AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177380 MtrunA17_Chr8g0347321 94.749 438 22 1 1 438 6 442 0.0 868
Msa1177380 MtrunA17_Chr8g0387921 60.325 431 152 3 9 438 10 422 0.0 541
Msa1177380 MtrunA17_Chr6g0456691 43.142 401 219 4 38 435 25 419 3.84e-118 352
Msa1177380 MtrunA17_Chr5g0414041 45.787 356 179 7 88 435 84 433 6.53e-102 310
Msa1177380 MtrunA17_Chr5g0414061 43.182 352 188 7 90 435 93 438 8.60e-102 310
Msa1177380 MtrunA17_Chr5g0414091 41.076 353 198 5 89 435 83 431 1.83e-99 304
Msa1177380 MtrunA17_Chr7g0226991 40.395 354 198 6 89 435 55 402 6.61e-96 294
Msa1177380 MtrunA17_Chr3g0140371 40.171 351 196 6 91 435 18 360 6.71e-96 292
Msa1177380 MtrunA17_Chr5g0414051 38.776 392 220 9 52 435 41 420 3.55e-95 293
Msa1177380 MtrunA17_Chr8g0391481 39.776 357 202 6 89 438 25 375 6.29e-94 288
Msa1177380 MtrunA17_Chr6g0456681 40.166 361 206 5 80 435 53 408 1.93e-91 283
Msa1177380 MtrunA17_Chr6g0451321 38.636 352 203 5 89 435 114 457 5.37e-91 283
Msa1177380 MtrunA17_Chr2g0283851 38.904 365 193 12 88 436 51 401 1.85e-85 267
Msa1177380 MtrunA17_Chr1g0188191 35.787 394 233 11 51 435 199 581 1.09e-75 247
Msa1177380 MtrunA17_Chr6g0476041 35.775 355 215 8 89 435 165 514 6.40e-73 238
Msa1177380 MtrunA17_Chr7g0221281 39.749 239 137 4 199 435 3 236 9.88e-64 206
Msa1177380 MtrunA17_Chr7g0258851 31.755 359 216 10 90 436 247 588 1.33e-51 183
Msa1177380 MtrunA17_Chr7g0259711 33.425 365 202 14 91 436 91 433 1.81e-51 179
Msa1177380 MtrunA17_Chr1g0175671 31.421 366 208 10 90 436 169 510 1.24e-50 179
Msa1177380 MtrunA17_Chr2g0287901 30.532 357 222 10 91 436 97 438 3.60e-49 173
Msa1177380 MtrunA17_Chr4g0071391 29.255 376 223 11 79 436 97 447 2.59e-48 171
Msa1177380 MtrunA17_Chr8g0368461 29.301 372 219 11 90 436 177 529 1.91e-47 171
Msa1177380 MtrunA17_Chr7g0269991 32.044 362 202 13 91 437 137 469 1.08e-46 167
Msa1177380 MtrunA17_Chr5g0414081 39.698 199 112 4 244 435 2 199 2.26e-46 159
Msa1177380 MtrunA17_Chr5g0413271 27.907 387 241 11 55 436 124 477 3.03e-46 166
Msa1177380 MtrunA17_Chr5g0430371 31.579 361 222 10 86 435 53 399 3.94e-46 164
Msa1177380 MtrunA17_Chr7g0221271 51.938 129 62 0 89 217 77 205 2.57e-45 156
Msa1177380 MtrunA17_Chr8g0360521 30.899 356 218 13 91 435 71 409 3.47e-45 162
Msa1177380 MtrunA17_Chr8g0384151 30.400 375 213 14 75 435 76 416 2.33e-44 160
Msa1177380 MtrunA17_Chr3g0113671 28.011 357 236 10 91 437 106 451 2.69e-44 160
Msa1177380 MtrunA17_Chr1g0171171 28.729 362 226 10 79 435 41 375 1.32e-43 157
Msa1177380 MtrunA17_Chr3g0105301 31.250 352 217 12 91 435 43 376 2.68e-43 156
Msa1177380 MtrunA17_Chr1g0213281 30.049 406 245 16 45 436 136 516 4.81e-43 158
Msa1177380 MtrunA17_Chr4g0068111 30.084 359 224 11 91 438 114 456 1.82e-41 153
Msa1177380 MtrunA17_Chr4g0005491 30.278 360 216 15 90 431 61 403 3.16e-41 151
Msa1177380 MtrunA17_Chr7g0243301 28.571 378 238 14 76 437 50 411 3.36e-41 151
Msa1177380 MtrunA17_Chr3g0114101 27.021 433 279 14 19 435 19 430 1.27e-40 150
Msa1177380 MtrunA17_Chr4g0005481 27.717 368 234 10 81 435 98 446 3.02e-39 146
Msa1177380 MtrunA17_Chr8g0384421 27.660 423 240 13 50 435 79 472 3.98e-39 147
Msa1177380 MtrunA17_Chr5g0437601 28.571 357 228 12 91 435 83 424 9.51e-39 145
Msa1177380 MtrunA17_Chr3g0091031 28.652 356 209 12 91 437 31 350 1.04e-38 143
Msa1177380 MtrunA17_Chr4g0006991 27.374 358 233 10 90 435 85 427 2.03e-38 144
Msa1177380 MtrunA17_Chr3g0085081 28.371 356 210 12 91 437 31 350 5.83e-38 141
Msa1177380 MtrunA17_Chr2g0283581 29.830 352 211 12 88 435 39 358 3.06e-37 139
Msa1177380 MtrunA17_Chr3g0085071 28.045 353 222 9 81 431 37 359 1.26e-36 137
Msa1177380 MtrunA17_Chr7g0221291 55.670 97 43 0 87 183 75 171 1.28e-36 132
Msa1177380 MtrunA17_Chr4g0070341 27.273 407 243 14 53 435 94 471 1.17e-35 137
Msa1177380 MtrunA17_Chr1g0210771 26.943 386 232 16 63 435 34 382 2.10e-35 134
Msa1177380 MtrunA17_Chr6g0455901 26.893 383 232 14 75 435 60 416 7.95e-35 134
Msa1177380 MtrunA17_Chr3g0097891 28.329 353 214 11 91 436 31 351 2.03e-34 131
Msa1177380 MtrunA17_Chr2g0314801 27.248 367 227 11 77 435 19 353 2.36e-34 131
Msa1177380 MtrunA17_Chr7g0242701 25.556 360 241 11 88 435 83 427 2.40e-34 132
Msa1177380 MtrunA17_Chr3g0126021 27.628 409 238 15 50 436 88 460 2.45e-34 133
Msa1177380 MtrunA17_Chr5g0437291 25.895 363 243 13 89 437 163 513 1.82e-33 131
Msa1177380 MtrunA17_Chr2g0325481 27.528 356 210 10 90 435 49 366 3.39e-33 128
Msa1177380 MtrunA17_Chr4g0045941 26.703 367 206 12 88 436 30 351 1.47e-32 126
Msa1177380 MtrunA17_Chr5g0413851 28.453 362 217 14 82 436 34 360 2.44e-32 125
Msa1177380 MtrunA17_Chr4g0049421 25.479 365 238 11 91 438 48 395 5.48e-32 125
Msa1177380 MtrunA17_Chr4g0045951 27.198 364 202 12 91 436 45 363 4.35e-31 122
