Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274730 | sp|Q9LI74|CHUP1_ARATH | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 4.63e-62 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274730 | G7LHE1 | 91.414 | 594 | 49 | 2 | 1 | 592 | 1 | 594 | 0.0 | 1081 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223380 | Msa1274730 | 0.820630 | 6.198677e-53 | -8.615850e-47 |
| Msa0233610 | Msa1274730 | 0.823961 | 1.044669e-53 | -8.615850e-47 |
| Msa1274730 | Msa1312740 | 0.930705 | 1.109455e-93 | -8.615850e-47 |
| Msa1180420 | Msa1274730 | 0.823059 | 1.698535e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274730 | MtrunA17_Chr8g0340991 | 91.414 | 594 | 49 | 2 | 1 | 592 | 1 | 594 | 0.0 | 1081 |
| Msa1274730 | MtrunA17_Chr2g0330791 | 51.329 | 602 | 211 | 18 | 12 | 590 | 2 | 544 | 9.24e-171 | 496 |
| Msa1274730 | MtrunA17_Chr1g0198861 | 38.281 | 384 | 201 | 8 | 112 | 470 | 96 | 468 | 2.79e-60 | 216 |
| Msa1274730 | MtrunA17_Chr5g0422391 | 40.000 | 320 | 180 | 3 | 120 | 435 | 108 | 419 | 3.43e-60 | 216 |
| Msa1274730 | MtrunA17_Chr1g0179671 | 24.862 | 362 | 227 | 6 | 20 | 372 | 11 | 336 | 6.33e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274730 | AT1G52080.2 | 40.331 | 605 | 299 | 16 | 12 | 589 | 2 | 571 | 8.98e-110 | 341 |
| Msa1274730 | AT1G52080.1 | 40.331 | 605 | 299 | 16 | 12 | 589 | 2 | 571 | 8.98e-110 | 341 |
| Msa1274730 | AT3G25690.5 | 43.854 | 301 | 157 | 4 | 139 | 435 | 132 | 424 | 4.45e-63 | 224 |
| Msa1274730 | AT3G25690.1 | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 4.70e-63 | 224 |
| Msa1274730 | AT3G25690.2 | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 4.70e-63 | 224 |
| Msa1274730 | AT3G25690.6 | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 4.70e-63 | 224 |
| Msa1274730 | AT3G25690.4 | 43.854 | 301 | 157 | 4 | 139 | 435 | 130 | 422 | 4.70e-63 | 224 |
| Msa1274730 | AT3G25690.3 | 41.597 | 238 | 127 | 3 | 202 | 435 | 52 | 281 | 2.66e-43 | 166 |
Find 90 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCAGAAGGAAATAATT+TGG | 0.233335 | 8_3:+8583261 | Msa1274730:CDS |
| GCTTTGGCTCTTACCTTTGC+TGG | 0.243022 | 8_3:+8582905 | Msa1274730:CDS |
| TTATGCATGTGTAATAAATA+AGG | 0.248157 | 8_3:+8585667 | Msa1274730:three_prime_UTR |
| GAAAACATAGAGCCAATTTC+TGG | 0.260586 | 8_3:-8582743 | None:intergenic |
| CTTCTATTTAAACGAGGTTT+AGG | 0.262593 | 8_3:-8585526 | None:intergenic |
| AAACCTGAAGAGGGTCCTTT+AGG | 0.264382 | 8_3:-8582971 | None:intergenic |
| TATTCCAAATTATTTCCTTC+TGG | 0.272532 | 8_3:-8583265 | None:intergenic |
| GTAATATCTCACAATATTAA+TGG | 0.280466 | 8_3:+8582799 | Msa1274730:exon |
| TATAGGTATGGACCAGAAAT+TGG | 0.281495 | 8_3:+8582731 | Msa1274730:intron |
