AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1390060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390060 MtrunA17_Chr8g0341741 97.445 274 7 0 1 274 1 274 0.0 555
Msa1390060 MtrunA17_Chr8g0341731 88.686 274 31 0 1 274 1 274 0.0 513
Msa1390060 MtrunA17_Chr8g0341701 84.672 274 41 1 1 274 1 273 5.10e-178 491
Msa1390060 MtrunA17_Chr8g0341721 83.955 268 38 2 1 264 1 267 1.92e-169 469
Msa1390060 MtrunA17_Chr2g0330511 72.119 269 73 2 4 272 3 269 8.67e-145 407
Msa1390060 MtrunA17_Chr2g0309111 70.632 269 78 1 4 272 47 314 9.83e-140 395
Msa1390060 MtrunA17_Chr2g0330491 57.721 272 110 2 5 272 4 274 4.33e-114 329
Msa1390060 MtrunA17_Chr8g0389271 57.806 237 96 4 5 239 2 236 9.91e-100 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390060 AT1G17710.1 65.074 272 86 4 3 266 5 275 2.72e-131 373
Msa1390060 AT1G73010.1 66.154 260 83 2 5 259 14 273 1.11e-126 362
Msa1390060 AT1G17710.2 59.565 230 84 4 45 266 15 243 1.01e-97 287
Msa1390060 AT4G29530.1 52.697 241 112 2 5 244 4 243 2.20e-91 271
Msa1390060 AT4G29530.2 51.010 198 95 2 48 244 36 232 3.16e-68 211

Find 61 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCAAGCCTAGAATTTA+TGG 0.189661 tig0021312:+6903 Msa1390060:intergenic
TCTGAAAGTGGTTTCAAAAT+TGG 0.194557 tig0021312:+8168 Msa1390060:intergenic
CACAAGAAATAGAAGCTAAA+TGG 0.195221 tig0021312:+8142 Msa1390060:intergenic
CAAAGACCCTTCACTTATTA+AGG 0.220496 tig0021312:-7093 Msa1390060:CDS
GCTATCATTGCAAATGTAAT+AGG 0.269161 tig0021312:-6878 Msa1390060:three_prime_UTR
TCCTTACCATGATTTCAATA+AGG 0.292313 tig0021312:-7535 Msa1390060:CDS
AATTGGTTGATTGATGAATT+AGG 0.292483 tig0021312:-7989 Msa1390060:CDS
ATTAAATCAGCACATGCATT+AGG 0.304848 tig0021312:-7696 Msa1390060:CDS
TCAGTTAGGCCATAAATTCT+AGG 0.325129 tig0021312:-6912 Msa1390060:exon
TTGATTGTGACAGTGATAAT+TGG 0.327162 tig0021312:-8006 Msa1390060:CDS
CTTATTAAGGCTGAAATTCA+TGG 0.328180 tig0021312:-7080 Msa1390060:CDS
ATATATACCTTGCACATGTT+TGG 0.342939 tig0021312:+7483 Msa1390060:intergenic
GGTATTATTCTGTGATGAAT+TGG 0.376960 tig0021312:+7723 Msa1390060:intergenic
ATGATGGAGTTTCATTCAAA+TGG 0.387824 tig0021312:-7786 Msa1390060:CDS
TTTGATTAACAAAATTATGA+TGG 0.399120 tig0021312:-7018 Msa1390060:CDS
GAACTGGACTAGATAGAGTT+TGG 0.404345 tig0021312:+6958 Msa1390060:intergenic
ATCTACCTTGGTGATGGTGC+TGG 0.412159 tig0021312:-7197 Msa1390060:CDS
AGCTTCTTCCCACAATGCCT+TGG 0.420250 tig0021312:-7946 Msa1390060:CDS
GCATGTGCTGATTTAATTGC+AGG 0.423440 tig0021312:+7702 Msa1390060:intergenic
CCTTCTTGATTAACATAACC+AGG 0.424126 tig0021312:+7573 Msa1390060:intergenic
TGATTGTGCTGGTTAATGAT+TGG 0.427338 tig0021312:-6787 Msa1390060:three_prime_UTR
TTTATAGTAAGAGAAGGTGT+TGG 0.434123 tig0021312:+8239 Msa1390060:intergenic
