Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180420 | XP_003627081.1 | 91.751 | 594 | 47 | 2 | 1 | 592 | 1 | 594 | 0.0 | 1086 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180420 | sp|Q9LI74|CHUP1_ARATH | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 1.99e-62 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1180420 | Msa1274730 | 0.823059 | 1.698535e-53 | -8.615850e-47 |
| Msa1180420 | Msa1312740 | 0.843594 | 1.272963e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180420 | MtrunA17_Chr8g0340991 | 91.751 | 594 | 47 | 2 | 1 | 592 | 1 | 594 | 0.0 | 1086 |
| Msa1180420 | MtrunA17_Chr2g0330791 | 51.329 | 602 | 211 | 18 | 12 | 590 | 2 | 544 | 3.08e-172 | 499 |
| Msa1180420 | MtrunA17_Chr5g0422391 | 40.000 | 320 | 180 | 3 | 120 | 435 | 108 | 419 | 1.36e-60 | 217 |
| Msa1180420 | MtrunA17_Chr1g0198861 | 38.281 | 384 | 201 | 8 | 112 | 470 | 96 | 468 | 2.09e-60 | 216 |
| Msa1180420 | MtrunA17_Chr1g0179671 | 25.138 | 362 | 226 | 6 | 20 | 372 | 11 | 336 | 4.13e-24 | 105 |
| Msa1180420 | MtrunA17_Chr2g0307341 | 24.803 | 254 | 181 | 3 | 130 | 381 | 48 | 293 | 2.19e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180420 | AT1G52080.2 | 40.661 | 605 | 297 | 16 | 12 | 589 | 2 | 571 | 5.55e-113 | 349 |
| Msa1180420 | AT1G52080.1 | 40.661 | 605 | 297 | 16 | 12 | 589 | 2 | 571 | 5.55e-113 | 349 |
| Msa1180420 | AT3G25690.5 | 43.854 | 301 | 157 | 4 | 139 | 435 | 132 | 424 | 1.93e-63 | 226 |
| Msa1180420 | AT3G25690.1 | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 2.02e-63 | 226 |
| Msa1180420 | AT3G25690.2 | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 2.02e-63 | 226 |
| Msa1180420 | AT3G25690.6 | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 2.02e-63 | 226 |
| Msa1180420 | AT3G25690.4 | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 2.02e-63 | 226 |
| Msa1180420 | AT3G25690.3 | 41.597 | 238 | 127 | 3 | 202 | 435 | 52 | 281 | 2.13e-43 | 167 |
Find 90 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCATTGTGTTTGTTTCT+TGG | 0.126048 | 8_1:+14387841 | None:intergenic |
| TCATTCAGAAGGAAATAATT+TGG | 0.223483 | 8_1:-14388356 | Msa1180420:CDS |
| GCTTTGGCTCTTACCTTTGC+TGG | 0.243022 | 8_1:-14388748 | Msa1180420:CDS |
| TTATGCATGTGTAATAAATA+AGG | 0.248157 | 8_1:-14385949 | Msa1180420:three_prime_UTR |
| CTTCTATTTAAACGAGGTTT+AGG | 0.262593 | 8_1:+14386090 | None:intergenic |
| AAACCTGAAGAGGGTCCTTT+AGG | 0.264382 | 8_1:+14388682 | None:intergenic |
| GTAATATCTCACAATATTAA+TGG | 0.280466 | 8_1:-14388854 | Msa1180420:exon |
| TATAGGTATGGAGCAGAAAT+TGG | 0.281495 | 8_1:-14388922 | Msa1180420:intron |
| TCCCCTAAAGGACCCTCTTC+AGG | 0.287693 | 8_1:-14388685 | Msa1180420:intron |
| GGCGAAAATGTTTAACCTTA+AGG | 0.295638 | 8_1:-14387593 | Msa1180420:CDS |
| CAACGGTTTCTTGTTCTCTT+AGG | 0.312823 | 8_1:+14387656 | None:intergenic |
| TAGCAACAGCTTTGCATTCA+AGG | 0.317563 | 8_1:+14387386 | None:intergenic |
| GAATGCAGGCAGATGCTCTA+AGG | 0.321147 | 8_1:-14386875 | Msa1180420:intron |
