AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1236760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236760 MtrunA17_Chr8g0347321 94.570 442 24 0 6 447 1 442 0.0 879
Msa1236760 MtrunA17_Chr8g0387921 60.698 430 151 3 19 447 10 422 0.0 545
Msa1236760 MtrunA17_Chr6g0456691 43.781 402 214 5 48 444 25 419 1.31e-119 356
Msa1236760 MtrunA17_Chr5g0414061 43.750 352 186 7 99 444 93 438 5.67e-103 313
Msa1236760 MtrunA17_Chr5g0414041 46.067 356 178 7 97 444 84 433 1.10e-102 313
Msa1236760 MtrunA17_Chr5g0414091 41.880 351 194 5 100 444 85 431 4.48e-100 306
Msa1236760 MtrunA17_Chr7g0226991 40.909 352 195 6 100 444 57 402 7.12e-97 296
Msa1236760 MtrunA17_Chr3g0140371 40.456 351 195 6 100 444 18 360 1.22e-96 295
Msa1236760 MtrunA17_Chr8g0391481 40.169 356 200 6 99 447 26 375 5.45e-95 291
Msa1236760 MtrunA17_Chr5g0414051 41.076 353 193 7 100 444 75 420 7.43e-95 292
Msa1236760 MtrunA17_Chr6g0456681 40.793 353 199 5 97 444 61 408 3.81e-91 282
Msa1236760 MtrunA17_Chr6g0451321 37.533 381 221 6 73 444 85 457 1.56e-90 282
Msa1236760 MtrunA17_Chr2g0283851 38.611 360 192 11 101 445 56 401 2.48e-84 264
Msa1236760 MtrunA17_Chr1g0188191 35.025 394 236 11 60 444 199 581 2.39e-74 244
Msa1236760 MtrunA17_Chr6g0476041 35.694 353 214 8 100 444 167 514 2.94e-73 239
Msa1236760 MtrunA17_Chr7g0221281 39.749 239 137 4 208 444 3 236 8.61e-64 206
Msa1236760 MtrunA17_Chr7g0258851 31.755 359 216 10 99 445 247 588 5.83e-52 184
Msa1236760 MtrunA17_Chr7g0259711 32.877 365 204 14 100 445 91 433 2.12e-51 179
Msa1236760 MtrunA17_Chr1g0175671 31.148 366 209 10 99 445 169 510 1.45e-50 179
Msa1236760 MtrunA17_Chr2g0287901 30.252 357 223 10 100 445 97 438 1.65e-49 174
Msa1236760 MtrunA17_Chr8g0368461 28.431 408 246 12 63 445 143 529 1.57e-48 174
Msa1236760 MtrunA17_Chr4g0071391 30.137 365 212 11 99 445 108 447 7.33e-48 170
Msa1236760 MtrunA17_Chr5g0413271 27.649 387 242 11 64 445 124 477 8.98e-47 168
Msa1236760 MtrunA17_Chr5g0414081 39.698 199 112 4 253 444 2 199 2.08e-46 159
Msa1236760 MtrunA17_Chr5g0430371 31.667 360 223 10 95 444 53 399 2.49e-46 165
Msa1236760 MtrunA17_Chr7g0269991 31.492 362 204 13 100 446 137 469 2.72e-46 166
Msa1236760 MtrunA17_Chr8g0360521 30.899 356 218 13 100 444 71 409 7.34e-45 161
Msa1236760 MtrunA17_Chr7g0221271 51.562 128 62 0 99 226 78 205 1.31e-44 154
Msa1236760 MtrunA17_Chr1g0171171 28.453 362 227 10 88 444 41 375 1.35e-43 157
Msa1236760 MtrunA17_Chr1g0213281 30.052 386 237 15 74 445 150 516 1.57e-43 160
Msa1236760 MtrunA17_Chr3g0105301 31.250 352 217 12 100 444 43 376 1.61e-43 157
Msa1236760 MtrunA17_Chr8g0384151 30.278 360 205 13 99 444 89 416 1.82e-43 158
Msa1236760 MtrunA17_Chr3g0113671 27.731 357 237 10 100 446 106 451 4.07e-43 157
Msa1236760 MtrunA17_Chr7g0243301 28.571 378 238 14 85 446 50 411 4.67e-42 154
Msa1236760 MtrunA17_Chr4g0005491 30.000 360 217 15 99 440 61 403 1.02e-41 152
Msa1236760 MtrunA17_Chr4g0068111 29.805 359 225 11 100 447 114 456 2.72e-41 152
Msa1236760 MtrunA17_Chr3g0114101 29.086 361 221 13 100 444 89 430 1.50e-39 147
Msa1236760 MtrunA17_Chr3g0091031 28.883 367 215 13 89 446 21 350 2.22e-39 145
Msa1236760 MtrunA17_Chr5g0437601 28.571 357 228 12 100 444 83 424 4.30e-39 146
Msa1236760 MtrunA17_Chr8g0384421 27.358 424 242 13 58 444 78 472 1.05e-38 145
Msa1236760 MtrunA17_Chr3g0085081 28.610 367 216 13 89 446 21 350 1.25e-38 143
Msa1236760 MtrunA17_Chr4g0005481 27.654 358 227 10 100 444 108 446 8.44e-38 142
Msa1236760 MtrunA17_Chr4g0006991 27.095 358 234 10 99 444 85 427 8.77e-38 142
Msa1236760 MtrunA17_Chr2g0283581 29.830 352 211 12 97 444 39 358 2.49e-37 139
Msa1236760 MtrunA17_Chr3g0085071 27.966 354 223 9 89 440 36 359 3.15e-37 139
Msa1236760 MtrunA17_Chr1g0210771 27.595 395 232 17 67 444 25 382 9.67e-37 138
Msa1236760 MtrunA17_Chr7g0221291 54.639 97 44 0 96 192 75 171 7.89e-36 130
Msa1236760 MtrunA17_Chr3g0097891 28.329 353 214 11 100 445 31 351 6.84e-35 132
Msa1236760 MtrunA17_Chr6g0455901 26.807 429 260 15 38 444 20 416 7.06e-35 134
Msa1236760 MtrunA17_Chr3g0126021 28.278 389 227 14 73 445 108 460 2.07e-34 134
Msa1236760 MtrunA17_Chr7g0242701 25.698 358 239 11 99 444 85 427 2.40e-34 133
Msa1236760 MtrunA17_Chr2g0325481 27.654 358 211 10 97 444 47 366 7.06e-34 130
Msa1236760 MtrunA17_Chr2g0314801 27.684 354 216 11 99 444 32 353 1.03e-33 129
Msa1236760 MtrunA17_Chr4g0045941 26.703 367 206 12 97 445 30 351 7.19e-33 127
Msa1236760 MtrunA17_Chr4g0070341 26.536 407 246 14 62 444 94 471 8.27e-33 129
Msa1236760 MtrunA17_Chr4g0049421 25.753 365 237 11 100 447 48 395 1.34e-32 127
Msa1236760 MtrunA17_Chr5g0437291 25.762 361 242 13 100 446 165 513 2.53e-32 128
Msa1236760 MtrunA17_Chr5g0413851 27.179 390 237 14 63 445 11 360 5.00e-32 125