| TCCCCTAAAGGACCCTCTTC+AGG | 0.287693 | 8_3:+8582968 | Msa1274730:CDS |
| CAACGGTTTCTTGTTCTCTT+AGG | 0.312823 | 8_3:-8583960 | None:intergenic |
| TAGCAACAGCTTTGCATTCA+AGG | 0.317563 | 8_3:-8584230 | None:intergenic |
| GAATGCAGGCAGATGCTCTA+AGG | 0.321147 | 8_3:+8584741 | Msa1274730:intron |
| ACTCAAATGTGGTTTGGCTT+TGG | 0.325603 | 8_3:+8582889 | Msa1274730:CDS |
| AAATTGAAATGAAGCTAAAA+AGG | 0.328398 | 8_3:+8584262 | Msa1274730:CDS |
| AACCTGAAGAGGGTCCTTTA+GGG | 0.331000 | 8_3:-8582970 | None:intergenic |
| ATTGTAGTGTCTCAAGCTTT+AGG | 0.333146 | 8_3:-8584038 | None:intergenic |
| TCACCAAGAAACAAACAAAA+TGG | 0.336825 | 8_3:+8583772 | Msa1274730:CDS |
| CTGATATGGTATATCAGAAT+TGG | 0.370741 | 8_3:-8585639 | None:intergenic |
| AAACCACATTTGAGTAGAAT+AGG | 0.375283 | 8_3:-8582881 | None:intergenic |
| ATGCTATCTTCTCTAGATCT+AGG | 0.383053 | 8_3:-8585244 | None:intergenic |
| TATTCTACTCAAATGTGGTT+TGG | 0.385617 | 8_3:+8582883 | Msa1274730:CDS |
| TTCTGACTTAGCTAAAAGAT+TGG | 0.387705 | 8_3:+8584350 | Msa1274730:CDS |
| ATTCAAGTAGTTGAACTTCA+AGG | 0.388165 | 8_3:-8583930 | None:intergenic |
| GTATGAAGCTGAACAGAATA+AGG | 0.392445 | 8_3:+8584164 | Msa1274730:CDS |
| CATGCATAAATAATCTGATA+TGG | 0.392871 | 8_3:-8585653 | None:intergenic |
| TTTCTTGGTGAGACAACAAT+TGG | 0.404180 | 8_3:-8583760 | None:intergenic |
| AAACAATACATTATGTTTGA+AGG | 0.419900 | 8_3:+8585330 | Msa1274730:CDS |
| TTGATAGCAAGAGATGATAA+AGG | 0.445996 | 8_3:+8582851 | Msa1274730:CDS |
| GAAAAGAAACAAACCTGAAG+AGG | 0.448652 | 8_3:-8582981 | None:intergenic |
| CAATGCCGCAAACAAGTCTA+AGG | 0.449602 | 8_3:+8585141 | Msa1274730:CDS |
| TTAGCTTTCTTCTCAGAAGT+TGG | 0.449990 | 8_3:-8584959 | None:intergenic |
| TCTTCTTATGTAACAGATCC+TGG | 0.460864 | 8_3:+8585067 | Msa1274730:CDS |
| AGGATCAAGCCTTCCCCTAA+AGG | 0.467850 | 8_3:+8582956 | Msa1274730:CDS |
| AGACACTACAATCTGAGAAT+AGG | 0.468013 | 8_3:+8584049 | Msa1274730:CDS |
| ATCTGAGAATAGGAGATTAG+AGG | 0.469882 | 8_3:+8584059 | Msa1274730:CDS |
| TATGTTTGAAGGAAGAGAGT+AGG | 0.473286 | 8_3:+8585341 | Msa1274730:CDS |
| AAACTTATGAAACTGATAAG+AGG | 0.474850 | 8_3:+8585172 | Msa1274730:CDS |
| AGAACAAGAAACCGTTGTAA+TGG | 0.477590 | 8_3:+8583966 | Msa1274730:CDS |
| GCAAACAAGTCTAAGGTCTT+CGG | 0.481041 | 8_3:+8585148 | Msa1274730:CDS |
| GAAGACCTTAGACTTGTTTG+CGG | 0.484641 | 8_3:-8585146 | None:intergenic |
| TTGAATTAACTTCACTAGCA+TGG | 0.486573 | 8_3:-8583204 | None:intergenic |
| CTTCGTTTGCTTGTCTGAGA+CGG | 0.493290 | 8_3:-8584775 | None:intergenic |
| GAATAGGAGATTAGAGGCAC+AGG | 0.496074 | 8_3:+8584065 | Msa1274730:CDS |
| CTCACAATATTAATGGAGAA+AGG | 0.496677 | 8_3:+8582806 | Msa1274730:exon |
| TGCTGATCATGCAAAAGTCT+TGG | 0.505211 | 8_3:+8584089 | Msa1274730:CDS |