| ACTCAAATGTGGTTTGGCTT+TGG | 0.325603 | 8_1:-14388764 | Msa1180420:CDS |
| AAATTGAAATGAAGCTAAAA+AGG | 0.328398 | 8_1:-14387354 | Msa1180420:CDS |
| AACCTGAAGAGGGTCCTTTA+GGG | 0.331000 | 8_1:+14388683 | None:intergenic |
| CTGATATGGTATATCAGAAT+TGG | 0.370741 | 8_1:+14385977 | None:intergenic |
| TTATGACTTAGCTAAAAGAT+TGG | 0.382704 | 8_1:-14387266 | Msa1180420:CDS |
| ATTCAAGTAGTTGAACTTCA+AGG | 0.388165 | 8_1:+14387686 | None:intergenic |
| AAACCACATTTGAGTAGAAT+AGG | 0.391571 | 8_1:+14388772 | None:intergenic |
| GTATGAAGCTGAACAGAATA+AGG | 0.392445 | 8_1:-14387452 | Msa1180420:CDS |
| CATGCATAAATAATCTGATA+TGG | 0.392871 | 8_1:+14385963 | None:intergenic |
| TATTCTACTCAAATGTGGTT+TGG | 0.397527 | 8_1:-14388770 | Msa1180420:CDS |
| TTTCTTGGTGAGACAACAAT+TGG | 0.404180 | 8_1:+14387856 | None:intergenic |
| AAACAATACATTATGTTTGA+AGG | 0.419900 | 8_1:-14386286 | Msa1180420:CDS |
| GGAAAAGTGTCGCAGGAGAT+TGG | 0.426401 | 8_1:-14386212 | Msa1180420:CDS |
| TTGATAGCAAGAGATGATAA+AGG | 0.445996 | 8_1:-14388802 | Msa1180420:CDS |
| GAAAAGAAACAAACCTGAAG+AGG | 0.448652 | 8_1:+14388672 | None:intergenic |
| CAATGCCGCAAACAAGTCTA+AGG | 0.449602 | 8_1:-14386475 | Msa1180420:CDS |
| TTAGCTTTCTTCTCAGAAGT+TGG | 0.449990 | 8_1:+14386657 | None:intergenic |
| ATTGTAGTGTCTCAACCTTA+AGG | 0.451559 | 8_1:+14387578 | None:intergenic |
| TCTTCTTATGTAACAGATCC+TGG | 0.460864 | 8_1:-14386549 | Msa1180420:CDS |
| AGGATCAAGCCTTCCCCTAA+AGG | 0.467850 | 8_1:-14388697 | Msa1180420:CDS |
| ATCTGAGAATAGGAGATTAG+AGG | 0.469882 | 8_1:-14387557 | Msa1180420:CDS |
| TATGTTTGAAGGAAGAGAGT+AGG | 0.473286 | 8_1:-14386275 | Msa1180420:CDS |
| AAACTTATGAAACTGATAAG+AGG | 0.474850 | 8_1:-14386444 | Msa1180420:CDS |
| AGAACAAGAAACCGTTGTAA+TGG | 0.477590 | 8_1:-14387650 | Msa1180420:CDS |
| GCAAACAAGTCTAAGGTCTT+CGG | 0.481041 | 8_1:-14386468 | Msa1180420:CDS |
| AGACACTACAATCTGAGAAT+AGG | 0.482967 | 8_1:-14387567 | Msa1180420:CDS |
| GAAGACCTTAGACTTGTTTG+CGG | 0.484641 | 8_1:+14386470 | None:intergenic |
| CTTCGTTTGCTTGTCTGAGA+CGG | 0.493290 | 8_1:+14386841 | None:intergenic |
| GAATAGGAGATTAGAGGCAC+AGG | 0.496074 | 8_1:-14387551 | Msa1180420:CDS |
| CTCACAATATTAATGGAGAA+AGG | 0.496677 | 8_1:-14388847 | Msa1180420:exon |
| TGCTGATCATGCTAAAGTCT+TGG | 0.504980 | 8_1:-14387527 | Msa1180420:CDS |
| TCGAGACTTGCATACGCTGA+TGG | 0.511527 | 8_1:+14387781 | None:intergenic |
| ATGCTAGTGAAGTTAATTCA+AGG | 0.515572 | 8_1:-14388411 | Msa1180420:CDS |
| TTGAATTAACTTCACTAGCA+TGG | 0.523925 | 8_1:+14388413 | None:intergenic |
| ATCTAATTTGAGATTGCAGA+TGG | 0.524116 | 8_1:-14387293 | Msa1180420:CDS |
| TGGAGAAAGGAATATTTACA+AGG | 0.530878 | 8_1:-14388834 | Msa1180420:CDS |
| AAGAACTAGTTTATCAGAGG+TGG | 0.536919 | 8_1:-14386767 | Msa1180420:CDS |
| GCTTAGTGATCTTGAGGATG+AGG | 0.544815 | 8_1:-14387332 | Msa1180420:CDS |
| AGTAGGAGAAATTCTGACGT+TGG | 0.549837 | 8_1:-14386258 | Msa1180420:CDS |
| GCTTAAAGAGTTTCAGTCGA+AGG | 0.552357 | 8_1:-14386233 | Msa1180420:CDS |
