Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317770 | sp|Q9MB95|1A11_PRUMU | 70.747 | 482 | 126 | 3 | 10 | 479 | 12 | 490 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317770 | A0A072TNM7 | 97.708 | 480 | 11 | 0 | 1 | 480 | 1 | 480 | 0.0 | 981 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa1317770 | 0.805063 | 1.599799e-49 | -8.615850e-47 |
| Msa0058310 | Msa1317770 | 0.800083 | 1.702257e-48 | -8.615850e-47 |
| Msa0621600 | Msa1317770 | 0.802945 | 4.409672e-49 | -8.615850e-47 |
| Msa0186950 | Msa1317770 | 0.802016 | 6.851172e-49 | -8.615850e-47 |
| Msa1237350 | Msa1317770 | 0.907055 | 7.658601e-81 | -8.615850e-47 |
| Msa1270660 | Msa1317770 | 0.824388 | 8.291929e-54 | -8.615850e-47 |
| Msa1270730 | Msa1317770 | 0.822928 | 1.821707e-53 | -8.615850e-47 |
| Msa1278500 | Msa1317770 | 0.929211 | 9.617834e-93 | -8.615850e-47 |
| Msa1291450 | Msa1317770 | 0.806108 | 9.654812e-50 | -8.615850e-47 |
| Msa1317770 | Msa1335230 | 0.807736 | 4.368879e-50 | -8.615850e-47 |
| Msa1317770 | Msa1341490 | 0.802644 | 5.087264e-49 | -8.615850e-47 |
| Msa1317770 | Msa1397120 | 0.815187 | 1.051041e-51 | -8.615850e-47 |
| Msa1317770 | Msa1403890 | 0.807299 | 5.409510e-50 | -8.615850e-47 |
| Msa1317770 | Msa1407600 | 0.808908 | 2.457402e-50 | -8.615850e-47 |
| Msa1317770 | Msa1423820 | 0.820161 | 7.937633e-53 | -8.615850e-47 |
| Msa1317770 | Msa1426570 | 0.802675 | 5.014173e-49 | -8.615850e-47 |
| Msa0376910 | Msa1317770 | 0.813293 | 2.754396e-51 | -8.615850e-47 |
| Msa0471900 | Msa1317770 | 0.819831 | 9.444749e-53 | -8.615850e-47 |
| Msa0999100 | Msa1317770 | 0.804620 | 1.979116e-49 | -8.615850e-47 |
| Msa1026640 | Msa1317770 | 0.805085 | 1.582541e-49 | -8.615850e-47 |
| Msa1029620 | Msa1317770 | 0.801044 | 1.084013e-48 | -8.615850e-47 |
| Msa0284740 | Msa1317770 | 0.802958 | 4.381230e-49 | -8.615850e-47 |
| Msa0311720 | Msa1317770 | 0.800498 | 1.400937e-48 | -8.615850e-47 |
| Msa0326110 | Msa1317770 | 0.806588 | 7.646375e-50 | -8.615850e-47 |
| Msa1107260 | Msa1317770 | 0.803878 | 2.825175e-49 | -8.615850e-47 |
| Msa1130530 | Msa1317770 | 0.804557 | 2.040577e-49 | -8.615850e-47 |
| Msa1177680 | Msa1317770 | 0.826843 | 2.171686e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317770 | MtrunA17_Chr8g0348351 | 97.708 | 480 | 11 | 0 | 1 | 480 | 1 | 480 | 0.0 | 981 |
| Msa1317770 | MtrunA17_Chr7g0248681 | 79.339 | 484 | 96 | 3 | 1 | 480 | 1 | 484 | 0.0 | 782 |
| Msa1317770 | MtrunA17_Chr8g0387481 | 65.625 | 480 | 154 | 3 | 9 | 480 | 10 | 486 | 0.0 | 678 |
| Msa1317770 | MtrunA17_Chr6g0488041 | 56.250 | 432 | 187 | 2 | 11 | 441 | 14 | 444 | 0.0 | 526 |
| Msa1317770 | MtrunA17_Chr4g0054371 | 52.860 | 437 | 196 | 2 | 9 | 435 | 2 | 438 | 0.0 | 514 |
| Msa1317770 | MtrunA17_Chr8g0389311 | 55.012 | 429 | 185 | 2 | 11 | 438 | 12 | 433 | 0.0 | 514 |
| Msa1317770 | MtrunA17_Chr8g0389321 | 55.012 | 429 | 185 | 2 | 11 | 438 | 12 | 433 | 0.0 | 514 |
| Msa1317770 | MtrunA17_Chr3g0135251 | 53.991 | 426 | 191 | 2 | 10 | 430 | 1 | 426 | 5.83e-178 | 508 |
| Msa1317770 | MtrunA17_Chr5g0400831 | 53.118 | 433 | 194 | 3 | 9 | 432 | 2 | 434 | 4.29e-177 | 505 |
| Msa1317770 | MtrunA17_Chr6g0475681 | 41.766 | 419 | 243 | 1 | 11 | 428 | 104 | 522 | 2.76e-129 | 385 |
| Msa1317770 | MtrunA17_Chr5g0398431 | 39.609 | 409 | 246 | 1 | 23 | 430 | 84 | 492 | 3.46e-116 | 350 |
| Msa1317770 | MtrunA17_Chr2g0324801 | 22.507 | 351 | 234 | 12 | 94 | 430 | 51 | 377 | 2.69e-13 | 71.2 |
| Msa1317770 | MtrunA17_Chr5g0412871 | 23.729 | 177 | 130 | 4 | 86 | 260 | 100 | 273 | 4.28e-13 | 71.2 |
| Msa1317770 | MtrunA17_Chr8g0345201 | 23.284 | 335 | 232 | 11 | 119 | 430 | 182 | 514 | 2.48e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317770 | AT3G61510.1 | 64.386 | 497 | 150 | 5 | 1 | 479 | 1 | 488 | 0.0 | 664 |
| Msa1317770 | AT1G01480.1 | 62.903 | 496 | 160 | 5 | 4 | 479 | 5 | 496 | 0.0 | 646 |
| Msa1317770 | AT4G11280.1 | 63.034 | 468 | 160 | 4 | 6 | 460 | 10 | 477 | 0.0 | 615 |
| Msa1317770 | AT4G37770.1 | 57.277 | 426 | 178 | 1 | 10 | 431 | 3 | 428 | 0.0 | 527 |
| Msa1317770 | AT4G26200.1 | 57.343 | 429 | 180 | 2 | 11 | 436 | 18 | 446 | 0.0 | 523 |
| Msa1317770 | AT4G08040.1 | 53.319 | 452 | 199 | 3 | 10 | 449 | 1 | 452 | 0.0 | 517 |
| Msa1317770 | AT2G22810.1 | 54.734 | 433 | 191 | 3 | 11 | 438 | 4 | 436 | 6.87e-176 | 502 |
| Msa1317770 | AT3G49700.1 | 53.349 | 433 | 198 | 1 | 11 | 439 | 4 | 436 | 1.70e-174 | 499 |
| Msa1317770 | AT5G65800.1 | 53.864 | 427 | 192 | 2 | 9 | 431 | 3 | 428 | 8.37e-174 | 497 |
| Msa1317770 | AT1G01480.2 | 61.929 | 394 | 126 | 5 | 106 | 479 | 1 | 390 | 6.01e-172 | 489 |