Msa1177380 MtrunA17_Chr4g0041011 26.542 373 215 15 75 435 38 363 8.02e-28 113
Msa1177380 MtrunA17_Chr2g0314791 26.503 366 215 12 84 436 22 346 1.39e-27 112
Msa1177380 MtrunA17_Chr7g0275501 68.056 72 18 2 363 434 2 68 5.74e-26 100
Msa1177380 MtrunA17_Chr1g0178081 31.628 215 128 7 75 273 33 244 2.99e-23 100
Msa1177380 MtrunA17_Chr1g0209921 44.554 101 50 2 88 184 41 139 4.24e-20 89.7
Msa1177380 MtrunA17_Chr2g0287911 48.214 56 22 1 91 146 61 109 3.08e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177380 AT1G01430.1 56.849 438 175 6 6 437 20 449 5.95e-179 508
Msa1177380 AT4G01080.1 56.250 432 145 8 8 437 43 432 4.89e-170 484
Msa1177380 AT4G11090.1 50.000 438 201 6 3 438 7 428 2.09e-160 459
Msa1177380 AT4G23790.1 51.364 440 195 7 3 438 6 430 3.01e-160 459
Msa1177380 AT5G15890.1 41.505 412 203 7 46 435 127 522 2.22e-112 340
Msa1177380 AT1G70230.1 43.353 346 182 6 91 435 79 411 8.13e-105 317
Msa1177380 AT3G02440.2 43.305 351 188 5 91 437 135 478 4.03e-103 315
Msa1177380 AT3G02440.1 43.305 351 188 5 91 437 127 470 4.03e-103 315
Msa1177380 AT5G15900.1 41.667 348 195 4 91 435 67 409 1.33e-100 307
Msa1177380 AT5G15900.2 41.667 348 195 4 91 435 86 428 1.79e-100 307
Msa1177380 AT3G28150.1 40.286 350 197 4 90 435 69 410 2.83e-98 300
Msa1177380 AT5G51640.1 36.236 356 213 8 90 435 137 488 4.18e-72 236
Msa1177380 AT4G25360.1 35.775 355 215 7 90 435 174 524 2.53e-71 234
Msa1177380 AT4G25360.2 35.775 355 215 7 90 435 174 524 2.53e-71 234
Msa1177380 AT5G19160.1 31.771 384 228 13 71 436 78 445 1.57e-52 183
Msa1177380 AT3G12060.1 30.400 375 219 12 82 437 187 538 4.32e-50 178
Msa1177380 AT3G06080.2 31.198 359 221 12 91 437 103 447 9.46e-50 176
Msa1177380 AT5G06700.1 31.421 366 210 11 89 436 253 595 1.24e-49 178
Msa1177380 AT5G20590.1 32.133 361 213 13 89 436 139 480 2.32e-47 169
Msa1177380 AT1G60790.1 29.201 363 225 11 91 438 190 535 6.55e-47 169
Msa1177380 AT5G49340.1 31.044 364 212 9 91 436 100 442 8.93e-47 167
Msa1177380 AT3G11570.1 31.503 346 204 11 104 436 95 420 1.86e-46 166
Msa1177380 AT5G06230.2 30.079 379 220 13 81 437 11 366 8.00e-46 163
Msa1177380 AT5G64020.1 30.811 370 213 11 91 435 57 408 1.06e-45 163
Msa1177380 AT3G62390.1 30.214 374 222 13 78 437 125 473 1.29e-45 165
Msa1177380 AT5G06230.1 30.079 379 220 13 81 437 52 407 2.10e-45 163
Msa1177380 AT1G73140.1 29.609 358 226 10 91 438 67 408 7.55e-45 161
Msa1177380 AT1G48880.1 30.163 368 207 12 83 435 107 439 8.00e-45 162
Msa1177380 AT2G30010.1 29.805 359 222 10 91 436 56 397 1.93e-44 160
Msa1177380 AT2G30010.2 29.805 359 222 10 91 436 99 440 4.25e-44 160
Msa1177380 AT5G58600.1 29.692 357 219 12 91 436 66 401 1.37e-41 152
Msa1177380 AT2G38320.1 29.477 363 229 14 89 437 57 406 2.18e-40 149
Msa1177380 AT2G40150.1 26.171 363 243 10 90 437 70 422 3.07e-40 149
Msa1177380 AT3G11030.1 29.213 356 228 12 91 435 106 448 4.45e-40 149
Msa1177380 AT5G64470.2 29.640 361 225 14 91 436 55 401 8.09e-40 147
Msa1177380 AT5G64470.3 29.330 358 224 13 91 436 55 395 1.14e-39 147
Msa1177380 AT2G40160.2 27.072 362 236 10 91 437 77 425 4.04e-39 146
Msa1177380 AT2G40160.1 27.247 356 231 10 91 431 77 419 4.56e-39 146
Msa1177380 AT2G30900.1 29.380 371 218 12 79 438 31 368 7.51e-39 144
Msa1177380 AT3G55990.1 27.374 358 239 11 90 437 139 485 1.79e-38 145
Msa1177380 AT2G40320.1 25.706 354 242 9 91 435 81 422 2.58e-38 144
Msa1177380 AT5G01360.2 26.891 357 237 11 90 435 35 378 5.01e-38 142
Msa1177380 AT5G01360.1 26.891 357 237 11 90 435 91 434 1.84e-37 142
Msa1177380 AT2G14530.1 28.291 357 232 10 91 435 62 406 2.72e-37 140
Msa1177380 AT5G20680.6 27.105 380 237 11 73 435 101 457 2.10e-36 139
Msa1177380 AT5G20680.2 27.105 380 237 11 73 435 177 533 3.83e-36 140
Msa1177380 AT5G20680.4 27.105 380 237 11 73 435 195 551 4.11e-36 140
Msa1177380 AT5G20680.1 27.105 380 237 11 73 435 195 551 4.11e-36 140
Msa1177380 AT5G20680.3 27.105 380 237 11 73 435 195 551 4.11e-36 140
Msa1177380 AT5G20680.5 27.105 380 237 11 73 435 195 551 4.11e-36 140
Msa1177380 AT5G19160.2 31.086 267 164 8 71 325 78 336 1.19e-35 135
Msa1177380 AT3G54260.1 29.330 358 210 15 91 437 51 376 1.06e-34 133
Msa1177380 AT2G37720.1 27.895 380 223 12 79 435 131 482 3.79e-34 133
Msa1177380 AT5G01620.2 26.479 355 240 9 89 435 108 449 4.10e-34 133
Msa1177380 AT5G01620.1 26.479 355 240 9 89 435 108 449 4.10e-34 133
Msa1177380 AT5G01620.3 26.479 355 240 9 89 435 116 457 4.68e-34 132
Msa1177380 AT3G06080.1 31.349 252 154 7 91 331 103 346 6.02e-34 130
Msa1177380 AT2G42570.1 27.642 369 223 10 78 438 35 367 1.15e-33 130
Msa1177380 AT1G29050.1 27.049 366 229 10 79 436 44 379 2.98e-33 129
Msa1177380 AT3G62390.2 30.403 273 167 8 78 338 125 386 7.10e-33 129