| CACCAGGCAAAACAGTTGCA+AGG | 0.558418 | 8_1:-14386701 | Msa1180420:CDS |
| AATGCAGGCAGATGCTCTAA+GGG | 0.558679 | 8_1:-14386874 | Msa1180420:intron |
| GAAGAGGGTCCTTTAGGGGA+AGG | 0.559049 | 8_1:+14388688 | None:intergenic |
| CTTGAATATGCAAATGCTGA+AGG | 0.559363 | 8_1:-14386624 | Msa1180420:CDS |
| GGTCATAATGCTTCAAGAGA+GGG | 0.576856 | 8_1:-14387716 | Msa1180420:CDS |
| AGAGAAGAGAAAACCAGCAA+AGG | 0.577244 | 8_1:+14388735 | None:intergenic |
| CTTCTAGAACAGCATTTGCA+AGG | 0.578158 | 8_1:+14387230 | None:intergenic |
| AACTTATGAAACTGATAAGA+GGG | 0.578869 | 8_1:-14386443 | Msa1180420:CDS |
| CAGATTGAAAATAAGTAACA+TGG | 0.578965 | 8_1:-14387617 | Msa1180420:CDS |
| TGAATGCAAAGCTGTTGCTA+AGG | 0.582832 | 8_1:-14387383 | Msa1180420:CDS |
| AGGATGAGGCGGAACAGTGT+AGG | 0.584999 | 8_1:-14387318 | Msa1180420:CDS |
| AGTCGAAGGAAAAGTGTCGC+AGG | 0.585267 | 8_1:-14386219 | Msa1180420:CDS |
| AGAAACTATCAACCTGCACC+AGG | 0.596580 | 8_1:-14386717 | Msa1180420:CDS |
| TTGAAGAACTAGTTTATCAG+AGG | 0.600293 | 8_1:-14386770 | Msa1180420:CDS |
| AAGCCTATTCTACTCAAATG+TGG | 0.609626 | 8_1:-14388775 | Msa1180420:CDS |
| TGGTCATAATGCTTCAAGAG+AGG | 0.612273 | 8_1:-14387717 | Msa1180420:CDS |
| GATCAAATTAGATTTGTCTG+AGG | 0.613564 | 8_1:+14386155 | None:intergenic |
| GTTCAACTACTTGAATATTG+CGG | 0.615028 | 8_1:-14387679 | Msa1180420:CDS |
| AAAAGAAACAAACCTGAAGA+GGG | 0.615551 | 8_1:+14388673 | None:intergenic |
| GGCATTGTTGAGTCTTACAT+CGG | 0.619385 | 8_1:+14386491 | None:intergenic |
| TAAAGTCTTGGCAGAACTCG+AGG | 0.621284 | 8_1:-14387515 | Msa1180420:CDS |
| AAAGATAGTAGAAATCATCT+CGG | 0.634734 | 8_1:-14386420 | Msa1180420:CDS |
| ACCAGGCAAAACAGTTGCAA+GGG | 0.635294 | 8_1:-14386700 | Msa1180420:CDS |
| TTCAACATGATAAAATAGAG+AGG | 0.635473 | 8_1:-14389334 | None:intergenic |
| ACCTGAAGAGGGTCCTTTAG+GGG | 0.638535 | 8_1:+14388684 | None:intergenic |
| GGAAGAAACATGCATCAACA+AGG | 0.644380 | 8_1:-14387896 | Msa1180420:CDS |
| TAGTGATCTTGAGGATGAGG+CGG | 0.651810 | 8_1:-14387329 | Msa1180420:CDS |
| TACATAAGAAGAAGCTCGTG+AGG | 0.658790 | 8_1:+14386560 | None:intergenic |
| GAATACTCATCACTGTCACC+AGG | 0.666831 | 8_1:+14386531 | None:intergenic |
| GATCAGAAAACTGAAGAACA+TGG | 0.669416 | 8_1:-14387737 | Msa1180420:CDS |
| TCACCAAGAAACAAACACAA+TGG | 0.681524 | 8_1:-14387844 | Msa1180420:CDS |
| ATAAGAAGAAGCTCGTGAGG+AGG | 0.682353 | 8_1:+14386563 | None:intergenic |
| ATTGAAAATAAGTAACATGG+AGG | 0.698457 | 8_1:-14387614 | Msa1180420:CDS |
| GATAGTAGAAATCATCTCGG+TGG | 0.702425 | 8_1:-14386417 | Msa1180420:CDS |
| GATGATCTTCTATTTAAACG+AGG | 0.702467 | 8_1:+14386084 | None:intergenic |
| AGAGAAGATAGCATTAACGA+TGG | 0.708645 | 8_1:-14386363 | Msa1180420:CDS |
| AGAAACATGCATCAACAAGG+TGG | 0.720923 | 8_1:-14387893 | Msa1180420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATAAAAATAAT+CGG | + | chr8_1:14386189-14386208 | None:intergenic | 0.0% |
| !!! | GTATTTGATTTTAACATTTA+AGG | - | chr8_1:14385944-14385963 | Msa1180420:three_prime_UTR | 15.0% |