ACAAGAAATAGAAGCTAAAT+GGG 0.435519 tig0021312:+8143 Msa1390060:intergenic
GTGAAGCCTTATTGAAATCA+TGG 0.446007 tig0021312:+7529 Msa1390060:intergenic
CACACTGGAAAATTCTTCCT+TGG 0.458582 tig0021312:+7128 Msa1390060:intergenic
TTAAATCAGCACATGCATTA+GGG 0.464788 tig0021312:-7695 Msa1390060:CDS
TGCCTAAAGCTGTCTCAGTT+AGG 0.466799 tig0021312:-6926 Msa1390060:CDS
ACAGAGTTCCAAGGCATTGT+GGG 0.466896 tig0021312:+7938 Msa1390060:intergenic
TAAACGTTCCTTGATTGTGC+TGG 0.473070 tig0021312:-6798 Msa1390060:three_prime_UTR
TTAGGCAAAGATACAAGAAC+TGG 0.474583 tig0021312:+6942 Msa1390060:intergenic
ATCACTGTCACAATCAATGA+TGG 0.486684 tig0021312:+8012 Msa1390060:intergenic
CTTTCTCTTAGCCTCAAGCT+AGG 0.488657 tig0021312:+7164 Msa1390060:intergenic
TTATAGTAAGAGAAGGTGTT+GGG 0.491204 tig0021312:+8240 Msa1390060:intergenic
CCTGGTTATGTTAATCAAGA+AGG 0.499879 tig0021312:-7573 Msa1390060:CDS
TATACCTTGCACATGTTTGG+AGG 0.502608 tig0021312:+7486 Msa1390060:intergenic
GGCCTAACTGAGACAGCTTT+AGG 0.505096 tig0021312:+6924 Msa1390060:intergenic
TCAGAGATTAACACTAATCC+TGG 0.509786 tig0021312:-7591 Msa1390060:CDS
GAAATTCATGGTTGGTGTGA+TGG 0.515965 tig0021312:-7068 Msa1390060:CDS
ATTATAGGACAAGATGATGA+TGG 0.517951 tig0021312:-7802 Msa1390060:intron
ATCATTAACCAGCACAATCA+AGG 0.530531 tig0021312:+6790 Msa1390060:intergenic
TAGGTATTTATAGTAAGAGA+AGG 0.550239 tig0021312:+8233 Msa1390060:intergenic
GATTAACAAAATTATGATGG+AGG 0.550625 tig0021312:-7015 Msa1390060:CDS
GACAGAGTTCCAAGGCATTG+TGG 0.554836 tig0021312:+7937 Msa1390060:intergenic
TTGGTGTGATGGAGAAGAGT+TGG 0.555513 tig0021312:-7057 Msa1390060:CDS
AGGTTTATCTACCTTGGTGA+TGG 0.556828 tig0021312:-7203 Msa1390060:CDS
ATGCATTAGGGTGTGACTTG+AGG 0.557204 tig0021312:-7683 Msa1390060:CDS
ATTTCAGCCTTAATAAGTGA+AGG 0.559691 tig0021312:+7086 Msa1390060:intergenic
TTTCTCTTAGCCTCAAGCTA+GGG 0.559791 tig0021312:+7165 Msa1390060:intergenic
GGTTTATTAAAGTTAATCAA+AGG 0.562569 tig0021312:+6843 Msa1390060:intergenic
GCTAAATGGGTATCTGAAAG+TGG 0.567691 tig0021312:+8156 Msa1390060:intergenic
TTAAGGCTGAAATTCATGGT+TGG 0.568918 tig0021312:-7076 Msa1390060:CDS
GCCTTATTGAAATCATGGTA+AGG 0.574263 tig0021312:+7534 Msa1390060:intergenic
TTTCAGCCTTAATAAGTGAA+GGG 0.593746 tig0021312:+7087 Msa1390060:intergenic
GAGACTATTGCCCTAGCTTG+AGG 0.597383 tig0021312:-7175 Msa1390060:CDS
ATACCTTGCACATGTTTGGA+GGG 0.605181 tig0021312:+7487 Msa1390060:intergenic
GATTTCAATAAGGCTTCACA+TGG 0.605748 tig0021312:-7525 Msa1390060:CDS
CTGCCCTCCAAACATGTGCA+AGG 0.634726 tig0021312:-7490 Msa1390060:intron
AATGCCTTGGAACTCTGTCA+TGG 0.634751 tig0021312:-7933 Msa1390060:intron
TTGCATATCAAATCCCACAC+TGG 0.639282 tig0021312:+7113 Msa1390050:intergenic
CATACCATGACAGAGTTCCA+AGG 0.665251 tig0021312:+7929 Msa1390050:intergenic
