Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177680 | XP_013444776.1 | 97.917 | 480 | 10 | 0 | 1 | 480 | 1 | 480 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177680 | sp|Q9MB95|1A11_PRUMU | 70.539 | 482 | 127 | 3 | 10 | 479 | 12 | 490 | 0.0 | 700 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177680 | A0A072TNM7 | 97.917 | 480 | 10 | 0 | 1 | 480 | 1 | 480 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1177680 | Msa1278500 | 0.822381 | 2.442316e-53 | -8.615850e-47 |
| Msa1177680 | Msa1317770 | 0.826843 | 2.171686e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177680 | MtrunA17_Chr8g0348351 | 97.917 | 480 | 10 | 0 | 1 | 480 | 1 | 480 | 0.0 | 984 |
| Msa1177680 | MtrunA17_Chr7g0248681 | 79.752 | 484 | 94 | 3 | 1 | 480 | 1 | 484 | 0.0 | 783 |
| Msa1177680 | MtrunA17_Chr8g0387481 | 65.417 | 480 | 155 | 3 | 9 | 480 | 10 | 486 | 0.0 | 675 |
| Msa1177680 | MtrunA17_Chr6g0488041 | 56.019 | 432 | 188 | 2 | 11 | 441 | 14 | 444 | 0.0 | 525 |
| Msa1177680 | MtrunA17_Chr4g0054371 | 53.089 | 437 | 195 | 2 | 9 | 435 | 2 | 438 | 0.0 | 516 |
| Msa1177680 | MtrunA17_Chr8g0389311 | 54.779 | 429 | 186 | 2 | 11 | 438 | 12 | 433 | 9.25e-180 | 510 |
| Msa1177680 | MtrunA17_Chr8g0389321 | 54.779 | 429 | 186 | 2 | 11 | 438 | 12 | 433 | 9.25e-180 | 510 |
| Msa1177680 | MtrunA17_Chr5g0400831 | 53.118 | 433 | 194 | 3 | 9 | 432 | 2 | 434 | 6.42e-177 | 505 |
| Msa1177680 | MtrunA17_Chr3g0135251 | 53.630 | 427 | 193 | 2 | 10 | 431 | 1 | 427 | 2.30e-176 | 503 |
| Msa1177680 | MtrunA17_Chr6g0475681 | 41.943 | 422 | 244 | 1 | 11 | 431 | 104 | 525 | 1.69e-130 | 388 |
| Msa1177680 | MtrunA17_Chr5g0398431 | 39.506 | 405 | 245 | 0 | 23 | 427 | 84 | 488 | 1.45e-115 | 349 |
| Msa1177680 | MtrunA17_Chr2g0324801 | 22.380 | 353 | 242 | 11 | 89 | 430 | 46 | 377 | 4.27e-14 | 73.9 |
| Msa1177680 | MtrunA17_Chr5g0412871 | 24.294 | 177 | 129 | 4 | 86 | 260 | 100 | 273 | 2.47e-13 | 72.0 |
| Msa1177680 | MtrunA17_Chr8g0345201 | 23.284 | 335 | 232 | 11 | 119 | 430 | 182 | 514 | 5.01e-12 | 68.2 |
| Msa1177680 | MtrunA17_Chr8g0360241 | 21.687 | 415 | 271 | 18 | 43 | 438 | 38 | 417 | 1.20e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177680 | AT3G61510.1 | 64.185 | 497 | 151 | 5 | 1 | 479 | 1 | 488 | 0.0 | 662 |
| Msa1177680 | AT1G01480.1 | 63.105 | 496 | 159 | 5 | 4 | 479 | 5 | 496 | 0.0 | 642 |
| Msa1177680 | AT4G11280.1 | 62.527 | 467 | 162 | 4 | 6 | 459 | 10 | 476 | 0.0 | 609 |
| Msa1177680 | AT4G37770.1 | 57.277 | 426 | 178 | 1 | 10 | 431 | 3 | 428 | 0.0 | 527 |
| Msa1177680 | AT4G08040.1 | 53.761 | 452 | 197 | 3 | 10 | 449 | 1 | 452 | 0.0 | 523 |
| Msa1177680 | AT4G26200.1 | 56.876 | 429 | 182 | 2 | 11 | 436 | 18 | 446 | 0.0 | 518 |
| Msa1177680 | AT2G22810.1 | 54.503 | 433 | 192 | 2 | 11 | 438 | 4 | 436 | 9.33e-176 | 502 |
| Msa1177680 | AT3G49700.1 | 53.563 | 435 | 194 | 2 | 11 | 439 | 4 | 436 | 3.46e-174 | 498 |
| Msa1177680 | AT5G65800.1 | 53.864 | 427 | 192 | 2 | 9 | 431 | 3 | 428 | 1.51e-173 | 496 |
| Msa1177680 | AT1G01480.2 | 61.929 | 394 | 126 | 5 | 106 | 479 | 1 | 390 | 5.76e-171 | 486 |
| Msa1177680 | AT5G51690.1 | 41.278 | 407 | 238 | 1 | 23 | 428 | 81 | 487 | 1.39e-122 | 367 |
| Msa1177680 | AT1G62960.1 | 39.467 | 413 | 241 | 6 | 19 | 428 | 141 | 547 | 8.87e-108 | 331 |
| Msa1177680 | AT5G51690.2 | 41.643 | 353 | 206 | 0 | 76 | 428 | 12 | 364 | 1.79e-107 | 324 |
| Msa1177680 | AT1G23310.2 | 27.119 | 177 | 124 | 4 | 86 | 260 | 100 | 273 | 6.09e-16 | 80.5 |
| Msa1177680 | AT1G72330.1 | 24.036 | 337 | 231 | 10 | 117 | 430 | 196 | 530 | 6.37e-16 | 80.9 |
| Msa1177680 | AT1G23310.1 | 27.119 | 177 | 124 | 4 | 86 | 260 | 100 | 273 | 8.01e-16 | 80.1 |
| Msa1177680 | AT1G17290.1 | 23.720 | 371 | 254 | 12 | 84 | 430 | 168 | 533 | 6.68e-15 | 77.4 |
| Msa1177680 | AT4G23600.1 | 23.861 | 373 | 236 | 13 | 89 | 442 | 73 | 416 | 1.79e-14 | 75.9 |
| Msa1177680 | AT1G70580.4 | 25.424 | 177 | 127 | 4 | 86 | 260 | 100 | 273 | 4.19e-14 | 74.7 |
| Msa1177680 | AT1G70580.2 | 25.424 | 177 | 127 | 4 | 86 | 260 | 100 | 273 | 4.19e-14 | 74.7 |
| Msa1177680 | AT1G70580.3 | 25.424 | 177 | 127 | 4 | 86 | 260 | 100 | 273 | 4.19e-14 | 74.7 |
| Msa1177680 | AT1G70580.1 | 25.424 | 177 | 127 | 4 | 86 | 260 | 100 | 273 | 4.19e-14 | 74.7 |
| Msa1177680 | AT1G72330.2 | 26.667 | 210 | 146 | 6 | 117 | 319 | 196 | 404 | 5.57e-14 | 74.3 |
| Msa1177680 | AT1G72330.3 | 22.857 | 350 | 232 | 10 | 117 | 430 | 196 | 543 | 8.86e-14 | 73.9 |