| !!! | TTTTAATGGTTTCTAATTTT+TGG | - | chr8_1:14386230-14386249 | Msa1180420:CDS | 15.0% |
| !! | ACTTATCATATTATTGTTTA+TGG | - | chr8_1:14386606-14386625 | Msa1180420:CDS | 15.0% |
| !!! | TTGCATGTATGTAATTTTAA+TGG | - | chr8_1:14386216-14386235 | Msa1180420:CDS | 20.0% |
| !!! | AATTTTTCTGATGAATTTGT+GGG | - | chr8_1:14386262-14386281 | Msa1180420:CDS | 20.0% |
| !! | GTAATATCTCACAATATTAA+TGG | - | chr8_1:14386365-14386384 | Msa1180420:CDS | 20.0% |
| !!! | TTGTAATTTTAATGAACTTG+AGG | - | chr8_1:14387081-14387100 | Msa1180420:intron | 20.0% |
| !!! | AGCTATAAGTTGTTTTTATA+AGG | - | chr8_1:14387243-14387262 | Msa1180420:CDS | 20.0% |
| !! | TTCAACTAAAATAAGATTGT+TGG | - | chr8_1:14387285-14387304 | Msa1180420:CDS | 20.0% |
| !! | AAATTGAAATGAAGCTAAAA+AGG | - | chr8_1:14387865-14387884 | Msa1180420:CDS | 20.0% |
| !! | AAACAATACATTATGTTTGA+AGG | - | chr8_1:14388933-14388952 | Msa1180420:intron | 20.0% |
| !! | TTATGCATGTGTAATAAATA+AGG | - | chr8_1:14389270-14389289 | Msa1180420:intron | 20.0% |
| !!! | TTCATATACAGTTTTGTTAG+AGG | - | chr8_1:14386072-14386091 | Msa1180420:CDS | 25.0% |
| !!! | TTTCTAATTTTTGGTTGTGA+TGG | - | chr8_1:14386239-14386258 | Msa1180420:CDS | 25.0% |
| !! | GAATTTTTCTGATGAATTTG+TGG | - | chr8_1:14386261-14386280 | Msa1180420:CDS | 25.0% |
| !!! | ATTTGTTGTGTTTATAGGTA+TGG | - | chr8_1:14386285-14386304 | Msa1180420:CDS | 25.0% |
| !!! | TCTCTCATTTTAGAACAAAA+AGG | - | chr8_1:14386502-14386521 | Msa1180420:CDS | 25.0% |
| ! | TCATTCAGAAGGAAATAATT+TGG | - | chr8_1:14386863-14386882 | Msa1180420:CDS | 25.0% |
| !!! | TATGTCTTTTTTTTGCTGAT+AGG | - | chr8_1:14386934-14386953 | Msa1180420:intron | 25.0% |
| ! | ATCAACAATACAACAAGATT+TGG | + | chr8_1:14387051-14387070 | None:intergenic | 25.0% |
| ! | CACTTATATGATAAACGTTT+AGG | + | chr8_1:14387165-14387184 | None:intergenic | 25.0% |
| ! | TGATTATGCATAAGCTATTT+CGG | - | chr8_1:14387183-14387202 | Msa1180420:intron | 25.0% |
| !!! | GTTGTTTTTATAAGGTATCT+TGG | - | chr8_1:14387251-14387270 | Msa1180420:CDS | 25.0% |
| ! | CAGATTGAAAATAAGTAACA+TGG | - | chr8_1:14387602-14387621 | Msa1180420:CDS | 25.0% |
| ! | ATTGAAAATAAGTAACATGG+AGG | - | chr8_1:14387605-14387624 | Msa1180420:CDS | 25.0% |
| ! | TTATGACTTAGCTAAAAGAT+TGG | - | chr8_1:14387953-14387972 | Msa1180420:intron | 25.0% |
| ! | CGGTTATAATTATCAATCTA+AGG | - | chr8_1:14388029-14388048 | Msa1180420:intron | 25.0% |
| !!! | ACAAGTTTTTTATCCAAACA+TGG | + | chr8_1:14388055-14388074 | None:intergenic | 25.0% |
| ! | AAACTTATGAAACTGATAAG+AGG | - | chr8_1:14388775-14388794 | Msa1180420:CDS | 25.0% |
| ! | AACTTATGAAACTGATAAGA+GGG | - | chr8_1:14388776-14388795 | Msa1180420:CDS | 25.0% |
| ! | AAAGATAGTAGAAATCATCT+CGG | - | chr8_1:14388799-14388818 | Msa1180420:CDS | 25.0% |
| !!! | AATTGAATTTTGAGTCATGT+CGG | + | chr8_1:14388908-14388927 | None:intergenic | 25.0% |
| ! | GATATTTACAGTAAAAAAGG+TGG | + | chr8_1:14389206-14389225 | None:intergenic | 25.0% |
| ! | TGCGATATTTACAGTAAAAA+AGG | + | chr8_1:14389209-14389228 | None:intergenic | 25.0% |
