Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312740 | XP_003627081.1 | 77.621 | 496 | 36 | 3 | 3 | 423 | 99 | 594 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312740 | sp|Q9LI74|CHUP1_ARATH | 36.879 | 282 | 101 | 3 | 44 | 248 | 130 | 411 | 2.70e-39 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312740 | G7LHE1 | 77.621 | 496 | 36 | 3 | 3 | 423 | 99 | 594 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223380 | Msa1312740 | 0.807172 | 5.754486e-50 | -8.615850e-47 |
| Msa0233610 | Msa1312740 | 0.813186 | 2.907303e-51 | -8.615850e-47 |
| Msa1274730 | Msa1312740 | 0.930705 | 1.109455e-93 | -8.615850e-47 |
| Msa1180420 | Msa1312740 | 0.843594 | 1.272963e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312740 | MtrunA17_Chr8g0340991 | 77.621 | 496 | 36 | 3 | 3 | 423 | 99 | 594 | 0.0 | 715 |
| Msa1312740 | MtrunA17_Chr2g0330791 | 43.838 | 495 | 149 | 15 | 14 | 421 | 92 | 544 | 1.00e-102 | 315 |
| Msa1312740 | MtrunA17_Chr1g0198861 | 33.159 | 383 | 148 | 8 | 17 | 301 | 96 | 468 | 5.21e-41 | 155 |
| Msa1312740 | MtrunA17_Chr5g0422391 | 33.856 | 319 | 127 | 4 | 25 | 266 | 108 | 419 | 1.35e-39 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312740 | AT1G52080.2 | 38.701 | 354 | 114 | 6 | 6 | 261 | 80 | 428 | 5.63e-60 | 205 |
| Msa1312740 | AT1G52080.1 | 38.701 | 354 | 114 | 6 | 6 | 261 | 80 | 428 | 5.63e-60 | 205 |
| Msa1312740 | AT3G25690.1 | 36.879 | 282 | 101 | 3 | 44 | 248 | 130 | 411 | 2.75e-40 | 154 |
| Msa1312740 | AT3G25690.2 | 36.879 | 282 | 101 | 3 | 44 | 248 | 130 | 411 | 2.75e-40 | 154 |
| Msa1312740 | AT3G25690.6 | 36.879 | 282 | 101 | 3 | 44 | 248 | 130 | 411 | 2.75e-40 | 154 |
| Msa1312740 | AT3G25690.4 | 36.879 | 282 | 101 | 3 | 44 | 248 | 130 | 411 | 2.75e-40 | 154 |
| Msa1312740 | AT3G25690.5 | 36.879 | 282 | 101 | 3 | 44 | 248 | 132 | 413 | 3.02e-40 | 154 |
| Msa1312740 | AT3G25690.3 | 41.262 | 206 | 79 | 2 | 85 | 248 | 65 | 270 | 5.75e-35 | 138 |
Find 48 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTATTTAAACGAGGTTT+AGG | 0.262593 | 8_4:+9964296 | None:intergenic |
| CAACGGTTTCTTGTTCTCTT+AGG | 0.312823 | 8_4:+9965862 | None:intergenic |
| TAGCAACAGCTTTGCATTCA+AGG | 0.317563 | 8_4:+9965592 | None:intergenic |
| AAATTGAAATGAAGCTAAAA+AGG | 0.328398 | 8_4:-9965560 | Msa1312740:CDS |
| TCACCAAGAAACAAACAAAA+TGG | 0.336825 | 8_4:-9966050 | Msa1312740:CDS |
| ATGCTATCTTCTCTAGATCT+AGG | 0.383053 | 8_4:+9964578 | None:intergenic |
| ATTCAAGTAGTTGAACTTCA+AGG | 0.388165 | 8_4:+9965892 | None:intergenic |
| GTATGAAGCTGAACAGAATA+AGG | 0.392445 | 8_4:-9965658 | Msa1312740:CDS |
| TTTCTTGGTGAGACAACAAT+TGG | 0.404180 | 8_4:+9966062 | None:intergenic |
| AAACAATACATTATGTTTGA+AGG | 0.419900 | 8_4:-9964492 | Msa1312740:CDS |
| CAATGCCGCAAACAAGTCTA+AGG | 0.449602 | 8_4:-9964681 | Msa1312740:CDS |