| Msa1177680 | AT4G23600.2 | 24.189 | 339 | 211 | 12 | 123 | 442 | 1 | 312 | 1.14e-12 | 69.3 |
| Msa1177680 | AT5G36160.1 | 22.680 | 388 | 243 | 17 | 73 | 438 | 67 | 419 | 1.44e-12 | 69.7 |
| Msa1177680 | AT4G28420.2 | 20.492 | 366 | 249 | 10 | 88 | 437 | 97 | 436 | 1.87e-12 | 69.7 |
| Msa1177680 | AT1G77670.1 | 23.677 | 359 | 238 | 15 | 88 | 439 | 111 | 440 | 2.25e-12 | 69.3 |
| Msa1177680 | AT5G53970.1 | 21.196 | 368 | 246 | 13 | 88 | 438 | 70 | 410 | 5.57e-12 | 67.8 |
| Msa1177680 | AT4G23590.1 | 23.691 | 363 | 235 | 11 | 89 | 435 | 73 | 409 | 4.23e-11 | 65.1 |
| Msa1177680 | AT2G24850.1 | 20.760 | 342 | 224 | 13 | 121 | 442 | 117 | 431 | 5.87e-11 | 64.7 |
Find 111 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGAGGTTGGTTGGTTTA+GGG | 0.190705 | 8_1:+10075004 | Msa1177680:CDS |
| GTTCGAGAAGGTTGTTAAAA+AGG | 0.241887 | 8_1:+10074793 | Msa1177680:CDS |
| AAATATATTAAACATGAGTT+TGG | 0.250019 | 8_1:+10071709 | Msa1177680:exon |
| AAATTTCATCACAAACTAAA+TGG | 0.250356 | 8_1:-10074494 | None:intergenic |
| GCTCTGAGGTTGGTTGGTTT+AGG | 0.251907 | 8_1:+10075003 | Msa1177680:CDS |
| GTGAAGCTAAGACTTAAATT+TGG | 0.263791 | 8_1:-10075134 | None:intergenic |
| CTTTAGTGTCTCTTTGTCTA+AGG | 0.264938 | 8_1:-10074439 | None:intergenic |
| TTGTCTAAGGTTGTACCTAA+TGG | 0.267027 | 8_1:-10074426 | None:intergenic |
| TCTTGTTATCTTGAAGTTGT+TGG | 0.286651 | 8_1:-10074322 | None:intergenic |
| GGAAGGAAAATGTCAAGTTT+TGG | 0.292687 | 8_1:+10074690 | Msa1177680:CDS |
| TTGGTCATTGGTTGCTATCT+TGG | 0.313466 | 8_1:-10071756 | None:intergenic |
| AATATATTAAACATGAGTTT+GGG | 0.316746 | 8_1:+10071710 | Msa1177680:exon |
| TTGATGAGTGGAGGGGCAAC+AGG | 0.323585 | 8_1:+10072537 | Msa1177680:CDS |
| CTGAACTTACACACTCCTTC+TGG | 0.332505 | 8_1:-10072270 | None:intergenic |
| TAAGGTATAAAATATAATTA+AGG | 0.345734 | 8_1:-10071681 | None:intergenic |
| TGTCTAAGGTTGTACCTAAT+GGG | 0.346338 | 8_1:-10074425 | None:intergenic |
| GCTTTCCAGCCATCAAAATA+TGG | 0.348925 | 8_1:-10071794 | None:intergenic |
| CCCCTCCACTCATCAATATA+CGG | 0.351993 | 8_1:-10072530 | None:intergenic |
| GAAGACAACATCAATGTAAA+GGG | 0.357922 | 8_1:+10074378 | Msa1177680:CDS |
| TCAAAAGACTTAGGGTTTCC+TGG | 0.365260 | 8_1:+10074618 | Msa1177680:CDS |
| TATAGTTTATCAAAAGACTT+AGG | 0.366855 | 8_1:+10074609 | Msa1177680:CDS |
| GTTCCTACCCCTTTCTATCC+AGG | 0.392300 | 8_1:+10072612 | Msa1177680:CDS |
| CAGAAGGAGTGTGTAAGTTC+AGG | 0.392726 | 8_1:+10072271 | Msa1177680:CDS |
| TAAGTCTTAGCTTCACTTCA+AGG | 0.396222 | 8_1:+10075141 | Msa1177680:CDS |
| TGGAGTGCAAATTGAAGCCT+TGG | 0.407080 | 8_1:-10072250 | None:intergenic |
| TTGAAGAAGAGTTGAAGCTT+TGG | 0.411415 | 8_1:+10074925 | Msa1177680:CDS |
| TTAATTGCTCTGAGGTTGGT+TGG | 0.417602 | 8_1:+10074997 | Msa1177680:CDS |
| GATGGGTCTTGCTGAAAATC+AGG | 0.425500 | 8_1:+10071868 | Msa1177680:CDS |
| CAAAGGATAAGAGCATTTGT+AGG | 0.434695 | 8_1:+10075071 | Msa1177680:CDS |
| CCACTCATCAATATACGGTT+TGG | 0.435145 | 8_1:-10072525 | None:intergenic |
| GCTAACTATCAAGACTATCA+TGG | 0.442250 | 8_1:+10072300 | Msa1177680:CDS |
| ACAAACCCCTCCAACCCATT+AGG | 0.442463 | 8_1:+10074411 | Msa1177680:CDS |
| AGCTAATTTGTGTGTGAAGT+AGG | 0.449116 | 8_1:+10075442 | Msa1177680:three_prime_UTR |
| GCTTTGATCTGATTGAAGAA+TGG | 0.457254 | 8_1:+10072214 | Msa1177680:CDS |
| CATGCATACCCTGGATAGAA+AGG | 0.467439 | 8_1:-10072621 | None:intergenic |
| TTTAGCTAGCTAGAACACTA+TGG | 0.467697 | 8_1:-10075382 | None:intergenic |
| ATAGTTTATCAAAAGACTTA+GGG | 0.480641 | 8_1:+10074610 | Msa1177680:CDS |
| TGCTAATATTGATGATGAAA+CGG | 0.483936 | 8_1:+10075034 | Msa1177680:CDS |
| AGAAGACAACATCAATGTAA+AGG | 0.484559 | 8_1:+10074377 | Msa1177680:CDS |
| TTCCTACCCCTTTCTATCCA+GGG | 0.485138 | 8_1:+10072613 | Msa1177680:CDS |
| TCACAAATAGCTAGCTAGCT+AGG | 0.487848 | 8_1:-10075329 | None:intergenic |
| TGACTTGTGTTGGAGAACTA+AGG | 0.488847 | 8_1:+10074269 | Msa1177680:CDS |
| TTGGCATGGTATTATTAATG+AGG | 0.490353 | 8_1:+10074944 | Msa1177680:CDS |
| GGAACTAGAAAAGCATCTCC+TGG | 0.491345 | 8_1:-10072594 | None:intergenic |
| AGAAGGAGTGTGTAAGTTCA+GGG | 0.496417 | 8_1:+10072272 | Msa1177680:CDS |
| TGTCAAAAGTGAGAGGTGGT+AGG | 0.500843 | 8_1:+10072490 | Msa1177680:CDS |
| TCCTCAGGGTGTAATTCAGA+TGG | 0.501420 | 8_1:+10071850 | Msa1177680:CDS |
| GGAGTGCAAATTGAAGCCTT+GGG | 0.507315 | 8_1:-10072249 | None:intergenic |
| GCTAATTTGTGTGTGAAGTA+GGG | 0.521772 | 8_1:+10075443 | Msa1177680:three_prime_UTR |
| GTCAAAAGTGAGAGGTGGTA+GGG | 0.523966 | 8_1:+10072491 | Msa1177680:CDS |
| TTTGATAAAATGATGTGAGA+GGG | 0.524195 | 8_1:+10075293 | Msa1177680:three_prime_UTR |