| !!! | TTTTTTACTGTAAATATCGC+AGG | - | chr8_1:14389208-14389227 | Msa1180420:intron | 25.0% |
| ! | CATGCATAAATAATCTGATA+TGG | + | chr8_1:14389259-14389278 | None:intergenic | 25.0% |
| CAAAACTGTATATGAAGCAA+TGG | + | chr8_1:14386068-14386087 | None:intergenic | 30.0% | |
| !!! | ATATACAGTTTTGTTAGAGG+TGG | - | chr8_1:14386075-14386094 | Msa1180420:CDS | 30.0% |
| CTCACAATATTAATGGAGAA+AGG | - | chr8_1:14386372-14386391 | Msa1180420:CDS | 30.0% | |
| TGGAGAAAGGAATATTTACA+AGG | - | chr8_1:14386385-14386404 | Msa1180420:CDS | 30.0% | |
| ! | TTGATAGCAAGAGATGATAA+AGG | - | chr8_1:14386417-14386436 | Msa1180420:CDS | 30.0% |
| AAACCACATTTGAGTAGAAT+AGG | + | chr8_1:14386450-14386469 | None:intergenic | 30.0% | |
| TATTCTACTCAAATGTGGTT+TGG | - | chr8_1:14386449-14386468 | Msa1180420:CDS | 30.0% | |
| AAAAGAAACAAACCTGAAGA+GGG | + | chr8_1:14386549-14386568 | None:intergenic | 30.0% | |
| ATACTAGCATAGAGACTATT+TGG | + | chr8_1:14386711-14386730 | None:intergenic | 30.0% | |
| ! | GTATGTATGATGTTTTTCTC+AGG | - | chr8_1:14386783-14386802 | Msa1180420:CDS | 30.0% |
| TTGAATTAACTTCACTAGCA+TGG | + | chr8_1:14386809-14386828 | None:intergenic | 30.0% | |
| ATGCTAGTGAAGTTAATTCA+AGG | - | chr8_1:14386808-14386827 | Msa1180420:CDS | 30.0% | |
| ATGAATGTTGCAAAAACTTG+AGG | + | chr8_1:14386847-14386866 | None:intergenic | 30.0% | |
| ! | TTTTGCAACATTCATTCAGA+AGG | - | chr8_1:14386852-14386871 | Msa1180420:CDS | 30.0% |
| ! | TGTTGGATTTCTTTGATAAC+AGG | - | chr8_1:14387302-14387321 | Msa1180420:CDS | 30.0% |
| ATTCAAGTAGTTGAACTTCA+AGG | + | chr8_1:14387536-14387555 | None:intergenic | 30.0% | |
| GTTCAACTACTTGAATATTG+CGG | - | chr8_1:14387540-14387559 | Msa1180420:CDS | 30.0% | |
| ! | ATCTAATTTGAGATTGCAGA+TGG | - | chr8_1:14387926-14387945 | Msa1180420:intron | 30.0% |
| AAGATCCAGAAGTAATAATG+CGG | - | chr8_1:14388009-14388028 | Msa1180420:intron | 30.0% | |
| TATAACCGCATTATTACTTC+TGG | + | chr8_1:14388017-14388036 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr8_1:14388269-14388288 | Msa1180420:intron | 30.0% | |
| GTTATTCAAGAAAGAGCAAA+GGG | + | chr8_1:14388296-14388315 | None:intergenic | 30.0% | |
| AGTTATTCAAGAAAGAGCAA+AGG | + | chr8_1:14388297-14388316 | None:intergenic | 30.0% | |
| !!! | TCACCTTTTATTTTGAATGC+AGG | - | chr8_1:14388330-14388349 | Msa1180420:intron | 30.0% |
| ! | TTGAAGAACTAGTTTATCAG+AGG | - | chr8_1:14388449-14388468 | Msa1180420:intron | 30.0% |
| !!! | CTGATTTTGATTCTGATCAA+TGG | - | chr8_1:14388632-14388651 | Msa1180420:intron | 30.0% |
| GATCAAATTAGATTTGTCTG+AGG | + | chr8_1:14389067-14389086 | None:intergenic | 30.0% | |
| CTTCTATTTAAACGAGGTTT+AGG | + | chr8_1:14389132-14389151 | None:intergenic | 30.0% | |
| GATGATCTTCTATTTAAACG+AGG | + | chr8_1:14389138-14389157 | None:intergenic | 30.0% | |
| CTGATATGGTATATCAGAAT+TGG | + | chr8_1:14389245-14389264 | None:intergenic | 30.0% | |
| !! | GTGGGATTTGTTGTGTTTAT+AGG | - | chr8_1:14386280-14386299 | Msa1180420:CDS | 35.0% |