| TTAGCTTTCTTCTCAGAAGT+TGG | 0.449990 | 8_4:+9964863 | None:intergenic |
| TCTTCTTATGTAACAGATCC+TGG | 0.460864 | 8_4:-9964755 | Msa1312740:CDS |
| TATGTTTGAAGGAAGAGAGT+AGG | 0.473286 | 8_4:-9964481 | Msa1312740:CDS |
| AAACTTATGAAACTGATAAG+AGG | 0.474850 | 8_4:-9964650 | Msa1312740:CDS |
| GCAAACAAGTCTAAGGTCTT+CGG | 0.481041 | 8_4:-9964674 | Msa1312740:CDS |
| GAAGACCTTAGACTTGTTTG+CGG | 0.484641 | 8_4:+9964676 | None:intergenic |
| CTTCGTTTGCTTGTCTGAGA+CGG | 0.493290 | 8_4:+9965047 | None:intergenic |
| TGCTGATCATGCAAAAGTCT+TGG | 0.505211 | 8_4:-9965733 | Msa1312740:CDS |
| TCGAGACTTGCATACGCTGA+TGG | 0.511527 | 8_4:+9965987 | None:intergenic |
| AAGAACTAGTTTATCAGAGG+TGG | 0.536919 | 8_4:-9964973 | Msa1312740:CDS |
| GCTTAGTGATCTTGAGGATG+AGG | 0.544815 | 8_4:-9965538 | Msa1312740:CDS |
| AGTAGGAGAAATTCTGACGT+TGG | 0.549837 | 8_4:-9964464 | Msa1312740:CDS |
| GCTTAAAGAGTTTCAGTCGA+AGG | 0.552357 | 8_4:-9964439 | Msa1312740:CDS |
| CTTGAATATGCAAATGCTGA+AGG | 0.559363 | 8_4:-9964830 | Msa1312740:CDS |
| GACCAGGCAAAACAGTTGCA+AGG | 0.570716 | 8_4:-9964907 | Msa1312740:CDS |
| GGTCATAATGCTTCAAGAGA+GGG | 0.576856 | 8_4:-9965922 | Msa1312740:CDS |
| AACTTATGAAACTGATAAGA+GGG | 0.578869 | 8_4:-9964649 | Msa1312740:CDS |
| TGAATGCAAAGCTGTTGCTA+AGG | 0.582832 | 8_4:-9965589 | Msa1312740:CDS |
| AGAAACTATCAACCTGGACC+AGG | 0.585124 | 8_4:-9964923 | Msa1312740:CDS |
| AGTCGAAGGAAAAGTGTCGC+AGG | 0.585267 | 8_4:-9964425 | Msa1312740:CDS |
| TTGAAGAACTAGTTTATCAG+AGG | 0.600293 | 8_4:-9964976 | Msa1312740:CDS |
| AAAAGTCTTGGCAGAACTCG+AGG | 0.604906 | 8_4:-9965721 | Msa1312740:CDS |
| GAATTAAGAAACTATCAACC+TGG | 0.607543 | 8_4:-9964929 | Msa1312740:CDS |
| TGGTCATAATGCTTCAAGAG+AGG | 0.612273 | 8_4:-9965923 | Msa1312740:CDS |
| GATCAAATTAGATTTGTCTG+AGG | 0.613564 | 8_4:+9964361 | None:intergenic |
| GTTCAACTACTTGAATATTG+CGG | 0.615028 | 8_4:-9965885 | Msa1312740:CDS |
| GGCATTGTTGAGTCTTACAT+CGG | 0.619385 | 8_4:+9964697 | None:intergenic |
| AAAGATAGTAGAAATCATCT+CGG | 0.634734 | 8_4:-9964626 | Msa1312740:CDS |
| ACCAGGCAAAACAGTTGCAA+GGG | 0.635294 | 8_4:-9964906 | Msa1312740:CDS |
| TAGTGATCTTGAGGATGAGG+CGG | 0.651810 | 8_4:-9965535 | Msa1312740:CDS |
| TACATAAGAAGAAGCTCGTG+AGG | 0.658790 | 8_4:+9964766 | None:intergenic |
| GAATACTCATCACTGTCACC+AGG | 0.666831 | 8_4:+9964737 | None:intergenic |
| GATCAGAAAACTGAAGAACA+TGG | 0.669416 | 8_4:-9965943 | Msa1312740:CDS |
| ATAAGAAGAAGCTCGTGAGG+AGG | 0.682353 | 8_4:+9964769 | None:intergenic |
| GATAGTAGAAATCATCTCGG+TGG | 0.702425 | 8_4:-9964623 | Msa1312740:CDS |
| GATGATCTTCTATTTAAACG+AGG | 0.702467 | 8_4:+9964290 | None:intergenic |
| AGAGAAGATAGCATTAACGA+TGG | 0.708645 | 8_4:-9964569 | Msa1312740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATAAAAATAAT+CGG | + | chr8_4:9965214-9965233 | None:intergenic | 0.0% |