AGTCTCCAGCACCATCACCA+AGG 0.694728 tig0021312:+7192 Msa1390050:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAATCATTATTTC+AGG - tig0021312:7743-7762 Msa1390060:CDS 10.0%
!!! TTTTTAAAATCATTATTTCA+GGG - tig0021312:7744-7763 Msa1390060:CDS 10.0%
!!! TTTTTTAAAATCATTATTTC+AGG - tig0021312:7743-7762 Msa1390060:CDS 10.0%
!!! TTTTTAAAATCATTATTTCA+GGG - tig0021312:7744-7763 Msa1390060:CDS 10.0%
!!! TAATATATGATTAACTTGTT+TGG - tig0021312:7187-7206 Msa1390060:CDS 15.0%
!! ATTAAAGAATAATTTGATGT+AGG - tig0021312:7616-7635 Msa1390060:CDS 15.0%
!! TTTGATTAACAAAATTATGA+TGG - tig0021312:8001-8020 Msa1390060:CDS 15.0%
!!! TAATATATGATTAACTTGTT+TGG - tig0021312:7187-7206 Msa1390060:CDS 15.0%
!! ATTAAAGAATAATTTGATGT+AGG - tig0021312:7616-7635 Msa1390060:CDS 15.0%
!! TTTGATTAACAAAATTATGA+TGG - tig0021312:8001-8020 Msa1390060:CDS 15.0%
!!! TGCAAGGTATATATTTTTTT+GGG - tig0021312:7545-7564 Msa1390060:CDS 20.0%
!! GGTTTATTAAAGTTAATCAA+AGG + tig0021312:8179-8198 Msa1390060:intergenic 20.0%
!!! TGCAAGGTATATATTTTTTT+GGG - tig0021312:7545-7564 Msa1390060:CDS 20.0%
!! GGTTTATTAAAGTTAATCAA+AGG + tig0021312:8179-8198 Msa1390060:intergenic 20.0%
! TAGGTATTTATAGTAAGAGA+AGG + tig0021312:6789-6808 Msa1288000:intergenic 25.0%
!!! TTCAAAATTGGTTTTTTGCT+TGG + tig0021312:6842-6861 Msa1288000:intergenic 25.0%
! ACAAGAAATAGAAGCTAAAT+GGG + tig0021312:6879-6898 Msa1288000:intergenic 25.0%
!!! TGAACTAGTTTTTTCTTTCT+GGG - tig0021312:6898-6917 Msa1390060:three_prime_UTR 25.0%
! AATTGGTTGATTGATGAATT+AGG - tig0021312:7030-7049 Msa1390060:CDS 25.0%
!!! ATGATTAACTTGTTTGGTTT+TGG - tig0021312:7193-7212 Msa1390060:CDS 25.0%
!!! TTGTTTGGTTTTGGAATTAT+AGG - tig0021312:7202-7221 Msa1390060:CDS 25.0%
!!! AACTTTTTCAATCTCTTCAA+TGG + tig0021312:7264-7283 Msa1390060:intergenic 25.0%
!!! GTGCAAGGTATATATTTTTT+TGG - tig0021312:7544-7563 Msa1390060:CDS 25.0%
! TATATTGGCATAAAATCTAG+TGG + tig0021312:7595-7614 Msa1390060:intergenic 25.0%
! TCTTCATGAATTCAAACTAA+TGG + tig0021312:7643-7662 Msa1390060:intergenic 25.0%
!! CCTCTTCAAAAATTGAATTT+TGG + tig0021312:7788-7807 Msa1390060:intergenic 25.0%
!!! CCAAAATTCAATTTTTGAAG+AGG - tig0021312:7785-7804 Msa1390060:CDS 25.0%
!!! TTTTTGAAGAGGATAAAAAG+AGG - tig0021312:7796-7815 Msa1390060:CDS 25.0%
! GATTAACAAAATTATGATGG+AGG - tig0021312:8004-8023 Msa1390060:CDS 25.0%
!! ACCTTTTCTTGTACTAAAAT+TGG - tig0021312:8196-8215 Msa1390060:five_prime_UTR 25.0%
!!! ACCAATTTTAGTACAAGAAA+AGG + tig0021312:8200-8219 Msa1390060:intergenic 25.0%
!!! AATCACGTTTTTTTTTCCTT+TGG - tig0021312:8259-8278 Msa1390060:five_prime_UTR 25.0%
! TAGGTATTTATAGTAAGAGA+AGG + tig0021312:6789-6808 Msa1390060:intergenic 25.0%
!!! TTCAAAATTGGTTTTTTGCT+TGG + tig0021312:6842-6861 Msa1390060:intergenic 25.0%
! ACAAGAAATAGAAGCTAAAT+GGG + tig0021312:6879-6898 Msa1390060:intergenic 25.0%