| Msa1317770 | AT5G51690.1 | 41.278 | 407 | 238 | 1 | 23 | 428 | 81 | 487 | 2.86e-123 | 369 |
| Msa1317770 | AT5G51690.2 | 41.643 | 353 | 206 | 0 | 76 | 428 | 12 | 364 | 5.51e-108 | 325 |
| Msa1317770 | AT1G62960.1 | 39.225 | 413 | 242 | 6 | 19 | 428 | 141 | 547 | 1.66e-107 | 330 |
| Msa1317770 | AT1G72330.1 | 24.036 | 337 | 231 | 10 | 117 | 430 | 196 | 530 | 3.60e-16 | 81.6 |
| Msa1317770 | AT1G23310.2 | 26.554 | 177 | 125 | 4 | 86 | 260 | 100 | 273 | 7.56e-16 | 80.1 |
| Msa1317770 | AT1G23310.1 | 26.554 | 177 | 125 | 4 | 86 | 260 | 100 | 273 | 1.01e-15 | 79.7 |
| Msa1317770 | AT1G17290.1 | 23.442 | 337 | 233 | 10 | 117 | 430 | 199 | 533 | 5.45e-15 | 77.8 |
| Msa1317770 | AT1G70580.4 | 25.424 | 177 | 127 | 4 | 86 | 260 | 100 | 273 | 1.92e-14 | 75.9 |
| Msa1317770 | AT1G70580.2 | 25.424 | 177 | 127 | 4 | 86 | 260 | 100 | 273 | 1.92e-14 | 75.9 |
| Msa1317770 | AT1G70580.3 | 25.424 | 177 | 127 | 4 | 86 | 260 | 100 | 273 | 1.92e-14 | 75.9 |
| Msa1317770 | AT1G70580.1 | 25.424 | 177 | 127 | 4 | 86 | 260 | 100 | 273 | 1.92e-14 | 75.9 |
| Msa1317770 | AT1G72330.2 | 26.667 | 210 | 146 | 6 | 117 | 319 | 196 | 404 | 2.51e-14 | 75.5 |
| Msa1317770 | AT1G72330.3 | 22.857 | 350 | 232 | 10 | 117 | 430 | 196 | 543 | 5.31e-14 | 74.7 |
| Msa1317770 | AT4G23600.1 | 23.913 | 368 | 232 | 13 | 94 | 442 | 78 | 416 | 7.40e-14 | 73.9 |
| Msa1317770 | AT1G77670.1 | 23.580 | 352 | 237 | 14 | 93 | 439 | 116 | 440 | 2.44e-12 | 69.3 |
| Msa1317770 | AT4G23600.2 | 24.189 | 339 | 211 | 12 | 123 | 442 | 1 | 312 | 4.03e-12 | 67.8 |
| Msa1317770 | AT5G53970.1 | 21.429 | 364 | 238 | 14 | 94 | 438 | 76 | 410 | 1.54e-11 | 66.6 |
| Msa1317770 | AT4G28420.2 | 20.556 | 360 | 244 | 10 | 94 | 437 | 103 | 436 | 3.58e-11 | 65.5 |
| Msa1317770 | AT2G22250.1 | 22.606 | 376 | 252 | 17 | 68 | 428 | 65 | 416 | 5.84e-11 | 64.7 |
| Msa1317770 | AT2G22250.3 | 22.872 | 376 | 251 | 18 | 68 | 428 | 112 | 463 | 6.31e-11 | 64.7 |
| Msa1317770 | AT2G22250.2 | 22.872 | 376 | 251 | 18 | 68 | 428 | 112 | 463 | 6.31e-11 | 64.7 |
Find 111 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGAGGTTGGTTGGTTTA+GGG | 0.190705 | 8_4:+19331877 | Msa1317770:CDS |
| GAAGACAACATCAATGTAAA+AGG | 0.199753 | 8_4:+19331251 | Msa1317770:CDS |
| GTTCGAGAAGGTTGTTAAAA+AGG | 0.241887 | 8_4:+19331666 | Msa1317770:CDS |
| GCTCTGAGGTTGGTTGGTTT+AGG | 0.251907 | 8_4:+19331876 | Msa1317770:CDS |
| AGATTTCATCACAAACTAAA+TGG | 0.259841 | 8_4:-19331367 | None:intergenic |
| GTGAAGCTAAGACTTAAATT+TGG | 0.263791 | 8_4:-19332007 | None:intergenic |
| CTTTAGTGTCTCTTTGTCTA+AGG | 0.264938 | 8_4:-19331312 | None:intergenic |
| TTGTCTAAGGTTGTACCTAA+TGG | 0.267027 | 8_4:-19331299 | None:intergenic |
| AACTATATTAAACATGAGTT+TGG | 0.271300 | 8_4:+19328590 | Msa1317770:exon |
| TCTTGTTATCTTGAAGTTGT+TGG | 0.286651 | 8_4:-19331195 | None:intergenic |
| CAAAGGATAAGAGTATTTAT+AGG | 0.307066 | 8_4:+19331944 | Msa1317770:CDS |
| TTGATGAGTGGAGGGGCAAC+AGG | 0.323585 | 8_4:+19329418 | Msa1317770:CDS |
| ACTATATTAAACATGAGTTT+GGG | 0.323778 | 8_4:+19328591 | Msa1317770:exon |
| TTGTTCGAGCCACATGAATA+TGG | 0.328758 | 8_4:+19332098 | Msa1317770:exon |
| CTGAACTTACACACTCCTTC+TGG | 0.332505 | 8_4:-19329152 | None:intergenic |
| GCTTTCCACCCATCAAAATA+TGG | 0.339867 | 8_4:-19328675 | None:intergenic |
| TAAGGTATAAAATATAATTA+AGG | 0.345734 | 8_4:-19328562 | None:intergenic |
| TGTCTAAGGTTGTACCTAAT+GGG | 0.346338 | 8_4:-19331298 | None:intergenic |
| AAAGGATAAGAGTATTTATA+GGG | 0.354733 | 8_4:+19331945 | Msa1317770:CDS |
| TATAGTTTATCAAAAGACTT+AGG | 0.366855 | 8_4:+19331482 | Msa1317770:CDS |
| GGAAGGAAAATGTCAAGCTT+TGG | 0.368075 | 8_4:+19331563 | Msa1317770:CDS |
| GTTCCTACCCCTTTCTATCC+AGG | 0.392300 | 8_4:+19329493 | Msa1317770:CDS |
| CAGAAGGAGTGTGTAAGTTC+AGG | 0.392726 | 8_4:+19329153 | Msa1317770:CDS |
| TAAGTCTTAGCTTCACTTCA+AGG | 0.396222 | 8_4:+19332014 | Msa1317770:CDS |
| GCTAACTTTCAAGACTATCA+TGG | 0.397089 | 8_4:+19329182 | Msa1317770:CDS |
| TGGAGTGCAAATTGAAGCCT+TGG | 0.407080 | 8_4:-19329132 | None:intergenic |
| TTGAAGAAGAGTTGAAGCTT+TGG | 0.411415 | 8_4:+19331798 | Msa1317770:CDS |
| CCCCTCCACTCATCAATATA+CGG | 0.413279 | 8_4:-19329411 | None:intergenic |
| TTAATTGCTCTGAGGTTGGT+TGG | 0.417602 | 8_4:+19331870 | Msa1317770:CDS |
| GATGGGTCTTGCTGAAAATC+AGG | 0.425500 | 8_4:+19328749 | Msa1317770:CDS |
| AGCTAATTTGTGTGTGAAGT+AGG | 0.432425 | 8_4:+19332306 | Msa1317770:three_prime_UTR |
| ACAAACCCCTCCAACCCATT+AGG | 0.442463 | 8_4:+19331284 | Msa1317770:CDS |
| GCTTTGATCTGATTGAAGAA+TGG | 0.457254 | 8_4:+19329096 | Msa1317770:CDS |
| CCACTCATCAATATACGGTT+AGG | 0.463785 | 8_4:-19329406 | None:intergenic |