| !! | TATAATAATAAAGATAATTC+TGG | + | chr8_4:9964566-9964585 | None:intergenic | 10.0% |
| !! | ACTTATTATATTATTGTTTA+TGG | - | chr8_4:9965630-9965649 | Msa1312740:CDS | 10.0% |
| !! | TTTGTATAATCTCTTAATTA+AGG | - | chr8_4:9964717-9964736 | Msa1312740:CDS | 15.0% |
| !! | AATGAAACTTTACATTTATA+GGG | + | chr8_4:9964878-9964897 | None:intergenic | 15.0% |
| !! | AAATGAAACTTTACATTTAT+AGG | + | chr8_4:9964879-9964898 | None:intergenic | 15.0% |
| !!! | GTATTTGATTTTAACATTTA+AGG | - | chr8_4:9964976-9964995 | Msa1312740:CDS | 15.0% |
| !!! | TTTTAATGGTTTCTAATTTT+TGG | - | chr8_4:9965254-9965273 | Msa1312740:intron | 15.0% |
| !! | TACAGATCAAATATAGTAAA+TGG | + | chr8_4:9964327-9964346 | None:intergenic | 20.0% |
| !! | TAACAGATAAAGTCAAAAAA+AGG | + | chr8_4:9964357-9964376 | None:intergenic | 20.0% |
| !!! | ACTGTTTAGATTTCTTTTTT+TGG | - | chr8_4:9964452-9964471 | Msa1312740:CDS | 20.0% |
| !!! | TTGCATGTATGTAATTTTAA+TGG | - | chr8_4:9965240-9965259 | Msa1312740:intron | 20.0% |
| !!! | AATTTTTCTGATGAATTTGT+GGG | - | chr8_4:9965286-9965305 | Msa1312740:intron | 20.0% |
| !! | GTAATATCTCACAATATTAA+TGG | - | chr8_4:9965389-9965408 | Msa1312740:intron | 20.0% |
| !!! | TATATCTTATTTTTGCTGAT+AGG | - | chr8_4:9965958-9965977 | Msa1312740:CDS | 20.0% |
| !!! | TTGTAATTTTAATGAACTTG+AGG | - | chr8_4:9966104-9966123 | Msa1312740:intron | 20.0% |
| !!! | AGCTATAAGTTGTTTTTATA+AGG | - | chr8_4:9966266-9966285 | Msa1312740:intron | 20.0% |
| !! | TTCAACTAAAATAAGATTGT+TGG | - | chr8_4:9966308-9966327 | Msa1312740:intron | 20.0% |
| !! | AAATTGAAATGAAGCTAAAA+AGG | - | chr8_4:9966888-9966907 | Msa1312740:intron | 20.0% |
| !! | AAACAATACATTATGTTTGA+AGG | - | chr8_4:9967956-9967975 | Msa1312740:intron | 20.0% |
| ! | AATTGTTATCTAACCATGTT+AGG | + | chr8_4:9964405-9964424 | None:intergenic | 25.0% |
| !!! | ATAGTAACTATCTTTTTCGT+TGG | - | chr8_4:9964524-9964543 | Msa1312740:CDS | 25.0% |
| ! | TTATTATATCTTACCATGCA+TGG | - | chr8_4:9964578-9964597 | Msa1312740:CDS | 25.0% |
| ! | ATTATTAACAAATCCATGCA+TGG | + | chr8_4:9964594-9964613 | None:intergenic | 25.0% |
| ! | ACGTAACAGAAAATATCAAT+AGG | - | chr8_4:9964655-9964674 | Msa1312740:CDS | 25.0% |
| !! | TTTTCAGTCCTTTTAAATTG+AGG | - | chr8_4:9964830-9964849 | Msa1312740:CDS | 25.0% |
| ! | TTCAACATGATAAAATAGAG+AGG | - | chr8_4:9964917-9964936 | Msa1312740:CDS | 25.0% |
| !!! | TTCATATACAGTTTTGTTAG+AGG | - | chr8_4:9965104-9965123 | Msa1312740:intron | 25.0% |
| !!! | TTTCTAATTTTTGGTTGTGA+TGG | - | chr8_4:9965263-9965282 | Msa1312740:intron | 25.0% |
| !! | GAATTTTTCTGATGAATTTG+TGG | - | chr8_4:9965285-9965304 | Msa1312740:intron | 25.0% |
| !!! | ATTTGTTGTGTTTATAGGTA+TGG | - | chr8_4:9965309-9965328 | Msa1312740:intron | 25.0% |