Msa1236760 MtrunA17_Chr4g0045951 27.198 364 202 12 100 445 45 363 2.78e-31 123
Msa1236760 MtrunA17_Chr4g0041011 26.273 373 216 14 84 444 38 363 9.42e-29 116
Msa1236760 MtrunA17_Chr2g0314791 26.230 366 216 12 93 445 22 346 3.28e-27 111
Msa1236760 MtrunA17_Chr7g0275501 68.056 72 18 2 372 443 2 68 5.18e-26 100
Msa1236760 MtrunA17_Chr1g0178081 32.093 215 127 7 84 282 33 244 4.80e-24 102
Msa1236760 MtrunA17_Chr1g0209921 44.330 97 52 2 99 193 43 139 1.27e-19 88.6
Msa1236760 MtrunA17_Chr2g0287911 46.552 58 24 1 98 155 59 109 2.19e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236760 AT1G01430.1 57.078 438 172 8 16 446 21 449 1.60e-177 504
Msa1236760 AT4G01080.1 57.311 424 139 8 25 446 49 432 8.03e-171 487
Msa1236760 AT4G23790.1 50.569 439 199 6 13 447 6 430 1.25e-159 458
Msa1236760 AT4G11090.1 49.886 437 202 6 13 447 7 428 7.72e-159 456
Msa1236760 AT5G15890.1 45.665 346 177 5 100 444 187 522 2.30e-111 338
Msa1236760 AT1G70230.1 43.931 346 180 6 100 444 79 411 1.20e-106 322
Msa1236760 AT3G02440.1 43.305 351 188 5 100 446 127 470 3.71e-103 315
Msa1236760 AT3G02440.2 43.305 351 188 5 100 446 135 478 3.83e-103 316
Msa1236760 AT5G15900.1 40.608 362 207 4 86 444 53 409 1.67e-101 310
Msa1236760 AT5G15900.2 40.608 362 207 4 86 444 72 428 2.43e-101 310
Msa1236760 AT3G28150.1 40.286 350 197 4 99 444 69 410 1.81e-98 301
Msa1236760 AT5G51640.1 35.955 356 214 8 99 444 137 488 1.41e-72 237
Msa1236760 AT4G25360.1 34.877 367 225 8 87 444 163 524 1.20e-71 235
Msa1236760 AT4G25360.2 34.877 367 225 8 87 444 163 524 1.20e-71 235
Msa1236760 AT5G19160.1 32.031 384 227 13 80 445 78 445 4.46e-54 187
Msa1236760 AT3G06080.2 31.593 364 222 13 95 446 99 447 1.49e-51 181
Msa1236760 AT3G12060.1 29.825 399 236 13 67 446 165 538 2.66e-51 182
Msa1236760 AT5G06700.1 30.273 403 228 12 61 445 228 595 9.35e-50 179
Msa1236760 AT1G60790.1 29.201 363 225 11 100 447 190 535 2.70e-47 171
Msa1236760 AT5G20590.1 31.099 373 225 13 86 445 127 480 4.41e-47 169
Msa1236760 AT5G49340.1 30.769 364 213 9 100 445 100 442 8.88e-47 167
Msa1236760 AT3G11570.1 31.503 346 204 11 113 445 95 420 3.65e-46 165
Msa1236760 AT5G64020.1 30.811 370 213 11 100 444 57 408 9.14e-46 164
Msa1236760 AT1G48880.1 30.163 368 207 12 92 444 107 439 1.49e-45 164
Msa1236760 AT5G06230.2 30.079 379 220 13 90 446 11 366 5.27e-45 161
Msa1236760 AT5G06230.1 30.079 379 220 13 90 446 52 407 1.15e-44 161
Msa1236760 AT1G73140.1 29.330 358 227 10 100 447 67 408 5.91e-44 159
Msa1236760 AT2G30010.1 28.969 359 225 10 100 445 56 397 6.09e-44 159
Msa1236760 AT3G62390.1 30.595 353 206 13 99 437 137 464 1.18e-43 159
Msa1236760 AT2G30010.2 28.969 359 225 10 100 445 99 440 1.72e-43 158
Msa1236760 AT5G58600.1 29.692 357 219 12 100 445 66 401 9.02e-42 153
Msa1236760 AT3G11030.1 29.213 356 228 12 100 444 106 448 3.76e-40 149
Msa1236760 AT5G64470.2 29.917 361 224 14 100 445 55 401 5.06e-40 148
Msa1236760 AT5G64470.3 29.609 358 223 13 100 445 55 395 7.98e-40 147
Msa1236760 AT2G40150.1 25.895 363 244 10 99 446 70 422 1.63e-39 147
Msa1236760 AT2G30900.1 29.526 359 209 12 100 447 43 368 4.71e-39 145
Msa1236760 AT2G38320.1 29.006 362 230 14 99 446 58 406 6.83e-39 145
Msa1236760 AT2G40160.2 25.935 401 254 11 76 446 38 425 2.05e-38 144
Msa1236760 AT2G40160.1 25.954 393 252 10 76 440 38 419 2.11e-38 144
Msa1236760 AT2G40320.1 25.706 354 242 9 100 444 81 422 2.87e-38 144
Msa1236760 AT3G55990.1 26.816 358 241 11 99 446 139 485 6.69e-38 144
Msa1236760 AT5G01360.2 26.796 362 231 12 99 444 35 378 1.93e-37 140
Msa1236760 AT5G19160.2 31.461 267 163 8 80 334 78 336 2.10e-37 140
Msa1236760 AT2G14530.1 27.778 360 236 10 97 444 59 406 3.77e-37 140
Msa1236760 AT5G01360.1 26.796 362 231 12 99 444 91 434 6.76e-37 140
Msa1236760 AT3G54260.1 28.457 376 226 15 82 446 33 376 9.39e-36 136
Msa1236760 AT3G06080.1 31.907 257 155 8 95 340 99 346 1.11e-35 135
Msa1236760 AT5G20680.6 26.579 380 239 11 82 444 101 457 1.22e-35 137
Msa1236760 AT5G20680.2 26.579 380 239 11 82 444 177 533 2.35e-35 137
Msa1236760 AT5G20680.4 26.579 380 239 11 82 444 195 551 2.68e-35 137
Msa1236760 AT5G20680.1 26.579 380 239 11 82 444 195 551 2.68e-35 137
Msa1236760 AT5G20680.3 26.579 380 239 11 82 444 195 551 2.68e-35 137
Msa1236760 AT5G20680.5 26.579 380 239 11 82 444 195 551 2.68e-35 137
Msa1236760 AT2G42570.1 27.778 360 217 9 96 447 43 367 2.58e-34 132
Msa1236760 AT5G01620.2 26.554 354 239 9 99 444 109 449 3.30e-34 133
Msa1236760 AT5G01620.1 26.554 354 239 9 99 444 109 449 3.30e-34 133
Msa1236760 AT5G01620.3 26.554 354 239 9 99 444 117 457 4.78e-34 133
Msa1236760 AT2G37720.1 27.368 380 225 12 88 444 131 482 1.13e-32 129
Msa1236760 AT1G29050.1 27.507 349 220 9 100 445 61 379 1.73e-32 127