| AAGTAAATTAGAATGTCCTA+TGG | 0.530201 | 8_1:+10075247 | Msa1177680:three_prime_UTR |
| GTTGTACCTAATGGGTTGGA+GGG | 0.531299 | 8_1:-10074417 | None:intergenic |
| AGTCGATTTCCAAGTAATGC+GGG | 0.535799 | 8_1:+10074855 | Msa1177680:CDS |
| TCACTAACACTTACATAGCT+AGG | 0.541325 | 8_1:-10074540 | None:intergenic |
| ATGCATACCCTGGATAGAAA+GGG | 0.541474 | 8_1:-10072620 | None:intergenic |
| AGGCATGACAAATTTACAAA+GGG | 0.543731 | 8_1:+10074813 | Msa1177680:CDS |
| AAAGGATAAGAGCATTTGTA+GGG | 0.544949 | 8_1:+10075072 | Msa1177680:CDS |
| CTAACTATCAAGACTATCAT+GGG | 0.547476 | 8_1:+10072301 | Msa1177680:CDS |
| GATTCGTCCGTGACTTGTGT+TGG | 0.550678 | 8_1:+10074259 | Msa1177680:intron |
| GGTTGTACCTAATGGGTTGG+AGG | 0.552038 | 8_1:-10074418 | None:intergenic |
| ACCGTATATTGATGAGTGGA+GGG | 0.557627 | 8_1:+10072529 | Msa1177680:CDS |
| GGTGAAGCTTAATGTGTCAC+CGG | 0.558827 | 8_1:+10074965 | Msa1177680:CDS |
| GTGCTTACACTTGTAAACTC+TGG | 0.560597 | 8_1:-10072327 | None:intergenic |
| GTGAAGCTTAATGTGTCACC+GGG | 0.563590 | 8_1:+10074966 | Msa1177680:CDS |
| TAAGGTTGTACCTAATGGGT+TGG | 0.564708 | 8_1:-10074421 | None:intergenic |
| GCTTCAATTTGCACTCCAGA+AGG | 0.564795 | 8_1:+10072255 | Msa1177680:CDS |
| CTAAAGTGATCTTTGTGTGT+AGG | 0.566928 | 8_1:+10075400 | Msa1177680:three_prime_UTR |
| TGATGAGTGGAGGGGCAACA+GGG | 0.568770 | 8_1:+10072538 | Msa1177680:CDS |
| TAATTTACTTCATATTCATG+TGG | 0.571162 | 8_1:-10075234 | None:intergenic |
| AACCGTATATTGATGAGTGG+AGG | 0.572345 | 8_1:+10072528 | Msa1177680:CDS |
| CGGTGGAAATTGCATTGCAA+AGG | 0.577450 | 8_1:+10075054 | Msa1177680:CDS |
| AAATGATGTGAATGAGATCA+AGG | 0.578893 | 8_1:-10074587 | None:intergenic |
| ATTCATGTGGCTCGAACAAG+TGG | 0.579438 | 8_1:-10075221 | None:intergenic |
| AGAAAGAAAGAAAATTCCAT+AGG | 0.581526 | 8_1:-10075263 | None:intergenic |
| TTGGAGCTATCACAATGGAC+AGG | 0.589745 | 8_1:-10074303 | None:intergenic |
| AATGATCAAGTGGTGAATTG+TGG | 0.596988 | 8_1:+10074669 | Msa1177680:CDS |
| TAGCAACCAATGACCAACAT+GGG | 0.597545 | 8_1:+10071762 | Msa1177680:CDS |
| TGATGAAATTTATGCAGCCA+CGG | 0.598741 | 8_1:+10074506 | Msa1177680:CDS |
| AAGGCATGACAAATTTACAA+AGG | 0.599045 | 8_1:+10074812 | Msa1177680:CDS |
| ATTTACAAAGGGACTCGAAG+AGG | 0.604697 | 8_1:+10074824 | Msa1177680:CDS |
| TAGTCGATTTCCAAGTAATG+CGG | 0.607200 | 8_1:+10074854 | Msa1177680:CDS |
| TTATTCATACAATGATCAAG+TGG | 0.611105 | 8_1:+10074659 | Msa1177680:CDS |
| TAGTTCTCCAACACAAGTCA+CGG | 0.615746 | 8_1:-10074266 | None:intergenic |
| CCTCAGGGTGTAATTCAGAT+GGG | 0.625600 | 8_1:+10071851 | Msa1177680:CDS |
| GATGAGTGGAGGGGCAACAG+GGG | 0.627412 | 8_1:+10072539 | Msa1177680:CDS |
| ATATATTAAACATGAGTTTG+GGG | 0.627515 | 8_1:+10071711 | Msa1177680:exon |
| ATCAAGTGGTGAATTGTGGA+AGG | 0.630178 | 8_1:+10074673 | Msa1177680:CDS |
| ATGGATAAAGAATAATCCCA+AGG | 0.631217 | 8_1:+10072233 | Msa1177680:CDS |
| GCTCGAACAAGTGGTGAATG+AGG | 0.631372 | 8_1:-10075212 | None:intergenic |
| GAAGAGTTGAAGCTTTGGCA+TGG | 0.634226 | 8_1:+10074930 | Msa1177680:CDS |
| CCAAACCGTATATTGATGAG+TGG | 0.635490 | 8_1:+10072525 | Msa1177680:CDS |
| TTGTACCTAATGGGTTGGAG+GGG | 0.640699 | 8_1:-10074416 | None:intergenic |
| AGAAAGTTGAAGTCAAACGT+TGG | 0.643437 | 8_1:+10075108 | Msa1177680:CDS |
| TACCCTGGATAGAAAGGGGT+AGG | 0.644778 | 8_1:-10072615 | None:intergenic |
| ACTATCCCAACCCTAAAACC+AGG | 0.645230 | 8_1:-10074636 | None:intergenic |
| TTTATGTCAAAAGTGAGAGG+TGG | 0.645613 | 8_1:+10072486 | Msa1177680:CDS |
| AACACTTACATAGCTAGGTG+AGG | 0.649516 | 8_1:-10074535 | None:intergenic |
| GATATGATTATGTGATTGTG+AGG | 0.657848 | 8_1:-10075188 | None:intergenic |
| AAATTTATGTCAAAAGTGAG+AGG | 0.659568 | 8_1:+10072483 | Msa1177680:CDS |
| TGCATACCCTGGATAGAAAG+GGG | 0.660965 | 8_1:-10072619 | None:intergenic |
| AAGACAACATCAATGTAAAG+GGG | 0.661068 | 8_1:+10074379 | Msa1177680:CDS |
| GTCTTAGCTTCACTTCAAGG+AGG | 0.672185 | 8_1:+10075144 | Msa1177680:CDS |
| ATAGCAACCAATGACCAACA+TGG | 0.676462 | 8_1:+10071761 | Msa1177680:CDS |
| CCGTATATTGATGAGTGGAG+GGG | 0.687406 | 8_1:+10072530 | Msa1177680:CDS |
| CCCATCTGAATTACACCCTG+AGG | 0.694079 | 8_1:-10071851 | None:intergenic |
| AGCAACCAATGACCAACATG+GGG | 0.697343 | 8_1:+10071763 | Msa1177680:CDS |
| GAGCAATTAAAAGAAGACCC+CGG | 0.703258 | 8_1:-10074984 | None:intergenic |
| AGTTGTTGGAGCTATCACAA+TGG | 0.715860 | 8_1:-10074308 | None:intergenic |
| TAATATTGATGATGAAACGG+TGG | 0.738048 | 8_1:+10075037 | Msa1177680:CDS |