| !!! | TCTCTCATTTTAGAACAAAA+AGG | - | chr8_4:9965526-9965545 | Msa1312740:intron | 25.0% |
| ! | TCATTCAGAAGGAAATAATT+TGG | - | chr8_4:9965887-9965906 | Msa1312740:CDS | 25.0% |
| ! | ATCAACAATACAACAAGATT+TGG | + | chr8_4:9966074-9966093 | None:intergenic | 25.0% |
| ! | CACTTATATGATAAACGTTT+AGG | + | chr8_4:9966188-9966207 | None:intergenic | 25.0% |
| ! | TGATTATGCATAAGCTATTT+CGG | - | chr8_4:9966206-9966225 | Msa1312740:intron | 25.0% |
| !!! | GTTGTTTTTATAAGGTATCT+TGG | - | chr8_4:9966274-9966293 | Msa1312740:intron | 25.0% |
| ! | CAGATTGAAAATAAGTAACA+TGG | - | chr8_4:9966625-9966644 | Msa1312740:intron | 25.0% |
| ! | ATTGAAAATAAGTAACATGG+AGG | - | chr8_4:9966628-9966647 | Msa1312740:intron | 25.0% |
| ! | CGGTTATAATTATCAATCTA+AGG | - | chr8_4:9967052-9967071 | Msa1312740:intron | 25.0% |
| !!! | ACAAGTTTTTTATCCAAACA+TGG | + | chr8_4:9967078-9967097 | None:intergenic | 25.0% |
| ! | AAACTTATGAAACTGATAAG+AGG | - | chr8_4:9967798-9967817 | Msa1312740:intron | 25.0% |
| ! | AACTTATGAAACTGATAAGA+GGG | - | chr8_4:9967799-9967818 | Msa1312740:intron | 25.0% |
| ! | AAAGATAGTAGAAATCATCT+CGG | - | chr8_4:9967822-9967841 | Msa1312740:intron | 25.0% |
| !!! | AATTGAATTTTGAGTCATGT+CGG | + | chr8_4:9967931-9967950 | None:intergenic | 25.0% |
| TATAATTGATGCATCCAAAC+CGG | - | chr8_4:9964286-9964305 | Msa1312740:CDS | 30.0% | |
| CCATGTTAGGTGTTTAATTA+TGG | + | chr8_4:9964392-9964411 | None:intergenic | 30.0% | |
| CCATAATTAAACACCTAACA+TGG | - | chr8_4:9964389-9964408 | Msa1312740:CDS | 30.0% | |
| ACAAAAAAGTTTACGTGTGT+TGG | - | chr8_4:9964478-9964497 | Msa1312740:CDS | 30.0% | |
| ! | TATCAATAGGCATTGTTTGT+TGG | - | chr8_4:9964668-9964687 | Msa1312740:CDS | 30.0% |
| TACCCAATTGTTCTATGAAA+AGG | - | chr8_4:9964749-9964768 | Msa1312740:CDS | 30.0% | |
| ! | GTCCTTTTCATAGAACAATT+GGG | + | chr8_4:9964754-9964773 | None:intergenic | 30.0% |
| ! | TGTCCTTTTCATAGAACAAT+TGG | + | chr8_4:9964755-9964774 | None:intergenic | 30.0% |
| ! | TCCTTTTAAATTGAGGTACA+AGG | - | chr8_4:9964837-9964856 | Msa1312740:CDS | 30.0% |
| TCCTTGTACCTCAATTTAAA+AGG | + | chr8_4:9964841-9964860 | None:intergenic | 30.0% | |
| CAAAACTGTATATGAAGCAA+TGG | + | chr8_4:9965100-9965119 | None:intergenic | 30.0% | |
| !!! | ATATACAGTTTTGTTAGAGG+TGG | - | chr8_4:9965107-9965126 | Msa1312740:intron | 30.0% |
| TAATAAATTTGATGTCGCAG+AGG | - | chr8_4:9965184-9965203 | Msa1312740:intron | 30.0% | |
| GAAAACATAGTACCAATTTC+TGG | + | chr8_4:9965336-9965355 | None:intergenic | 30.0% | |
| ! | TTGGTACTATGTTTTCTTCA+TGG | - | chr8_4:9965340-9965359 | Msa1312740:intron | 30.0% |
| CTCACAATATTAATGGAGAA+AGG | - | chr8_4:9965396-9965415 | Msa1312740:intron | 30.0% | |
| TGGAGAAAGGAATATTTACA+AGG | - | chr8_4:9965409-9965428 | Msa1312740:intron | 30.0% | |
| ! | TTGATAGCAAGAGATGATAA+AGG | - | chr8_4:9965441-9965460 | Msa1312740:intron | 30.0% |