!!! TGAACTAGTTTTTTCTTTCT+GGG - tig0021312:6898-6917 Msa1390060:three_prime_UTR 25.0%
! AATTGGTTGATTGATGAATT+AGG - tig0021312:7030-7049 Msa1390060:CDS 25.0%
!!! ATGATTAACTTGTTTGGTTT+TGG - tig0021312:7193-7212 Msa1390060:CDS 25.0%
!!! TTGTTTGGTTTTGGAATTAT+AGG - tig0021312:7202-7221 Msa1390060:CDS 25.0%
!!! AACTTTTTCAATCTCTTCAA+TGG + tig0021312:7264-7283 Msa1390060:intergenic 25.0%
!!! GTGCAAGGTATATATTTTTT+TGG - tig0021312:7544-7563 Msa1390060:CDS 25.0%
! TATATTGGCATAAAATCTAG+TGG + tig0021312:7595-7614 Msa1390060:intergenic 25.0%
! TCTTCATGAATTCAAACTAA+TGG + tig0021312:7643-7662 Msa1390060:intergenic 25.0%
!! CCTCTTCAAAAATTGAATTT+TGG + tig0021312:7788-7807 Msa1390060:intergenic 25.0%
!!! CCAAAATTCAATTTTTGAAG+AGG - tig0021312:7785-7804 Msa1390060:CDS 25.0%
!!! TTTTTGAAGAGGATAAAAAG+AGG - tig0021312:7796-7815 Msa1390060:CDS 25.0%
! GATTAACAAAATTATGATGG+AGG - tig0021312:8004-8023 Msa1390060:CDS 25.0%
!! ACCTTTTCTTGTACTAAAAT+TGG - tig0021312:8196-8215 Msa1390060:five_prime_UTR 25.0%
!!! ACCAATTTTAGTACAAGAAA+AGG + tig0021312:8200-8219 Msa1390060:intergenic 25.0%
!! TTATAGTAAGAGAAGGTGTT+GGG + tig0021312:6782-6801 Msa1288000:intergenic 30.0%
! TTTATAGTAAGAGAAGGTGT+TGG + tig0021312:6783-6802 Msa1288000:intergenic 30.0%
TCTGAAAGTGGTTTCAAAAT+TGG + tig0021312:6854-6873 Msa1288000:intergenic 30.0%
CACAAGAAATAGAAGCTAAA+TGG + tig0021312:6880-6899 Msa1288000:intergenic 30.0%
!!! GTGAACTAGTTTTTTCTTTC+TGG - tig0021312:6897-6916 Msa1390060:three_prime_UTR 30.0%
!!! TAGTCATTTTTCTCTTTGAG+AGG + tig0021312:6954-6973 Msa1390060:intergenic 30.0%
TTGATTGTGACAGTGATAAT+TGG - tig0021312:7013-7032 Msa1390060:CDS 30.0%
ATTATAGGACAAGATGATGA+TGG - tig0021312:7217-7236 Msa1390060:CDS 30.0%
! ATGATGGAGTTTCATTCAAA+TGG - tig0021312:7233-7252 Msa1390060:CDS 30.0%
AGATTGAAAAAGTTCTGCAA+AGG - tig0021312:7270-7289 Msa1390060:intron 30.0%
GGTATTATTCTGTGATGAAT+TGG + tig0021312:7299-7318 Msa1390060:intergenic 30.0%
ATTAAATCAGCACATGCATT+AGG - tig0021312:7323-7342 Msa1390060:intron 30.0%
TTAAATCAGCACATGCATTA+GGG - tig0021312:7324-7343 Msa1390060:intron 30.0%
!!! TGAGACTATTTTGAAGCATT+TGG - tig0021312:7388-7407 Msa1390060:intron 30.0%
!!! GAGACTATTTTGAAGCATTT+GGG - tig0021312:7389-7408 Msa1390060:intron 30.0%
TCCTTACCATGATTTCAATA+AGG - tig0021312:7484-7503 Msa1390060:intron 30.0%
ATATATACCTTGCACATGTT+TGG + tig0021312:7539-7558 Msa1390060:intergenic 30.0%
AAAAAGAGGTTTATCTACCT+TGG - tig0021312:7810-7829 Msa1390060:intron 30.0%
TTTCAGCCTTAATAAGTGAA+GGG + tig0021312:7935-7954 Msa1390060:intergenic 30.0%
ATTTCAGCCTTAATAAGTGA+AGG + tig0021312:7936-7955 Msa1390060:intergenic 30.0%
CTTATTAAGGCTGAAATTCA+TGG - tig0021312:7939-7958 Msa1390060:CDS 30.0%