| TCGAGACTTGCATACGCTGA+TGG | 0.511527 | 8_3:-8583835 | None:intergenic |
| ATCTAATTTGAGATTGCAGA+TGG | 0.524116 | 8_3:+8584323 | Msa1274730:CDS |
| TGGAGAAAGGAATATTTACA+AGG | 0.530878 | 8_3:+8582819 | Msa1274730:CDS |
| AAGAACTAGTTTATCAGAGG+TGG | 0.536919 | 8_3:+8584849 | Msa1274730:CDS |
| GCTTAGTGATCTTGAGGATG+AGG | 0.544815 | 8_3:+8584284 | Msa1274730:CDS |
| AGTAGGAGAAATTCTGACGT+TGG | 0.549837 | 8_3:+8585358 | Msa1274730:CDS |
| GCTTAAAGAGTTTCAGTCGA+AGG | 0.552357 | 8_3:+8585383 | Msa1274730:CDS |
| AATGCAGGCAGATGCTCTAA+GGG | 0.558679 | 8_3:+8584742 | Msa1274730:intron |
| GAAGAGGGTCCTTTAGGGGA+AGG | 0.559049 | 8_3:-8582965 | None:intergenic |
| CTTGAATATGCAAATGCTGA+AGG | 0.559363 | 8_3:+8584992 | Msa1274730:CDS |
| GACCAGGCAAAACAGTTGCA+AGG | 0.570716 | 8_3:+8584915 | Msa1274730:CDS |
| GGTCATAATGCTTCAAGAGA+GGG | 0.576856 | 8_3:+8583900 | Msa1274730:CDS |
| AGAGAAGAGAAAACCAGCAA+AGG | 0.577244 | 8_3:-8582918 | None:intergenic |
| CTTCTAGAACAGCATTTGCA+AGG | 0.578158 | 8_3:-8584386 | None:intergenic |
| AACTTATGAAACTGATAAGA+GGG | 0.578869 | 8_3:+8585173 | Msa1274730:CDS |
| CAGATTGAAAATAAGTAACA+TGG | 0.578965 | 8_3:+8583999 | Msa1274730:CDS |
| TGAATGCAAAGCTGTTGCTA+AGG | 0.582832 | 8_3:+8584233 | Msa1274730:CDS |
| AAACCTATTCTACTCAAATG+TGG | 0.584446 | 8_3:+8582878 | Msa1274730:CDS |
| AGGATGAGGCGGAACAGTGT+AGG | 0.584999 | 8_3:+8584298 | Msa1274730:CDS |
| AGAAACTATCAACCTGGACC+AGG | 0.585124 | 8_3:+8584899 | Msa1274730:CDS |
| AGTCGAAGGAAAAGTGTCGC+AGG | 0.585267 | 8_3:+8585397 | Msa1274730:CDS |
| TTGAAGAACTAGTTTATCAG+AGG | 0.600293 | 8_3:+8584846 | Msa1274730:CDS |
| AAAAGTCTTGGCAGAACTCG+AGG | 0.604906 | 8_3:+8584101 | Msa1274730:CDS |
| GAATTAAGAAACTATCAACC+TGG | 0.607543 | 8_3:+8584893 | Msa1274730:CDS |
| TGGTCATAATGCTTCAAGAG+AGG | 0.612273 | 8_3:+8583899 | Msa1274730:CDS |
| GATCAAATTAGATTTGTCTG+AGG | 0.613564 | 8_3:-8585461 | None:intergenic |
| GTTCAACTACTTGAATATTG+CGG | 0.615028 | 8_3:+8583937 | Msa1274730:CDS |
| AAAAGAAACAAACCTGAAGA+GGG | 0.615551 | 8_3:-8582980 | None:intergenic |
| GGCATTGTTGAGTCTTACAT+CGG | 0.619385 | 8_3:-8585125 | None:intergenic |
| AAAGATAGTAGAAATCATCT+CGG | 0.634734 | 8_3:+8585196 | Msa1274730:CDS |
| ACCAGGCAAAACAGTTGCAA+GGG | 0.635294 | 8_3:+8584916 | Msa1274730:CDS |
| TTCAACATGATAAAATAGAG+AGG | 0.635473 | 8_3:+8582320 | None:intergenic |
| ACCTGAAGAGGGTCCTTTAG+GGG | 0.638535 | 8_3:-8582969 | None:intergenic |
| GGAAGAAACATGCATCAACA+AGG | 0.644380 | 8_3:+8583720 | Msa1274730:intron |
| TAGTGATCTTGAGGATGAGG+CGG | 0.651810 | 8_3:+8584287 | Msa1274730:CDS |
| TACATAAGAAGAAGCTCGTG+AGG | 0.658790 | 8_3:-8585056 | None:intergenic |