| TGAAGCTTAATGTGTCACCG+GGG | 0.797341 | 8_1:+10074967 | Msa1177680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGGTATAAAATATAATTA+AGG | - | chr8_1:10071684-10071703 | None:intergenic | 10.0% |
| !!! | GTTTAATATATTTTTCTTTA+AGG | - | chr8_1:10071702-10071721 | None:intergenic | 10.0% |
| !! | ATAATAAATTATGAAAGAAA+AGG | - | chr8_1:10072649-10072668 | None:intergenic | 10.0% |
| !! | AAATATATTAAACATGAGTT+TGG | + | chr8_1:10071709-10071728 | Msa1177680:exon | 15.0% |
| !! | AATATATTAAACATGAGTTT+GGG | + | chr8_1:10071710-10071729 | Msa1177680:exon | 15.0% |
| !! | TTAAAAATAAACTACAAATG+AGG | - | chr8_1:10072031-10072050 | None:intergenic | 15.0% |
| !! | TAATGAACTAATATAATGAT+TGG | + | chr8_1:10072389-10072408 | Msa1177680:intron | 15.0% |
| !! | AATGAACTAATATAATGATT+GGG | + | chr8_1:10072390-10072409 | Msa1177680:intron | 15.0% |
| !!! | TTTATTATATATTGTTTCTC+AGG | + | chr8_1:10072452-10072471 | Msa1177680:intron | 15.0% |
| !! | TTATATTCTTTGTATAAAGT+TGG | - | chr8_1:10073130-10073149 | None:intergenic | 15.0% |
| !!! | ATCAAATGAATAATTTTGAT+TGG | - | chr8_1:10073223-10073242 | None:intergenic | 15.0% |
| !!! | TGATTTTGTTTTTCAAATTA+CGG | - | chr8_1:10073442-10073461 | None:intergenic | 15.0% |
| !! | ATTTGAAAAACAAAATCATA+AGG | + | chr8_1:10073444-10073463 | Msa1177680:intron | 15.0% |
| !! | TTAAAAAAAATCATAAGATG+AGG | - | chr8_1:10074080-10074099 | None:intergenic | 15.0% |
| !! | ATATATTAAACATGAGTTTG+GGG | + | chr8_1:10071711-10071730 | Msa1177680:exon | 20.0% |
| !!! | ACTCATTTGTAGTTTTTTTT+TGG | + | chr8_1:10071996-10072015 | Msa1177680:intron | 20.0% |
| !! | AATAACTAGTTACATCATAT+TGG | + | chr8_1:10072141-10072160 | Msa1177680:intron | 20.0% |
| !!! | ATGTTCATTTTAAATGCTAT+TGG | - | chr8_1:10073055-10073074 | None:intergenic | 20.0% |
| !! | AAGAAAGGAATATATCATAA+AGG | + | chr8_1:10073545-10073564 | Msa1177680:intron | 20.0% |
| !! | TCTGTAGTAAAATATGAATT+AGG | - | chr8_1:10074241-10074260 | None:intergenic | 20.0% |
| !! | AAATTTCATCACAAACTAAA+TGG | - | chr8_1:10074497-10074516 | None:intergenic | 20.0% |
| !! | TATAGTTTATCAAAAGACTT+AGG | + | chr8_1:10074609-10074628 | Msa1177680:CDS | 20.0% |
| !! | ATAGTTTATCAAAAGACTTA+GGG | + | chr8_1:10074610-10074629 | Msa1177680:CDS | 20.0% |
| !! | TAATTTACTTCATATTCATG+TGG | - | chr8_1:10075237-10075256 | None:intergenic | 20.0% |
| !!! | GAAAATTCTCCATATTTTGA+TGG | + | chr8_1:10071785-10071804 | Msa1177680:CDS | 25.0% |
| ! | CTGAAAATCAGGTATATATA+TGG | + | chr8_1:10071879-10071898 | Msa1177680:intron | 25.0% |
| !!! | AGTTCATTAACCTTTTAAGT+TGG | - | chr8_1:10072378-10072397 | None:intergenic | 25.0% |
| !! | GGGCATATATTTTTCTATAT+TGG | + | chr8_1:10072410-10072429 | Msa1177680:intron | 25.0% |
| ! | AAATTTATGTCAAAAGTGAG+AGG | + | chr8_1:10072483-10072502 | Msa1177680:CDS | 25.0% |
| !! | TGAATTAATCATGTTTTGCT+TGG | + | chr8_1:10072566-10072585 | Msa1177680:CDS | 25.0% |
| ! | ATAACTATTCCATCAACAAA+AGG | + | chr8_1:10073146-10073165 | Msa1177680:intron | 25.0% |
| ! | AAATATGTCACACAAATGAA+AGG | - | chr8_1:10073885-10073904 | None:intergenic | 25.0% |
| !!! | CATTTGTGTGACATATTTTT+TGG | + | chr8_1:10073887-10073906 | Msa1177680:intron | 25.0% |
| ! | TTATTCATACAATGATCAAG+TGG | + | chr8_1:10074659-10074678 | Msa1177680:CDS | 25.0% |
| ! | GAACTTGAAAAAATTGCTTA+AGG | + | chr8_1:10074893-10074912 | Msa1177680:CDS | 25.0% |
| !!! | TGCTAATATTGATGATGAAA+CGG | + | chr8_1:10075034-10075053 | Msa1177680:CDS | 25.0% |
| ! | AAGTAAATTAGAATGTCCTA+TGG | + | chr8_1:10075247-10075266 | Msa1177680:three_prime_UTR | 25.0% |
| ! | AGAAAGAAAGAAAATTCCAT+AGG | - | chr8_1:10075266-10075285 | None:intergenic | 25.0% |
| !! | TTTTGATAAAATGATGTGAG+AGG | + | chr8_1:10075292-10075311 | Msa1177680:three_prime_UTR | 25.0% |
| ! | TTTGATAAAATGATGTGAGA+GGG | + | chr8_1:10075293-10075312 | Msa1177680:three_prime_UTR | 25.0% |
| !!! | GATTTTTTTTAGGGTGGAAT+GGG | - | chr8_1:10071832-10071851 | None:intergenic | 30.0% |
| AAAAAAACTGCATGTCATTG+TGG | - | chr8_1:10071937-10071956 | None:intergenic | 30.0% | |
| ATGGATAAAGAATAATCCCA+AGG | + | chr8_1:10072233-10072252 | Msa1177680:CDS | 30.0% | |
| CTAACTATCAAGACTATCAT+GGG | + | chr8_1:10072301-10072320 | Msa1177680:CDS | 30.0% | |
| TTTGACAAAGCCAACTTAAA+AGG | + | chr8_1:10072365-10072384 | Msa1177680:intron | 30.0% | |
| ! | ATATATTGTTTCTCAGGCTA+TGG | + | chr8_1:10072458-10072477 | Msa1177680:intron | 30.0% |
| GCATGCATATACAATGAATA+AGG | - | chr8_1:10072674-10072693 | None:intergenic | 30.0% | |