| CATGCATACCCTGGATAGAA+AGG | 0.467439 | 8_4:-19329502 | None:intergenic |
| TTGCAATCTTAGACAGAAGT+TGG | 0.469601 | 8_4:-19328626 | None:intergenic |
| TCGATAGTGTTCTAGCTACA+AGG | 0.469720 | 8_4:+19332249 | Msa1317770:three_prime_UTR |
| GCTAATTTGTGTGTGAAGTA+GGG | 0.475551 | 8_4:+19332307 | Msa1317770:three_prime_UTR |
| CTAACTTTCAAGACTATCAT+GGG | 0.476455 | 8_4:+19329183 | Msa1317770:CDS |
| ATAGTTTATCAAAAGACTTA+GGG | 0.480641 | 8_4:+19331483 | Msa1317770:CDS |
| TGCTAATATTGATGATGAAA+CGG | 0.483936 | 8_4:+19331907 | Msa1317770:CDS |
| TCAAAAGACTTAGGGTTCCC+TGG | 0.484527 | 8_4:+19331491 | Msa1317770:CDS |
| TCACTAACACTTACATAGCT+TGG | 0.485073 | 8_4:-19331413 | None:intergenic |
| TTCCTACCCCTTTCTATCCA+GGG | 0.485138 | 8_4:+19329494 | Msa1317770:CDS |
| TCACAAATAGCTAGCTAGCT+AGG | 0.487848 | 8_4:-19332198 | None:intergenic |
| CTACAAGGATCTTTGTGTGT+AGG | 0.488003 | 8_4:+19332264 | Msa1317770:three_prime_UTR |
| TGACTTGTGTTGGAGAACTA+AGG | 0.488847 | 8_4:+19331142 | Msa1317770:CDS |
| GGAACTAGAAAAGCATCTCC+TGG | 0.491345 | 8_4:-19329475 | None:intergenic |
| AGAAGGAGTGTGTAAGTTCA+GGG | 0.496417 | 8_4:+19329154 | Msa1317770:CDS |
| TCCTCAGGGTGTAATTCAGA+TGG | 0.501420 | 8_4:+19328731 | Msa1317770:CDS |
| GGAGTGCAAATTGAAGCCTT+GGG | 0.507315 | 8_4:-19329131 | None:intergenic |
| GTCAAAAGTAAGAGGTGGTA+GGG | 0.513449 | 8_4:+19329372 | Msa1317770:CDS |
| TGTCAAAAGTAAGAGGTGGT+AGG | 0.525297 | 8_4:+19329371 | Msa1317770:CDS |
| CTTGATAAAATAATTTGAGA+GGG | 0.525354 | 8_4:+19332162 | Msa1317770:three_prime_UTR |
| AAGACAACATCAATGTAAAA+GGG | 0.526004 | 8_4:+19331252 | Msa1317770:CDS |
| GTTGTACCTAATGGGTTGGA+GGG | 0.531299 | 8_4:-19331290 | None:intergenic |
| AGTCGATTTCCAAGTAATGC+GGG | 0.535799 | 8_4:+19331728 | Msa1317770:CDS |
| GAGTAAATTAGAATGTCCTA+TGG | 0.537021 | 8_4:+19332120 | Msa1317770:three_prime_UTR |
| ATGCATACCCTGGATAGAAA+GGG | 0.541474 | 8_4:-19329501 | None:intergenic |
| AGGCATGACAAATTTACAAA+GGG | 0.543731 | 8_4:+19331686 | Msa1317770:CDS |
| AAATTTATGTCAAAAGTAAG+AGG | 0.546529 | 8_4:+19329364 | Msa1317770:CDS |
| GATTCGTCCGTGACTTGTGT+TGG | 0.550678 | 8_4:+19331132 | Msa1317770:intron |
| GGTTGTACCTAATGGGTTGG+AGG | 0.552038 | 8_4:-19331291 | None:intergenic |
| TCTTGATAAAATAATTTGAG+AGG | 0.555864 | 8_4:+19332161 | Msa1317770:three_prime_UTR |
| GGTGAAGCTTAATGTGTCAC+CGG | 0.558827 | 8_4:+19331838 | Msa1317770:CDS |
| AAATGATGTGAATGAGATCA+TGG | 0.560479 | 8_4:-19331460 | None:intergenic |
| GTGAAGCTTAATGTGTCACC+GGG | 0.563590 | 8_4:+19331839 | Msa1317770:CDS |
| TAAGGTTGTACCTAATGGGT+TGG | 0.564708 | 8_4:-19331294 | None:intergenic |
| GCTTCAATTTGCACTCCAGA+AGG | 0.564795 | 8_4:+19329137 | Msa1317770:CDS |
| TGATGAGTGGAGGGGCAACA+GGG | 0.568770 | 8_4:+19329419 | Msa1317770:CDS |
| ACCGTATATTGATGAGTGGA+GGG | 0.569539 | 8_4:+19329410 | Msa1317770:CDS |
| TAATTTACTCCATATTCATG+TGG | 0.571162 | 8_4:-19332107 | None:intergenic |
| AACCGTATATTGATGAGTGG+AGG | 0.572345 | 8_4:+19329409 | Msa1317770:CDS |
| TTGGCATGTTATTATCAATG+AGG | 0.573325 | 8_4:+19331817 | Msa1317770:CDS |
| CTATCCCAACCCTAAAACCA+GGG | 0.576951 | 8_4:-19331508 | None:intergenic |
| CGGTGGAAATTGCATTGCAA+AGG | 0.577450 | 8_4:+19331927 | Msa1317770:CDS |
| ATTCATGTGGCTCGAACAAG+TGG | 0.579438 | 8_4:-19332094 | None:intergenic |
| AGAAAGAAAGAAAATTCCAT+AGG | 0.581526 | 8_4:-19332136 | None:intergenic |
| TTGGAGCTATCACAATGGAC+AGG | 0.589745 | 8_4:-19331176 | None:intergenic |
| ACTATCCCAACCCTAAAACC+AGG | 0.592159 | 8_4:-19331509 | None:intergenic |
| AATGATCAAGTGGTGAATTG+TGG | 0.596988 | 8_4:+19331542 | Msa1317770:CDS |
| GTGCTTACACTTGTAAACTC+AGG | 0.597517 | 8_4:-19329209 | None:intergenic |
| AAGGCATGACAAATTTACAA+AGG | 0.599045 | 8_4:+19331685 | Msa1317770:CDS |
| ATTTACAAAGGGACTCGAAG+AGG | 0.604697 | 8_4:+19331697 | Msa1317770:CDS |
| TAGTCGATTTCCAAGTAATG+CGG | 0.607200 | 8_4:+19331727 | Msa1317770:CDS |
| TTATTCATACAATGATCAAG+TGG | 0.611105 | 8_4:+19331532 | Msa1317770:CDS |
| TAGTTCTCCAACACAAGTCA+CGG | 0.615746 | 8_4:-19331139 | None:intergenic |
| CCTCAGGGTGTAATTCAGAT+GGG | 0.625600 | 8_4:+19328732 | Msa1317770:CDS |
| GATGAGTGGAGGGGCAACAG+GGG | 0.627412 | 8_4:+19329420 | Msa1317770:CDS |
| CTATATTAAACATGAGTTTG+GGG | 0.629964 | 8_4:+19328592 | Msa1317770:exon |
| ATCAAGTGGTGAATTGTGGA+AGG | 0.630178 | 8_4:+19331546 | Msa1317770:CDS |
| ATGGATAAAGAATAATCCCA+AGG | 0.631217 | 8_4:+19329115 | Msa1317770:CDS |
| GCTCGAACAAGTGGTGAATG+AGG | 0.631372 | 8_4:-19332085 | None:intergenic |
| CCTAACCGTATATTGATGAG+TGG | 0.638816 | 8_4:+19329406 | Msa1317770:CDS |
| TTGTACCTAATGGGTTGGAG+GGG | 0.640699 | 8_4:-19331289 | None:intergenic |
| AGAAAGTTGAAGTCAAACGT+TGG | 0.643437 | 8_4:+19331981 | Msa1317770:CDS |