| AAACCACATTTGAGTAGAAT+AGG | + | chr8_4:9965474-9965493 | None:intergenic | 30.0% | |
| TATTCTACTCAAATGTGGTT+TGG | - | chr8_4:9965473-9965492 | Msa1312740:intron | 30.0% | |
| AAAAGAAACAAACCTGAAGA+GGG | + | chr8_4:9965573-9965592 | None:intergenic | 30.0% | |
| ATACTAGCATAGAGACTATT+TGG | + | chr8_4:9965735-9965754 | None:intergenic | 30.0% | |
| ! | GTATGTATGATGTTTTTCTC+AGG | - | chr8_4:9965807-9965826 | Msa1312740:intron | 30.0% |
| ATGAATGTTGCAAAAACTTG+AGG | + | chr8_4:9965871-9965890 | None:intergenic | 30.0% | |
| ! | TTTTGCAACATTCATTCAGA+AGG | - | chr8_4:9965876-9965895 | Msa1312740:CDS | 30.0% |
| ! | TGTTGGATTTCTTTGATAAC+AGG | - | chr8_4:9966325-9966344 | Msa1312740:intron | 30.0% |
| TCACCAAGAAACAAACAAAA+TGG | - | chr8_4:9966398-9966417 | Msa1312740:intron | 30.0% | |
| !! | TCTCCATTTTGTTTGTTTCT+TGG | + | chr8_4:9966404-9966423 | None:intergenic | 30.0% |
| ATTCAAGTAGTTGAACTTCA+AGG | + | chr8_4:9966559-9966578 | None:intergenic | 30.0% | |
| GTTCAACTACTTGAATATTG+CGG | - | chr8_4:9966563-9966582 | Msa1312740:intron | 30.0% | |
| ! | ATCTAATTTGAGATTGCAGA+TGG | - | chr8_4:9966949-9966968 | Msa1312740:intron | 30.0% |
| TTCTGACTTAGCTAAAAGAT+TGG | - | chr8_4:9966976-9966995 | Msa1312740:intron | 30.0% | |
| AAGATCCAGAAGTAATAATG+CGG | - | chr8_4:9967032-9967051 | Msa1312740:intron | 30.0% | |
| TATAACCGCATTATTACTTC+TGG | + | chr8_4:9967040-9967059 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr8_4:9967292-9967311 | Msa1312740:intron | 30.0% | |
| GTTATTCAAGAAAGAGCAAA+GGG | + | chr8_4:9967319-9967338 | None:intergenic | 30.0% | |
| AGTTATTCAAGAAAGAGCAA+AGG | + | chr8_4:9967320-9967339 | None:intergenic | 30.0% | |
| !!! | TCACCTTTTATTTTGAATGC+AGG | - | chr8_4:9967353-9967372 | Msa1312740:intron | 30.0% |
| ! | TTGAAGAACTAGTTTATCAG+AGG | - | chr8_4:9967472-9967491 | Msa1312740:intron | 30.0% |
| GAATTAAGAAACTATCAACC+TGG | - | chr8_4:9967519-9967538 | Msa1312740:intron | 30.0% | |
| !!! | CTGATTTTGATTCTGATCAA+TGG | - | chr8_4:9967655-9967674 | Msa1312740:intron | 30.0% |
| GATCAAATTAGATTTGTCTG+AGG | + | chr8_4:9968090-9968109 | None:intergenic | 30.0% | |
| CTTCTATTTAAACGAGGTTT+AGG | + | chr8_4:9968155-9968174 | None:intergenic | 30.0% | |
| GATGATCTTCTATTTAAACG+AGG | + | chr8_4:9968161-9968180 | None:intergenic | 30.0% | |
| ! | TTTCCAATTCTTTTCCGGTT+TGG | + | chr8_4:9964303-9964322 | None:intergenic | 35.0% |
| ! | ATGGCTTTCCAATTCTTTTC+CGG | + | chr8_4:9964308-9964327 | None:intergenic | 35.0% |
| TGTGTTATGATGTTGTCTTG+TGG | + | chr8_4:9964803-9964822 | None:intergenic | 35.0% | |
| GTACAAGGAACATTTGATCA+TGG | - | chr8_4:9964852-9964871 | Msa1312740:CDS | 35.0% | |
| !! | GTGGGATTTGTTGTGTTTAT+AGG | - | chr8_4:9965304-9965323 | Msa1312740:intron | 35.0% |