| CTCAAAAATGAGGAATCATA+GGG | - | chr8_1:10073002-10073021 | None:intergenic | 30.0% | |
| ACTCAAAAATGAGGAATCAT+AGG | - | chr8_1:10073003-10073022 | None:intergenic | 30.0% | |
| TGCAATTACCACATAAATGT+GGG | - | chr8_1:10073027-10073046 | None:intergenic | 30.0% | |
| ACATTTATGTGGTAATTGCA+CGG | + | chr8_1:10073027-10073046 | Msa1177680:intron | 30.0% | |
| TTCTACTCATCTATTGTTGA+TGG | + | chr8_1:10073293-10073312 | Msa1177680:intron | 30.0% | |
| TCTACTCATCTATTGTTGAT+GGG | + | chr8_1:10073294-10073313 | Msa1177680:intron | 30.0% | |
| !! | GTTTTTCAAATTACGGTCAA+TGG | - | chr8_1:10073435-10073454 | None:intergenic | 30.0% |
| CAAAATCATAAGGACAATAG+AGG | + | chr8_1:10073454-10073473 | Msa1177680:intron | 30.0% | |
| CTGAGATAGAAATATATCGA+GGG | + | chr8_1:10073482-10073501 | Msa1177680:intron | 30.0% | |
| CTATTGATGTATCGTAAGAA+AGG | + | chr8_1:10073530-10073549 | Msa1177680:intron | 30.0% | |
| AACCATAAACATCTTTGTGT+AGG | + | chr8_1:10073605-10073624 | Msa1177680:intron | 30.0% | |
| ACCATAAACATCTTTGTGTA+GGG | + | chr8_1:10073606-10073625 | Msa1177680:intron | 30.0% | |
| ! | CTCATTTTCTCGTTTATACA+AGG | - | chr8_1:10073635-10073654 | None:intergenic | 30.0% |
| GAAAATGAGCAAGAAAAGTA+AGG | + | chr8_1:10073646-10073665 | Msa1177680:intron | 30.0% | |
| CTCAACCACTTATTTATGAT+CGG | - | chr8_1:10073738-10073757 | None:intergenic | 30.0% | |
| ! | TATTTTCCATGAGAGAATGT+TGG | + | chr8_1:10073925-10073944 | Msa1177680:intron | 30.0% |
| ! | TCATAAGATGAGGCTTTTTA+GGG | - | chr8_1:10074070-10074089 | None:intergenic | 30.0% |
| ! | ATCATAAGATGAGGCTTTTT+AGG | - | chr8_1:10074071-10074090 | None:intergenic | 30.0% |
| ! | TCTTGTTATCTTGAAGTTGT+TGG | - | chr8_1:10074325-10074344 | None:intergenic | 30.0% |
| AGAAGACAACATCAATGTAA+AGG | + | chr8_1:10074377-10074396 | Msa1177680:CDS | 30.0% | |
| GAAGACAACATCAATGTAAA+GGG | + | chr8_1:10074378-10074397 | Msa1177680:CDS | 30.0% | |
| AAGACAACATCAATGTAAAG+GGG | + | chr8_1:10074379-10074398 | Msa1177680:CDS | 30.0% | |
| ! | GATTGTTTTCTCATTGATGA+AGG | - | chr8_1:10074475-10074494 | None:intergenic | 30.0% |
| AAATGATGTGAATGAGATCA+AGG | - | chr8_1:10074590-10074609 | None:intergenic | 30.0% | |
| AAGGCATGACAAATTTACAA+AGG | + | chr8_1:10074812-10074831 | Msa1177680:CDS | 30.0% | |
| AGGCATGACAAATTTACAAA+GGG | + | chr8_1:10074813-10074832 | Msa1177680:CDS | 30.0% | |
| CTTGAAAAAATTGCTTAAGG+AGG | + | chr8_1:10074896-10074915 | Msa1177680:CDS | 30.0% | |
| TTGGCATGGTATTATTAATG+AGG | + | chr8_1:10074944-10074963 | Msa1177680:CDS | 30.0% | |
| !! | TAATATTGATGATGAAACGG+TGG | + | chr8_1:10075037-10075056 | Msa1177680:CDS | 30.0% |
| !! | AAAGGATAAGAGCATTTGTA+GGG | + | chr8_1:10075072-10075091 | Msa1177680:CDS | 30.0% |
| GTGAAGCTAAGACTTAAATT+TGG | - | chr8_1:10075137-10075156 | None:intergenic | 30.0% | |
| GATATGATTATGTGATTGTG+AGG | - | chr8_1:10075191-10075210 | None:intergenic | 30.0% | |
| !!! | TTTTGTTTTTCTTCCTAGTG+AGG | + | chr8_1:10075352-10075371 | Msa1177680:three_prime_UTR | 30.0% |
| !!! | ATTCTCCATATTTTGATGGC+TGG | + | chr8_1:10071789-10071808 | Msa1177680:CDS | 35.0% |
| !!! | GGATTTTTTTTAGGGTGGAA+TGG | - | chr8_1:10071833-10071852 | None:intergenic | 35.0% |
| CACCCTAAAAAAAATCCTCA+GGG | + | chr8_1:10071836-10071855 | Msa1177680:CDS | 35.0% | |
| !!! | CACCCTGAGGATTTTTTTTA+GGG | - | chr8_1:10071841-10071860 | None:intergenic | 35.0% |
| !!! | ACACCCTGAGGATTTTTTTT+AGG | - | chr8_1:10071842-10071861 | None:intergenic | 35.0% |
| GCTTTGATCTGATTGAAGAA+TGG | + | chr8_1:10072214-10072233 | Msa1177680:CDS | 35.0% | |
| GCTAACTATCAAGACTATCA+TGG | + | chr8_1:10072300-10072319 | Msa1177680:CDS | 35.0% | |
| TTTATGTCAAAAGTGAGAGG+TGG | + | chr8_1:10072486-10072505 | Msa1177680:CDS | 35.0% | |
| TGTATGCAACCAAATTCAGA+TGG | - | chr8_1:10072774-10072793 | None:intergenic | 35.0% | |
| TTGGTTGCATACATGTCAAA+TGG | + | chr8_1:10072781-10072800 | Msa1177680:intron | 35.0% | |
| TGGTTGCATACATGTCAAAT+GGG | + | chr8_1:10072782-10072801 | Msa1177680:intron | 35.0% | |
| GTGGACAGAATTAACTTCAT+AGG | - | chr8_1:10072956-10072975 | None:intergenic | 35.0% | |
| GCAATTACCACATAAATGTG+GGG | - | chr8_1:10073026-10073045 | None:intergenic | 35.0% | |
| GTGCAATTACCACATAAATG+TGG | - | chr8_1:10073028-10073047 | None:intergenic | 35.0% | |
| ! | GAAACTCAACCTTTTGTTGA+TGG | - | chr8_1:10073158-10073177 | None:intergenic | 35.0% |
| ! | GTCATGAGGTAGTCTATTTT+GGG | - | chr8_1:10073386-10073405 | None:intergenic | 35.0% |
| ! | AGTCATGAGGTAGTCTATTT+TGG | - | chr8_1:10073387-10073406 | None:intergenic | 35.0% |