GCTATCATTGCAAATGTAAT+AGG - tig0021312:8141-8160 Msa1390060:five_prime_UTR 30.0%
!! TTATAGTAAGAGAAGGTGTT+GGG + tig0021312:6782-6801 Msa1390060:intergenic 30.0%
! TTTATAGTAAGAGAAGGTGT+TGG + tig0021312:6783-6802 Msa1390060:intergenic 30.0%
TCTGAAAGTGGTTTCAAAAT+TGG + tig0021312:6854-6873 Msa1390060:intergenic 30.0%
CACAAGAAATAGAAGCTAAA+TGG + tig0021312:6880-6899 Msa1390060:intergenic 30.0%
!!! GTGAACTAGTTTTTTCTTTC+TGG - tig0021312:6897-6916 Msa1390060:three_prime_UTR 30.0%
!!! TAGTCATTTTTCTCTTTGAG+AGG + tig0021312:6954-6973 Msa1390060:intergenic 30.0%
TTGATTGTGACAGTGATAAT+TGG - tig0021312:7013-7032 Msa1390060:CDS 30.0%
ATTATAGGACAAGATGATGA+TGG - tig0021312:7217-7236 Msa1390060:CDS 30.0%
! ATGATGGAGTTTCATTCAAA+TGG - tig0021312:7233-7252 Msa1390060:CDS 30.0%
AGATTGAAAAAGTTCTGCAA+AGG - tig0021312:7270-7289 Msa1390060:intron 30.0%
GGTATTATTCTGTGATGAAT+TGG + tig0021312:7299-7318 Msa1390060:intergenic 30.0%
ATTAAATCAGCACATGCATT+AGG - tig0021312:7323-7342 Msa1390060:intron 30.0%
TTAAATCAGCACATGCATTA+GGG - tig0021312:7324-7343 Msa1390060:intron 30.0%
!!! TGAGACTATTTTGAAGCATT+TGG - tig0021312:7388-7407 Msa1390060:intron 30.0%
!!! GAGACTATTTTGAAGCATTT+GGG - tig0021312:7389-7408 Msa1390060:intron 30.0%
TCCTTACCATGATTTCAATA+AGG - tig0021312:7484-7503 Msa1390060:intron 30.0%
ATATATACCTTGCACATGTT+TGG + tig0021312:7539-7558 Msa1390060:intergenic 30.0%
AAAAAGAGGTTTATCTACCT+TGG - tig0021312:7810-7829 Msa1390060:intron 30.0%
TTTCAGCCTTAATAAGTGAA+GGG + tig0021312:7935-7954 Msa1390060:intergenic 30.0%
ATTTCAGCCTTAATAAGTGA+AGG + tig0021312:7936-7955 Msa1390060:intergenic 30.0%
CTTATTAAGGCTGAAATTCA+TGG - tig0021312:7939-7958 Msa1390060:CDS 30.0%
GCTATCATTGCAAATGTAAT+AGG - tig0021312:8141-8160 Msa1390060:five_prime_UTR 30.0%
ATCACTGTCACAATCAATGA+TGG + tig0021312:7010-7029 Msa1390060:intergenic 35.0%
AACAAAACAGAGCACATGAA+TGG + tig0021312:7125-7144 Msa1390060:intergenic 35.0%
TCAGAGATTAACACTAATCC+TGG - tig0021312:7428-7447 Msa1390060:intron 35.0%
CCTTCTTGATTAACATAACC+AGG + tig0021312:7449-7468 Msa1390060:intergenic 35.0%
CCTGGTTATGTTAATCAAGA+AGG - tig0021312:7446-7465 Msa1390060:intron 35.0%
! GCCTTATTGAAATCATGGTA+AGG + tig0021312:7488-7507 Msa1390060:intergenic 35.0%
!! GTGAAGCCTTATTGAAATCA+TGG + tig0021312:7493-7512 Msa1390060:intergenic 35.0%
GATTTCAATAAGGCTTCACA+TGG - tig0021312:7494-7513 Msa1390060:CDS 35.0%
! AAAGAGATTTTGTGATGCCA+AGG - tig0021312:7874-7893 Msa1390060:intron 35.0%
! AAGGAAGAATTTTCCAGTGT+GGG - tig0021312:7893-7912 Msa1390060:intron 35.0%
CAAAGACCCTTCACTTATTA+AGG - tig0021312:7926-7945 Msa1390060:intron 35.0%
TTAAGGCTGAAATTCATGGT+TGG - tig0021312:7943-7962 Msa1390060:CDS 35.0%
TTAGGCAAAGATACAAGAAC+TGG + tig0021312:8080-8099 Msa1390060:intergenic 35.0%