Msa1177380 AT2G38320.2 28.788 330 209 13 121 437 7 323 1.71e-32 125
Msa1177380 AT1G78710.1 25.729 377 218 15 79 437 26 358 6.51e-32 125
Msa1177380 AT2G34070.1 26.989 352 223 9 88 435 62 383 9.40e-32 125
Msa1177380 AT3G14850.2 27.119 354 218 11 91 436 34 355 1.60e-30 121
Msa1177380 AT2G31110.2 27.100 369 220 12 80 437 34 364 3.34e-30 120
Msa1177380 AT1G78710.2 26.178 382 177 16 68 437 10 298 4.21e-28 113
Msa1177380 AT5G58600.2 29.832 238 148 8 91 323 66 289 8.16e-28 112
Msa1177380 AT2G40160.3 37.692 130 80 1 91 219 77 206 1.32e-27 112
Msa1177380 AT5G06230.3 29.323 266 161 9 81 328 52 308 2.02e-27 111
Msa1177380 AT5G20590.2 27.668 253 162 8 85 325 135 378 1.89e-26 110
Msa1177380 AT5G64470.4 27.985 268 174 10 91 346 55 315 8.46e-26 107
Msa1177380 AT5G64470.1 28.090 267 173 10 91 345 55 314 1.93e-25 106
Msa1177380 AT2G30900.2 30.568 229 130 7 79 298 31 239 6.98e-24 100
Msa1177380 AT2G31110.3 31.953 169 110 1 80 243 34 202 1.04e-22 97.4

Find 110 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATACTCTTGACCATAAT+TGG 0.140160 8_1:-9739732 Msa1177380:CDS
CTGATTTAGGGTACCTTTAT+TGG 0.167850 8_1:-9741875 Msa1177380:CDS
AATAAAGCAATGGCCTTTAT+TGG 0.211094 8_1:-9741786 Msa1177380:CDS
AGCACTAAGGTCTGAAAATA+TGG 0.245307 8_1:-9742397 Msa1177380:exon
TTGTTTCTGTTTCCACCTTT+TGG 0.251360 8_1:-9742440 Msa1177380:five_prime_UTR
CAGAAACAAGCTTTGGTGTT+TGG 0.254161 8_1:+9742454 None:intergenic
TTTGGTAATTCACAATCTTT+TGG 0.256203 8_1:+9741843 None:intergenic
ACTTGAAATTCATCATATTC+TGG 0.258772 8_1:+9742171 None:intergenic
TAAACAAAACAGTTGCATTA+TGG 0.267888 8_1:+9739515 None:intergenic
ATGAGACTAAGAAACTTCTT+TGG 0.275333 8_1:+9741813 None:intergenic
CATAATCAAAATTGTTGAAT+TGG 0.296433 8_1:+9739704 None:intergenic
TATATTCATTATAAAATTCA+TGG 0.301486 8_1:+9738886 None:intergenic
CATGAAAACAACACAGTATC+TGG 0.304134 8_1:-9739637 Msa1177380:CDS
TTGGATTCCATCTCCAATAA+AGG 0.308429 8_1:+9741862 None:intergenic
GAGCATAAACTAAATAAAAT+AGG 0.314015 8_1:+9738851 None:intergenic
GGAAAGAATTTGACTGATCT+AGG 0.322511 8_1:-9739598 Msa1177380:CDS
TAGCAAATGGTTGGAATTGC+CGG 0.322622 8_1:+9739251 None:intergenic
ACTTCACACTCTCAGTAATA+TGG 0.322961 8_1:-9739828 Msa1177380:CDS
TTGTGATTGGTGGTGGAAAA+TGG 0.329782 8_1:-9739681 Msa1177380:CDS
TGGTGTGAACTTGAAACTTT+TGG 0.331395 8_1:-9739323 Msa1177380:CDS
TGTGATCCAATACTTCTATT+AGG 0.346558 8_1:-9739052 Msa1177380:three_prime_UTR
TGAATTGGTTGGTCCAATTA+TGG 0.357146 8_1:+9739719 None:intergenic
AGATCAGTCAAATTCTTTCC+AGG 0.366670 8_1:+9739601 None:intergenic
GTCAAGTAGTAATTAGTATA+GGG 0.388694 8_1:+9742519 None:intergenic
TCATATTCTGGTGCTTTAAG+AGG 0.390318 8_1:+9742183 None:intergenic
GAATGGAGTTTCATCTTCAA+TGG 0.394596 8_1:-9739767 Msa1177380:CDS
TTTGTCTCTGTTTGAGGAGG+AGG 0.395992 8_1:+9742231 None:intergenic
ATGGACATCCAGGACCTTAC+CGG 0.396225 8_1:-9739270 Msa1177380:CDS
TGAGATGGAATCACCAATAA+AGG 0.402777 8_1:+9741773 None:intergenic
AGGAATATAGATCAAAGATA+TGG 0.402990 8_1:-9739867 Msa1177380:CDS
AAAATGGAAGACCTGATTTA+GGG 0.405923 8_1:-9741887 Msa1177380:CDS
TGAGACTAAGAAACTTCTTT+GGG 0.406853 8_1:+9741814 None:intergenic
ATCAAAATTGTTGAATTGGT+TGG 0.411356 8_1:+9739708 None:intergenic
TACCAGGACCAATTGATTCA+TGG 0.412261 8_1:-9739183 Msa1177380:CDS
ATAGCTGCTTTAATAAGAAA+AGG 0.412745 8_1:+9739802 None:intergenic
ATCGATTTCACCCTCTTTGA+AGG 0.413565 8_1:+9739423 None:intergenic
TACTACTTGACAACACCGTT+TGG 0.419867 8_1:-9742507 Msa1177380:five_prime_UTR
AACTTCTTTGGGTTGAACTT+TGG 0.421408 8_1:+9741825 None:intergenic
TTTGATTATGTTGTGATTGG+TGG 0.423731 8_1:-9739691 Msa1177380:CDS
TAGCTGCTTTAATAAGAAAA+GGG 0.432646 8_1:+9739803 None:intergenic
AAATCCATTCTCCCACAAAA+AGG 0.432762 8_1:+9741979 None:intergenic
GCTCAACCTAATAGAAGTAT+TGG 0.435865 8_1:+9739046 None:intergenic
TGTCAAGTAGTAATTAGTAT+AGG 0.441799 8_1:+9742518 None:intergenic
CAATAAAGGTACCCTAAATC+AGG 0.442542 8_1:+9741876 None:intergenic
GTCTCTGTTTGAGGAGGAGG+AGG 0.445712 8_1:+9742234 None:intergenic
GAGAATGGTGAATGGTTTAG+TGG 0.451015 8_1:-9739469 Msa1177380:CDS
TAGTAATTAGTATAGGGAAA+TGG 0.454422 8_1:+9742525 None:intergenic
TAGGGTACCTTTATTGGAGA+TGG 0.459224 8_1:-9741869 Msa1177380:CDS
TCATTCTTATCCTTAGCAAA+TGG 0.464080 8_1:+9739238 None:intergenic
CCTGTGAGAGAATGCAAAGT+AGG 0.465195 8_1:+9741733 None:intergenic
ATATCATTCCATGAATCAAT+TGG 0.466957 8_1:+9739175 None:intergenic
CTGCAAATTTAACACAGAAA+AGG 0.469651 8_1:+9742346 None:intergenic
TGTTTACATTGGTGTTTACC+AGG 0.471207 8_1:-9739199 Msa1177380:CDS
GATCCACTCCCGAATAAAAC+AGG 0.477374 8_1:-9742573 None:intergenic
TAAGGTCCTGGATGTCCATC+TGG 0.479309 8_1:+9739274 None:intergenic
CACCAGCTTGAGTGACCAAA+AGG 0.484441 8_1:+9742425 None:intergenic
TCTTATCCTTAGCAAATGGT+TGG 0.486799 8_1:+9739242 None:intergenic
GTTGAGCTGCATTGTGTACA+TGG 0.488378 8_1:-9739030 Msa1177380:three_prime_UTR