| TATAGGTATGGAGCAGAAAT+TGG | - | chr8_1:14386297-14386316 | Msa1180420:CDS | 35.0% | |
| !!! | TTGGCTCTATGTTTTCTTCA+TGG | - | chr8_1:14386316-14386335 | Msa1180420:CDS | 35.0% |
| AAGCCTATTCTACTCAAATG+TGG | - | chr8_1:14386444-14386463 | Msa1180420:CDS | 35.0% | |
| GAAAAGAAACAAACCTGAAG+AGG | + | chr8_1:14386550-14386569 | None:intergenic | 35.0% | |
| AGACTATTTGGAAGAGCTTA+TGG | + | chr8_1:14386699-14386718 | None:intergenic | 35.0% | |
| TTTCTTGGTGAGACAACAAT+TGG | + | chr8_1:14387366-14387385 | None:intergenic | 35.0% | |
| TCACCAAGAAACAAACACAA+TGG | - | chr8_1:14387375-14387394 | Msa1180420:CDS | 35.0% | |
| ! | TCTCCATTGTGTTTGTTTCT+TGG | + | chr8_1:14387381-14387400 | None:intergenic | 35.0% |
| ! | TTTTCTGATCTCTTGCTCAT+AGG | + | chr8_1:14387472-14387491 | None:intergenic | 35.0% |
| GATCAGAAAACTGAAGAACA+TGG | - | chr8_1:14387482-14387501 | Msa1180420:CDS | 35.0% | |
| AGAACAAGAAACCGTTGTAA+TGG | - | chr8_1:14387569-14387588 | Msa1180420:CDS | 35.0% | |
| !!! | GTTTTGAAGCTCCATTACAA+CGG | + | chr8_1:14387583-14387602 | None:intergenic | 35.0% |
| GGCGAAAATGTTTAACCTTA+AGG | - | chr8_1:14387626-14387645 | Msa1180420:CDS | 35.0% | |
| ATTGTAGTGTCTCAACCTTA+AGG | + | chr8_1:14387644-14387663 | None:intergenic | 35.0% | |
| AGACACTACAATCTGAGAAT+AGG | - | chr8_1:14387652-14387671 | Msa1180420:CDS | 35.0% | |
| ATCTGAGAATAGGAGATTAG+AGG | - | chr8_1:14387662-14387681 | Msa1180420:CDS | 35.0% | |
| GTATGAAGCTGAACAGAATA+AGG | - | chr8_1:14387767-14387786 | Msa1180420:CDS | 35.0% | |
| ACAAAAAGTTTCGAAGTTGC+AGG | - | chr8_1:14387809-14387828 | Msa1180420:CDS | 35.0% | |
| AAAAAGGCTTAGTGATCTTG+AGG | - | chr8_1:14387881-14387900 | Msa1180420:CDS | 35.0% | |
| ! | TATCAATCTAAGGCCATGTT+TGG | - | chr8_1:14388039-14388058 | Msa1180420:intron | 35.0% |
| GCTCTCTTAAATAGTCTCAT+AGG | - | chr8_1:14388225-14388244 | Msa1180420:intron | 35.0% | |
| CTGCCTGCATTCAAAATAAA+AGG | + | chr8_1:14388336-14388355 | None:intergenic | 35.0% | |
| ! | AAGAACTAGTTTATCAGAGG+TGG | - | chr8_1:14388452-14388471 | Msa1180420:intron | 35.0% |
| ! | TTAGCTTTCTTCTCAGAAGT+TGG | + | chr8_1:14388565-14388584 | None:intergenic | 35.0% |
| CTTGAATATGCAAATGCTGA+AGG | - | chr8_1:14388595-14388614 | Msa1180420:intron | 35.0% | |
| TCTTCTTATGTAACAGATCC+TGG | - | chr8_1:14388670-14388689 | Msa1180420:intron | 35.0% | |
| AGAGAAGATAGCATTAACGA+TGG | - | chr8_1:14388856-14388875 | Msa1180420:exon | 35.0% | |
| TATGTTTGAAGGAAGAGAGT+AGG | - | chr8_1:14388944-14388963 | Msa1180420:intron | 35.0% | |
| TTTGATGTATTTGCTCGCAG+AGG | - | chr8_1:14386159-14386178 | Msa1180420:CDS | 40.0% | |
| ! | ACTCAAATGTGGTTTGGCTT+TGG | - | chr8_1:14386455-14386474 | Msa1180420:CDS | 40.0% |
| AGAGAAGAGAAAACCAGCAA+AGG | + | chr8_1:14386487-14386506 | None:intergenic | 40.0% | |
| ! | TGCATAAGCTATTTCGGTAC+AGG | - | chr8_1:14387189-14387208 | Msa1180420:intron | 40.0% |
| GGAAGAAACATGCATCAACA+AGG | - | chr8_1:14387323-14387342 | Msa1180420:CDS | 40.0% | |