| GCTGAGATAGAAATATATCG+AGG | + | chr8_1:10073481-10073500 | Msa1177680:intron | 35.0% | |
| ACCCTACACAAAGATGTTTA+TGG | - | chr8_1:10073610-10073629 | None:intergenic | 35.0% | |
| AAGAAAAGTAAGGAACACGA+TGG | + | chr8_1:10073656-10073675 | Msa1177680:intron | 35.0% | |
| GCCATAAAACATTGATCCAA+CGG | - | chr8_1:10073797-10073816 | None:intergenic | 35.0% | |
| ATTCATCCAACATTCTCTCA+TGG | - | chr8_1:10073934-10073953 | None:intergenic | 35.0% | |
| ! | GCTTGGCTGACATTAATTTT+TGG | - | chr8_1:10074017-10074036 | None:intergenic | 35.0% |
| ! | TGTCTAAGGTTGTACCTAAT+GGG | - | chr8_1:10074428-10074447 | None:intergenic | 35.0% |
| ! | TTGTCTAAGGTTGTACCTAA+TGG | - | chr8_1:10074429-10074448 | None:intergenic | 35.0% |
| CTTTAGTGTCTCTTTGTCTA+AGG | - | chr8_1:10074442-10074461 | None:intergenic | 35.0% | |
| TGATGAAATTTATGCAGCCA+CGG | + | chr8_1:10074506-10074525 | Msa1177680:CDS | 35.0% | |
| TCACTAACACTTACATAGCT+AGG | - | chr8_1:10074543-10074562 | None:intergenic | 35.0% | |
| AATGATCAAGTGGTGAATTG+TGG | + | chr8_1:10074669-10074688 | Msa1177680:CDS | 35.0% | |
| ! | GGAAGGAAAATGTCAAGTTT+TGG | + | chr8_1:10074690-10074709 | Msa1177680:CDS | 35.0% |
| !! | TTCTTTTAGAGAGTTCGAGA+AGG | + | chr8_1:10074781-10074800 | Msa1177680:CDS | 35.0% |
| GTTCGAGAAGGTTGTTAAAA+AGG | + | chr8_1:10074793-10074812 | Msa1177680:CDS | 35.0% | |
| ! | TAGTCGATTTCCAAGTAATG+CGG | + | chr8_1:10074854-10074873 | Msa1177680:CDS | 35.0% |
| TTGAAGAAGAGTTGAAGCTT+TGG | + | chr8_1:10074925-10074944 | Msa1177680:CDS | 35.0% | |
| !! | GTCTTCTTTTAATTGCTCTG+AGG | + | chr8_1:10074989-10075008 | Msa1177680:CDS | 35.0% |
| !!! | TCTTTTAATTGCTCTGAGGT+TGG | + | chr8_1:10074993-10075012 | Msa1177680:CDS | 35.0% |
| !! | CAAAGGATAAGAGCATTTGT+AGG | + | chr8_1:10075071-10075090 | Msa1177680:CDS | 35.0% |
| AGAAAGTTGAAGTCAAACGT+TGG | + | chr8_1:10075108-10075127 | Msa1177680:CDS | 35.0% | |
| TAAGTCTTAGCTTCACTTCA+AGG | + | chr8_1:10075141-10075160 | Msa1177680:CDS | 35.0% | |
| CTATGGAAAAAAACCTCACT+AGG | - | chr8_1:10075368-10075387 | None:intergenic | 35.0% | |
| TTTAGCTAGCTAGAACACTA+TGG | - | chr8_1:10075385-10075404 | None:intergenic | 35.0% | |
| CTAAAGTGATCTTTGTGTGT+AGG | + | chr8_1:10075400-10075419 | Msa1177680:three_prime_UTR | 35.0% | |
| ! | AGCTAATTTGTGTGTGAAGT+AGG | + | chr8_1:10075442-10075461 | Msa1177680:three_prime_UTR | 35.0% |
| ! | TTGGTCATTGGTTGCTATCT+TGG | - | chr8_1:10071759-10071778 | None:intergenic | 40.0% |
| ATAGCAACCAATGACCAACA+TGG | + | chr8_1:10071761-10071780 | Msa1177680:CDS | 40.0% | |
| TAGCAACCAATGACCAACAT+GGG | + | chr8_1:10071762-10071781 | Msa1177680:CDS | 40.0% | |
| ! | ATTTTCCCCATGTTGGTCAT+TGG | - | chr8_1:10071771-10071790 | None:intergenic | 40.0% |
| ! | ATGGAGAATTTTCCCCATGT+TGG | - | chr8_1:10071778-10071797 | None:intergenic | 40.0% |
| GCTTTCCAGCCATCAAAATA+TGG | - | chr8_1:10071797-10071816 | None:intergenic | 40.0% | |
| !!! | CCTGAGGATTTTTTTTAGGG+TGG | - | chr8_1:10071838-10071857 | None:intergenic | 40.0% |
| CCACCCTAAAAAAAATCCTC+AGG | + | chr8_1:10071835-10071854 | Msa1177680:CDS | 40.0% | |
| ! | AGAAGGAGTGTGTAAGTTCA+GGG | + | chr8_1:10072272-10072291 | Msa1177680:CDS | 40.0% |
| GTGCTTACACTTGTAAACTC+TGG | - | chr8_1:10072330-10072349 | None:intergenic | 40.0% | |
| CCACTCATCAATATACGGTT+TGG | - | chr8_1:10072528-10072547 | None:intergenic | 40.0% | |
| CCAAACCGTATATTGATGAG+TGG | + | chr8_1:10072525-10072544 | Msa1177680:CDS | 40.0% | |
| AACCGTATATTGATGAGTGG+AGG | + | chr8_1:10072528-10072547 | Msa1177680:CDS | 40.0% | |
| ACCGTATATTGATGAGTGGA+GGG | + | chr8_1:10072529-10072548 | Msa1177680:CDS | 40.0% | |
| ATGCATACCCTGGATAGAAA+GGG | - | chr8_1:10072623-10072642 | None:intergenic | 40.0% | |
| GTGATAAAATCTATGTGCCG+TGG | + | chr8_1:10072746-10072765 | Msa1177680:intron | 40.0% | |
| AATGTGGGGACTCAAAAATG+AGG | - | chr8_1:10073012-10073031 | None:intergenic | 40.0% | |
| TTTGAGTCCCCACATTTATG+TGG | + | chr8_1:10073016-10073035 | Msa1177680:intron | 40.0% | |
| ACACGACTCAGACATAAGTT+AGG | + | chr8_1:10073085-10073104 | Msa1177680:intron | 40.0% | |
| ! | TAAGGAACACGATGGATTTC+AGG | + | chr8_1:10073664-10073683 | Msa1177680:intron | 40.0% |
| GCTGTCCGATCATAAATAAG+TGG | + | chr8_1:10073730-10073749 | Msa1177680:intron | 40.0% | |
| ! | GCCGTTGGATCAATGTTTTA+TGG | + | chr8_1:10073793-10073812 | Msa1177680:intron | 40.0% |
| CACAAATGAAAGGACCTGAA+AGG | - | chr8_1:10073875-10073894 | None:intergenic | 40.0% | |