| GAATACTCATCACTGTCACC+AGG | 0.666831 | 8_3:-8585085 | None:intergenic |
| GATCAGAAAACTGAAGAACA+TGG | 0.669416 | 8_3:+8583879 | Msa1274730:CDS |
| ATAAGAAGAAGCTCGTGAGG+AGG | 0.682353 | 8_3:-8585053 | None:intergenic |
| ATTGAAAATAAGTAACATGG+AGG | 0.698457 | 8_3:+8584002 | Msa1274730:CDS |
| GATAGTAGAAATCATCTCGG+TGG | 0.702425 | 8_3:+8585199 | Msa1274730:CDS |
| GATGATCTTCTATTTAAACG+AGG | 0.702467 | 8_3:-8585532 | None:intergenic |
| AGAGAAGATAGCATTAACGA+TGG | 0.708645 | 8_3:+8585253 | Msa1274730:CDS |
| AGAAACATGCATCAACAAGG+TGG | 0.720923 | 8_3:+8583723 | Msa1274730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAATAAAAATAAT+AGG | - | chr8_3:8582625-8582644 | None:intergenic | 0.0% |
| !! | ACTTATTATATTATTGTTTA+TGG | + | chr8_3:8583040-8583059 | Msa1274730:intron | 10.0% |
| !!! | GTATTTGATTTTAACATTTA+AGG | + | chr8_3:8582379-8582398 | Msa1274730:five_prime_UTR | 15.0% |
| !!! | TTTTAATGGTTTCTAATTTT+TGG | + | chr8_3:8582664-8582683 | Msa1274730:intron | 15.0% |
| !!! | AATTTTTCTGATTAATTTGT+GGG | + | chr8_3:8582696-8582715 | Msa1274730:intron | 15.0% |
| !!! | TTGCATGTATGTAATTTTAA+TGG | + | chr8_3:8582650-8582669 | Msa1274730:intron | 20.0% |
| !!! | GAATTTTTCTGATTAATTTG+TGG | + | chr8_3:8582695-8582714 | Msa1274730:intron | 20.0% |
| !!! | ATTTGTTATGTTTATAGGTA+TGG | + | chr8_3:8582719-8582738 | Msa1274730:intron | 20.0% |
| !! | GTAATATCTCACAATATTAA+TGG | + | chr8_3:8582799-8582818 | Msa1274730:exon | 20.0% |
| !!! | AATTGATTTAATTGAGCTTA+TGG | - | chr8_3:8583133-8583152 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTAATGAACTTG+AGG | + | chr8_3:8583478-8583497 | Msa1274730:intron | 20.0% |
| !!! | AGCTATAAGTTGTTTTTATA+AGG | + | chr8_3:8583640-8583659 | Msa1274730:intron | 20.0% |
| !! | TTCAACTAAAATAAGATTGT+TGG | + | chr8_3:8583682-8583701 | Msa1274730:intron | 20.0% |
| !! | AAATTGAAATGAAGCTAAAA+AGG | + | chr8_3:8584262-8584281 | Msa1274730:CDS | 20.0% |
| !! | AAACAATACATTATGTTTGA+AGG | + | chr8_3:8585330-8585349 | Msa1274730:CDS | 20.0% |
| !! | TTATGCATGTGTAATAAATA+AGG | + | chr8_3:8585667-8585686 | Msa1274730:three_prime_UTR | 20.0% |
| !!! | TTCATATACAGTTTTGTTAG+AGG | + | chr8_3:8582508-8582527 | Msa1274730:intron | 25.0% |
| !!! | TTTCTAATTTTTGGAAGTGA+TGG | + | chr8_3:8582673-8582692 | Msa1274730:intron | 25.0% |
| !!! | TCTCTCATTTTAGAACAAAA+AGG | + | chr8_3:8582936-8582955 | Msa1274730:CDS | 25.0% |
| ! | TATTCCAAATTATTTCCTTC+TGG | - | chr8_3:8583268-8583287 | None:intergenic | 25.0% |
| !!! | TATGTCTTTTTTTTGCTGAT+AGG | + | chr8_3:8583332-8583351 | Msa1274730:intron | 25.0% |
| ! | ATCAACAATACAACAAGATT+TGG | - | chr8_3:8583448-8583467 | None:intergenic | 25.0% |
| ! | CACTTATATGATAAACGTTT+AGG | - | chr8_3:8583562-8583581 | None:intergenic | 25.0% |