| TACCCTGGATAGAAAGGGGT+AGG | 0.644778 | 8_4:-19329496 | None:intergenic |
| TTTATGTCAAAAGTAAGAGG+TGG | 0.644968 | 8_4:+19329367 | Msa1317770:CDS |
| GATATGATTATGTGATTGTG+AGG | 0.657848 | 8_4:-19332061 | None:intergenic |
| TGCATACCCTGGATAGAAAG+GGG | 0.660965 | 8_4:-19329500 | None:intergenic |
| TGATGAAATCTATGCAGCCA+CGG | 0.662191 | 8_4:+19331379 | Msa1317770:CDS |
| AACACTTACATAGCTTGGCG+AGG | 0.665335 | 8_4:-19331408 | None:intergenic |
| CCGTATATTGATGAGTGGAG+GGG | 0.666921 | 8_4:+19329411 | Msa1317770:CDS |
| GTCTTAGCTTCACTTCAAGG+AGG | 0.672185 | 8_4:+19332017 | Msa1317770:CDS |
| CCCATCTGAATTACACCCTG+AGG | 0.694079 | 8_4:-19328732 | None:intergenic |
| GAGCAATTAAAAGAAGACCC+CGG | 0.703258 | 8_4:-19331857 | None:intergenic |
| AGTTGTTGGAGCTATCACAA+TGG | 0.715860 | 8_4:-19331181 | None:intergenic |
| ATTGCAACCAATGACCAACA+TGG | 0.717312 | 8_4:+19328642 | Msa1317770:CDS |
| GCTTGGCGAGGTGAAAACCG+TGG | 0.728173 | 8_4:-19331396 | None:intergenic |
| TAATATTGATGATGAAACGG+TGG | 0.738048 | 8_4:+19331910 | Msa1317770:CDS |
| TGAAGCTTAATGTGTCACCG+GGG | 0.797341 | 8_4:+19331840 | Msa1317770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGGTATAAAATATAATTA+AGG | - | chr8_4:19328565-19328584 | None:intergenic | 10.0% |
| !! | ATAATAAATTATGAAAGAAA+AGG | - | chr8_4:19329530-19329549 | None:intergenic | 10.0% |
| !!! | GTTTAATATAGTTTTCTTTA+AGG | - | chr8_4:19328583-19328602 | None:intergenic | 15.0% |
| !! | TTAAAAATAAACTACAAATG+AGG | - | chr8_4:19328912-19328931 | None:intergenic | 15.0% |
| !! | TAATGAACTAATATAATGAT+TGG | + | chr8_4:19329272-19329291 | Msa1317770:intron | 15.0% |
| !! | AATGAACTAATATAATGATT+GGG | + | chr8_4:19329273-19329292 | Msa1317770:intron | 15.0% |
| !!! | TTTATTATATATTGTTTCTC+AGG | + | chr8_4:19329333-19329352 | Msa1317770:intron | 15.0% |
| !! | TTATATTCTTTGTATAAAGT+TGG | - | chr8_4:19330011-19330030 | None:intergenic | 15.0% |
| !!! | ATCAAATGAATAATTTTGAT+TGG | - | chr8_4:19330104-19330123 | None:intergenic | 15.0% |
| !!! | TGATTTTGTTTTTCAAATTA+CGG | - | chr8_4:19330323-19330342 | None:intergenic | 15.0% |
| !! | ATTTGAAAAACAAAATCATA+AGG | + | chr8_4:19330325-19330344 | Msa1317770:intron | 15.0% |
| !! | TTAAAAAAAATCATATGATG+AGG | - | chr8_4:19330953-19330972 | None:intergenic | 15.0% |
| !! | AACTATATTAAACATGAGTT+TGG | + | chr8_4:19328590-19328609 | Msa1317770:exon | 20.0% |
| !! | ACTATATTAAACATGAGTTT+GGG | + | chr8_4:19328591-19328610 | Msa1317770:exon | 20.0% |
| !!! | AAAATTCTCCATATTTTGAT+GGG | + | chr8_4:19328667-19328686 | Msa1317770:CDS | 20.0% |
| !!! | ACTCATTTGTAGTTTTTTTT+TGG | + | chr8_4:19328877-19328896 | Msa1317770:intron | 20.0% |
| !! | AATAACTAGTTACATCATAT+TGG | + | chr8_4:19329022-19329041 | Msa1317770:intron | 20.0% |
| !! | AAATTTATGTCAAAAGTAAG+AGG | + | chr8_4:19329364-19329383 | Msa1317770:CDS | 20.0% |
| !!! | ATGTTCATTTTAAATGCTAT+TGG | - | chr8_4:19329936-19329955 | None:intergenic | 20.0% |
| !! | AAGAAAGGAATATATCATAA+AGG | + | chr8_4:19330426-19330445 | Msa1317770:intron | 20.0% |
| !! | TATAGTTTATCAAAAGACTT+AGG | + | chr8_4:19331482-19331501 | Msa1317770:CDS | 20.0% |
| !! | ATAGTTTATCAAAAGACTTA+GGG | + | chr8_4:19331483-19331502 | Msa1317770:CDS | 20.0% |
| !!! | AAAGGATAAGAGTATTTATA+GGG | + | chr8_4:19331945-19331964 | Msa1317770:CDS | 20.0% |
| !! | TCTTGATAAAATAATTTGAG+AGG | + | chr8_4:19332161-19332180 | Msa1317770:three_prime_UTR | 20.0% |
| !! | CTTGATAAAATAATTTGAGA+GGG | + | chr8_4:19332162-19332181 | Msa1317770:three_prime_UTR | 20.0% |
| ! | CTATATTAAACATGAGTTTG+GGG | + | chr8_4:19328592-19328611 | Msa1317770:exon | 25.0% |
| !!! | GAAAATTCTCCATATTTTGA+TGG | + | chr8_4:19328666-19328685 | Msa1317770:CDS | 25.0% |
| ! | AAAAAAACTGCATGTTATTG+TGG | - | chr8_4:19328818-19328837 | None:intergenic | 25.0% |
| !!! | AGTTCATTAACCTTTTAAGT+TGG | - | chr8_4:19329261-19329280 | None:intergenic | 25.0% |
| !! | TTGGGCATATTTTTCTATAT+TGG | + | chr8_4:19329291-19329310 | Msa1317770:intron | 25.0% |
| !! | TGAATTAATCATGTTTTGCT+TGG | + | chr8_4:19329447-19329466 | Msa1317770:CDS | 25.0% |
| ! | CTCAAAAATGAAGAATCATA+GGG | - | chr8_4:19329883-19329902 | None:intergenic | 25.0% |
| ! | ACTCAAAAATGAAGAATCAT+AGG | - | chr8_4:19329884-19329903 | None:intergenic | 25.0% |
| ! | ATAACTATTCCATCAACAAA+AGG | + | chr8_4:19330027-19330046 | Msa1317770:intron | 25.0% |
| ! | CTGAGATAGAAATATATAGA+GGG | + | chr8_4:19330363-19330382 | Msa1317770:intron | 25.0% |
| ! | AAATATGTCACACAAATGAA+AGG | - | chr8_4:19330758-19330777 | None:intergenic | 25.0% |
| !!! | CATTTGTGTGACATATTTTT+TGG | + | chr8_4:19330760-19330779 | Msa1317770:intron | 25.0% |