Msa1236760 AT2G38320.2 28.485 330 210 13 130 446 7 323 4.59e-32 125
Msa1236760 AT2G34070.1 26.042 384 239 10 76 444 30 383 1.06e-31 125
Msa1236760 AT1G78710.1 26.503 366 207 15 99 446 37 358 1.23e-31 124
Msa1236760 AT2G31110.2 27.596 366 216 12 92 446 37 364 2.35e-31 124
Msa1236760 AT3G62390.2 30.268 261 159 8 99 347 137 386 5.06e-31 124
Msa1236760 AT3G14850.2 27.119 354 218 11 100 445 34 355 8.79e-31 122
Msa1236760 AT5G58600.2 29.832 238 148 8 100 332 66 289 4.95e-28 113
Msa1236760 AT1G78710.2 25.707 389 186 15 70 446 1 298 3.59e-27 110
Msa1236760 AT2G40160.3 32.544 169 98 2 76 228 38 206 7.29e-27 110
Msa1236760 AT5G06230.3 29.323 266 161 9 90 337 52 308 9.29e-27 110
Msa1236760 AT5G20590.2 26.820 261 170 8 86 334 127 378 3.14e-26 109
Msa1236760 AT5G64470.4 28.358 268 173 10 100 355 55 315 7.53e-26 107
Msa1236760 AT5G64470.1 28.464 267 172 10 100 354 55 314 1.83e-25 106
Msa1236760 AT2G30900.2 30.876 217 121 7 100 307 43 239 3.46e-24 102
Msa1236760 AT2G31110.3 33.133 166 106 1 92 252 37 202 7.93e-24 100
Msa1236760 AT2G34070.2 24.101 278 177 9 171 444 2 249 8.73e-11 62.8

Find 113 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATACTCTTGACCATAAT+TGG 0.140160 8_2:-15940884 Msa1236760:CDS
CTGATTTAGGGTACCTTTAT+TGG 0.167850 8_2:-15942780 Msa1236760:CDS
AATAAAGCAATGGCCTTTAT+TGG 0.211094 8_2:-15942691 Msa1236760:CDS
AGTACTAAGTTCTGAAAATA+TGG 0.230095 8_2:-15943460 Msa1236760:CDS
TTTGGTAATTCACACTCTTT+TGG 0.238518 8_2:+15942748 None:intergenic
CTGAGTCAAACCTCTCTTAA+TGG 0.247940 8_2:-15943207 Msa1236760:intron
ACTTGAAATTCATCATATTC+TGG 0.258772 8_2:+15943237 None:intergenic
TAAACAAAACAGTTGCATTA+TGG 0.267888 8_2:+15940667 None:intergenic
ATGAGACTAAGAAACCTCTT+AGG 0.285683 8_2:+15942718 None:intergenic
CATAATCAAAATTGTTGAAT+TGG 0.296433 8_2:+15940856 None:intergenic
CATGAAAACAACACAGTATC+TGG 0.304134 8_2:-15940789 Msa1236760:CDS
TATATTCATTATAAAATTCA+TGG 0.310544 8_2:+15940036 None:intergenic
TTGGATTCCACCTCCAATAA+AGG 0.316767 8_2:+15942767 None:intergenic
GGAAAGAATTTGACTGATCT+AGG 0.322511 8_2:-15940750 Msa1236760:CDS
TAGCAAATGGTTGGAATTGC+CGG 0.322622 8_2:+15940403 None:intergenic
ACTTCACACTCTCAGTAATA+TGG 0.322961 8_2:-15940980 Msa1236760:CDS
TTGTGATTGGTGGTGGAAAA+TGG 0.329782 8_2:-15940833 Msa1236760:CDS
GTGGAAACAGAAACAAGTTT+TGG 0.331062 8_2:+15943514 None:intergenic
TGGTGTGAACTTGAAACTTT+TGG 0.331395 8_2:-15940475 Msa1236760:CDS
TGAATTGGTTGGTCCAATTA+TGG 0.357146 8_2:+15940871 None:intergenic
AGATCAGTCAAATTCTTTCC+AGG 0.366670 8_2:+15940753 None:intergenic
TCATATTCTGGTGCTTTAAG+AGG 0.390318 8_2:+15943249 None:intergenic
GAATGGAGTTTCATCTTCAA+TGG 0.394596 8_2:-15940919 Msa1236760:CDS
ATGGACATCCAGGACCTTAC+CGG 0.396225 8_2:-15940422 Msa1236760:CDS
GTGACCTATTTGTGGGAGAT+TGG 0.396582 8_2:-15942888 Msa1236760:CDS
TGAGATGGAATCACCAATAA+AGG 0.402777 8_2:+15942678 None:intergenic
AGGAATATAGATCAAAGATA+TGG 0.402990 8_2:-15941019 Msa1236760:CDS
AAAATGGAAGACCTGATTTA+GGG 0.405923 8_2:-15942792 Msa1236760:CDS
ATCAAAATTGTTGAATTGGT+TGG 0.411356 8_2:+15940860 None:intergenic
TACCAGGACCAATTGATTCA+TGG 0.412261 8_2:-15940335 Msa1236760:CDS
AAGTACTTAGTAATTAGTAT+AGG 0.412704 8_2:+15943589 None:intergenic
ATAGCTGCTTTAATAAGAAA+AGG 0.412745 8_2:+15940954 None:intergenic
ATCGATTTCACCCTCTTTGA+AGG 0.413565 8_2:+15940575 None:intergenic
TACCAAAGTTCAACCCTAAG+AGG 0.420431 8_2:-15942732 Msa1236760:CDS
TTTGATTATGTTGTGATTGG+TGG 0.423731 8_2:-15940843 Msa1236760:CDS
AAATCCAATCTCCCACAAAT+AGG 0.426121 8_2:+15942884 None:intergenic
TTTGTCTCAGTTTGAGGAGG+AGG 0.432212 8_2:+15943297 None:intergenic
TAGCTGCTTTAATAAGAAAA+GGG 0.432646 8_2:+15940955 None:intergenic
ATTTAGGGTACCTTTATTGG+AGG 0.441718 8_2:-15942777 Msa1236760:CDS
TAGTAATTAGTATAGGGAAA+TGG 0.442051 8_2:+15943596 None:intergenic
CAATAAAGGTACCCTAAATC+AGG 0.442542 8_2:+15942781 None:intergenic
AGTACTTAGTAATTAGTATA+GGG 0.442996 8_2:+15943590 None:intergenic
ACAAGCTGCATGAATAAAAC+AGG 0.449222 8_2:-15943644 None:intergenic
GAGAATGGTGAATGGTTTAG+TGG 0.451015 8_2:-15940621 Msa1236760:CDS
TCATTCTTATCCTTAGCAAA+TGG 0.464080 8_2:+15940390 None:intergenic
CCTGTGAGAGAATGCAAAGT+AGG 0.465195 8_2:+15942638 None:intergenic
ATATCATTCCATGAATCAAT+TGG 0.466957 8_2:+15940327 None:intergenic
TAGGGTACCTTTATTGGAGG+TGG 0.467433 8_2:-15942774 Msa1236760:CDS
TGTTTACATTGGTGTTTACC+AGG 0.471207 8_2:-15940351 Msa1236760:CDS
AACCTCTTAGGGTTGAACTT+TGG 0.477439 8_2:+15942730 None:intergenic
TAAGGTCCTGGATGTCCATC+TGG 0.479309 8_2:+15940426 None:intergenic
TCTTATCCTTAGCAAATGGT+TGG 0.486799 8_2:+15940394 None:intergenic
GTTGAGCTGCATTGTGTACA+TGG 0.488378 8_2:-15940182 Msa1236760:three_prime_UTR
TCTGGCTGTCATTACTGTCC+TGG 0.491314 8_2:-15940771 Msa1236760:CDS
CTGCAAATTTAACACAGAAA+AGG 0.492588 8_2:+15943409 None:intergenic