| ! | TGATTATGCATAAGCTATTT+CGG | + | chr8_3:8583580-8583599 | Msa1274730:intron | 25.0% |
| !!! | GTTGTTTTTATAAGGTATCT+TGG | + | chr8_3:8583648-8583667 | Msa1274730:intron | 25.0% |
| ! | CAGATTGAAAATAAGTAACA+TGG | + | chr8_3:8583999-8584018 | Msa1274730:CDS | 25.0% |
| ! | ATTGAAAATAAGTAACATGG+AGG | + | chr8_3:8584002-8584021 | Msa1274730:CDS | 25.0% |
| ! | CGGTTATAATTATCAATCTA+AGG | + | chr8_3:8584426-8584445 | Msa1274730:intron | 25.0% |
| !!! | ACAAGTTTTTTATCCAAACA+TGG | - | chr8_3:8584452-8584471 | None:intergenic | 25.0% |
| ! | AAACTTATGAAACTGATAAG+AGG | + | chr8_3:8585172-8585191 | Msa1274730:CDS | 25.0% |
| ! | AACTTATGAAACTGATAAGA+GGG | + | chr8_3:8585173-8585192 | Msa1274730:CDS | 25.0% |
| ! | AAAGATAGTAGAAATCATCT+CGG | + | chr8_3:8585196-8585215 | Msa1274730:CDS | 25.0% |
| !!! | AATTGAATTTTGAGTCATGT+CGG | - | chr8_3:8585305-8585324 | None:intergenic | 25.0% |
| ! | GATATTTACAGTAAAAAAGG+TGG | - | chr8_3:8585603-8585622 | None:intergenic | 25.0% |
| ! | TGCGATATTTACAGTAAAAA+AGG | - | chr8_3:8585606-8585625 | None:intergenic | 25.0% |
| !!! | TTTTTTACTGTAAATATCGC+AGG | + | chr8_3:8585605-8585624 | Msa1274730:three_prime_UTR | 25.0% |
| ! | CATGCATAAATAATCTGATA+TGG | - | chr8_3:8585656-8585675 | None:intergenic | 25.0% |
| CAAAACTGTATATGAAGCAA+TGG | - | chr8_3:8582504-8582523 | None:intergenic | 30.0% | |
| !!! | ATATACAGTTTTGTTAGAGG+TGG | + | chr8_3:8582511-8582530 | Msa1274730:intron | 30.0% |
| !! | GTGGGATTTGTTATGTTTAT+AGG | + | chr8_3:8582714-8582733 | Msa1274730:intron | 30.0% |
| CTCACAATATTAATGGAGAA+AGG | + | chr8_3:8582806-8582825 | Msa1274730:exon | 30.0% | |
| TGGAGAAAGGAATATTTACA+AGG | + | chr8_3:8582819-8582838 | Msa1274730:CDS | 30.0% | |
| ! | TTGATAGCAAGAGATGATAA+AGG | + | chr8_3:8582851-8582870 | Msa1274730:CDS | 30.0% |
| AAACCTATTCTACTCAAATG+TGG | + | chr8_3:8582878-8582897 | Msa1274730:CDS | 30.0% | |
| AAACCACATTTGAGTAGAAT+AGG | - | chr8_3:8582884-8582903 | None:intergenic | 30.0% | |
| TATTCTACTCAAATGTGGTT+TGG | + | chr8_3:8582883-8582902 | Msa1274730:CDS | 30.0% | |
| AAAAGAAACAAACCTGAAGA+GGG | - | chr8_3:8582983-8583002 | None:intergenic | 30.0% | |
| ! | GTATGTATGATGTTTTTCTC+AGG | + | chr8_3:8583181-8583200 | Msa1274730:intron | 30.0% |
| TTGAATTAACTTCACTAGCA+TGG | - | chr8_3:8583207-8583226 | None:intergenic | 30.0% | |
| ATGAATGTTGCAAAAACTTG+AGG | - | chr8_3:8583245-8583264 | None:intergenic | 30.0% | |
| TCATCCAGAAGGAAATAATT+TGG | + | chr8_3:8583261-8583280 | Msa1274730:CDS | 30.0% | |
| ! | TGTTGGATTTCTTTGATAAC+AGG | + | chr8_3:8583699-8583718 | Msa1274730:intron | 30.0% |
| TCACCAAGAAACAAACAAAA+TGG | + | chr8_3:8583772-8583791 | Msa1274730:CDS | 30.0% | |