| GTTTCGGAAAGTGATTGAGT+TGG | + | chr8_1:10074039-10074058 | Msa1177680:intron | 40.0% | |
| TAGTTCTCCAACACAAGTCA+CGG | - | chr8_1:10074269-10074288 | None:intergenic | 40.0% | |
| ! | TGACTTGTGTTGGAGAACTA+AGG | + | chr8_1:10074269-10074288 | Msa1177680:CDS | 40.0% |
| AGTTGTTGGAGCTATCACAA+TGG | - | chr8_1:10074311-10074330 | None:intergenic | 40.0% | |
| ! | TAAGGTTGTACCTAATGGGT+TGG | - | chr8_1:10074424-10074443 | None:intergenic | 40.0% |
| AACACTTACATAGCTAGGTG+AGG | - | chr8_1:10074538-10074557 | None:intergenic | 40.0% | |
| TCAAAAGACTTAGGGTTTCC+TGG | + | chr8_1:10074618-10074637 | Msa1177680:CDS | 40.0% | |
| !! | ACTTAGGGTTTCCTGGTTTT+AGG | + | chr8_1:10074625-10074644 | Msa1177680:CDS | 40.0% |
| !!! | CTTAGGGTTTCCTGGTTTTA+GGG | + | chr8_1:10074626-10074645 | Msa1177680:CDS | 40.0% |
| ATCAAGTGGTGAATTGTGGA+AGG | + | chr8_1:10074673-10074692 | Msa1177680:CDS | 40.0% | |
| ATTTACAAAGGGACTCGAAG+AGG | + | chr8_1:10074824-10074843 | Msa1177680:CDS | 40.0% | |
| ! | AGTCGATTTCCAAGTAATGC+GGG | + | chr8_1:10074855-10074874 | Msa1177680:CDS | 40.0% |
| CAAAAAAGTCCCGCATTACT+TGG | - | chr8_1:10074867-10074886 | None:intergenic | 40.0% | |
| GAGCAATTAAAAGAAGACCC+CGG | - | chr8_1:10074987-10075006 | None:intergenic | 40.0% | |
| !! | TTAATTGCTCTGAGGTTGGT+TGG | + | chr8_1:10074997-10075016 | Msa1177680:CDS | 40.0% |
| TCACAAATAGCTAGCTAGCT+AGG | - | chr8_1:10075332-10075351 | None:intergenic | 40.0% | |
| AGCAACCAATGACCAACATG+GGG | + | chr8_1:10071763-10071782 | Msa1177680:CDS | 45.0% | |
| TCCTCAGGGTGTAATTCAGA+TGG | + | chr8_1:10071850-10071869 | Msa1177680:CDS | 45.0% | |
| CCTCAGGGTGTAATTCAGAT+GGG | + | chr8_1:10071851-10071870 | Msa1177680:CDS | 45.0% | |
| GATGGGTCTTGCTGAAAATC+AGG | + | chr8_1:10071868-10071887 | Msa1177680:CDS | 45.0% | |
| GGAGTGCAAATTGAAGCCTT+GGG | - | chr8_1:10072252-10072271 | None:intergenic | 45.0% | |
| TGGAGTGCAAATTGAAGCCT+TGG | - | chr8_1:10072253-10072272 | None:intergenic | 45.0% | |
| GCTTCAATTTGCACTCCAGA+AGG | + | chr8_1:10072255-10072274 | Msa1177680:CDS | 45.0% | |
| CTGAACTTACACACTCCTTC+TGG | - | chr8_1:10072273-10072292 | None:intergenic | 45.0% | |
| ! | CAGAAGGAGTGTGTAAGTTC+AGG | + | chr8_1:10072271-10072290 | Msa1177680:CDS | 45.0% |
| TGTCAAAAGTGAGAGGTGGT+AGG | + | chr8_1:10072490-10072509 | Msa1177680:CDS | 45.0% | |
| GTCAAAAGTGAGAGGTGGTA+GGG | + | chr8_1:10072491-10072510 | Msa1177680:CDS | 45.0% | |
| CCCCTCCACTCATCAATATA+CGG | - | chr8_1:10072533-10072552 | None:intergenic | 45.0% | |
| CCGTATATTGATGAGTGGAG+GGG | + | chr8_1:10072530-10072549 | Msa1177680:CDS | 45.0% | |
| ! | ATGTTTTGCTTGGCTGATCC+AGG | + | chr8_1:10072576-10072595 | Msa1177680:CDS | 45.0% |
| !! | GGAACTAGAAAAGCATCTCC+TGG | - | chr8_1:10072597-10072616 | None:intergenic | 45.0% |
| TTCCTACCCCTTTCTATCCA+GGG | + | chr8_1:10072613-10072632 | Msa1177680:CDS | 45.0% | |
| TGCATACCCTGGATAGAAAG+GGG | - | chr8_1:10072622-10072641 | None:intergenic | 45.0% | |
| CATGCATACCCTGGATAGAA+AGG | - | chr8_1:10072624-10072643 | None:intergenic | 45.0% | |
| ! | GAAAAGGTACATGCATACCC+TGG | - | chr8_1:10072633-10072652 | None:intergenic | 45.0% |
| ! | ACCAAATTCAGATGGTGCCA+CGG | - | chr8_1:10072766-10072785 | None:intergenic | 45.0% |
| AACACCTCACTTAGATGGAG+AGG | - | chr8_1:10072978-10072997 | None:intergenic | 45.0% | |
| AGGGTAACACCTCACTTAGA+TGG | - | chr8_1:10072983-10073002 | None:intergenic | 45.0% | |
| CTACCTCATGACTCATAGCT+TGG | + | chr8_1:10073394-10073413 | Msa1177680:intron | 45.0% | |
| GTAGAACAAATCTGAGCCGT+TGG | + | chr8_1:10073778-10073797 | Msa1177680:intron | 45.0% | |
| !! | TCGGAAAGTGATTGAGTTGG+TGG | + | chr8_1:10074042-10074061 | Msa1177680:intron | 45.0% |
| TTGGAGCTATCACAATGGAC+AGG | - | chr8_1:10074306-10074325 | None:intergenic | 45.0% | |
| !! | TTGTACCTAATGGGTTGGAG+GGG | - | chr8_1:10074419-10074438 | None:intergenic | 45.0% |
| !! | GTTGTACCTAATGGGTTGGA+GGG | - | chr8_1:10074420-10074439 | None:intergenic | 45.0% |
| !!! | GGTTTCCTGGTTTTAGGGTT+GGG | + | chr8_1:10074631-10074650 | Msa1177680:CDS | 45.0% |
| ACTATCCCAACCCTAAAACC+AGG | - | chr8_1:10074639-10074658 | None:intergenic | 45.0% | |
| !!! | GTAATGCGGGACTTTTTTGC+TGG | + | chr8_1:10074868-10074887 | Msa1177680:CDS | 45.0% |
| ! | GAAGAGTTGAAGCTTTGGCA+TGG | + | chr8_1:10074930-10074949 | Msa1177680:CDS | 45.0% |
| GGTGAAGCTTAATGTGTCAC+CGG | + | chr8_1:10074965-10074984 | Msa1177680:CDS | 45.0% | |
| GTGAAGCTTAATGTGTCACC+GGG | + | chr8_1:10074966-10074985 | Msa1177680:CDS | 45.0% | |