AGGAAAATGTGACCTATTTG+TGG 0.494188 8_2:-15942896 Msa1236760:CDS
TGGAATTGCCGGTAAGGTCC+TGG 0.494249 8_2:+15940414 None:intergenic
CAACTCTCATTTGTGTACAT+TGG 0.496355 8_2:+15942847 None:intergenic
CTGAACATGGTTGCGTGAGA+TGG 0.497150 8_2:+15942663 None:intergenic
CTTAGACCAGATGGACATCC+AGG 0.497377 8_2:-15940432 Msa1236760:CDS
GATTATGTTGTGATTGGTGG+TGG 0.497535 8_2:-15940840 Msa1236760:CDS
ATGGTGAATGGTTTAGTGGA+GGG 0.498774 8_2:-15940617 Msa1236760:CDS
CCTACTTTGCATTCTCTCAC+AGG 0.498895 8_2:-15942638 Msa1236760:intron
TCACCATTCTCAAAGTGATC+TGG 0.502058 8_2:+15940633 None:intergenic
CTTTCATTGCTTAGACCAGA+TGG 0.505017 8_2:-15940441 Msa1236760:CDS
AAGTACTTGACAACACCGTT+TGG 0.506230 8_2:-15943574 Msa1236760:five_prime_UTR
CATATTCTGGTGCTTTAAGA+GGG 0.506797 8_2:+15943250 None:intergenic
TCAGTTTGAGGAGGAGGAGA+AGG 0.515278 8_2:+15943303 None:intergenic
ATCACTTTGAGAATGGTGAA+TGG 0.515741 8_2:-15940629 Msa1236760:CDS
GAAAGAATTTGACTGATCTA+GGG 0.517914 8_2:-15940749 Msa1236760:CDS
ATCTTGAGTGACCAAACAAA+AGG 0.520444 8_2:+15943492 None:intergenic
CATAATGACTACAAACCAAA+CGG 0.521452 8_2:+15943559 None:intergenic
TGAGACTAAGAAACCTCTTA+GGG 0.522708 8_2:+15942719 None:intergenic
GCTATTTATGAAGACATGAA+TGG 0.523460 8_2:-15940936 Msa1236760:CDS
TTCCATGAATCAATTGGTCC+TGG 0.529258 8_2:+15940333 None:intergenic
TTGATCTATATTCCTTGTCA+TGG 0.529841 8_2:+15941027 None:intergenic
AATGGTTGGAATTGCCGGTA+AGG 0.530625 8_2:+15940408 None:intergenic
GTACTAAGTTCTGAAAATAT+GGG 0.534616 8_2:-15943459 Msa1236760:CDS
TTCAGAATGATTGTTTACAT+TGG 0.536286 8_2:-15940362 Msa1236760:CDS
GGAAAATGTGACCTATTTGT+GGG 0.536830 8_2:-15942895 Msa1236760:CDS
TCGATTTCACCCTCTTTGAA+GGG 0.541605 8_2:+15940576 None:intergenic
TATAGGGAAATGGAAACCAT+TGG 0.545401 8_2:+15943606 None:intergenic
GAGAGTGTGAAGTTATGAGA+GGG 0.550677 8_2:+15940990 None:intergenic
ACACCAGATCACTTTGAGAA+TGG 0.551530 8_2:-15940636 Msa1236760:CDS
ATGTGACAATAATATGTCCT+TGG 0.552768 8_2:-15940274 Msa1236760:three_prime_UTR
TTTGATGAGGTTCAATCACA+TGG 0.559417 8_2:+15942824 None:intergenic
TTTGCGAAGGCTTCGTCACA+AGG 0.561209 8_2:-15940507 Msa1236760:CDS
GCAATTCCAACCATTTGCTA+AGG 0.562296 8_2:-15940400 Msa1236760:CDS
TTCATGGAATGATATAGTAA+TGG 0.569254 8_2:-15940319 Msa1236760:CDS
TCGAACTGTACCCTTCAAAG+AGG 0.572283 8_2:-15940586 Msa1236760:CDS
TCATGGTAGACCTCAACAGC+TGG 0.573403 8_2:+15941044 None:intergenic
CTGTGAGAGAATGCAAAGTA+GGG 0.576431 8_2:+15942639 None:intergenic
TCGTCACAAGGATCTGAGAA+TGG 0.577529 8_2:-15940495 Msa1236760:CDS
AGAGGTTTCTTAGTCTCATG+AGG 0.579769 8_2:-15942714 Msa1236760:CDS
TTGAGTGACCAAACAAAAGG+TGG 0.580078 8_2:+15943495 None:intergenic
AACGATAATTATTGTAACCA+AGG 0.584871 8_2:+15940257 None:intergenic
TGAGAGTGTGAAGTTATGAG+AGG 0.587200 8_2:+15940989 None:intergenic
AAACATGCAAAAGACAAATG+AGG 0.588479 8_2:-15940141 Msa1236760:three_prime_UTR
CGAACTGTACCCTTCAAAGA+GGG 0.598509 8_2:-15940585 Msa1236760:CDS
AAGTTTCTTACCATTAAGAG+AGG 0.601271 8_2:+15943197 None:intergenic
ACAGGTGGAACCAGCTGTTG+AGG 0.602644 8_2:-15941054 Msa1236760:intron
AGCTGCTTTAATAAGAAAAG+GGG 0.606112 8_2:+15940956 None:intergenic
AATTATGGTCAAGAGTATCA+AGG 0.611965 8_2:+15940886 None:intergenic
TGCAAAGTAGGGACTGAACA+TGG 0.618165 8_2:+15942650 None:intergenic
TCTCATGAGGAATAAAGCAA+TGG 0.629275 8_2:-15942701 Msa1236760:CDS
GATGTAGATTCTATCATGAG+AGG 0.632190 8_2:-15940546 Msa1236760:CDS
ATATTCTGGTGCTTTAAGAG+GGG 0.646371 8_2:+15943251 None:intergenic
TGAAGTTCAAGAGTTTGCGA+AGG 0.647288 8_2:-15940520 Msa1236760:CDS
TAAGAGGGGAAGAGACAACA+AGG 0.655200 8_2:+15943265 None:intergenic
CATGCAAAAGACAAATGAGG+TGG 0.676761 8_2:-15940138 Msa1236760:three_prime_UTR
AATGGTGAATGGTTTAGTGG+AGG 0.679799 8_2:-15940618 Msa1236760:CDS
TGTTGAGGTCTACCATGACA+AGG 0.690643 8_2:-15941039 Msa1236760:CDS
AAGAGGGGAAGAGACAACAA+GGG 0.757867 8_2:+15943266 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTAAAAATAAAAT+TGG - chr8_2:15942405-15942424 Msa1236760:intron 0.0%
!!! CTCATTTTAATTTAAAATTT+TGG + chr8_2:15941650-15941669 None:intergenic 10.0%
!!! CAAAATTTTAAATTAAAATG+AGG - chr8_2:15941648-15941667 Msa1236760:intron 10.0%
!! TATATTCATTATAAAATTCA+TGG + chr8_2:15943618-15943637 None:intergenic 10.0%
!!! TTACTTAAAATTTTCTAACA+TGG - chr8_2:15940539-15940558 Msa1236760:CDS 15.0%
!! ATTTAATCATTCAAACAAAA+AGG + chr8_2:15941090-15941109 None:intergenic 15.0%
!!! TTATTTGAAAATTTTACTCT+TGG - chr8_2:15941332-15941351 Msa1236760:intron 15.0%
!!! AAATTTTACAAGCTAAAAAA+AGG + chr8_2:15941559-15941578 None:intergenic 15.0%
!! ATGTAAAATTGTTCAAAAAT+TGG - chr8_2:15942081-15942100 Msa1236760:intron 15.0%
!!! AATTGTTATATAGTTTTTGA+GGG + chr8_2:15942158-15942177 None:intergenic 15.0%
!!! TAATTGTTATATAGTTTTTG+AGG + chr8_2:15942159-15942178 None:intergenic 15.0%
