
ACAGGAACATGGTCAAGAGT+CGG - chr8_4:3065502-3065521 None:intergenic 45.0%
ACTCTTGACCATGTTCCTGT+TGG + chr8_4:3065502-3065521 Msa1307460:CDS 45.0%
GGTCTGAATCTGAATCCAAC+AGG - chr8_4:3065520-3065539 None:intergenic 45.0%
TATGAACCTTGGGAGTTACC+AGG + chr8_4:3065637-3065656 Msa1307460:CDS 45.0%
TACTATAGTGGTCGTGTTCC+TGG + chr8_4:3065926-3065945 Msa1307460:CDS 45.0%
! TTCCTGGTGTTAAAAGCAGC+TGG + chr8_4:3065942-3065961 Msa1307460:CDS 45.0%
! TCCTGGTGTTAAAAGCAGCT+GGG + chr8_4:3065943-3065962 Msa1307460:CDS 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_4:3066663-3066682 None:intergenic 45.0%
CATCGTGAATTGGCGAGTTT+GGG - chr8_4:3066937-3066956 None:intergenic 45.0%
TGCTGAAGTAGTCTCTATGC+CGG + chr8_4:3067117-3067136 Msa1307460:CDS 45.0%
CATCAGGAACTCCTTACATC+AGG - chr8_4:3067158-3067177 None:intergenic 45.0%
CATCGTGAATTGGCGAGTTT+GGG - chr8_4:3066937-3066956 None:intergenic 45.0%
TCAAACTCATGTCACCGCAA+TGG - chr8_4:3067662-3067681 None:intergenic 45.0%
! TCAACGCATGGTAATGTTCC+TGG + chr8_4:3067984-3068003 Msa1307460:CDS 45.0%
GATAGAAAACAGGTGCTTCC+AGG - chr8_4:3068005-3068024 None:intergenic 45.0%
! CTTTTCGACATGAAGATGGC+TGG - chr8_4:3068205-3068224 None:intergenic 45.0%
!! GCTGCTTTAAGAGGATCTTG+AGG + chr8_4:3068226-3068245 Msa1307460:three_prime_UTR 45.0%
! GCCATGAAGTGTTAGCTTAG+TGG + chr8_4:3068337-3068356 Msa1307460:three_prime_UTR 45.0%
!!! ACCCAGCTGCTTTTAACACC+AGG - chr8_4:3065947-3065966 None:intergenic 50.0%
GTGAATTGGCGAGTTTGGGT+TGG - chr8_4:3066933-3066952 None:intergenic 50.0%
GCATCGTGAATTGGCGAGTT+TGG - chr8_4:3066938-3066957 None:intergenic 50.0%
!! CCATTTTCAACGACTCGGAC+TGG - chr8_4:3067072-3067091 None:intergenic 50.0%
CCAGTCCGAGTCGTTGAAAA+TGG + chr8_4:3067069-3067088 Msa1307460:CDS 50.0%
GTGAATTGGCGAGTTTGGGA+TGG - chr8_4:3067390-3067409 None:intergenic 50.0%
GCATCGTGAATTGGCGAGTT+TGG - chr8_4:3066938-3066957 None:intergenic 50.0%
!! CCATTTTCAACGACTCGGAC+TGG - chr8_4:3067072-3067091 None:intergenic 50.0%
CCAGTCCGAGTCGTTGAAAA+TGG + chr8_4:3067069-3067088 Msa1307460:CDS 50.0%
TGCTGAAGTAGTCTCTACGC+CGG + chr8_4:3067574-3067593 Msa1307460:CDS 50.0%
ACTCATGTCACCGCAATGGA+TGG - chr8_4:3067658-3067677 None:intergenic 50.0%
! GCAGAGTATTCGCCTGAACT+AGG - chr8_4:3067948-3067967 None:intergenic 50.0%
!! TGGCTGGTCTTGGATGATAC+TGG - chr8_4:3068189-3068208 None:intergenic 50.0%
!! GACATGAAGATGGCTGGTCT+TGG - chr8_4:3068199-3068218 None:intergenic 50.0%
GGAACATGGTCAAGAGTCGG+AGG - chr8_4:3065499-3065518 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 3065250 3068621 3065250 ID=Msa1307460;Name=Msa1307460
chr8_4 mRNA 3065250 3068621 3065250 ID=Msa1307460-mRNA-1;Parent=Msa1307460;Name=Msa1307460-mRNA-1;_AED=0.09;_eAED=0.09;_QI=231|1|1|1|1|1|6|533|462
chr8_4 exon 3065250 3065658 3065250 ID=Msa1307460-mRNA-1:exon:895;Parent=Msa1307460-mRNA-1
chr8_4 exon 3065741 3066006 3065741 ID=Msa1307460-mRNA-1:exon:896;Parent=Msa1307460-mRNA-1
chr8_4 exon 3066573 3066719 3066573 ID=Msa1307460-mRNA-1:exon:897;Parent=Msa1307460-mRNA-1
chr8_4 exon 3066833 3067138 3066833 ID=Msa1307460-mRNA-1:exon:898;Parent=Msa1307460-mRNA-1
chr8_4 exon 3067290 3067595 3067290 ID=Msa1307460-mRNA-1:exon:899;Parent=Msa1307460-mRNA-1
chr8_4 exon 3067903 3068621 3067903 ID=Msa1307460-mRNA-1:exon:900;Parent=Msa1307460-mRNA-1
chr8_4 five_prime_UTR 3065250 3065480 3065250 ID=Msa1307460-mRNA-1:five_prime_utr;Parent=Msa1307460-mRNA-1
chr8_4 CDS 3065481 3065658 3065481 ID=Msa1307460-mRNA-1:cds;Parent=Msa1307460-mRNA-1
chr8_4 CDS 3065741 3066006 3065741 ID=Msa1307460-mRNA-1:cds;Parent=Msa1307460-mRNA-1
chr8_4 CDS 3066573 3066719 3066573 ID=Msa1307460-mRNA-1:cds;Parent=Msa1307460-mRNA-1
chr8_4 CDS 3066833 3067138 3066833 ID=Msa1307460-mRNA-1:cds;Parent=Msa1307460-mRNA-1
chr8_4 CDS 3067290 3067595 3067290 ID=Msa1307460-mRNA-1:cds;Parent=Msa1307460-mRNA-1
chr8_4 CDS 3067903 3068088 3067903 ID=Msa1307460-mRNA-1:cds;Parent=Msa1307460-mRNA-1
chr8_4 three_prime_UTR 3068089 3068621 3068089 ID=Msa1307460-mRNA-1:three_prime_utr;Parent=Msa1307460-mRNA-1
Gene Sequence