| ! | AAGACAACATCAATGTAAAA+GGG | + | chr8_4:19331252-19331271 | Msa1317770:CDS | 25.0% |
| ! | AGATTTCATCACAAACTAAA+TGG | - | chr8_4:19331370-19331389 | None:intergenic | 25.0% |
| ! | TTATTCATACAATGATCAAG+TGG | + | chr8_4:19331532-19331551 | Msa1317770:CDS | 25.0% |
| ! | GAACTTGAAAAAATTGCTTA+AGG | + | chr8_4:19331766-19331785 | Msa1317770:CDS | 25.0% |
| !!! | TGCTAATATTGATGATGAAA+CGG | + | chr8_4:19331907-19331926 | Msa1317770:CDS | 25.0% |
| !!! | CAAAGGATAAGAGTATTTAT+AGG | + | chr8_4:19331944-19331963 | Msa1317770:CDS | 25.0% |
| ! | TAATTTACTCCATATTCATG+TGG | - | chr8_4:19332110-19332129 | None:intergenic | 25.0% |
| ! | AGAAAGAAAGAAAATTCCAT+AGG | - | chr8_4:19332139-19332158 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTCTTCCTAGTG+AGG | + | chr8_4:19332221-19332240 | Msa1317770:three_prime_UTR | 25.0% |
| !!! | GATTTTTTTTAGGGTGGAAT+GGG | - | chr8_4:19328713-19328732 | None:intergenic | 30.0% |
| CTGAAAATCAGGTATATATG+TGG | + | chr8_4:19328760-19328779 | Msa1317770:intron | 30.0% | |
| ATGGATAAAGAATAATCCCA+AGG | + | chr8_4:19329115-19329134 | Msa1317770:CDS | 30.0% | |
| CTAACTTTCAAGACTATCAT+GGG | + | chr8_4:19329183-19329202 | Msa1317770:CDS | 30.0% | |
| TTTGACAAAGCCAACTTAAA+AGG | + | chr8_4:19329248-19329267 | Msa1317770:intron | 30.0% | |
| ! | ATATATTGTTTCTCAGGCTA+TGG | + | chr8_4:19329339-19329358 | Msa1317770:intron | 30.0% |
| TTTATGTCAAAAGTAAGAGG+TGG | + | chr8_4:19329367-19329386 | Msa1317770:CDS | 30.0% | |
| GCATGCATATACAATGAATA+AGG | - | chr8_4:19329555-19329574 | None:intergenic | 30.0% | |
| TGCAATTACCACATAAATGT+GGG | - | chr8_4:19329908-19329927 | None:intergenic | 30.0% | |
| ACATTTATGTGGTAATTGCA+CGG | + | chr8_4:19329908-19329927 | Msa1317770:intron | 30.0% | |
| TTCTACTCATCTATTGTTGA+TGG | + | chr8_4:19330174-19330193 | Msa1317770:intron | 30.0% | |
| TCTACTCATCTATTGTTGAT+GGG | + | chr8_4:19330175-19330194 | Msa1317770:intron | 30.0% | |
| !! | GTTTTTCAAATTACGGTCAA+TGG | - | chr8_4:19330316-19330335 | None:intergenic | 30.0% |
| CAAAATCATAAGGACAATAG+AGG | + | chr8_4:19330335-19330354 | Msa1317770:intron | 30.0% | |
| GCTGAGATAGAAATATATAG+AGG | + | chr8_4:19330362-19330381 | Msa1317770:intron | 30.0% | |
| CTATTGATGTATCGTAAGAA+AGG | + | chr8_4:19330411-19330430 | Msa1317770:intron | 30.0% | |
| AACCATAAACATCTTTGTGT+AGG | + | chr8_4:19330486-19330505 | Msa1317770:intron | 30.0% | |
| ACCATAAACATCTTTGTGTA+GGG | + | chr8_4:19330487-19330506 | Msa1317770:intron | 30.0% | |
| ! | CTCATTTTCTCGTTTATACA+AGG | - | chr8_4:19330516-19330535 | None:intergenic | 30.0% |
| GAAAATGAGCAAGAAAAGTA+AGG | + | chr8_4:19330527-19330546 | Msa1317770:intron | 30.0% | |
| CTCAACCACTTATTTATGAT+CGG | - | chr8_4:19330621-19330640 | None:intergenic | 30.0% | |
| ! | TATTTTCCATGAGAGAATGT+TGG | + | chr8_4:19330798-19330817 | Msa1317770:intron | 30.0% |
| ! | TCATATGATGAGGCTTTTTA+GGG | - | chr8_4:19330943-19330962 | None:intergenic | 30.0% |
| ! | ATCATATGATGAGGCTTTTT+AGG | - | chr8_4:19330944-19330963 | None:intergenic | 30.0% |
| ! | TCTTGTTATCTTGAAGTTGT+TGG | - | chr8_4:19331198-19331217 | None:intergenic | 30.0% |
| GAAGACAACATCAATGTAAA+AGG | + | chr8_4:19331251-19331270 | Msa1317770:CDS | 30.0% | |
| AAATGATGTGAATGAGATCA+TGG | - | chr8_4:19331463-19331482 | None:intergenic | 30.0% | |
| AAGGCATGACAAATTTACAA+AGG | + | chr8_4:19331685-19331704 | Msa1317770:CDS | 30.0% | |
| AGGCATGACAAATTTACAAA+GGG | + | chr8_4:19331686-19331705 | Msa1317770:CDS | 30.0% | |
| CTTGAAAAAATTGCTTAAGG+AGG | + | chr8_4:19331769-19331788 | Msa1317770:CDS | 30.0% | |
| TTGGCATGTTATTATCAATG+AGG | + | chr8_4:19331817-19331836 | Msa1317770:CDS | 30.0% | |
| !! | TAATATTGATGATGAAACGG+TGG | + | chr8_4:19331910-19331929 | Msa1317770:CDS | 30.0% |
| GTGAAGCTAAGACTTAAATT+TGG | - | chr8_4:19332010-19332029 | None:intergenic | 30.0% | |
| GATATGATTATGTGATTGTG+AGG | - | chr8_4:19332064-19332083 | None:intergenic | 30.0% | |
| GAGTAAATTAGAATGTCCTA+TGG | + | chr8_4:19332120-19332139 | Msa1317770:three_prime_UTR | 30.0% | |
| TTGCAATCTTAGACAGAAGT+TGG | - | chr8_4:19328629-19328648 | None:intergenic | 35.0% | |
| ! | ATTTTCACCATGTTGGTCAT+TGG | - | chr8_4:19328652-19328671 | None:intergenic | 35.0% |
| ! | ATGGAGAATTTTCACCATGT+TGG | - | chr8_4:19328659-19328678 | None:intergenic | 35.0% |
| !!! | ATTCTCCATATTTTGATGGG+TGG | + | chr8_4:19328670-19328689 | Msa1317770:CDS | 35.0% |
| !!! | GGATTTTTTTTAGGGTGGAA+TGG | - | chr8_4:19328714-19328733 | None:intergenic | 35.0% |
| CACCCTAAAAAAAATCCTCA+GGG | + | chr8_4:19328717-19328736 | Msa1317770:CDS | 35.0% | |
| !!! | CACCCTGAGGATTTTTTTTA+GGG | - | chr8_4:19328722-19328741 | None:intergenic | 35.0% |