!!! TGATTTAATACAAATTTTGT+AGG + chr8_2:15942556-15942575 None:intergenic 15.0%
!! AGTACTTAGTAATTAGTATA+GGG + chr8_2:15940064-15940083 None:intergenic 20.0%
!! AAGTACTTAGTAATTAGTAT+AGG + chr8_2:15940065-15940084 None:intergenic 20.0%
!!! TAAGAAACTTTTTTTTCCTA+TGG - chr8_2:15940467-15940486 Msa1236760:CDS 20.0%
!! AATATATTCACAAAAACCAT+AGG + chr8_2:15940486-15940505 None:intergenic 20.0%
!!! AAAATTTTCTAACATGGTTA+TGG - chr8_2:15940545-15940564 Msa1236760:CDS 20.0%
!! ATGTACTTTAACAATTGTTT+AGG - chr8_2:15940729-15940748 Msa1236760:CDS 20.0%
!!! TTTTTCATACAATTTTGATG+AGG + chr8_2:15940843-15940862 None:intergenic 20.0%
!! CATCAAAATTGTATGAAAAA+TGG - chr8_2:15940843-15940862 Msa1236760:CDS 20.0%
!!! AAATTTTCAAATAAAACGCT+AGG + chr8_2:15941326-15941345 None:intergenic 20.0%
!!! CATGTTATGTCATTTTATAT+AGG - chr8_2:15941769-15941788 Msa1236760:intron 20.0%
!!! ATATTCTGGTTTTTTAAACA+TGG - chr8_2:15942019-15942038 Msa1236760:intron 20.0%
!!! TAGAATTTAGAACATATTGT+AGG - chr8_2:15942177-15942196 Msa1236760:intron 20.0%
!!! AGAATTTAGAACATATTGTA+GGG - chr8_2:15942178-15942197 Msa1236760:intron 20.0%
!!! TTGTATTTGTTAGTTTTAGT+TGG + chr8_2:15942296-15942315 None:intergenic 20.0%
!! CATTGAAACAATAAATTAAC+TGG - chr8_2:15942373-15942392 Msa1236760:intron 20.0%
!! CATAATCAAAATTGTTGAAT+TGG + chr8_2:15942798-15942817 None:intergenic 20.0%
!!! AATTTTGATTATGTTGTGAT+TGG - chr8_2:15942805-15942824 Msa1236760:CDS 20.0%
!!! ATAATTATCGTTTTGAATTC+AGG - chr8_2:15943405-15943424 Msa1236760:CDS 20.0%
!! GTGAAAAAAAAACATGAAAT+GGG + chr8_2:15943596-15943615 None:intergenic 20.0%
! TAGTAATTAGTATAGGGAAA+TGG + chr8_2:15940058-15940077 None:intergenic 25.0%
!!! AGTACTAAGTTCTGAAAATA+TGG - chr8_2:15940191-15940210 Msa1236760:intron 25.0%
!!! GTACTAAGTTCTGAAAATAT+GGG - chr8_2:15940192-15940211 Msa1236760:intron 25.0%
! ACTTGAAATTCATCATATTC+TGG + chr8_2:15940417-15940436 None:intergenic 25.0%
!!! TTCACACATTTTTGTTGTTT+TGG - chr8_2:15940580-15940599 Msa1236760:CDS 25.0%
! TTTAACAATTGTTTAGGTAC+AGG - chr8_2:15940735-15940754 Msa1236760:CDS 25.0%
!! TATTGTTAACTTTGTTGGTT+TGG - chr8_2:15941036-15941055 Msa1236760:CDS 25.0%
!! TAGAATATCAAGTTGCAAAT+TGG + chr8_2:15941065-15941084 None:intergenic 25.0%
! CTTGATATTGTGGATAAATA+CGG - chr8_2:15941170-15941189 Msa1236760:intron 25.0%
! AAGTGTAGATAATATGATTG+TGG - chr8_2:15941250-15941269 Msa1236760:intron 25.0%
! AAATAAAACGCTAGGAATTT+AGG + chr8_2:15941318-15941337 None:intergenic 25.0%
! TGTTGTGATCTTTGATATTA+CGG - chr8_2:15941375-15941394 Msa1236760:intron 25.0%
!! TTTTACAAGCTAAAAAAAGG+TGG + chr8_2:15941556-15941575 None:intergenic 25.0%
! ATGTATTCAAATGTAGTAAC+AGG - chr8_2:15941617-15941636 Msa1236760:intron 25.0%
!!! TAATTTGTTGACAATGACAA+GGG + chr8_2:15941800-15941819 None:intergenic 25.0%
!!! TTAATTTGTTGACAATGACA+AGG + chr8_2:15941801-15941820 None:intergenic 25.0%
! ATTTAGTAATGAACACAACT+TGG + chr8_2:15941983-15942002 None:intergenic 25.0%
! AGGAATATAGATCAAAGATA+TGG - chr8_2:15942632-15942651 Msa1236760:intron 25.0%
!! TAGCTGCTTTAATAAGAAAA+GGG + chr8_2:15942699-15942718 None:intergenic 25.0%
!! ATAGCTGCTTTAATAAGAAA+AGG + chr8_2:15942700-15942719 None:intergenic 25.0%
! ATCAAAATTGTTGAATTGGT+TGG + chr8_2:15942794-15942813 None:intergenic 25.0%
!! AAACAAGTTGTAATGCTTTT+CGG + chr8_2:15942942-15942961 None:intergenic 25.0%
! TAAACAAAACAGTTGCATTA+TGG + chr8_2:15942987-15943006 None:intergenic 25.0%
! TTCAGAATGATTGTTTACAT+TGG - chr8_2:15943289-15943308 Msa1236760:CDS 25.0%
! ATATCATTCCATGAATCAAT+TGG + chr8_2:15943327-15943346 None:intergenic 25.0%
! TTCATGGAATGATATAGTAA+TGG - chr8_2:15943332-15943351 Msa1236760:CDS 25.0%
! AACGATAATTATTGTAACCA+AGG + chr8_2:15943397-15943416 None:intergenic 25.0%
!!! ATTCAGGATTTTTTGCTATA+TGG - chr8_2:15943421-15943440 Msa1236760:CDS 25.0%
! GGTGAAAAAAAAACATGAAA+TGG + chr8_2:15943597-15943616 None:intergenic 25.0%
!!! GTTGCTTTTATCATAACCAA+TGG - chr8_2:15940029-15940048 Msa1236760:three_prime_UTR 30.0%
CATAATGACTACAAACCAAA+CGG + chr8_2:15940095-15940114 None:intergenic 30.0%
CTGCAAATTTAACACAGAAA+AGG + chr8_2:15940245-15940264 None:intergenic 30.0%
AAGTTTCTTACCATTAAGAG+AGG + chr8_2:15940457-15940476 None:intergenic 30.0%
GTTTATGCTAGTGTTTCAAA+TGG - chr8_2:15940698-15940717 Msa1236760:CDS 30.0%
AAAAATGGAAGACCTGATTT+AGG - chr8_2:15940858-15940877 Msa1236760:CDS 30.0%
AAAATGGAAGACCTGATTTA+GGG - chr8_2:15940859-15940878 Msa1236760:CDS 30.0%
!! TTTGGTAATTCACACTCTTT+TGG + chr8_2:15940906-15940925 None:intergenic 30.0%
AATAAAGCAATGGCCTTTAT+TGG - chr8_2:15940960-15940979 Msa1236760:CDS 30.0%
! ACAGGTATTGTTAACTTTGT+TGG - chr8_2:15941031-15941050 Msa1236760:CDS 30.0%
TAATACGATCCTTGATATTG+TGG - chr8_2:15941160-15941179 Msa1236760:intron 30.0%