TCAGTTAGGCCATAAATTCT+AGG - tig0021312:8107-8126 Msa1390060:five_prime_UTR 35.0%
ACTAGCAAGCCTAGAATTTA+TGG + tig0021312:8119-8138 Msa1390060:intergenic 35.0%
ATCATTAACCAGCACAATCA+AGG + tig0021312:8232-8251 Msa1390060:intergenic 35.0%
!! TGATTGTGCTGGTTAATGAT+TGG - tig0021312:8232-8251 Msa1390060:five_prime_UTR 35.0%
ATCACTGTCACAATCAATGA+TGG + tig0021312:7010-7029 Msa1390060:intergenic 35.0%
AACAAAACAGAGCACATGAA+TGG + tig0021312:7125-7144 Msa1390060:intergenic 35.0%
TCAGAGATTAACACTAATCC+TGG - tig0021312:7428-7447 Msa1390060:intron 35.0%
CCTTCTTGATTAACATAACC+AGG + tig0021312:7449-7468 Msa1390060:intergenic 35.0%
CCTGGTTATGTTAATCAAGA+AGG - tig0021312:7446-7465 Msa1390060:intron 35.0%
! GCCTTATTGAAATCATGGTA+AGG + tig0021312:7488-7507 Msa1390060:intergenic 35.0%
!! GTGAAGCCTTATTGAAATCA+TGG + tig0021312:7493-7512 Msa1390060:intergenic 35.0%
GATTTCAATAAGGCTTCACA+TGG - tig0021312:7494-7513 Msa1390060:CDS 35.0%
! AAAGAGATTTTGTGATGCCA+AGG - tig0021312:7874-7893 Msa1390060:intron 35.0%
! AAGGAAGAATTTTCCAGTGT+GGG - tig0021312:7893-7912 Msa1390060:intron 35.0%
CAAAGACCCTTCACTTATTA+AGG - tig0021312:7926-7945 Msa1390060:intron 35.0%
TTAAGGCTGAAATTCATGGT+TGG - tig0021312:7943-7962 Msa1390060:CDS 35.0%
TTAGGCAAAGATACAAGAAC+TGG + tig0021312:8080-8099 Msa1390060:intergenic 35.0%
TCAGTTAGGCCATAAATTCT+AGG - tig0021312:8107-8126 Msa1390060:five_prime_UTR 35.0%
ACTAGCAAGCCTAGAATTTA+TGG + tig0021312:8119-8138 Msa1390060:intergenic 35.0%
ATCATTAACCAGCACAATCA+AGG + tig0021312:8232-8251 Msa1390060:intergenic 35.0%
!! TGATTGTGCTGGTTAATGAT+TGG - tig0021312:8232-8251 Msa1390060:five_prime_UTR 35.0%
GCTAAATGGGTATCTGAAAG+TGG + tig0021312:6866-6885 Msa1288000:intergenic 40.0%
!! GCATGTGCTGATTTAATTGC+AGG + tig0021312:7320-7339 Msa1390060:intergenic 40.0%
ATACCTTGCACATGTTTGGA+GGG + tig0021312:7535-7554 Msa1390060:intergenic 40.0%
TATACCTTGCACATGTTTGG+AGG + tig0021312:7536-7555 Msa1390060:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG - tig0021312:7816-7835 Msa1390060:intron 40.0%
TTTCTCTTAGCCTCAAGCTA+GGG + tig0021312:7857-7876 Msa1390060:intergenic 40.0%
CACACTGGAAAATTCTTCCT+TGG + tig0021312:7894-7913 Msa1390060:intergenic 40.0%
! CAAGGAAGAATTTTCCAGTG+TGG - tig0021312:7892-7911 Msa1390060:intron 40.0%
TTGCATATCAAATCCCACAC+TGG + tig0021312:7909-7928 Msa1390060:intergenic 40.0%
! GAAATTCATGGTTGGTGTGA+TGG - tig0021312:7951-7970 Msa1390060:CDS 40.0%
! GAACTGGACTAGATAGAGTT+TGG + tig0021312:8064-8083 Msa1390060:intergenic 40.0%
TAAACGTTCCTTGATTGTGC+TGG - tig0021312:8221-8240 Msa1390060:five_prime_UTR 40.0%
GCTAAATGGGTATCTGAAAG+TGG + tig0021312:6866-6885 Msa1390060:intergenic 40.0%
!! GCATGTGCTGATTTAATTGC+AGG + tig0021312:7320-7339 Msa1390060:intergenic 40.0%
ATACCTTGCACATGTTTGGA+GGG + tig0021312:7535-7554 Msa1390060:intergenic 40.0%