| !!! | ACACCCTGAGGATTTTTTTT+AGG | - | chr8_4:19328723-19328742 | None:intergenic | 35.0% |
| GCTTTGATCTGATTGAAGAA+TGG | + | chr8_4:19329096-19329115 | Msa1317770:CDS | 35.0% | |
| GCTAACTTTCAAGACTATCA+TGG | + | chr8_4:19329182-19329201 | Msa1317770:CDS | 35.0% | |
| TGTATGCAACCAAATTCAGA+TGG | - | chr8_4:19329655-19329674 | None:intergenic | 35.0% | |
| TTGGTTGCATACATGTCAAA+TGG | + | chr8_4:19329662-19329681 | Msa1317770:intron | 35.0% | |
| TGGTTGCATACATGTCAAAT+GGG | + | chr8_4:19329663-19329682 | Msa1317770:intron | 35.0% | |
| GTGGACAGAATTAACTTCAT+AGG | - | chr8_4:19329837-19329856 | None:intergenic | 35.0% | |
| GCAATTACCACATAAATGTG+GGG | - | chr8_4:19329907-19329926 | None:intergenic | 35.0% | |
| GTGCAATTACCACATAAATG+TGG | - | chr8_4:19329909-19329928 | None:intergenic | 35.0% | |
| ! | GTCATGAGGTAGTCTATTTT+GGG | - | chr8_4:19330267-19330286 | None:intergenic | 35.0% |
| ! | AGTCATGAGGTAGTCTATTT+TGG | - | chr8_4:19330268-19330287 | None:intergenic | 35.0% |
| ACCCTACACAAAGATGTTTA+TGG | - | chr8_4:19330491-19330510 | None:intergenic | 35.0% | |
| AAGAAAAGTAAGGAACACGA+TGG | + | chr8_4:19330537-19330556 | Msa1317770:intron | 35.0% | |
| ACCACTTATTTATGATCGGA+CGG | - | chr8_4:19330617-19330636 | None:intergenic | 35.0% | |
| GCCATAAAACATTGATCCAA+CGG | - | chr8_4:19330680-19330699 | None:intergenic | 35.0% | |
| ATTCATCCAACATTCTCTCA+TGG | - | chr8_4:19330807-19330826 | None:intergenic | 35.0% | |
| ! | GCTTGGCTGACATTAATTTT+TGG | - | chr8_4:19330890-19330909 | None:intergenic | 35.0% |
| ! | TGTCTAAGGTTGTACCTAAT+GGG | - | chr8_4:19331301-19331320 | None:intergenic | 35.0% |
| ! | TTGTCTAAGGTTGTACCTAA+TGG | - | chr8_4:19331302-19331321 | None:intergenic | 35.0% |
| CTTTAGTGTCTCTTTGTCTA+AGG | - | chr8_4:19331315-19331334 | None:intergenic | 35.0% | |
| TCACTAACACTTACATAGCT+TGG | - | chr8_4:19331416-19331435 | None:intergenic | 35.0% | |
| AATGATCAAGTGGTGAATTG+TGG | + | chr8_4:19331542-19331561 | Msa1317770:CDS | 35.0% | |
| !! | TTCTTTTAGAGAGTTCGAGA+AGG | + | chr8_4:19331654-19331673 | Msa1317770:CDS | 35.0% |
| GTTCGAGAAGGTTGTTAAAA+AGG | + | chr8_4:19331666-19331685 | Msa1317770:CDS | 35.0% | |
| ! | TAGTCGATTTCCAAGTAATG+CGG | + | chr8_4:19331727-19331746 | Msa1317770:CDS | 35.0% |
| TTGAAGAAGAGTTGAAGCTT+TGG | + | chr8_4:19331798-19331817 | Msa1317770:CDS | 35.0% | |
| !! | GTCTTCTTTTAATTGCTCTG+AGG | + | chr8_4:19331862-19331881 | Msa1317770:CDS | 35.0% |
| !!! | TCTTTTAATTGCTCTGAGGT+TGG | + | chr8_4:19331866-19331885 | Msa1317770:CDS | 35.0% |
| AGAAAGTTGAAGTCAAACGT+TGG | + | chr8_4:19331981-19332000 | Msa1317770:CDS | 35.0% | |
| TAAGTCTTAGCTTCACTTCA+AGG | + | chr8_4:19332014-19332033 | Msa1317770:CDS | 35.0% | |
| ACTATCGAAAAAACCTCACT+AGG | - | chr8_4:19332237-19332256 | None:intergenic | 35.0% | |
| ! | AGCTAATTTGTGTGTGAAGT+AGG | + | chr8_4:19332306-19332325 | Msa1317770:three_prime_UTR | 35.0% |
| ATTGCAACCAATGACCAACA+TGG | + | chr8_4:19328642-19328661 | Msa1317770:CDS | 40.0% | |
| GCTTTCCACCCATCAAAATA+TGG | - | chr8_4:19328678-19328697 | None:intergenic | 40.0% | |
| !!! | CCTGAGGATTTTTTTTAGGG+TGG | - | chr8_4:19328719-19328738 | None:intergenic | 40.0% |
| CCACCCTAAAAAAAATCCTC+AGG | + | chr8_4:19328716-19328735 | Msa1317770:CDS | 40.0% | |
| ! | AGAAGGAGTGTGTAAGTTCA+GGG | + | chr8_4:19329154-19329173 | Msa1317770:CDS | 40.0% |
| GTGCTTACACTTGTAAACTC+AGG | - | chr8_4:19329212-19329231 | None:intergenic | 40.0% | |
| TGTCAAAAGTAAGAGGTGGT+AGG | + | chr8_4:19329371-19329390 | Msa1317770:CDS | 40.0% | |
| GTCAAAAGTAAGAGGTGGTA+GGG | + | chr8_4:19329372-19329391 | Msa1317770:CDS | 40.0% | |
| CCACTCATCAATATACGGTT+AGG | - | chr8_4:19329409-19329428 | None:intergenic | 40.0% | |
| CCTAACCGTATATTGATGAG+TGG | + | chr8_4:19329406-19329425 | Msa1317770:CDS | 40.0% | |
| AACCGTATATTGATGAGTGG+AGG | + | chr8_4:19329409-19329428 | Msa1317770:CDS | 40.0% | |
| ACCGTATATTGATGAGTGGA+GGG | + | chr8_4:19329410-19329429 | Msa1317770:CDS | 40.0% | |
| ATGCATACCCTGGATAGAAA+GGG | - | chr8_4:19329504-19329523 | None:intergenic | 40.0% | |
| GTGATAAAATCTATGTGCCG+TGG | + | chr8_4:19329627-19329646 | Msa1317770:intron | 40.0% | |
| TTTGAGTCCCCACATTTATG+TGG | + | chr8_4:19329897-19329916 | Msa1317770:intron | 40.0% | |
| ACACGACTCAGACATAAGTT+AGG | + | chr8_4:19329966-19329985 | Msa1317770:intron | 40.0% | |
| ! | GAAACTCGACCTTTTGTTGA+TGG | - | chr8_4:19330039-19330058 | None:intergenic | 40.0% |
| ! | TAAGGAACACGATGGATTTC+AGG | + | chr8_4:19330545-19330564 | Msa1317770:intron | 40.0% |
| ! | GCCGTTGGATCAATGTTTTA+TGG | + | chr8_4:19330676-19330695 | Msa1317770:intron | 40.0% |