TCTGGCTGTCATTACTGTCC+TGG 0.491314 8_1:-9739619 Msa1177380:CDS
TGGAATTGCCGGTAAGGTCC+TGG 0.494249 8_1:+9739262 None:intergenic
CTGAACATGGTTGCGTGAGA+TGG 0.497150 8_1:+9741758 None:intergenic
CTTAGACCAGATGGACATCC+AGG 0.497377 8_1:-9739280 Msa1177380:CDS
GATTATGTTGTGATTGGTGG+TGG 0.497535 8_1:-9739688 Msa1177380:CDS
ATGGTGAATGGTTTAGTGGA+GGG 0.498774 8_1:-9739465 Msa1177380:CDS
CCTACTTTGCATTCTCTCAC+AGG 0.498895 8_1:-9741733 Msa1177380:intron
TCACCATTCTCAAAGTGATC+TGG 0.502058 8_1:+9739481 None:intergenic
CTTTCATTGCTTAGACCAGA+TGG 0.505017 8_1:-9739289 Msa1177380:CDS
CATATTCTGGTGCTTTAAGA+GGG 0.506797 8_1:+9742184 None:intergenic
ATCACTTTGAGAATGGTGAA+TGG 0.515741 8_1:-9739477 Msa1177380:CDS
GAAAGAATTTGACTGATCTA+GGG 0.517914 8_1:-9739597 Msa1177380:CDS
CATAATGACTACAAACCAAA+CGG 0.521452 8_1:+9742492 None:intergenic
GCTATTTATGAAGACATGAA+TGG 0.523460 8_1:-9739784 Msa1177380:CDS
GTGGAAACAGAAACAAGCTT+TGG 0.526460 8_1:+9742447 None:intergenic
TTCCATGAATCAATTGGTCC+TGG 0.529258 8_1:+9739181 None:intergenic
TTGATCTATATTCCTTGTCA+TGG 0.529841 8_1:+9739875 None:intergenic
AATGGTTGGAATTGCCGGTA+AGG 0.530625 8_1:+9739256 None:intergenic
TTCAGAATGATTGTTTACAT+TGG 0.536286 8_1:-9739210 Msa1177380:CDS
TCGATTTCACCCTCTTTGAA+GGG 0.541605 8_1:+9739424 None:intergenic
TATAGGGAAATGGAAACCAT+TGG 0.542962 8_1:+9742535 None:intergenic
GAGAGTGTGAAGTTATGAGA+GGG 0.550677 8_1:+9739838 None:intergenic
ACACCAGATCACTTTGAGAA+TGG 0.551530 8_1:-9739484 Msa1177380:CDS
CAACTCTCATTAGTGTACAT+TGG 0.551778 8_1:+9741942 None:intergenic
ATGTGACAATAATATGTCCT+TGG 0.552768 8_1:-9739122 Msa1177380:three_prime_UTR
GCACTAAGGTCTGAAAATAT+GGG 0.554563 8_1:-9742396 Msa1177380:exon
TTTGATGAGGTTCAATCACA+TGG 0.559417 8_1:+9741919 None:intergenic
TTTGCGAAGGCTTCGTCACA+AGG 0.561209 8_1:-9739355 Msa1177380:CDS
GCAATTCCAACCATTTGCTA+AGG 0.562296 8_1:-9739248 Msa1177380:CDS
TTCATGGAATGATATAGTAA+TGG 0.569254 8_1:-9739167 Msa1177380:CDS
TCGAACTGTACCCTTCAAAG+AGG 0.572283 8_1:-9739434 Msa1177380:CDS
TCATGGTAGACCTCAACAGC+TGG 0.573403 8_1:+9739892 None:intergenic
CTGTGAGAGAATGCAAAGTA+GGG 0.576431 8_1:+9741734 None:intergenic
TCGTCACAAGGATCTGAGAA+TGG 0.577529 8_1:-9739343 Msa1177380:CDS
AACGATAATTATTGTAACCA+AGG 0.584871 8_1:+9739105 None:intergenic
AGAAGTTTCTTAGTCTCATG+AGG 0.585285 8_1:-9741809 Msa1177380:CDS
AGCTGGTGAAGAGAGCACTA+AGG 0.586013 8_1:-9742410 Msa1177380:five_prime_UTR
TGAGAGTGTGAAGTTATGAG+AGG 0.587200 8_1:+9739837 None:intergenic
AAACATGCAAAAGACAAATG+AGG 0.588479 8_1:-9738989 Msa1177380:three_prime_UTR
CGAACTGTACCCTTCAAAGA+GGG 0.598509 8_1:-9739433 Msa1177380:CDS
ACAGGTGGAACCAGCTGTTG+AGG 0.602644 8_1:-9739902 Msa1177380:intron
AGCTGCTTTAATAAGAAAAG+GGG 0.606112 8_1:+9739804 None:intergenic
AATTATGGTCAAGAGTATCA+AGG 0.611965 8_1:+9739734 None:intergenic
CAGCTTGAGTGACCAAAAGG+TGG 0.614149 8_1:+9742428 None:intergenic
TGCAAAGTAGGGACTGAACA+TGG 0.618165 8_1:+9741745 None:intergenic
TCTCATGAGGAATAAAGCAA+TGG 0.629275 8_1:-9741796 Msa1177380:CDS
GATGTAGATTCTATCATGAG+AGG 0.632190 8_1:-9739394 Msa1177380:CDS
ATATTCTGGTGCTTTAAGAG+GGG 0.646371 8_1:+9742185 None:intergenic
TGAAGTTCAAGAGTTTGCGA+AGG 0.647288 8_1:-9739368 Msa1177380:CDS
CATGCAAAAGACAAATGAGG+TGG 0.676761 8_1:-9738986 Msa1177380:three_prime_UTR
AATGGTGAATGGTTTAGTGG+AGG 0.679799 8_1:-9739466 Msa1177380:CDS
TGTTGAGGTCTACCATGACA+AGG 0.690643 8_1:-9739887 Msa1177380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAAAAAAATAAAAT+TGG - chr8_1:9741284-9741303 Msa1177380:intron 0.0%
!! AATGAATAATTATGTAAAAT+TGG - chr8_1:9740678-9740697 Msa1177380:intron 10.0%
!!! TTAATTTATAGTGATTTTTT+AGG - chr8_1:9740710-9740729 Msa1177380:intron 10.0%
!!! TAATTTATAGTGATTTTTTA+GGG - chr8_1:9740711-9740730 Msa1177380:intron 10.0%
!!! TTTTTTTTTTGCTTATAATA+TGG - chr8_1:9741139-9741158 Msa1177380:intron 10.0%
!!! TTTTTTTTTGCTTATAATAT+GGG - chr8_1:9741140-9741159 Msa1177380:intron 10.0%
!! TATATTCATTATAAAATTCA+TGG + chr8_1:9742495-9742514 None:intergenic 10.0%
!! ATTTAATCATTCAAACAAAA+AGG + chr8_1:9739722-9739741 None:intergenic 15.0%
!!! TTATTTGAAAATTTTACTCT+TGG - chr8_1:9739961-9739980 Msa1177380:intron 15.0%
!!! AAATTTTACAAGCTAAAAAA+AGG + chr8_1:9740188-9740207 None:intergenic 15.0%
!!! ATTCTTGAAATAAGTTTTAT+AGG + chr8_1:9741064-9741083 None:intergenic 15.0%
!!! TGATTTAATACAAATTTTGT+AGG + chr8_1:9741435-9741454 None:intergenic 15.0%
!!! ATGGTAAGAAATTTTTTATG+TGG - chr8_1:9739256-9739275 Msa1177380:CDS 20.0%
!! ACTTTAACAATTGTTTGTTT+AGG - chr8_1:9739361-9739380 Msa1177380:CDS 20.0%
!!! TTTTTCATACAATTTTGATG+AGG + chr8_1:9739475-9739494 None:intergenic 20.0%
!! CATCAAAATTGTATGAAAAA+TGG - chr8_1:9739475-9739494 Msa1177380:CDS 20.0%