CGTATTTATCCACAATATCA+AGG + chr8_2:15941172-15941191 None:intergenic 30.0%
GTTGTGATCTTTGATATTAC+GGG - chr8_2:15941376-15941395 Msa1236760:intron 30.0%
!! GTATGTTTTTAAATTGCGAG+CGG + chr8_2:15941481-15941500 None:intergenic 30.0%
!!! TCAGCATGAAACATCTTTTT+TGG - chr8_2:15941586-15941605 Msa1236760:intron 30.0%
GTTTACATCATAGAATCACA+TGG + chr8_2:15941674-15941693 None:intergenic 30.0%
TCAATGTAGGTAAACCTTTA+TGG + chr8_2:15941888-15941907 None:intergenic 30.0%
AGGTTTACCTACATTGAATA+TGG - chr8_2:15941891-15941910 Msa1236760:intron 30.0%
AAAAGCTTATCATGAACATC+TGG + chr8_2:15941929-15941948 None:intergenic 30.0%
AACATAGTTGTAAAGCAAAG+AGG + chr8_2:15942231-15942250 None:intergenic 30.0%
CAATACATGATGCAACAAAT+AGG + chr8_2:15942519-15942538 None:intergenic 30.0%
TCATGTATTGTCTCAAGAAT+TGG - chr8_2:15942529-15942548 Msa1236760:intron 30.0%
! TCCAATGATTTTACTCTAAC+AGG - chr8_2:15942579-15942598 Msa1236760:intron 30.0%
ACCTGTTAGAGTAAAATCAT+TGG + chr8_2:15942583-15942602 None:intergenic 30.0%
! AATGATTTTACTCTAACAGG+TGG - chr8_2:15942582-15942601 Msa1236760:intron 30.0%
TTGATCTATATTCCTTGTCA+TGG + chr8_2:15942627-15942646 None:intergenic 30.0%
! AGCTGCTTTAATAAGAAAAG+GGG + chr8_2:15942698-15942717 None:intergenic 30.0%
GCTATTTATGAAGACATGAA+TGG - chr8_2:15942715-15942734 Msa1236760:CDS 30.0%
!! AATTATGGTCAAGAGTATCA+AGG + chr8_2:15942768-15942787 None:intergenic 30.0%
TTGATACTCTTGACCATAAT+TGG - chr8_2:15942767-15942786 Msa1236760:CDS 30.0%
TTTGATTATGTTGTGATTGG+TGG - chr8_2:15942808-15942827 Msa1236760:CDS 30.0%
GAAAGAATTTGACTGATCTA+GGG - chr8_2:15942902-15942921 Msa1236760:CDS 30.0%
TCATTCTTATCCTTAGCAAA+TGG + chr8_2:15943264-15943283 None:intergenic 30.0%
ATGTGACAATAATATGTCCT+TGG - chr8_2:15943377-15943396 Msa1236760:CDS 30.0%
TGTGATCCAATACTTCTATT+AGG - chr8_2:15943447-15943466 Msa1236760:CDS 30.0%
AAACATGCAAAAGACAAATG+AGG - chr8_2:15943510-15943529 Msa1236760:five_prime_UTR 30.0%
TATAGGGAAATGGAAACCAT+TGG + chr8_2:15940048-15940067 None:intergenic 35.0%
!!! CAGAAACAAGTTTTGGAGTT+TGG + chr8_2:15940133-15940152 None:intergenic 35.0%
! GTGGAAACAGAAACAAGTTT+TGG + chr8_2:15940140-15940159 None:intergenic 35.0%
! TTCTGTTTCCACCTTTTGTT+TGG - chr8_2:15940148-15940167 Msa1236760:three_prime_UTR 35.0%
ATCTTGAGTGACCAAACAAA+AGG + chr8_2:15940162-15940181 None:intergenic 35.0%
!! TTTTGTTTGGTCACTCAAGA+TGG - chr8_2:15940161-15940180 Msa1236760:three_prime_UTR 35.0%
!! TTGCTTTTCGTCTTCTCTTT+TGG - chr8_2:15940286-15940305 Msa1236760:exon 35.0%
! TGCTTTTCGTCTTCTCTTTT+GGG - chr8_2:15940287-15940306 Msa1236760:exon 35.0%
!! ATATTCTGGTGCTTTAAGAG+GGG + chr8_2:15940403-15940422 None:intergenic 35.0%
!! CATATTCTGGTGCTTTAAGA+GGG + chr8_2:15940404-15940423 None:intergenic 35.0%
! TCATATTCTGGTGCTTTAAG+AGG + chr8_2:15940405-15940424 None:intergenic 35.0%
AGGAAAATGTGACCTATTTG+TGG - chr8_2:15940755-15940774 Msa1236760:CDS 35.0%
GGAAAATGTGACCTATTTGT+GGG - chr8_2:15940756-15940775 Msa1236760:CDS 35.0%
AAATCCAATCTCCCACAAAT+AGG + chr8_2:15940770-15940789 None:intergenic 35.0%
CAACTCTCATTTGTGTACAT+TGG + chr8_2:15940807-15940826 None:intergenic 35.0%
TTTGATGAGGTTCAATCACA+TGG + chr8_2:15940830-15940849 None:intergenic 35.0%
!! CAATAAAGGTACCCTAAATC+AGG + chr8_2:15940873-15940892 None:intergenic 35.0%
! CTGATTTAGGGTACCTTTAT+TGG - chr8_2:15940871-15940890 Msa1236760:CDS 35.0%
! ATTTAGGGTACCTTTATTGG+AGG - chr8_2:15940874-15940893 Msa1236760:CDS 35.0%
TGAGACTAAGAAACCTCTTA+GGG + chr8_2:15940935-15940954 None:intergenic 35.0%
ATGAGACTAAGAAACCTCTT+AGG + chr8_2:15940936-15940955 None:intergenic 35.0%
TCTCATGAGGAATAAAGCAA+TGG - chr8_2:15940950-15940969 Msa1236760:CDS 35.0%
TGAGATGGAATCACCAATAA+AGG + chr8_2:15940976-15940995 None:intergenic 35.0%
AATTGCAGTTGTGATGCATT+TGG - chr8_2:15941207-15941226 Msa1236760:intron 35.0%
TGAAACACAAGTGTCTTCAA+AGG + chr8_2:15941531-15941550 None:intergenic 35.0%
TTCAAATGTAGTAACAGGCA+TGG - chr8_2:15941622-15941641 Msa1236760:intron 35.0%
! TGTTGATTATTGAAGACAGC+TGG - chr8_2:15941824-15941843 Msa1236760:intron 35.0%
! TGGTGCTAATAACTTATGGT+TGG - chr8_2:15941844-15941863 Msa1236760:intron 35.0%
GGTGCTAATAACTTATGGTT+GGG - chr8_2:15941845-15941864 Msa1236760:intron 35.0%
CTAATAACTTATGGTTGGGT+TGG - chr8_2:15941849-15941868 Msa1236760:intron 35.0%
AACCTTTATGGAAAAGACAG+TGG + chr8_2:15941876-15941895 None:intergenic 35.0%
AGTCACTCCATATTCAATGT+AGG + chr8_2:15941901-15941920 None:intergenic 35.0%
CACAACTTGGTAAACATCTA+AGG + chr8_2:15941970-15941989 None:intergenic 35.0%
! CTCATTTCAAGTGCATATTC+TGG - chr8_2:15942005-15942024 Msa1236760:intron 35.0%
! TTTAGAACATATTGTAGGGC+AGG - chr8_2:15942182-15942201 Msa1236760:intron 35.0%
TTAGAACATATTGTAGGGCA+GGG - chr8_2:15942183-15942202 Msa1236760:intron 35.0%