| GTTTCGGAAAGTGATTGAGT+TGG | + | chr8_4:19330912-19330931 | Msa1317770:intron | 40.0% | |
| TAGTTCTCCAACACAAGTCA+CGG | - | chr8_4:19331142-19331161 | None:intergenic | 40.0% | |
| ! | TGACTTGTGTTGGAGAACTA+AGG | + | chr8_4:19331142-19331161 | Msa1317770:CDS | 40.0% |
| AGTTGTTGGAGCTATCACAA+TGG | - | chr8_4:19331184-19331203 | None:intergenic | 40.0% | |
| ! | TAAGGTTGTACCTAATGGGT+TGG | - | chr8_4:19331297-19331316 | None:intergenic | 40.0% |
| TGATGAAATCTATGCAGCCA+CGG | + | chr8_4:19331379-19331398 | Msa1317770:CDS | 40.0% | |
| ATCAAGTGGTGAATTGTGGA+AGG | + | chr8_4:19331546-19331565 | Msa1317770:CDS | 40.0% | |
| GGAAGGAAAATGTCAAGCTT+TGG | + | chr8_4:19331563-19331582 | Msa1317770:CDS | 40.0% | |
| ATTTACAAAGGGACTCGAAG+AGG | + | chr8_4:19331697-19331716 | Msa1317770:CDS | 40.0% | |
| ! | AGTCGATTTCCAAGTAATGC+GGG | + | chr8_4:19331728-19331747 | Msa1317770:CDS | 40.0% |
| CAAAAAAGTCCCGCATTACT+TGG | - | chr8_4:19331740-19331759 | None:intergenic | 40.0% | |
| !!! | GTAATGCGGGACTTTTTTGT+TGG | + | chr8_4:19331741-19331760 | Msa1317770:CDS | 40.0% |
| GAGCAATTAAAAGAAGACCC+CGG | - | chr8_4:19331860-19331879 | None:intergenic | 40.0% | |
| !! | TTAATTGCTCTGAGGTTGGT+TGG | + | chr8_4:19331870-19331889 | Msa1317770:CDS | 40.0% |
| TTGTTCGAGCCACATGAATA+TGG | + | chr8_4:19332098-19332117 | Msa1317770:exon | 40.0% | |
| TCACAAATAGCTAGCTAGCT+AGG | - | chr8_4:19332201-19332220 | None:intergenic | 40.0% | |
| ! | TCGATAGTGTTCTAGCTACA+AGG | + | chr8_4:19332249-19332268 | Msa1317770:three_prime_UTR | 40.0% |
| CTACAAGGATCTTTGTGTGT+AGG | + | chr8_4:19332264-19332283 | Msa1317770:three_prime_UTR | 40.0% | |
| TCCTCAGGGTGTAATTCAGA+TGG | + | chr8_4:19328731-19328750 | Msa1317770:CDS | 45.0% | |
| CCTCAGGGTGTAATTCAGAT+GGG | + | chr8_4:19328732-19328751 | Msa1317770:CDS | 45.0% | |
| GATGGGTCTTGCTGAAAATC+AGG | + | chr8_4:19328749-19328768 | Msa1317770:CDS | 45.0% | |
| GGAGTGCAAATTGAAGCCTT+GGG | - | chr8_4:19329134-19329153 | None:intergenic | 45.0% | |
| TGGAGTGCAAATTGAAGCCT+TGG | - | chr8_4:19329135-19329154 | None:intergenic | 45.0% | |
| GCTTCAATTTGCACTCCAGA+AGG | + | chr8_4:19329137-19329156 | Msa1317770:CDS | 45.0% | |
| CTGAACTTACACACTCCTTC+TGG | - | chr8_4:19329155-19329174 | None:intergenic | 45.0% | |
| ! | CAGAAGGAGTGTGTAAGTTC+AGG | + | chr8_4:19329153-19329172 | Msa1317770:CDS | 45.0% |
| CCCCTCCACTCATCAATATA+CGG | - | chr8_4:19329414-19329433 | None:intergenic | 45.0% | |
| CCGTATATTGATGAGTGGAG+GGG | + | chr8_4:19329411-19329430 | Msa1317770:CDS | 45.0% | |
| ! | ATGTTTTGCTTGGCTGATCC+AGG | + | chr8_4:19329457-19329476 | Msa1317770:CDS | 45.0% |
| !! | GGAACTAGAAAAGCATCTCC+TGG | - | chr8_4:19329478-19329497 | None:intergenic | 45.0% |
| TTCCTACCCCTTTCTATCCA+GGG | + | chr8_4:19329494-19329513 | Msa1317770:CDS | 45.0% | |
| TGCATACCCTGGATAGAAAG+GGG | - | chr8_4:19329503-19329522 | None:intergenic | 45.0% | |
| CATGCATACCCTGGATAGAA+AGG | - | chr8_4:19329505-19329524 | None:intergenic | 45.0% | |
| ! | GAAAAGGTACATGCATACCC+TGG | - | chr8_4:19329514-19329533 | None:intergenic | 45.0% |
| ! | ACCAAATTCAGATGGTGCCA+CGG | - | chr8_4:19329647-19329666 | None:intergenic | 45.0% |
| CTACCTCATGACTCATAGCT+TGG | + | chr8_4:19330275-19330294 | Msa1317770:intron | 45.0% | |
| AGATTTCCTGCTGTAACAGC+AGG | + | chr8_4:19330572-19330591 | Msa1317770:intron | 45.0% | |
| TGTAACAGCAGGATGCTGTA+AGG | + | chr8_4:19330583-19330602 | Msa1317770:intron | 45.0% | |
| GCCGTCCGATCATAAATAAG+TGG | + | chr8_4:19330613-19330632 | Msa1317770:intron | 45.0% | |
| GTAGAACAAATCTGAGCCGT+TGG | + | chr8_4:19330661-19330680 | Msa1317770:intron | 45.0% | |
| !! | TCGGAAAGTGATTGAGTTGG+TGG | + | chr8_4:19330915-19330934 | Msa1317770:intron | 45.0% |
| TTGGAGCTATCACAATGGAC+AGG | - | chr8_4:19331179-19331198 | None:intergenic | 45.0% | |
| !! | TTGTACCTAATGGGTTGGAG+GGG | - | chr8_4:19331292-19331311 | None:intergenic | 45.0% |
| !! | GTTGTACCTAATGGGTTGGA+GGG | - | chr8_4:19331293-19331312 | None:intergenic | 45.0% |
| AACACTTACATAGCTTGGCG+AGG | - | chr8_4:19331411-19331430 | None:intergenic | 45.0% | |
| TCAAAAGACTTAGGGTTCCC+TGG | + | chr8_4:19331491-19331510 | Msa1317770:CDS | 45.0% | |
| !! | ACTTAGGGTTCCCTGGTTTT+AGG | + | chr8_4:19331498-19331517 | Msa1317770:CDS | 45.0% |
| !!! | CTTAGGGTTCCCTGGTTTTA+GGG | + | chr8_4:19331499-19331518 | Msa1317770:CDS | 45.0% |
| CTATCCCAACCCTAAAACCA+GGG | - | chr8_4:19331511-19331530 | None:intergenic | 45.0% | |
| ACTATCCCAACCCTAAAACC+AGG | - | chr8_4:19331512-19331531 | None:intergenic | 45.0% | |
| GGTGAAGCTTAATGTGTCAC+CGG | + | chr8_4:19331838-19331857 | Msa1317770:CDS | 45.0% | |