TATACCTTGCACATGTTTGG+AGG + tig0021312:7536-7555 Msa1390060:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG - tig0021312:7816-7835 Msa1390060:intron 40.0%
TTTCTCTTAGCCTCAAGCTA+GGG + tig0021312:7857-7876 Msa1390060:intergenic 40.0%
CACACTGGAAAATTCTTCCT+TGG + tig0021312:7894-7913 Msa1390060:intergenic 40.0%
! CAAGGAAGAATTTTCCAGTG+TGG - tig0021312:7892-7911 Msa1390060:intron 40.0%
TTGCATATCAAATCCCACAC+TGG + tig0021312:7909-7928 Msa1390060:intergenic 40.0%
! GAAATTCATGGTTGGTGTGA+TGG - tig0021312:7951-7970 Msa1390060:CDS 40.0%
! GAACTGGACTAGATAGAGTT+TGG + tig0021312:8064-8083 Msa1390060:intergenic 40.0%
TAAACGTTCCTTGATTGTGC+TGG - tig0021312:8221-8240 Msa1390060:five_prime_UTR 40.0%
!! ACAGAGTTCCAAGGCATTGT+GGG + tig0021312:7084-7103 Msa1390060:intergenic 45.0%
AATGCCTTGGAACTCTGTCA+TGG - tig0021312:7086-7105 Msa1390060:CDS 45.0%
CATACCATGACAGAGTTCCA+AGG + tig0021312:7093-7112 Msa1390060:intergenic 45.0%
ATGCATTAGGGTGTGACTTG+AGG - tig0021312:7336-7355 Msa1390060:intron 45.0%
CTTTCTCTTAGCCTCAAGCT+AGG + tig0021312:7858-7877 Msa1390060:intergenic 45.0%
! TTGGTGTGATGGAGAAGAGT+TGG - tig0021312:7962-7981 Msa1390060:CDS 45.0%
TGCCTAAAGCTGTCTCAGTT+AGG - tig0021312:8093-8112 Msa1390060:five_prime_UTR 45.0%
!! ACAGAGTTCCAAGGCATTGT+GGG + tig0021312:7084-7103 Msa1390060:intergenic 45.0%
AATGCCTTGGAACTCTGTCA+TGG - tig0021312:7086-7105 Msa1390060:CDS 45.0%
CATACCATGACAGAGTTCCA+AGG + tig0021312:7093-7112 Msa1390060:intergenic 45.0%
ATGCATTAGGGTGTGACTTG+AGG - tig0021312:7336-7355 Msa1390060:intron 45.0%
CTTTCTCTTAGCCTCAAGCT+AGG + tig0021312:7858-7877 Msa1390060:intergenic 45.0%
! TTGGTGTGATGGAGAAGAGT+TGG - tig0021312:7962-7981 Msa1390060:CDS 45.0%
TGCCTAAAGCTGTCTCAGTT+AGG - tig0021312:8093-8112 Msa1390060:five_prime_UTR 45.0%
!!! AATTATTCTTTAATTTATAT+TGG + tig0021312:7610-7629 Msa1390060:intergenic 5.0%
!!! AATTATTCTTTAATTTATAT+TGG + tig0021312:7610-7629 Msa1390060:intergenic 5.0%
AGAGAGAGAGAGAGAGAGGT+AGG + tig0021312:6808-6827 Msa1288000:intergenic 50.0%
ACAGAGAGAGAGAGAGAGAG+AGG + tig0021312:6812-6831 Msa1288000:intergenic 50.0%
AGCTTCTTCCCACAATGCCT+TGG - tig0021312:7073-7092 Msa1390060:CDS 50.0%
!! GACAGAGTTCCAAGGCATTG+TGG + tig0021312:7085-7104 Msa1390060:intergenic 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG - tig0021312:7822-7841 Msa1390060:intron 50.0%
GAGACTATTGCCCTAGCTTG+AGG - tig0021312:7844-7863 Msa1390060:intron 50.0%
GGCCTAACTGAGACAGCTTT+AGG + tig0021312:8098-8117 Msa1390060:intergenic 50.0%
AGAGAGAGAGAGAGAGAGGT+AGG + tig0021312:6808-6827 Msa1390060:intergenic 50.0%
ACAGAGAGAGAGAGAGAGAG+AGG + tig0021312:6812-6831 Msa1390060:intergenic 50.0%
AGCTTCTTCCCACAATGCCT+TGG - tig0021312:7073-7092 Msa1390060:CDS 50.0%