!!! AAATTTTCAAATAAAACGCT+AGG + chr8_1:9739955-9739974 None:intergenic 20.0%
!!! CATGTTATGTCATTTTATAT+AGG - chr8_1:9740393-9740412 Msa1177380:intron 20.0%
!! ATTAAGTAATGAACATAACT+TGG + chr8_1:9740607-9740626 None:intergenic 20.0%
!!! GGTTTTTTTGCTTATAATTT+GGG + chr8_1:9740867-9740886 None:intergenic 20.0%
!!! AGGTTTTTTTGCTTATAATT+TGG + chr8_1:9740868-9740887 None:intergenic 20.0%
!!! GTCTTTTTTGCTTATAATTT+GGG + chr8_1:9740903-9740922 None:intergenic 20.0%
!!! TGTCTTTTTTGCTTATAATT+TGG + chr8_1:9740904-9740923 None:intergenic 20.0%
!!! CAAAAAATTATCTTTTCCAA+AGG - chr8_1:9740953-9740972 Msa1177380:intron 20.0%
!!! GATGTAAAAACAATTTTCAT+TGG + chr8_1:9741039-9741058 None:intergenic 20.0%
!! CAGTTAATTTATTGTTTCAA+TGG + chr8_1:9741254-9741273 None:intergenic 20.0%
!! CATTGAAACAATAAATTAAC+TGG - chr8_1:9741252-9741271 Msa1177380:intron 20.0%
!! CATAATCAAAATTGTTGAAT+TGG + chr8_1:9741677-9741696 None:intergenic 20.0%
!!! AATTTTGATTATGTTGTGAT+TGG - chr8_1:9741684-9741703 Msa1177380:intron 20.0%
!!! ATAATTATCGTTTTGAATTC+AGG - chr8_1:9742284-9742303 Msa1177380:CDS 20.0%
!!! ATTCAGGATTTTTTACTATA+TGG - chr8_1:9742300-9742319 Msa1177380:CDS 20.0%
!! TGGTAAAAAAAACATGAAAT+GGG + chr8_1:9742475-9742494 None:intergenic 20.0%
!! ATGGTAAAAAAAACATGAAA+TGG + chr8_1:9742476-9742495 None:intergenic 20.0%
!! GAGCATAAACTAAATAAAAT+AGG + chr8_1:9742530-9742549 None:intergenic 20.0%
! TAGTAATTAGTATAGGGAAA+TGG + chr8_1:9738856-9738875 None:intergenic 25.0%
! GTCAAGTAGTAATTAGTATA+GGG + chr8_1:9738862-9738881 None:intergenic 25.0%
! TGTCAAGTAGTAATTAGTAT+AGG + chr8_1:9738863-9738882 None:intergenic 25.0%
! ACTTGAAATTCATCATATTC+TGG + chr8_1:9739210-9739229 None:intergenic 25.0%
!!! TTTGGTAATTCACAATCTTT+TGG + chr8_1:9739538-9739557 None:intergenic 25.0%
!! TATTGTTAACTTTGTTGGTT+TGG - chr8_1:9739668-9739687 Msa1177380:CDS 25.0%
!! TAGAATATCAAGTTGCAAAT+TGG + chr8_1:9739697-9739716 None:intergenic 25.0%
! TAATATGATCCTTGATATTG+TGG - chr8_1:9739792-9739811 Msa1177380:CDS 25.0%
! CTTGATATTGTGGATAAATA+CGG - chr8_1:9739802-9739821 Msa1177380:CDS 25.0%
! AAATAAAACGCTAGGAATTT+AGG + chr8_1:9739947-9739966 None:intergenic 25.0%
! TGTTGTGATCTTTGATATTA+CGG - chr8_1:9740004-9740023 Msa1177380:intron 25.0%
!! TTTTACAAGCTAAAAAAAGG+TGG + chr8_1:9740185-9740204 None:intergenic 25.0%
! ATGTATTCAAATGTAGTAAC+AGG - chr8_1:9740246-9740265 Msa1177380:intron 25.0%
!!! GGTTCCAAAATTTTAAAATG+AGG - chr8_1:9740272-9740291 Msa1177380:intron 25.0%
!!! ATGGCCTCATTTTAAAATTT+TGG + chr8_1:9740279-9740298 None:intergenic 25.0%
!!! TAATTTGTTGACAATGACAA+GGG + chr8_1:9740424-9740443 None:intergenic 25.0%
!!! TTAATTTGTTGACAATGACA+AGG + chr8_1:9740425-9740444 None:intergenic 25.0%
! AAAAGCTTATCATAAACATC+TGG + chr8_1:9740553-9740572 None:intergenic 25.0%
! CATAACTTGGTAAACATATA+AGG + chr8_1:9740594-9740613 None:intergenic 25.0%
!! GGATTTAGAACATTATTCTA+GGG - chr8_1:9740737-9740756 Msa1177380:intron 25.0%
!! TTTTTGCTTATAATTTGGGA+CGG + chr8_1:9740863-9740882 None:intergenic 25.0%
!!! CTTTGCATTTAATTTTCCTT+TGG + chr8_1:9740972-9740991 None:intergenic 25.0%
!! TTTTTGCTTATAATATGGGA+CGG - chr8_1:9741144-9741163 Msa1177380:intron 25.0%
!!! TTGTCTTTGTTAGTTTTAGT+TGG + chr8_1:9741178-9741197 None:intergenic 25.0%
! AGGAATATAGATCAAAGATA+TGG - chr8_1:9741511-9741530 Msa1177380:intron 25.0%
!! TAGCTGCTTTAATAAGAAAA+GGG + chr8_1:9741578-9741597 None:intergenic 25.0%
!! ATAGCTGCTTTAATAAGAAA+AGG + chr8_1:9741579-9741598 None:intergenic 25.0%
! ATCAAAATTGTTGAATTGGT+TGG + chr8_1:9741673-9741692 None:intergenic 25.0%
!! AAACAAGTTGTAATGCTTTT+CGG + chr8_1:9741821-9741840 None:intergenic 25.0%
! TAAACAAAACAGTTGCATTA+TGG + chr8_1:9741866-9741885 None:intergenic 25.0%
! TTCAGAATGATTGTTTACAT+TGG - chr8_1:9742168-9742187 Msa1177380:CDS 25.0%
! ATATCATTCCATGAATCAAT+TGG + chr8_1:9742206-9742225 None:intergenic 25.0%
! TTCATGGAATGATATAGTAA+TGG - chr8_1:9742211-9742230 Msa1177380:CDS 25.0%
! AACGATAATTATTGTAACCA+AGG + chr8_1:9742276-9742295 None:intergenic 25.0%
!!! GTTACTTTTATCACAACCAA+TGG - chr8_1:9738827-9738846 Msa1177380:three_prime_UTR 30.0%
CATAATGACTACAAACCAAA+CGG + chr8_1:9738889-9738908 None:intergenic 30.0%
CTGCAAATTTAACACAGAAA+AGG + chr8_1:9739035-9739054 None:intergenic 30.0%
ATAATGCTAAGTGTTTATGC+TGG - chr8_1:9739314-9739333 Msa1177380:CDS 30.0%
! AAGAAAATGTGACCTTTTTG+TGG - chr8_1:9739387-9739406 Msa1177380:CDS 30.0%
! AGAAAATGTGACCTTTTTGT+GGG - chr8_1:9739388-9739407 Msa1177380:CDS 30.0%
AAAAATGGAAGACCTGATTT+AGG - chr8_1:9739490-9739509 Msa1177380:CDS 30.0%
AAAATGGAAGACCTGATTTA+GGG - chr8_1:9739491-9739510 Msa1177380:CDS 30.0%
TGAGACTAAGAAACTTCTTT+GGG + chr8_1:9739567-9739586 None:intergenic 30.0%
ATGAGACTAAGAAACTTCTT+TGG + chr8_1:9739568-9739587 None:intergenic 30.0%