| GTGAAGCTTAATGTGTCACC+GGG | + | chr8_4:19331839-19331858 | Msa1317770:CDS | 45.0% | |
| TGAAGCTTAATGTGTCACCG+GGG | + | chr8_4:19331840-19331859 | Msa1317770:CDS | 45.0% | |
| !! | CTCTGAGGTTGGTTGGTTTA+GGG | + | chr8_4:19331877-19331896 | Msa1317770:CDS | 45.0% |
| CGGTGGAAATTGCATTGCAA+AGG | + | chr8_4:19331927-19331946 | Msa1317770:CDS | 45.0% | |
| GTCTTAGCTTCACTTCAAGG+AGG | + | chr8_4:19332017-19332036 | Msa1317770:CDS | 45.0% | |
| ATTCATGTGGCTCGAACAAG+TGG | - | chr8_4:19332097-19332116 | None:intergenic | 45.0% | |
| !! | AAATAAATTATTTAAATGAA+AGG | + | chr8_4:19330832-19330851 | Msa1317770:intron | 5.0% |
| !! | AATAAATTATTTAAATGAAA+GGG | + | chr8_4:19330833-19330852 | Msa1317770:intron | 5.0% |
| CCCATCTGAATTACACCCTG+AGG | - | chr8_4:19328735-19328754 | None:intergenic | 50.0% | |
| GTTCCTACCCCTTTCTATCC+AGG | + | chr8_4:19329493-19329512 | Msa1317770:CDS | 50.0% | |
| TACCCTGGATAGAAAGGGGT+AGG | - | chr8_4:19329499-19329518 | None:intergenic | 50.0% | |
| TCCACCTCTCCATCTAAGTG+AGG | + | chr8_4:19329852-19329871 | Msa1317770:intron | 50.0% | |
| ACCTCACTTAGATGGAGAGG+TGG | - | chr8_4:19329856-19329875 | None:intergenic | 50.0% | |
| GACACCTCACTTAGATGGAG+AGG | - | chr8_4:19329859-19329878 | None:intergenic | 50.0% | |
| AGGGTGACACCTCACTTAGA+TGG | - | chr8_4:19329864-19329883 | None:intergenic | 50.0% | |
| CCACCAAGCTATGAGTCATG+AGG | - | chr8_4:19330281-19330300 | None:intergenic | 50.0% | |
| CCTCATGACTCATAGCTTGG+TGG | + | chr8_4:19330278-19330297 | Msa1317770:intron | 50.0% | |
| AATGTCAGCCAAGCGCGTTT+CGG | + | chr8_4:19330896-19330915 | Msa1317770:intron | 50.0% | |
| ATCACTTTCCGAAACGCGCT+TGG | - | chr8_4:19330907-19330926 | None:intergenic | 50.0% | |
| ! | GATTCGTCCGTGACTTGTGT+TGG | + | chr8_4:19331132-19331151 | Msa1317770:intron | 50.0% |
| ACAAACCCCTCCAACCCATT+AGG | + | chr8_4:19331284-19331303 | Msa1317770:CDS | 50.0% | |
| !! | GGTTGTACCTAATGGGTTGG+AGG | - | chr8_4:19331294-19331313 | None:intergenic | 50.0% |
| !!! | GGTTCCCTGGTTTTAGGGTT+GGG | + | chr8_4:19331504-19331523 | Msa1317770:CDS | 50.0% |
| !! | GCTCTGAGGTTGGTTGGTTT+AGG | + | chr8_4:19331876-19331895 | Msa1317770:CDS | 50.0% |
| GCTCGAACAAGTGGTGAATG+AGG | - | chr8_4:19332088-19332107 | None:intergenic | 50.0% | |
| TTGATGAGTGGAGGGGCAAC+AGG | + | chr8_4:19329418-19329437 | Msa1317770:CDS | 55.0% | |
| TGATGAGTGGAGGGGCAACA+GGG | + | chr8_4:19329419-19329438 | Msa1317770:CDS | 55.0% | |
| GCCGTGGCACCATCTGAATT+TGG | + | chr8_4:19329643-19329662 | Msa1317770:intron | 55.0% | |
| CAGCATCCTGCTGTTACAGC+AGG | - | chr8_4:19330581-19330600 | None:intergenic | 55.0% | |
| ! | CAACACGCTGTTTCACGCTG+TGG | - | chr8_4:19330712-19330731 | None:intergenic | 55.0% |
| AGCGTGTTGCAGCTACAGCA+GGG | + | chr8_4:19330723-19330742 | Msa1317770:intron | 55.0% | |
| GCAGCTACAGCAGGGAATTC+AGG | + | chr8_4:19330731-19330750 | Msa1317770:intron | 55.0% | |
| !!! | GGGTTCCCTGGTTTTAGGGT+TGG | + | chr8_4:19331503-19331522 | Msa1317770:CDS | 55.0% |
| GATGAGTGGAGGGGCAACAG+GGG | + | chr8_4:19329420-19329439 | Msa1317770:CDS | 60.0% | |
| CAGCGTGTTGCAGCTACAGC+AGG | + | chr8_4:19330722-19330741 | Msa1317770:intron | 60.0% | |
| GCTTGGCGAGGTGAAAACCG+TGG | - | chr8_4:19331399-19331418 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 19328546 | 19332329 | 19328546 | ID=Msa1317770;Name=Msa1317770 |
| chr8_4 | mRNA | 19328546 | 19332329 | 19328546 | ID=Msa1317770-mRNA-1;Parent=Msa1317770;Name=Msa1317770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=57|1|1|1|1|1|4|215|480 |
| chr8_4 | exon | 19328546 | 19328770 | 19328546 | ID=Msa1317770-mRNA-1:exon:7121;Parent=Msa1317770-mRNA-1 |
| chr8_4 | exon | 19329092 | 19329223 | 19329092 | ID=Msa1317770-mRNA-1:exon:7122;Parent=Msa1317770-mRNA-1 |
| chr8_4 | exon | 19329355 | 19329515 | 19329355 | ID=Msa1317770-mRNA-1:exon:7123;Parent=Msa1317770-mRNA-1 |
| chr8_4 | exon | 19331133 | 19332329 | 19331133 | ID=Msa1317770-mRNA-1:exon:7124;Parent=Msa1317770-mRNA-1 |
| chr8_4 | five_prime_UTR | 19328546 | 19328602 | 19328546 | ID=Msa1317770-mRNA-1:five_prime_utr;Parent=Msa1317770-mRNA-1 |
| chr8_4 | CDS | 19328603 | 19328770 | 19328603 | ID=Msa1317770-mRNA-1:cds;Parent=Msa1317770-mRNA-1 |
| chr8_4 | CDS | 19329092 | 19329223 | 19329092 | ID=Msa1317770-mRNA-1:cds;Parent=Msa1317770-mRNA-1 |
| chr8_4 | CDS | 19329355 | 19329515 | 19329355 | ID=Msa1317770-mRNA-1:cds;Parent=Msa1317770-mRNA-1 |
| chr8_4 | CDS | 19331133 | 19332114 | 19331133 | ID=Msa1317770-mRNA-1:cds;Parent=Msa1317770-mRNA-1 |
| chr8_4 | three_prime_UTR | 19332115 | 19332329 | 19332115 | ID=Msa1317770-mRNA-1:three_prime_utr;Parent=Msa1317770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