| AGAAACATGCATCAACAAGG+TGG | - | chr8_1:14387326-14387345 | Msa1180420:CDS | 40.0% | |
| TGGTCATAATGCTTCAAGAG+AGG | - | chr8_1:14387502-14387521 | Msa1180420:CDS | 40.0% | |
| GGTCATAATGCTTCAAGAGA+GGG | - | chr8_1:14387503-14387522 | Msa1180420:CDS | 40.0% | |
| CAACGGTTTCTTGTTCTCTT+AGG | + | chr8_1:14387566-14387585 | None:intergenic | 40.0% | |
| TGCTGATCATGCTAAAGTCT+TGG | - | chr8_1:14387692-14387711 | Msa1180420:CDS | 40.0% | |
| TAGCAACAGCTTTGCATTCA+AGG | + | chr8_1:14387836-14387855 | None:intergenic | 40.0% | |
| TGAATGCAAAGCTGTTGCTA+AGG | - | chr8_1:14387836-14387855 | Msa1180420:CDS | 40.0% | |
| !! | CTTCTAGAACAGCATTTGCA+AGG | + | chr8_1:14387992-14388011 | None:intergenic | 40.0% |
| TAAGCTCTTCAGGATAGCTT+AGG | + | chr8_1:14388178-14388197 | None:intergenic | 40.0% | |
| AAGCTATCCTGAAGAGCTTA+TGG | - | chr8_1:14388178-14388197 | Msa1180420:intron | 40.0% | |
| TACATAAGAAGAAGCTCGTG+AGG | + | chr8_1:14388662-14388681 | None:intergenic | 40.0% | |
| !! | ACATCGGACGAATTTTCAAG+AGG | + | chr8_1:14388715-14388734 | None:intergenic | 40.0% |
| GGCATTGTTGAGTCTTACAT+CGG | + | chr8_1:14388731-14388750 | None:intergenic | 40.0% | |
| ! | GAAGACCTTAGACTTGTTTG+CGG | + | chr8_1:14388752-14388771 | None:intergenic | 40.0% |
| ! | GCAAACAAGTCTAAGGTCTT+CGG | - | chr8_1:14388751-14388770 | Msa1180420:CDS | 40.0% |
| GATAGTAGAAATCATCTCGG+TGG | - | chr8_1:14388802-14388821 | Msa1180420:CDS | 40.0% | |
| AGTAGGAGAAATTCTGACGT+TGG | - | chr8_1:14388961-14388980 | Msa1180420:intron | 40.0% | |
| GCTTAAAGAGTTTCAGTCGA+AGG | - | chr8_1:14388986-14389005 | Msa1180420:intron | 40.0% | |
| AACCTGAAGAGGGTCCTTTA+GGG | + | chr8_1:14386539-14386558 | None:intergenic | 45.0% | |
| AAACCTGAAGAGGGTCCTTT+AGG | + | chr8_1:14386540-14386559 | None:intergenic | 45.0% | |
| ! | GAATAGGAGATTAGAGGCAC+AGG | - | chr8_1:14387668-14387687 | Msa1180420:CDS | 45.0% |
| TAAAGTCTTGGCAGAACTCG+AGG | - | chr8_1:14387704-14387723 | Msa1180420:CDS | 45.0% | |
| GCTTAGTGATCTTGAGGATG+AGG | - | chr8_1:14387887-14387906 | Msa1180420:CDS | 45.0% | |
| TAGTGATCTTGAGGATGAGG+CGG | - | chr8_1:14387890-14387909 | Msa1180420:CDS | 45.0% | |
| GACATGTCCATAAGCTCTTC+AGG | + | chr8_1:14388188-14388207 | None:intergenic | 45.0% | |
| CTCATAGGTGCTTATGCTAG+TGG | - | chr8_1:14388240-14388259 | Msa1180420:intron | 45.0% | |
| AAAGAGCAAAGGGACCTGTT+TGG | + | chr8_1:14388286-14388305 | None:intergenic | 45.0% | |
| AATGCAGGCAGATGCTCTAA+GGG | - | chr8_1:14388345-14388364 | Msa1180420:intron | 45.0% | |
| CTTCGTTTGCTTGTCTGAGA+CGG | + | chr8_1:14388381-14388400 | None:intergenic | 45.0% | |
| AGAAACTATCAACCTGCACC+AGG | - | chr8_1:14388502-14388521 | Msa1180420:intron | 45.0% | |
| ACCAGGCAAAACAGTTGCAA+GGG | - | chr8_1:14388519-14388538 | Msa1180420:intron | 45.0% | |
| ATAAGAAGAAGCTCGTGAGG+AGG | + | chr8_1:14388659-14388678 | None:intergenic | 45.0% | |
| GAATACTCATCACTGTCACC+AGG | + | chr8_1:14388691-14388710 | None:intergenic | 45.0% | |
| CAATGCCGCAAACAAGTCTA+AGG | - | chr8_1:14388744-14388763 | Msa1180420:CDS | 45.0% | |