AATAAAGCAATGGCCTTTAT+TGG - chr8_1:9739592-9739611 Msa1177380:CDS 30.0%
! ACAGGTATTGTTAACTTTGT+TGG - chr8_1:9739663-9739682 Msa1177380:CDS 30.0%
CGTATTTATCCACAATATCA+AGG + chr8_1:9739804-9739823 None:intergenic 30.0%
TGTAAGTGTAGATATGATTG+TGG - chr8_1:9739879-9739898 Msa1177380:CDS 30.0%
GTTGTGATCTTTGATATTAC+GGG - chr8_1:9740005-9740024 Msa1177380:intron 30.0%
!! GTATGTTTTTAAATTGCGAG+CGG + chr8_1:9740110-9740129 None:intergenic 30.0%
!!! TCAGCATGAAACATCTTTTT+TGG - chr8_1:9740215-9740234 Msa1177380:intron 30.0%
GTTTACATCATAGAATCACA+TGG + chr8_1:9740298-9740317 None:intergenic 30.0%
! TGGTGCTAATAACTTATAGT+TGG - chr8_1:9740468-9740487 Msa1177380:intron 30.0%
GGTGCTAATAACTTATAGTT+GGG - chr8_1:9740469-9740488 Msa1177380:intron 30.0%
CTAATAACTTATAGTTGGGT+TGG - chr8_1:9740473-9740492 Msa1177380:intron 30.0%
TCAATGTAGGTAAACCTTTA+TGG + chr8_1:9740512-9740531 None:intergenic 30.0%
AGGTTTACCTACATTGAATA+AGG - chr8_1:9740515-9740534 Msa1177380:intron 30.0%
AAAAAACCAGAATATGCACT+TGG + chr8_1:9740638-9740657 None:intergenic 30.0%
!!! TTATAGTGATTTTTTAGGGC+AGG - chr8_1:9740715-9740734 Msa1177380:intron 30.0%
!!! TATAGTGATTTTTTAGGGCA+GGG - chr8_1:9740716-9740735 Msa1177380:intron 30.0%
! GGGATTTAGAACATTATTCT+AGG - chr8_1:9740736-9740755 Msa1177380:intron 30.0%
AACATACTTGTAAAGCAAAG+AGG + chr8_1:9740793-9740812 None:intergenic 30.0%
! AATTTGGGACAAAGAAAATG+AGG + chr8_1:9740888-9740907 None:intergenic 30.0%
AAGAATGCAGACATAACAAT+AGG + chr8_1:9741337-9741356 None:intergenic 30.0%
TAGGTAAACCAAGTATTTGT+GGG + chr8_1:9741379-9741398 None:intergenic 30.0%
ATAGGTAAACCAAGTATTTG+TGG + chr8_1:9741380-9741399 None:intergenic 30.0%
CAATACATGATGCAACAAAT+AGG + chr8_1:9741398-9741417 None:intergenic 30.0%
! TCCAATGATTTTACTCTAAC+AGG - chr8_1:9741458-9741477 Msa1177380:intron 30.0%
ACCTGTTAGAGTAAAATCAT+TGG + chr8_1:9741462-9741481 None:intergenic 30.0%
! AATGATTTTACTCTAACAGG+TGG - chr8_1:9741461-9741480 Msa1177380:intron 30.0%
TTGATCTATATTCCTTGTCA+TGG + chr8_1:9741506-9741525 None:intergenic 30.0%
! AGCTGCTTTAATAAGAAAAG+GGG + chr8_1:9741577-9741596 None:intergenic 30.0%
GCTATTTATGAAGACATGAA+TGG - chr8_1:9741594-9741613 Msa1177380:intron 30.0%
!! AATTATGGTCAAGAGTATCA+AGG + chr8_1:9741647-9741666 None:intergenic 30.0%
TTGATACTCTTGACCATAAT+TGG - chr8_1:9741646-9741665 Msa1177380:intron 30.0%
TTTGATTATGTTGTGATTGG+TGG - chr8_1:9741687-9741706 Msa1177380:intron 30.0%
GAAAGAATTTGACTGATCTA+GGG - chr8_1:9741781-9741800 Msa1177380:CDS 30.0%
TCATTCTTATCCTTAGCAAA+TGG + chr8_1:9742143-9742162 None:intergenic 30.0%
ATGTGACAATAATATGTCCT+TGG - chr8_1:9742256-9742275 Msa1177380:CDS 30.0%
TGTGATCCAATACTTCTATT+AGG - chr8_1:9742326-9742345 Msa1177380:CDS 30.0%
AAACATGCAAAAGACAAATG+AGG - chr8_1:9742389-9742408 Msa1177380:exon 30.0%
TATAGGGAAATGGAAACCAT+TGG + chr8_1:9738846-9738865 None:intergenic 35.0%
!!! TTGTTTCTGTTTCCACCTTT+TGG - chr8_1:9738938-9738957 Msa1177380:three_prime_UTR 35.0%
AGCACTAAGGTCTGAAAATA+TGG - chr8_1:9738981-9739000 Msa1177380:three_prime_UTR 35.0%
GCACTAAGGTCTGAAAATAT+GGG - chr8_1:9738982-9739001 Msa1177380:three_prime_UTR 35.0%
!! TTGCTTTTCGTCTTCTCTTT+TGG - chr8_1:9739076-9739095 Msa1177380:three_prime_UTR 35.0%
! TGCTTTTCGTCTTCTCTTTT+GGG - chr8_1:9739077-9739096 Msa1177380:three_prime_UTR 35.0%
! TCTGATTTTGTCTCTGTTTG+AGG + chr8_1:9739156-9739175 None:intergenic 35.0%
!! ATATTCTGGTGCTTTAAGAG+GGG + chr8_1:9739196-9739215 None:intergenic 35.0%
!! CATATTCTGGTGCTTTAAGA+GGG + chr8_1:9739197-9739216 None:intergenic 35.0%
! TCATATTCTGGTGCTTTAAG+AGG + chr8_1:9739198-9739217 None:intergenic 35.0%
GTTTATGCTGGTGTTTCAAA+TGG - chr8_1:9739326-9739345 Msa1177380:CDS 35.0%
AAATCCATTCTCCCACAAAA+AGG + chr8_1:9739402-9739421 None:intergenic 35.0%
CAACTCTCATTAGTGTACAT+TGG + chr8_1:9739439-9739458 None:intergenic 35.0%
TTTGATGAGGTTCAATCACA+TGG + chr8_1:9739462-9739481 None:intergenic 35.0%
!! CAATAAAGGTACCCTAAATC+AGG + chr8_1:9739505-9739524 None:intergenic 35.0%
! CTGATTTAGGGTACCTTTAT+TGG - chr8_1:9739503-9739522 Msa1177380:CDS 35.0%
TTGGATTCCATCTCCAATAA+AGG + chr8_1:9739519-9739538 None:intergenic 35.0%
!! AACTTCTTTGGGTTGAACTT+TGG + chr8_1:9739556-9739575 None:intergenic 35.0%
AGAAGTTTCTTAGTCTCATG+AGG - chr8_1:9739569-9739588 Msa1177380:CDS 35.0%
TCTCATGAGGAATAAAGCAA+TGG - chr8_1:9739582-9739601 Msa1177380:CDS 35.0%
TGAGATGGAATCACCAATAA+AGG + chr8_1:9739608-9739627 None:intergenic 35.0%
AATTGCAGTTGTGATGCATT+TGG - chr8_1:9739839-9739858 Msa1177380:CDS 35.0%
TGAAACACAAGTGTCTTCAA+AGG + chr8_1:9740160-9740179 None:intergenic 35.0%
TTCAAATGTAGTAACAGGCA+TGG - chr8_1:9740251-9740270 Msa1177380:intron 35.0%
! TGTTGATTATTGAAGACAGC+TGG - chr8_1:9740448-9740467 Msa1177380:intron 35.0%
AACCTTTATGGAAAAGACAG+TGG + chr8_1:9740500-9740519 None:intergenic 35.0%