| TATAGGTATGGACCAGAAAT+TGG | - | chr8_4:9965321-9965340 | Msa1312740:intron | 35.0% | |
| AAGCCTATTCTACTCAAATG+TGG | - | chr8_4:9965468-9965487 | Msa1312740:intron | 35.0% | |
| AGAGAAAAGAAAACCAGCAA+AGG | + | chr8_4:9965511-9965530 | None:intergenic | 35.0% | |
| GAAAAGAAACAAACCTGAAG+AGG | + | chr8_4:9965574-9965593 | None:intergenic | 35.0% | |
| AGACTATTTGGAAGAGCTTA+TGG | + | chr8_4:9965723-9965742 | None:intergenic | 35.0% | |
| TTGACTTAACTTCACTAGCA+TGG | + | chr8_4:9965833-9965852 | None:intergenic | 35.0% | |
| ATGCTAGTGAAGTTAAGTCA+AGG | - | chr8_4:9965832-9965851 | Msa1312740:intron | 35.0% | |
| TTTCTTGGTGAGACAACAAT+TGG | + | chr8_4:9966389-9966408 | None:intergenic | 35.0% | |
| ! | TTTTCTGATCTCTTGCTCAT+AGG | + | chr8_4:9966495-9966514 | None:intergenic | 35.0% |
| GATCAGAAAACTGAAGAACA+TGG | - | chr8_4:9966505-9966524 | Msa1312740:intron | 35.0% | |
| AGAACAAGAAACCGTTGTAA+TGG | - | chr8_4:9966592-9966611 | Msa1312740:intron | 35.0% | |
| !!! | GTTTTGAAGCTCCATTACAA+CGG | + | chr8_4:9966606-9966625 | None:intergenic | 35.0% |
| ATTGTAGTGTCTCAAGCTTT+AGG | + | chr8_4:9966667-9966686 | None:intergenic | 35.0% | |
| AGACACTACAATCTGAGAAT+AGG | - | chr8_4:9966675-9966694 | Msa1312740:intron | 35.0% | |
| ATCTGAGAATAGGAGATTAG+AGG | - | chr8_4:9966685-9966704 | Msa1312740:intron | 35.0% | |
| GTATGAAGCTGAACAGAATA+AGG | - | chr8_4:9966790-9966809 | Msa1312740:intron | 35.0% | |
| ACAAAAAGTTTCGAAGTTGC+AGG | - | chr8_4:9966832-9966851 | Msa1312740:intron | 35.0% | |
| AAAAAGGCTTAGTGATCTTG+AGG | - | chr8_4:9966904-9966923 | Msa1312740:intron | 35.0% | |
| ! | TATCAATCTAAGGCCATGTT+TGG | - | chr8_4:9967062-9967081 | Msa1312740:intron | 35.0% |
| GCTCTCTTAAATAGTCTCAT+AGG | - | chr8_4:9967248-9967267 | Msa1312740:intron | 35.0% | |
| CTGCCTGCATTCAAAATAAA+AGG | + | chr8_4:9967359-9967378 | None:intergenic | 35.0% | |
| ! | AAGAACTAGTTTATCAGAGG+TGG | - | chr8_4:9967475-9967494 | Msa1312740:intron | 35.0% |
| ! | TTAGCTTTCTTCTCAGAAGT+TGG | + | chr8_4:9967588-9967607 | None:intergenic | 35.0% |
| CTTGAATATGCAAATGCTGA+AGG | - | chr8_4:9967618-9967637 | Msa1312740:intron | 35.0% | |
| TCTTCTTATGTAACAGATCC+TGG | - | chr8_4:9967693-9967712 | Msa1312740:intron | 35.0% | |
| ATGCTATCTTCTCTAGATCT+AGG | + | chr8_4:9967873-9967892 | None:intergenic | 35.0% | |
| AGAGAAGATAGCATTAACGA+TGG | - | chr8_4:9967879-9967898 | Msa1312740:intron | 35.0% | |
| TATGTTTGAAGGAAGAGAGT+AGG | - | chr8_4:9967967-9967986 | Msa1312740:intron | 35.0% | |
| CATCCAAACCGGAAAAGAAT+TGG | - | chr8_4:9964297-9964316 | Msa1312740:CDS | 40.0% | |
| ! | CGTGTGTTGGTATTACTGTT+TGG | - | chr8_4:9964491-9964510 | Msa1312740:CDS | 40.0% |
| TTTCGTTGGTCATGAGTAAG+TGG | - | chr8_4:9964538-9964557 | Msa1312740:CDS | 40.0% | |
| TTCGTTGGTCATGAGTAAGT+GGG | - | chr8_4:9964539-9964558 | Msa1312740:CDS | 40.0% | |