| !!! | TTTTTATTTTTTTTTTAAAG+TGG | - | chr8_1:14386193-14386212 | Msa1180420:CDS | 5.0% |
| !! | GCTTTGGCTCTTACCTTTGC+TGG | - | chr8_1:14386471-14386490 | Msa1180420:CDS | 50.0% |
| AGGATCAAGCCTTCCCCTAA+AGG | - | chr8_1:14386522-14386541 | Msa1180420:CDS | 50.0% | |
| ACCTGAAGAGGGTCCTTTAG+GGG | + | chr8_1:14386538-14386557 | None:intergenic | 50.0% | |
| TCGAGACTTGCATACGCTGA+TGG | + | chr8_1:14387441-14387460 | None:intergenic | 50.0% | |
| GAATGCAGGCAGATGCTCTA+AGG | - | chr8_1:14388344-14388363 | Msa1180420:intron | 50.0% | |
| CACCAGGCAAAACAGTTGCA+AGG | - | chr8_1:14388518-14388537 | Msa1180420:intron | 50.0% | |
| ! | TCCCTTGCAACTGTTTTGCC+TGG | + | chr8_1:14388523-14388542 | None:intergenic | 50.0% |
| !! | AGTCGAAGGAAAAGTGTCGC+AGG | - | chr8_1:14389000-14389019 | Msa1180420:intron | 50.0% |
| !! | GGAAAAGTGTCGCAGGAGAT+TGG | - | chr8_1:14389007-14389026 | Msa1180420:intron | 50.0% |
| ! | GAAGAGGGTCCTTTAGGGGA+AGG | + | chr8_1:14386534-14386553 | None:intergenic | 55.0% |
| TCCCCTAAAGGACCCTCTTC+AGG | - | chr8_1:14386534-14386553 | Msa1180420:CDS | 55.0% | |
| AGGATGAGGCGGAACAGTGT+AGG | - | chr8_1:14387901-14387920 | Msa1180420:intron | 55.0% | |
| ! | GCAACTGTTTTGCCTGGTGC+AGG | + | chr8_1:14388517-14388536 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 14385900 | 14389341 | 14385900 | ID=Msa1180420;Name=Msa1180420 |
| chr8_1 | mRNA | 14385900 | 14389341 | 14385900 | ID=Msa1180420-mRNA-1;Parent=Msa1180420;Name=Msa1180420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=148|1|0.8|1|0.75|0.6|5|165|592 |
| chr8_1 | exon | 14385900 | 14386889 | 14385900 | ID=Msa1180420-mRNA-1:exon:5332;Parent=Msa1180420-mRNA-1 |
| chr8_1 | exon | 14387222 | 14387917 | 14387222 | ID=Msa1180420-mRNA-1:exon:5331;Parent=Msa1180420-mRNA-1 |
| chr8_1 | exon | 14388351 | 14388436 | 14388351 | ID=Msa1180420-mRNA-1:exon:5330;Parent=Msa1180420-mRNA-1 |
| chr8_1 | exon | 14388686 | 14388939 | 14388686 | ID=Msa1180420-mRNA-1:exon:5329;Parent=Msa1180420-mRNA-1 |
| chr8_1 | exon | 14389276 | 14389341 | 14389276 | ID=Msa1180420-mRNA-1:exon:5328;Parent=Msa1180420-mRNA-1 |
| chr8_1 | five_prime_UTR | 14389276 | 14389341 | 14389276 | ID=Msa1180420-mRNA-1:five_prime_utr;Parent=Msa1180420-mRNA-1 |
| chr8_1 | five_prime_UTR | 14388858 | 14388939 | 14388858 | ID=Msa1180420-mRNA-1:five_prime_utr;Parent=Msa1180420-mRNA-1 |
| chr8_1 | CDS | 14388686 | 14388857 | 14388686 | ID=Msa1180420-mRNA-1:cds;Parent=Msa1180420-mRNA-1 |
| chr8_1 | CDS | 14388351 | 14388436 | 14388351 | ID=Msa1180420-mRNA-1:cds;Parent=Msa1180420-mRNA-1 |
| chr8_1 | CDS | 14387222 | 14387917 | 14387222 | ID=Msa1180420-mRNA-1:cds;Parent=Msa1180420-mRNA-1 |
| chr8_1 | CDS | 14386065 | 14386889 | 14386065 | ID=Msa1180420-mRNA-1:cds;Parent=Msa1180420-mRNA-1 |
| chr8_1 | three_prime_UTR | 14385900 | 14386064 | 14385900 | ID=Msa1180420-mRNA-1:three_prime_utr;Parent=Msa1180420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