AGTCACTCCTTATTCAATGT+AGG + chr8_1:9740525-9740544 None:intergenic 35.0%
!! TTAGAACATTATTCTAGGGC+AGG - chr8_1:9740741-9740760 Msa1177380:intron 35.0%
!! TAGAACATTATTCTAGGGCA+GGG - chr8_1:9740742-9740761 Msa1177380:intron 35.0%
AGGTAAACCAAGTATTTGTG+GGG + chr8_1:9741378-9741397 None:intergenic 35.0%
ACTTCACACTCTCAGTAATA+TGG - chr8_1:9741550-9741569 Msa1177380:intron 35.0%
GAATGGAGTTTCATCTTCAA+TGG - chr8_1:9741611-9741630 Msa1177380:intron 35.0%
! TGAATTGGTTGGTCCAATTA+TGG + chr8_1:9741662-9741681 None:intergenic 35.0%
CATGAAAACAACACAGTATC+TGG - chr8_1:9741741-9741760 Msa1177380:CDS 35.0%
AGATCAGTCAAATTCTTTCC+AGG + chr8_1:9741780-9741799 None:intergenic 35.0%
GGAAAGAATTTGACTGATCT+AGG - chr8_1:9741780-9741799 Msa1177380:CDS 35.0%
! ATCACTTTGAGAATGGTGAA+TGG - chr8_1:9741901-9741920 Msa1177380:CDS 35.0%
GATGTAGATTCTATCATGAG+AGG - chr8_1:9741984-9742003 Msa1177380:CDS 35.0%
! TGGTGTGAACTTGAAACTTT+TGG - chr8_1:9742055-9742074 Msa1177380:intron 35.0%
TCTTATCCTTAGCAAATGGT+TGG + chr8_1:9742139-9742158 None:intergenic 35.0%
! TGTTTACATTGGTGTTTACC+AGG - chr8_1:9742179-9742198 Msa1177380:CDS 35.0%
! GCTCAACCTAATAGAAGTAT+TGG + chr8_1:9742335-9742354 None:intergenic 35.0%
TACTACTTGACAACACCGTT+TGG - chr8_1:9738871-9738890 Msa1177380:three_prime_UTR 40.0%
!! CAGAAACAAGCTTTGGTGTT+TGG + chr8_1:9738927-9738946 None:intergenic 40.0%
GTGGAAACAGAAACAAGCTT+TGG + chr8_1:9738934-9738953 None:intergenic 40.0%
!! GCAGCATCATTTTTCTTTGC+TGG - chr8_1:9739051-9739070 Msa1177380:three_prime_UTR 40.0%
! GATTTTGTCTCTGTTTGAGG+AGG + chr8_1:9739153-9739172 None:intergenic 40.0%
CAGAGCAAAAACTCTCTGAA+TGG - chr8_1:9739237-9739256 Msa1177380:CDS 40.0%
! TAGGGTACCTTTATTGGAGA+TGG - chr8_1:9739509-9739528 Msa1177380:CDS 40.0%
CTGTGAGAGAATGCAAAGTA+GGG + chr8_1:9739647-9739666 None:intergenic 40.0%
! ACAAAAGAGTGCACTTGAGT+AGG + chr8_1:9739919-9739938 None:intergenic 40.0%
CTGTAGTTGCAGTTACGATA+TGG - chr8_1:9740047-9740066 Msa1177380:intron 40.0%
TGGTTGTAAAATCTCGACGT+TGG - chr8_1:9740067-9740086 Msa1177380:intron 40.0%
GGTTGTAAAATCTCGACGTT+GGG - chr8_1:9740068-9740087 Msa1177380:intron 40.0%
ACACAAGTGTCTTCAAAGGT+TGG + chr8_1:9740156-9740175 None:intergenic 40.0%
! GTCCACTGTCTTTTCCATAA+AGG - chr8_1:9740495-9740514 Msa1177380:intron 40.0%
CTCATTCCAAGTGCATATTC+TGG - chr8_1:9740629-9740648 Msa1177380:intron 40.0%
CTTGTAAAGCAAAGAGGCAA+TGG + chr8_1:9740787-9740806 None:intergenic 40.0%
! TGCTTATAATTTGGGACGGA+GGG + chr8_1:9740859-9740878 None:intergenic 40.0%
! TTGCTTATAATTTGGGACGG+AGG + chr8_1:9740860-9740879 None:intergenic 40.0%
TTGCTTATAATATGGGACGG+AGG - chr8_1:9741147-9741166 Msa1177380:intron 40.0%
TGCTTATAATATGGGACGGA+GGG - chr8_1:9741148-9741167 Msa1177380:intron 40.0%
ATTGGTGTGCATTCTTTGAG+TGG - chr8_1:9741302-9741321 Msa1177380:intron 40.0%
TCTTTGTCCCCACAAATACT+TGG - chr8_1:9741368-9741387 Msa1177380:intron 40.0%
! GAGAGTGTGAAGTTATGAGA+GGG + chr8_1:9741543-9741562 None:intergenic 40.0%
! TGAGAGTGTGAAGTTATGAG+AGG + chr8_1:9741544-9741563 None:intergenic 40.0%
GATTATGTTGTGATTGGTGG+TGG - chr8_1:9741690-9741709 Msa1177380:intron 40.0%
!! TTGTGATTGGTGGTGGAAAA+TGG - chr8_1:9741697-9741716 Msa1177380:intron 40.0%
! ACACCAGATCACTTTGAGAA+TGG - chr8_1:9741894-9741913 Msa1177380:CDS 40.0%
TCACCATTCTCAAAGTGATC+TGG + chr8_1:9741900-9741919 None:intergenic 40.0%
GAGAATGGTGAATGGTTTAG+TGG - chr8_1:9741909-9741928 Msa1177380:CDS 40.0%
AATGGTGAATGGTTTAGTGG+AGG - chr8_1:9741912-9741931 Msa1177380:CDS 40.0%
ATGGTGAATGGTTTAGTGGA+GGG - chr8_1:9741913-9741932 Msa1177380:CDS 40.0%
TCGATTTCACCCTCTTTGAA+GGG + chr8_1:9741957-9741976 None:intergenic 40.0%
! ATCGATTTCACCCTCTTTGA+AGG + chr8_1:9741958-9741977 None:intergenic 40.0%
TGAAGTTCAAGAGTTTGCGA+AGG - chr8_1:9742010-9742029 Msa1177380:intron 40.0%
CTTTCATTGCTTAGACCAGA+TGG - chr8_1:9742089-9742108 Msa1177380:intron 40.0%
TAGCAAATGGTTGGAATTGC+CGG + chr8_1:9742130-9742149 None:intergenic 40.0%
! GCAATTCCAACCATTTGCTA+AGG - chr8_1:9742130-9742149 Msa1177380:intron 40.0%
! TACCAGGACCAATTGATTCA+TGG - chr8_1:9742195-9742214 Msa1177380:CDS 40.0%
TTCCATGAATCAATTGGTCC+TGG + chr8_1:9742200-9742219 None:intergenic 40.0%
CATGCAAAAGACAAATGAGG+TGG - chr8_1:9742392-9742411 Msa1177380:exon 40.0%
TTTGTCTCTGTTTGAGGAGG+AGG + chr8_1:9739150-9739169 None:intergenic 45.0%
! GTGACCTTTTTGTGGGAGAA+TGG - chr8_1:9739395-9739414 Msa1177380:CDS 45.0%
TGCAAAGTAGGGACTGAACA+TGG + chr8_1:9739636-9739655 None:intergenic 45.0%
CCTGTGAGAGAATGCAAAGT+AGG + chr8_1:9739648-9739667 None:intergenic 45.0%
CCTACTTTGCATTCTCTCAC+AGG - chr8_1:9739645-9739664 Msa1177380:CDS 45.0%
!! GTGTCTTCAAAGGTTGGTGA+GGG + chr8_1:9740150-9740169 None:intergenic 45.0%