| TGAAGCTTAATGTGTCACCG+GGG | + | chr8_1:10074967-10074986 | Msa1177680:CDS | 45.0% | |
| !! | CTCTGAGGTTGGTTGGTTTA+GGG | + | chr8_1:10075004-10075023 | Msa1177680:CDS | 45.0% |
| CGGTGGAAATTGCATTGCAA+AGG | + | chr8_1:10075054-10075073 | Msa1177680:CDS | 45.0% | |
| GTCTTAGCTTCACTTCAAGG+AGG | + | chr8_1:10075144-10075163 | Msa1177680:CDS | 45.0% | |
| ATTCATGTGGCTCGAACAAG+TGG | - | chr8_1:10075224-10075243 | None:intergenic | 45.0% | |
| CCCATCTGAATTACACCCTG+AGG | - | chr8_1:10071854-10071873 | None:intergenic | 50.0% | |
| GTTCCTACCCCTTTCTATCC+AGG | + | chr8_1:10072612-10072631 | Msa1177680:CDS | 50.0% | |
| TACCCTGGATAGAAAGGGGT+AGG | - | chr8_1:10072618-10072637 | None:intergenic | 50.0% | |
| TCCACCTCTCCATCTAAGTG+AGG | + | chr8_1:10072971-10072990 | Msa1177680:intron | 50.0% | |
| ACCTCACTTAGATGGAGAGG+TGG | - | chr8_1:10072975-10072994 | None:intergenic | 50.0% | |
| CCACCAAGCTATGAGTCATG+AGG | - | chr8_1:10073400-10073419 | None:intergenic | 50.0% | |
| CCTCATGACTCATAGCTTGG+TGG | + | chr8_1:10073397-10073416 | Msa1177680:intron | 50.0% | |
| GCAGATTTCCTGCTGTTAGC+AGG | + | chr8_1:10073689-10073708 | Msa1177680:intron | 50.0% | |
| TACAGCATCCTGCTAACAGC+AGG | - | chr8_1:10073700-10073719 | None:intergenic | 50.0% | |
| GCTGTTAGCAGGATGCTGTA+AGG | + | chr8_1:10073700-10073719 | Msa1177680:intron | 50.0% | |
| ! | CAACACGTTGTTTCACGCTG+TGG | - | chr8_1:10073829-10073848 | None:intergenic | 50.0% |
| AACGTGTTGCAGCTACAGCA+GGG | + | chr8_1:10073840-10073859 | Msa1177680:intron | 50.0% | |
| TGAAAGGACCTGAAAGGACC+TGG | - | chr8_1:10073869-10073888 | None:intergenic | 50.0% | |
| AATGTCAGCCAAGCGCGTTT+CGG | + | chr8_1:10074023-10074042 | Msa1177680:intron | 50.0% | |
| ATCACTTTCCGAAACGCGCT+TGG | - | chr8_1:10074034-10074053 | None:intergenic | 50.0% | |
| ! | GATTCGTCCGTGACTTGTGT+TGG | + | chr8_1:10074259-10074278 | Msa1177680:intron | 50.0% |
| ACAAACCCCTCCAACCCATT+AGG | + | chr8_1:10074411-10074430 | Msa1177680:CDS | 50.0% | |
| !! | GGTTGTACCTAATGGGTTGG+AGG | - | chr8_1:10074421-10074440 | None:intergenic | 50.0% |
| GCTAGGTGAGGTAAAAACCG+TGG | - | chr8_1:10074526-10074545 | None:intergenic | 50.0% | |
| !!! | GGGTTTCCTGGTTTTAGGGT+TGG | + | chr8_1:10074630-10074649 | Msa1177680:CDS | 50.0% |
| !! | GCTCTGAGGTTGGTTGGTTT+AGG | + | chr8_1:10075003-10075022 | Msa1177680:CDS | 50.0% |
| GCTCGAACAAGTGGTGAATG+AGG | - | chr8_1:10075215-10075234 | None:intergenic | 50.0% | |
| TTGATGAGTGGAGGGGCAAC+AGG | + | chr8_1:10072537-10072556 | Msa1177680:CDS | 55.0% | |
| TGATGAGTGGAGGGGCAACA+GGG | + | chr8_1:10072538-10072557 | Msa1177680:CDS | 55.0% | |
| GCCGTGGCACCATCTGAATT+TGG | + | chr8_1:10072762-10072781 | Msa1177680:intron | 55.0% | |
| CAACGTGTTGCAGCTACAGC+AGG | + | chr8_1:10073839-10073858 | Msa1177680:intron | 55.0% | |
| CAGGGAATCCAGGTCCTTTC+AGG | + | chr8_1:10073858-10073877 | Msa1177680:intron | 55.0% | |
| GATGAGTGGAGGGGCAACAG+GGG | + | chr8_1:10072539-10072558 | Msa1177680:CDS | 60.0% | |
| GCAGCTACAGCAGGGAATCC+AGG | + | chr8_1:10073848-10073867 | Msa1177680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 10071666 | 10075465 | 10071666 | ID=Msa1177680;Name=Msa1177680 |
| chr8_1 | mRNA | 10071666 | 10075465 | 10071666 | ID=Msa1177680-mRNA-1;Parent=Msa1177680;Name=Msa1177680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=56|1|1|1|1|1|4|224|480 |
| chr8_1 | exon | 10071666 | 10071889 | 10071666 | ID=Msa1177680-mRNA-1:exon:3447;Parent=Msa1177680-mRNA-1 |
| chr8_1 | exon | 10072210 | 10072341 | 10072210 | ID=Msa1177680-mRNA-1:exon:3448;Parent=Msa1177680-mRNA-1 |
| chr8_1 | exon | 10072474 | 10072634 | 10072474 | ID=Msa1177680-mRNA-1:exon:3449;Parent=Msa1177680-mRNA-1 |
| chr8_1 | exon | 10074260 | 10075465 | 10074260 | ID=Msa1177680-mRNA-1:exon:3450;Parent=Msa1177680-mRNA-1 |
| chr8_1 | five_prime_UTR | 10071666 | 10071721 | 10071666 | ID=Msa1177680-mRNA-1:five_prime_utr;Parent=Msa1177680-mRNA-1 |
| chr8_1 | CDS | 10071722 | 10071889 | 10071722 | ID=Msa1177680-mRNA-1:cds;Parent=Msa1177680-mRNA-1 |
| chr8_1 | CDS | 10072210 | 10072341 | 10072210 | ID=Msa1177680-mRNA-1:cds;Parent=Msa1177680-mRNA-1 |
| chr8_1 | CDS | 10072474 | 10072634 | 10072474 | ID=Msa1177680-mRNA-1:cds;Parent=Msa1177680-mRNA-1 |
| chr8_1 | CDS | 10074260 | 10075241 | 10074260 | ID=Msa1177680-mRNA-1:cds;Parent=Msa1177680-mRNA-1 |
| chr8_1 | three_prime_UTR | 10075242 | 10075465 | 10075242 | ID=Msa1177680-mRNA-1:three_prime_utr;Parent=Msa1177680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