!! GACAGAGTTCCAAGGCATTG+TGG + tig0021312:7085-7104 Msa1390060:intergenic 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG - tig0021312:7822-7841 Msa1390060:intron 50.0%
GAGACTATTGCCCTAGCTTG+AGG - tig0021312:7844-7863 Msa1390060:intron 50.0%
GGCCTAACTGAGACAGCTTT+AGG + tig0021312:8098-8117 Msa1390060:intergenic 50.0%
CTGCCCTCCAAACATGTGCA+AGG - tig0021312:7529-7548 Msa1390060:CDS 55.0%
AGTCTCCAGCACCATCACCA+AGG + tig0021312:7830-7849 Msa1390060:intergenic 55.0%
CTGCCCTCCAAACATGTGCA+AGG - tig0021312:7529-7548 Msa1390060:CDS 55.0%
AGTCTCCAGCACCATCACCA+AGG + tig0021312:7830-7849 Msa1390060:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0021312 gene 6763 8278 6763 ID=Msa1390060;Name=Msa1390060
tig0021312 mRNA 6763 8278 6763 ID=Msa1390060-mRNA-1;Parent=Msa1390060;Name=Msa1390060-mRNA-1;_AED=0.05;_eAED=0.05;_QI=204|1|1|1|1|1|3|157|274
tig0021312 exon 6763 7276 6763 ID=Msa1390060-mRNA-1:exon:11981;Parent=Msa1390060-mRNA-1
tig0021312 exon 7491 7817 7491 ID=Msa1390060-mRNA-1:exon:11980;Parent=Msa1390060-mRNA-1
tig0021312 exon 7934 8278 7934 ID=Msa1390060-mRNA-1:exon:11979;Parent=Msa1390060-mRNA-1
tig0021312 five_prime_UTR 8075 8278 8075 ID=Msa1390060-mRNA-1:five_prime_utr;Parent=Msa1390060-mRNA-1
tig0021312 CDS 7934 8074 7934 ID=Msa1390060-mRNA-1:cds;Parent=Msa1390060-mRNA-1
tig0021312 CDS 7491 7817 7491 ID=Msa1390060-mRNA-1:cds;Parent=Msa1390060-mRNA-1
tig0021312 CDS 6920 7276 6920 ID=Msa1390060-mRNA-1:cds;Parent=Msa1390060-mRNA-1
tig0021312 three_prime_UTR 6763 6919 6763 ID=Msa1390060-mRNA-1:three_prime_utr;Parent=Msa1390060-mRNA-1
Gene Sequence

>Msa1390060

ATGACTAATAACATTGTTATTGTTTTCGACTTTGACAAAACCATCATTGATTGTGACAGTGATAATTGGTTGATTGATGAATTAGGTTTCACTGATTTGTTTAATCAGCTTCTTCCCACAATGCCTTGGAACTCTGTCATGGACAAGATGATGATGGAGTTTCATTCAAATGGAATAACCATTGAAGAGATTGAAAAAGTTCTGCAAAGGATTCCAATTCATCACAGAATAATACCTGCAATTAAATCAGCACATGCATTAGGGTGTGACTTGAGGATTGTGAGTGATGCTAATATGTTTTACATTGAGACTATTTTGAAGCATTTGGGAATTAGTGAATACTTCTCAGAGATTAACACTAATCCTGGTTATGTTAATCAAGAAGGAAGAGTTAGAATTTTTCCTTACCATGATTTCAATAAGGCTTCACATGGTTGCAACAATGTCTGCCCTCCAAACATGTGCAAGGGTTTAATCATTGATAAAATCCAAAATTCAATTTTTGAAGAGGATAAAAAGAGGTTTATCTACCTTGGTGATGGTGCTGGAGACTATTGCCCTAGCTTGAGGCTAAGAGAAAGAGATTTTGTGATGCCAAGGAAGAATTTTCCAGTGTGGGATTTGATATGCAAAGACCCTTCACTTATTAAGGCTGAAATTCATGGTTGGTGTGATGGAGAAGAGTTGGAACAAGTTTTGCTGAATTTGATTAACAAAATTATGATGGAGGAACATGTTCAACTTATTTCTTCTGATTGCAAGCTCCAAACTCTATCTAGTCCAGTTCTTGTATCTTTGCCTAAAGCTGTCTCAGTTAGGCCATAA
Protein sequence

>Msa1390060

MTNNIVIVFDFDKTIIDCDSDNWLIDELGFTDLFNQLLPTMPWNSVMDKMMMEFHSNGITIEEIEKVLQRIPIHHRIIPAIKSAHALGCDLRIVSDANMFYIETILKHLGISEYFSEINTNPGYVNQEGRVRIFPYHDFNKASHGCNNVCPPNMCKGLIIDKIQNSIFEEDKKRFIYLGDGAGDYCPSLRLRERDFVMPRKNFPVWDLICKDPSLIKAEIHGWCDGEELEQVLLNLINKIMMEEHVQLISSDCKLQTLSSPVLVSLPKAVSVRP*