GTTGTAAAGCAAAGAGGAAA+TGG + chr8_2:15942225-15942244 None:intergenic 35.0%
TAGGCAAACCAAGTATTTGT+GGG + chr8_2:15942500-15942519 None:intergenic 35.0%
ATAGGCAAACCAAGTATTTG+TGG + chr8_2:15942501-15942520 None:intergenic 35.0%
ACTTCACACTCTCAGTAATA+TGG - chr8_2:15942671-15942690 Msa1236760:CDS 35.0%
GAATGGAGTTTCATCTTCAA+TGG - chr8_2:15942732-15942751 Msa1236760:CDS 35.0%
! TGAATTGGTTGGTCCAATTA+TGG + chr8_2:15942783-15942802 None:intergenic 35.0%
CATGAAAACAACACAGTATC+TGG - chr8_2:15942862-15942881 Msa1236760:CDS 35.0%
AGATCAGTCAAATTCTTTCC+AGG + chr8_2:15942901-15942920 None:intergenic 35.0%
GGAAAGAATTTGACTGATCT+AGG - chr8_2:15942901-15942920 Msa1236760:CDS 35.0%
! ATCACTTTGAGAATGGTGAA+TGG - chr8_2:15943022-15943041 Msa1236760:intron 35.0%
GATGTAGATTCTATCATGAG+AGG - chr8_2:15943105-15943124 Msa1236760:intron 35.0%
! TGGTGTGAACTTGAAACTTT+TGG - chr8_2:15943176-15943195 Msa1236760:intron 35.0%
TCTTATCCTTAGCAAATGGT+TGG + chr8_2:15943260-15943279 None:intergenic 35.0%
! TGTTTACATTGGTGTTTACC+AGG - chr8_2:15943300-15943319 Msa1236760:CDS 35.0%
! GCTCAACCTAATAGAAGTAT+TGG + chr8_2:15943456-15943475 None:intergenic 35.0%
AAGTACTTGACAACACCGTT+TGG - chr8_2:15940077-15940096 Msa1236760:three_prime_UTR 40.0%
TTGAGTGACCAAACAAAAGG+TGG + chr8_2:15940159-15940178 None:intergenic 40.0%
!! GCAGCATCATTTTTCTTTGC+TGG - chr8_2:15940261-15940280 Msa1236760:three_prime_UTR 40.0%
! TCAGCTTTTGTCTCAGTTTG+AGG + chr8_2:15940363-15940382 None:intergenic 40.0%
CTGAGTCAAACCTCTCTTAA+TGG - chr8_2:15940444-15940463 Msa1236760:CDS 40.0%
TTGGATTCCACCTCCAATAA+AGG + chr8_2:15940887-15940906 None:intergenic 40.0%
TACCAAAGTTCAACCCTAAG+AGG - chr8_2:15940919-15940938 Msa1236760:CDS 40.0%
AACCTCTTAGGGTTGAACTT+TGG + chr8_2:15940924-15940943 None:intergenic 40.0%
AGAGGTTTCTTAGTCTCATG+AGG - chr8_2:15940937-15940956 Msa1236760:CDS 40.0%
CTGTGAGAGAATGCAAAGTA+GGG + chr8_2:15941015-15941034 None:intergenic 40.0%
! ACAAAAGAGTGCACTTGAGT+AGG + chr8_2:15941290-15941309 None:intergenic 40.0%
CTGTAGTTGCAGTTACGATA+TGG - chr8_2:15941418-15941437 Msa1236760:intron 40.0%
TGGTTGTAAAATCTCGACGT+TGG - chr8_2:15941438-15941457 Msa1236760:intron 40.0%
GGTTGTAAAATCTCGACGTT+GGG - chr8_2:15941439-15941458 Msa1236760:intron 40.0%
ACACAAGTGTCTTCAAAGGT+TGG + chr8_2:15941527-15941546 None:intergenic 40.0%
! CAGCTGGTGCTAATAACTTA+TGG - chr8_2:15941840-15941859 Msa1236760:intron 40.0%
! GTCCACTGTCTTTTCCATAA+AGG - chr8_2:15941871-15941890 Msa1236760:intron 40.0%
TCTTTGTCCCCACAAATACT+TGG - chr8_2:15942489-15942508 Msa1236760:intron 40.0%
AGGCAAACCAAGTATTTGTG+GGG + chr8_2:15942499-15942518 None:intergenic 40.0%
! GAGAGTGTGAAGTTATGAGA+GGG + chr8_2:15942664-15942683 None:intergenic 40.0%
! TGAGAGTGTGAAGTTATGAG+AGG + chr8_2:15942665-15942684 None:intergenic 40.0%
GATTATGTTGTGATTGGTGG+TGG - chr8_2:15942811-15942830 Msa1236760:CDS 40.0%
!! TTGTGATTGGTGGTGGAAAA+TGG - chr8_2:15942818-15942837 Msa1236760:CDS 40.0%
! ACACCAGATCACTTTGAGAA+TGG - chr8_2:15943015-15943034 Msa1236760:intron 40.0%
TCACCATTCTCAAAGTGATC+TGG + chr8_2:15943021-15943040 None:intergenic 40.0%
GAGAATGGTGAATGGTTTAG+TGG - chr8_2:15943030-15943049 Msa1236760:intron 40.0%
AATGGTGAATGGTTTAGTGG+AGG - chr8_2:15943033-15943052 Msa1236760:intron 40.0%
ATGGTGAATGGTTTAGTGGA+GGG - chr8_2:15943034-15943053 Msa1236760:intron 40.0%
TCGATTTCACCCTCTTTGAA+GGG + chr8_2:15943078-15943097 None:intergenic 40.0%
! ATCGATTTCACCCTCTTTGA+AGG + chr8_2:15943079-15943098 None:intergenic 40.0%
TGAAGTTCAAGAGTTTGCGA+AGG - chr8_2:15943131-15943150 Msa1236760:intron 40.0%
CTTTCATTGCTTAGACCAGA+TGG - chr8_2:15943210-15943229 Msa1236760:CDS 40.0%
TAGCAAATGGTTGGAATTGC+CGG + chr8_2:15943251-15943270 None:intergenic 40.0%
! GCAATTCCAACCATTTGCTA+AGG - chr8_2:15943251-15943270 Msa1236760:CDS 40.0%
! TACCAGGACCAATTGATTCA+TGG - chr8_2:15943316-15943335 Msa1236760:CDS 40.0%
TTCCATGAATCAATTGGTCC+TGG + chr8_2:15943321-15943340 None:intergenic 40.0%
CATGCAAAAGACAAATGAGG+TGG - chr8_2:15943513-15943532 Msa1236760:five_prime_UTR 40.0%
TTTGTCTCAGTTTGAGGAGG+AGG + chr8_2:15940357-15940376 None:intergenic 45.0%
! GCTTTTGTCTCAGTTTGAGG+AGG + chr8_2:15940360-15940379 None:intergenic 45.0%
AAGAGGGGAAGAGACAACAA+GGG + chr8_2:15940388-15940407 None:intergenic 45.0%
TAAGAGGGGAAGAGACAACA+AGG + chr8_2:15940389-15940408 None:intergenic 45.0%
GTGACCTATTTGTGGGAGAT+TGG - chr8_2:15940763-15940782 Msa1236760:CDS 45.0%
! TAGGGTACCTTTATTGGAGG+TGG - chr8_2:15940877-15940896 Msa1236760:CDS 45.0%
TGCAAAGTAGGGACTGAACA+TGG + chr8_2:15941004-15941023 None:intergenic 45.0%
CCTGTGAGAGAATGCAAAGT+AGG + chr8_2:15941016-15941035 None:intergenic 45.0%
CCTACTTTGCATTCTCTCAC+AGG - chr8_2:15941013-15941032 Msa1236760:CDS 45.0%