| ! | ACTCAAATGTGGTTTGGCTT+TGG | - | chr8_4:9965479-9965498 | Msa1312740:intron | 40.0% |
| ! | TGCATAAGCTATTTCGGTAC+AGG | - | chr8_4:9966212-9966231 | Msa1312740:intron | 40.0% |
| GGAAGAAACATGCATCAACA+AGG | - | chr8_4:9966346-9966365 | Msa1312740:intron | 40.0% | |
| AGAAACATGCATCAACAAGG+TGG | - | chr8_4:9966349-9966368 | Msa1312740:intron | 40.0% | |
| TGGTCATAATGCTTCAAGAG+AGG | - | chr8_4:9966525-9966544 | Msa1312740:intron | 40.0% | |
| GGTCATAATGCTTCAAGAGA+GGG | - | chr8_4:9966526-9966545 | Msa1312740:intron | 40.0% | |
| CAACGGTTTCTTGTTCTCTT+AGG | + | chr8_4:9966589-9966608 | None:intergenic | 40.0% | |
| TGCTGATCATGCAAAAGTCT+TGG | - | chr8_4:9966715-9966734 | Msa1312740:intron | 40.0% | |
| TAGCAACAGCTTTGCATTCA+AGG | + | chr8_4:9966859-9966878 | None:intergenic | 40.0% | |
| TGAATGCAAAGCTGTTGCTA+AGG | - | chr8_4:9966859-9966878 | Msa1312740:intron | 40.0% | |
| !! | CTTCTAGAACAGCATTTGCA+AGG | + | chr8_4:9967015-9967034 | None:intergenic | 40.0% |
| TAAGCTCTTCAGGATAGCTT+AGG | + | chr8_4:9967201-9967220 | None:intergenic | 40.0% | |
| AAGCTATCCTGAAGAGCTTA+TGG | - | chr8_4:9967201-9967220 | Msa1312740:intron | 40.0% | |
| TACATAAGAAGAAGCTCGTG+AGG | + | chr8_4:9967685-9967704 | None:intergenic | 40.0% | |
| !! | ACATCGGACGAATTTTCAAG+AGG | + | chr8_4:9967738-9967757 | None:intergenic | 40.0% |
| GGCATTGTTGAGTCTTACAT+CGG | + | chr8_4:9967754-9967773 | None:intergenic | 40.0% | |
| ! | GAAGACCTTAGACTTGTTTG+CGG | + | chr8_4:9967775-9967794 | None:intergenic | 40.0% |
| ! | GCAAACAAGTCTAAGGTCTT+CGG | - | chr8_4:9967774-9967793 | Msa1312740:intron | 40.0% |
| GATAGTAGAAATCATCTCGG+TGG | - | chr8_4:9967825-9967844 | Msa1312740:intron | 40.0% | |
| AGTAGGAGAAATTCTGACGT+TGG | - | chr8_4:9967984-9968003 | Msa1312740:intron | 40.0% | |
| GCTTAAAGAGTTTCAGTCGA+AGG | - | chr8_4:9968009-9968028 | Msa1312740:intron | 40.0% | |
| AACCTGAAGAGGGTCCTTTA+GGG | + | chr8_4:9965563-9965582 | None:intergenic | 45.0% | |
| AAACCTGAAGAGGGTCCTTT+AGG | + | chr8_4:9965564-9965583 | None:intergenic | 45.0% | |
| ! | GAATAGGAGATTAGAGGCAC+AGG | - | chr8_4:9966691-9966710 | Msa1312740:intron | 45.0% |
| AAAAGTCTTGGCAGAACTCG+AGG | - | chr8_4:9966727-9966746 | Msa1312740:intron | 45.0% | |
| GCTTAGTGATCTTGAGGATG+AGG | - | chr8_4:9966910-9966929 | Msa1312740:intron | 45.0% | |
| TAGTGATCTTGAGGATGAGG+CGG | - | chr8_4:9966913-9966932 | Msa1312740:intron | 45.0% | |
| GACATGTCCATAAGCTCTTC+AGG | + | chr8_4:9967211-9967230 | None:intergenic | 45.0% | |
| CTCATAGGTGCTTATGCTAG+TGG | - | chr8_4:9967263-9967282 | Msa1312740:intron | 45.0% | |
| AAAGAGCAAAGGGACCTGTT+TGG | + | chr8_4:9967309-9967328 | None:intergenic | 45.0% | |
| AATGCAGGCAGATGCTCTAA+GGG | - | chr8_4:9967368-9967387 | Msa1312740:intron | 45.0% | |