>Msa1307460

ATGACAACCTTATTTCCTCCGACTCTTGACCATGTTCCTGTTGGATTCAGATTCAGACCAACAGATGAAGAGCTTGTAAACCATTATCTCAAAAACAAGTTACTTGATAACGATTCCATTGTCAACAATGTTATACCTGAAGTTGATGTATGCAAGTATGAACCTTGGGAGTTACCAGCTTGTTCGGTGGTAAAATCAGATGACCCAGAATGGTTTTTCTTGTGTCCTATTGATTATAAGTATGCAAAGAGTAAGAGGTTTAAAAGGACAACTAATAATGGTTTTTGGAAAGCTACTGGAAAGGATCGAAAGATTAAGGTTAGGGGTAGCAATAATATTATTGGGATTAAGAAGACTCTTGTTTACTATAGTGGTCGTGTTCCTGGTGTTAAAAGCAGCTGGGTGATTCATGAATATCATGATACCACCTTTGAAGATGACAAGCGGACTTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAAAGGAAGCTGATGCAGATATATGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGACCATGAAAATAAAGAAACTTTTGAAGGAATTCCTGATGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCAACCCAAACTCGCCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCAGAGTCCATTTGAAACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTATGCCGGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCATCCCAAACTCGCCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCAGAGTCCATTTGACACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTACGCCGTGTGGTGATATTCTTGATACTTCAATGGCATTTCTTGAACATCCTAGTTCAGGCGAATACTCTGCATCAAAATTGTTGAAATCAACGCATGGTAATGTTCCTGGAAGCACCTGTTTTCTATCTTTAAAGAATGGTGAAATCGAAGACAACAACGAGAGTACCTTTCGAGATGATTTTGGGGATTAG
Protein sequence

>Msa1307460

MTTLFPPTLDHVPVGFRFRPTDEELVNHYLKNKLLDNDSIVNNVIPEVDVCKYEPWELPACSVVKSDDPEWFFLCPIDYKYAKSKRFKRTTNNGFWKATGKDRKIKVRGSNNIIGIKKTLVYYSGRVPGVKSSWVIHEYHDTTFEDDKRTFVLCRLMKKAEKKAEKEADADICDEGEPSRHMSSDHENKETFEGIPDVGDTLPEINMESIFQAQAEKYLPSISENEQEVSNPNSPIHDAYFRNDNIIVQSPFETIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSMPVGDTLPEINMESIFQAQAEKYLPSISENEQEVSIPNSPIHDAYFRNDNIIVQSPFDTIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSTPCGDILDTSMAFLEHPSSGEYSASKLLKSTHGNVPGSTCFLSLKNGEIEDNNESTFRDDFGD*