!! GTGTCTTCAAAGGTTGGTGA+GGG + chr8_2:15941521-15941540 None:intergenic 45.0%
!! AGTGTCTTCAAAGGTTGGTG+AGG + chr8_2:15941522-15941541 None:intergenic 45.0%
GACCATGCTTCATGATCGAT+GGG + chr8_2:15941724-15941743 None:intergenic 45.0%
TGACCATGCTTCATGATCGA+TGG + chr8_2:15941725-15941744 None:intergenic 45.0%
TGTTGAGGTCTACCATGACA+AGG - chr8_2:15942612-15942631 Msa1236760:intron 45.0%
TCGAACTGTACCCTTCAAAG+AGG - chr8_2:15943065-15943084 Msa1236760:intron 45.0%
CGAACTGTACCCTTCAAAGA+GGG - chr8_2:15943066-15943085 Msa1236760:intron 45.0%
TCGTCACAAGGATCTGAGAA+TGG - chr8_2:15943156-15943175 Msa1236760:intron 45.0%
AATGGTTGGAATTGCCGGTA+AGG + chr8_2:15943246-15943265 None:intergenic 45.0%
GTTGAGCTGCATTGTGTACA+TGG - chr8_2:15943469-15943488 Msa1236760:CDS 45.0%
TCAGTTTGAGGAGGAGGAGA+AGG + chr8_2:15940351-15940370 None:intergenic 50.0%
CTGAACATGGTTGCGTGAGA+TGG + chr8_2:15940991-15941010 None:intergenic 50.0%
AGCCCATCGATCATGAAGCA+TGG - chr8_2:15941719-15941738 Msa1236760:intron 50.0%
TCATGGTAGACCTCAACAGC+TGG + chr8_2:15942610-15942629 None:intergenic 50.0%
TCTGGCTGTCATTACTGTCC+TGG - chr8_2:15942880-15942899 Msa1236760:CDS 50.0%
TTTGCGAAGGCTTCGTCACA+AGG - chr8_2:15943144-15943163 Msa1236760:intron 50.0%
CTTAGACCAGATGGACATCC+AGG - chr8_2:15943219-15943238 Msa1236760:CDS 50.0%
TAAGGTCCTGGATGTCCATC+TGG + chr8_2:15943228-15943247 None:intergenic 50.0%
ATGGACATCCAGGACCTTAC+CGG - chr8_2:15943229-15943248 Msa1236760:CDS 50.0%
ACAGGTGGAACCAGCTGTTG+AGG - chr8_2:15942597-15942616 Msa1236760:intron 55.0%
TGGAATTGCCGGTAAGGTCC+TGG + chr8_2:15943240-15943259 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 15940022 15943651 15940022 ID=Msa1236760;Name=Msa1236760
chr8_2 mRNA 15940022 15943651 15940022 ID=Msa1236760-mRNA-1;Parent=Msa1236760;Name=Msa1236760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=158|1|1|1|0.66|0.5|4|251|447
chr8_2 exon 15940022 15940204 15940022 ID=Msa1236760-mRNA-1:exon:5955;Parent=Msa1236760-mRNA-1
chr8_2 exon 15940231 15941072 15940231 ID=Msa1236760-mRNA-1:exon:5954;Parent=Msa1236760-mRNA-1
chr8_2 exon 15942639 15942922 15942639 ID=Msa1236760-mRNA-1:exon:5953;Parent=Msa1236760-mRNA-1
chr8_2 exon 15943208 15943651 15943208 ID=Msa1236760-mRNA-1:exon:5952;Parent=Msa1236760-mRNA-1
chr8_2 five_prime_UTR 15943494 15943651 15943494 ID=Msa1236760-mRNA-1:five_prime_utr;Parent=Msa1236760-mRNA-1
chr8_2 CDS 15943208 15943493 15943208 ID=Msa1236760-mRNA-1:cds;Parent=Msa1236760-mRNA-1
chr8_2 CDS 15942639 15942922 15942639 ID=Msa1236760-mRNA-1:cds;Parent=Msa1236760-mRNA-1
chr8_2 CDS 15940299 15941072 15940299 ID=Msa1236760-mRNA-1:cds;Parent=Msa1236760-mRNA-1
chr8_2 three_prime_UTR 15940231 15940298 15940231 ID=Msa1236760-mRNA-1:three_prime_utr;Parent=Msa1236760-mRNA-1
chr8_2 three_prime_UTR 15940022 15940204 15940022 ID=Msa1236760-mRNA-1:three_prime_utr;Parent=Msa1236760-mRNA-1
Gene Sequence

>Msa1236760

ATGGTGAAGAGAGTACTAAGTTCTGAAAATATGGGCTCATTGTTTTCACTGCAAAATCACAGCCTTTTCTGTGTTAAATTTGCAGCATCATTTTTCTTTGCTGGTCTTGCTTTTCGTCTTCTCTTTTGGGATTCATTCAGTTTGTCATCATTTGTAGTGATACAGATACCTTCTCCTCCTCCTCAAACTGAGACAAAAGCTGAGTCCCTTGTTGTCTCTTCCCCTCTTAAAGCACCAGAATATGATGAATTTCAAGTAAACAATCTGAGTCAAACCTCTCTTAATGGTACAGGAAAATGTGACCTATTTGTGGGAGATTGGATTTCTGATCAATCTGAACCAATGTACACAAATGAGAGTTGCCATGTGATTGAACCTCATCAAAATTGTATGAAAAATGGAAGACCTGATTTAGGGTACCTTTATTGGAGGTGGAATCCAAAAGAGTGTGAATTACCAAAGTTCAACCCTAAGAGGTTTCTTAGTCTCATGAGGAATAAAGCAATGGCCTTTATTGGTGATTCCATCTCACGCAACCATGTTCAGTCCCTACTTTGCATTCTCTCACAGGTGGAACCAGCTGTTGAGGTCTACCATGACAAGGAATATAGATCAAAGATATGGAAATTTCCCTCTCATAACTTCACACTCTCAGTAATATGGACCCCTTTTCTTATTAAAGCAGCTATTTATGAAGACATGAATGGAGTTTCATCTTCAATGGTTCAACTTCACCTTGATACTCTTGACCATAATTGGACCAACCAATTCAACAATTTTGATTATGTTGTGATTGGTGGTGGAAAATGGTTTCTCAAATCTGCAATATTTCATGAAAACAACACAGTATCTGGCTGTCATTACTGTCCTGGAAAGAATTTGACTGATCTAGGGTTCGACTACGCGTACCGAAAAGCATTACAACTTGTTTTCAACTTCTTCACAAAGTCTAGCCATAATGCAACTGTTTTGTTTAGAACTACAACACCAGATCACTTTGAGAATGGTGAATGGTTTAGTGGAGGGTATTGTAATCGAACTGTACCCTTCAAAGAGGGTGAAATCGATATGATAGATGTAGATTCTATCATGAGAGGTATTGAAGTTCAAGAGTTTGCGAAGGCTTCGTCACAAGGATCTGAGAATGGTGTGAACTTGAAACTTTTGGATACAACTTTTCTTTCATTGCTTAGACCAGATGGACATCCAGGACCTTACCGGCAATTCCAACCATTTGCTAAGGATAAGAATGATAAAGTTCAGAATGATTGTTTACATTGGTGTTTACCAGGACCAATTGATTCATGGAATGATATAGTAATGGAAATGCTAGTTAATGCTTAG
Protein sequence

>Msa1236760

MVKRVLSSENMGSLFSLQNHSLFCVKFAASFFFAGLAFRLLFWDSFSLSSFVVIQIPSPPPQTETKAESLVVSSPLKAPEYDEFQVNNLSQTSLNGTGKCDLFVGDWISDQSEPMYTNESCHVIEPHQNCMKNGRPDLGYLYWRWNPKECELPKFNPKRFLSLMRNKAMAFIGDSISRNHVQSLLCILSQVEPAVEVYHDKEYRSKIWKFPSHNFTLSVIWTPFLIKAAIYEDMNGVSSSMVQLHLDTLDHNWTNQFNNFDYVVIGGGKWFLKSAIFHENNTVSGCHYCPGKNLTDLGFDYAYRKALQLVFNFFTKSSHNATVLFRTTTPDHFENGEWFSGGYCNRTVPFKEGEIDMIDVDSIMRGIEVQEFAKASSQGSENGVNLKLLDTTFLSLLRPDGHPGPYRQFQPFAKDKNDKVQNDCLHWCLPGPIDSWNDIVMEMLVNA*