| CTTCGTTTGCTTGTCTGAGA+CGG | + | chr8_4:9967404-9967423 | None:intergenic | 45.0% | |
| AGAAACTATCAACCTGGACC+AGG | - | chr8_4:9967525-9967544 | Msa1312740:intron | 45.0% | |
| ACCAGGCAAAACAGTTGCAA+GGG | - | chr8_4:9967542-9967561 | Msa1312740:intron | 45.0% | |
| ATAAGAAGAAGCTCGTGAGG+AGG | + | chr8_4:9967682-9967701 | None:intergenic | 45.0% | |
| GAATACTCATCACTGTCACC+AGG | + | chr8_4:9967714-9967733 | None:intergenic | 45.0% | |
| CAATGCCGCAAACAAGTCTA+AGG | - | chr8_4:9967767-9967786 | Msa1312740:intron | 45.0% | |
| !!! | ATTTTTATTTTTTTTTAAAG+TGG | - | chr8_4:9965217-9965236 | Msa1312740:intron | 5.0% |
| !! | GCTTTGGCTCTTACCTTTGC+TGG | - | chr8_4:9965495-9965514 | Msa1312740:intron | 50.0% |
| AGGATCAAGCCTTCCCCTAA+AGG | - | chr8_4:9965546-9965565 | Msa1312740:CDS | 50.0% | |
| ACCTGAAGAGGGTCCTTTAG+GGG | + | chr8_4:9965562-9965581 | None:intergenic | 50.0% | |
| TCGAGACTTGCATACGCTGA+TGG | + | chr8_4:9966464-9966483 | None:intergenic | 50.0% | |
| GAATGCAGGCAGATGCTCTA+AGG | - | chr8_4:9967367-9967386 | Msa1312740:intron | 50.0% | |
| GACCAGGCAAAACAGTTGCA+AGG | - | chr8_4:9967541-9967560 | Msa1312740:intron | 50.0% | |
| ! | TCCCTTGCAACTGTTTTGCC+TGG | + | chr8_4:9967546-9967565 | None:intergenic | 50.0% |
| !! | AGTCGAAGGAAAAGTGTCGC+AGG | - | chr8_4:9968023-9968042 | Msa1312740:intron | 50.0% |
| ! | GAAGAGGGTCCTTTAGGGGA+AGG | + | chr8_4:9965558-9965577 | None:intergenic | 55.0% |
| TCCCCTAAAGGACCCTCTTC+AGG | - | chr8_4:9965558-9965577 | Msa1312740:CDS | 55.0% | |
| AGGATGAGGCGGAACAGTGT+AGG | - | chr8_4:9966924-9966943 | Msa1312740:intron | 55.0% | |
| ! | GCAACTGTTTTGCCTGGTCC+AGG | + | chr8_4:9967540-9967559 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 9964271 | 9968199 | 9964271 | ID=Msa1312740;Name=Msa1312740 |
| chr8_4 | mRNA | 9964271 | 9968199 | 9964271 | ID=Msa1312740-mRNA-1;Parent=Msa1312740;Name=Msa1312740-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.75|0|0|4|0|423 |
| chr8_4 | exon | 9968195 | 9968199 | 9968195 | ID=Msa1312740-mRNA-1:exon:3752;Parent=Msa1312740-mRNA-1 |
| chr8_4 | exon | 9965863 | 9966091 | 9965863 | ID=Msa1312740-mRNA-1:exon:3751;Parent=Msa1312740-mRNA-1 |
| chr8_4 | exon | 9965531 | 9965757 | 9965531 | ID=Msa1312740-mRNA-1:exon:3750;Parent=Msa1312740-mRNA-1 |
| chr8_4 | exon | 9964271 | 9965081 | 9964271 | ID=Msa1312740-mRNA-1:exon:3749;Parent=Msa1312740-mRNA-1 |
| chr8_4 | CDS | 9968195 | 9968199 | 9968195 | ID=Msa1312740-mRNA-1:cds;Parent=Msa1312740-mRNA-1 |
| chr8_4 | CDS | 9965863 | 9966091 | 9965863 | ID=Msa1312740-mRNA-1:cds;Parent=Msa1312740-mRNA-1 |
| chr8_4 | CDS | 9965531 | 9965757 | 9965531 | ID=Msa1312740-mRNA-1:cds;Parent=Msa1312740-mRNA-1 |
| chr8_4 | CDS | 9964271 | 9965081 | 9964271 | ID=Msa1312740-mRNA-1:cds;Parent=Msa1312740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