!! AGTGTCTTCAAAGGTTGGTG+AGG + chr8_1:9740151-9740170 None:intergenic 45.0%
GACCATGCTTCATGATCGAT+GGG + chr8_1:9740348-9740367 None:intergenic 45.0%
TGACCATGCTTCATGATCGA+TGG + chr8_1:9740349-9740368 None:intergenic 45.0%
TGTTGAGGTCTACCATGACA+AGG - chr8_1:9741491-9741510 Msa1177380:intron 45.0%
TCGAACTGTACCCTTCAAAG+AGG - chr8_1:9741944-9741963 Msa1177380:CDS 45.0%
CGAACTGTACCCTTCAAAGA+GGG - chr8_1:9741945-9741964 Msa1177380:CDS 45.0%
TCGTCACAAGGATCTGAGAA+TGG - chr8_1:9742035-9742054 Msa1177380:intron 45.0%
AATGGTTGGAATTGCCGGTA+AGG + chr8_1:9742125-9742144 None:intergenic 45.0%
GTTGAGCTGCATTGTGTACA+TGG - chr8_1:9742348-9742367 Msa1177380:CDS 45.0%
CAGCTTGAGTGACCAAAAGG+TGG + chr8_1:9738953-9738972 None:intergenic 50.0%
! CACCTTTTGGTCACTCAAGC+TGG - chr8_1:9738951-9738970 Msa1177380:three_prime_UTR 50.0%
CACCAGCTTGAGTGACCAAA+AGG + chr8_1:9738956-9738975 None:intergenic 50.0%
!! AGCTGGTGAAGAGAGCACTA+AGG - chr8_1:9738968-9738987 Msa1177380:three_prime_UTR 50.0%
CTGAACATGGTTGCGTGAGA+TGG + chr8_1:9739623-9739642 None:intergenic 50.0%
AGCCCATCGATCATGAAGCA+TGG - chr8_1:9740343-9740362 Msa1177380:intron 50.0%
TCATGGTAGACCTCAACAGC+TGG + chr8_1:9741489-9741508 None:intergenic 50.0%
TCTGGCTGTCATTACTGTCC+TGG - chr8_1:9741759-9741778 Msa1177380:CDS 50.0%
TTTGCGAAGGCTTCGTCACA+AGG - chr8_1:9742023-9742042 Msa1177380:intron 50.0%
CTTAGACCAGATGGACATCC+AGG - chr8_1:9742098-9742117 Msa1177380:intron 50.0%
TAAGGTCCTGGATGTCCATC+TGG + chr8_1:9742107-9742126 None:intergenic 50.0%
ATGGACATCCAGGACCTTAC+CGG - chr8_1:9742108-9742127 Msa1177380:intron 50.0%
GTTTGAGGAGGAGGAGGAGA+AGG + chr8_1:9739141-9739160 None:intergenic 55.0%
GTCTCTGTTTGAGGAGGAGG+AGG + chr8_1:9739147-9739166 None:intergenic 55.0%
ACAGGTGGAACCAGCTGTTG+AGG - chr8_1:9741476-9741495 Msa1177380:intron 55.0%
TGGAATTGCCGGTAAGGTCC+TGG + chr8_1:9742119-9742138 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 9738820 9742580 9738820 ID=Msa1177380;Name=Msa1177380
chr8_1 mRNA 9738820 9742580 9738820 ID=Msa1177380-mRNA-1;Parent=Msa1177380;Name=Msa1177380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=180|1|1|1|1|1|3|327|438
chr8_1 exon 9738820 9739920 9738820 ID=Msa1177380-mRNA-1:exon:3367;Parent=Msa1177380-mRNA-1
chr8_1 exon 9741734 9742017 9741734 ID=Msa1177380-mRNA-1:exon:3366;Parent=Msa1177380-mRNA-1
chr8_1 exon 9742142 9742580 9742142 ID=Msa1177380-mRNA-1:exon:3365;Parent=Msa1177380-mRNA-1
chr8_1 five_prime_UTR 9742401 9742580 9742401 ID=Msa1177380-mRNA-1:five_prime_utr;Parent=Msa1177380-mRNA-1
chr8_1 CDS 9742142 9742400 9742142 ID=Msa1177380-mRNA-1:cds;Parent=Msa1177380-mRNA-1
chr8_1 CDS 9741734 9742017 9741734 ID=Msa1177380-mRNA-1:cds;Parent=Msa1177380-mRNA-1
chr8_1 CDS 9739147 9739920 9739147 ID=Msa1177380-mRNA-1:cds;Parent=Msa1177380-mRNA-1
chr8_1 three_prime_UTR 9738820 9739146 9738820 ID=Msa1177380-mRNA-1:three_prime_utr;Parent=Msa1177380-mRNA-1
Gene Sequence

>Msa1177380

ATGGGCTCATTGTTTTCACTGCAAAATCACAACCTTTTCTGTGTTAAATTTGCAGCATCATTTTTCTTTGCTGGTCTTGCTTTTCGTCTTCTCTTTTGGGATTCATTCAGTTTATCATCATTTGTAGTGATACAGATACCTTCTCCTCCTCCTCCTCAAACAGAGACAAAATCAGAGTCTTCTGTTGTCTCTTCCCCTCTTAAAGCACCAGAATATGATGAATTTCAAGTAAACAATCAGAGCAAAAACTCTCTGAATGGTACAAGAAAATGTGACCTTTTTGTGGGAGAATGGATTTCTGATCTATCTGAACCAATGTACACTAATGAGAGTTGCCATGTGATTGAACCTCATCAAAATTGTATGAAAAATGGAAGACCTGATTTAGGGTACCTTTATTGGAGATGGAATCCAAAAGATTGTGAATTACCAAAGTTCAACCCAAAGAAGTTTCTTAGTCTCATGAGGAATAAAGCAATGGCCTTTATTGGTGATTCCATCTCACGCAACCATGTTCAGTCCCTACTTTGCATTCTCTCACAGGTGGAACCAGCTGTTGAGGTCTACCATGACAAGGAATATAGATCAAAGATATGGAAATTTCCCTCTCATAACTTCACACTCTCAGTAATATGGACCCCTTTTCTTATTAAAGCAGCTATTTATGAAGACATGAATGGAGTTTCATCTTCAATGGTTCAACTTCACCTTGATACTCTTGACCATAATTGGACCAACCAATTCAACAATTTTGATTATGTTGTGATTGGTGGTGGAAAATGGTTTCTCAAATCTGCAATATTTCATGAAAACAACACAGTATCTGGCTGTCATTACTGTCCTGGAAAGAATTTGACTGATCTAGGGTTCGACTACGCGTACCGAAAAGCATTACAACTTGTTTTCAACTTCTTCACAAAGTCTAGCCATAATGCAACTGTTTTGTTTAGAACTACAACACCAGATCACTTTGAGAATGGTGAATGGTTTAGTGGAGGGTATTGTAATCGAACTGTACCCTTCAAAGAGGGTGAAATCGATATGATAGATGTAGATTCTATCATGAGAGGTATTGAAGTTCAAGAGTTTGCGAAGGCTTCGTCACAAGGATCTGAGAATGGTGTGAACTTGAAACTTTTGGATACAACTTTTCTTTCATTGCTTAGACCAGATGGACATCCAGGACCTTACCGGCAATTCCAACCATTTGCTAAGGATAAGAATGATAAAGTTCAGAATGATTGTTTACATTGGTGTTTACCAGGACCAATTGATTCATGGAATGATATAGTAATGGAAATGCTAGTTAATGCTTAG
Protein sequence

>Msa1177380

MGSLFSLQNHNLFCVKFAASFFFAGLAFRLLFWDSFSLSSFVVIQIPSPPPPQTETKSESSVVSSPLKAPEYDEFQVNNQSKNSLNGTRKCDLFVGEWISDLSEPMYTNESCHVIEPHQNCMKNGRPDLGYLYWRWNPKDCELPKFNPKKFLSLMRNKAMAFIGDSISRNHVQSLLCILSQVEPAVEVYHDKEYRSKIWKFPSHNFTLSVIWTPFLIKAAIYEDMNGVSSSMVQLHLDTLDHNWTNQFNNFDYVVIGGGKWFLKSAIFHENNTVSGCHYCPGKNLTDLGFDYAYRKALQLVFNFFTKSSHNATVLFRTTTPDHFENGEWFSGGYCNRTVPFKEGEIDMIDVDSIMRGIEVQEFAKASSQGSENGVNLKLLDTTFLSLLRPDGHPGPYRQFQPFAKDKNDKVQNDCLHWCLPGPIDSWNDIVMEMLVNA*