| !! | TCTCCATTTTGTTTGTTTCT+TGG | - | chr8_3:8583778-8583797 | None:intergenic | 30.0% |
| ATTCAAGTAGTTGAACTTCA+AGG | - | chr8_3:8583933-8583952 | None:intergenic | 30.0% | |
| GTTCAACTACTTGAATATTG+CGG | + | chr8_3:8583937-8583956 | Msa1274730:CDS | 30.0% | |
| ! | ATCTAATTTGAGATTGCAGA+TGG | + | chr8_3:8584323-8584342 | Msa1274730:CDS | 30.0% |
| TTCTGACTTAGCTAAAAGAT+TGG | + | chr8_3:8584350-8584369 | Msa1274730:CDS | 30.0% | |
| AAGATCCAGAAGTAATAATG+CGG | + | chr8_3:8584406-8584425 | Msa1274730:intron | 30.0% | |
| TATAACCGCATTATTACTTC+TGG | - | chr8_3:8584414-8584433 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr8_3:8584666-8584685 | Msa1274730:intron | 30.0% | |
| GTTATTCAAGAAAGAGCAAA+GGG | - | chr8_3:8584693-8584712 | None:intergenic | 30.0% | |
| AGTTATTCAAGAAAGAGCAA+AGG | - | chr8_3:8584694-8584713 | None:intergenic | 30.0% | |
| !!! | TCACCTTTTATTTTGAATGC+AGG | + | chr8_3:8584727-8584746 | Msa1274730:intron | 30.0% |
| ! | TTGAAGAACTAGTTTATCAG+AGG | + | chr8_3:8584846-8584865 | Msa1274730:CDS | 30.0% |
| GAATTAAGAAACTATCAACC+TGG | + | chr8_3:8584893-8584912 | Msa1274730:CDS | 30.0% | |
| !!! | CTGATTTTGATTCTGATCAA+TGG | + | chr8_3:8585029-8585048 | Msa1274730:CDS | 30.0% |
| GATCAAATTAGATTTGTCTG+AGG | - | chr8_3:8585464-8585483 | None:intergenic | 30.0% | |
| CTTCTATTTAAACGAGGTTT+AGG | - | chr8_3:8585529-8585548 | None:intergenic | 30.0% | |
| GATGATCTTCTATTTAAACG+AGG | - | chr8_3:8585535-8585554 | None:intergenic | 30.0% | |
| CTGATATGGTATATCAGAAT+TGG | - | chr8_3:8585642-8585661 | None:intergenic | 30.0% | |
| TATAGGTATGGACCAGAAAT+TGG | + | chr8_3:8582731-8582750 | Msa1274730:intron | 35.0% | |
| GAAAACATAGAGCCAATTTC+TGG | - | chr8_3:8582746-8582765 | None:intergenic | 35.0% | |
| !!! | TTGGCTCTATGTTTTCTTCA+TGG | + | chr8_3:8582750-8582769 | Msa1274730:five_prime_UTR | 35.0% |
| GAAAAGAAACAAACCTGAAG+AGG | - | chr8_3:8582984-8583003 | None:intergenic | 35.0% | |
| ! | TTTTGCAACATTCATCCAGA+AGG | + | chr8_3:8583250-8583269 | Msa1274730:CDS | 35.0% |
| TTTCTTGGTGAGACAACAAT+TGG | - | chr8_3:8583763-8583782 | None:intergenic | 35.0% | |
| ! | TTTTCTGATCTCTTGCTCAT+AGG | - | chr8_3:8583869-8583888 | None:intergenic | 35.0% |
| GATCAGAAAACTGAAGAACA+TGG | + | chr8_3:8583879-8583898 | Msa1274730:CDS | 35.0% | |
| AGAACAAGAAACCGTTGTAA+TGG | + | chr8_3:8583966-8583985 | Msa1274730:CDS | 35.0% | |
| !!! | GTTTTGAAGCTCCATTACAA+CGG | - | chr8_3:8583980-8583999 | None:intergenic | 35.0% |
| ATTGTAGTGTCTCAAGCTTT+AGG | - | chr8_3:8584041-8584060 | None:intergenic | 35.0% | |
| AGACACTACAATCTGAGAAT+AGG | + | chr8_3:8584049-8584068 | Msa1274730:CDS | 35.0% | |
| ATCTGAGAATAGGAGATTAG+AGG | + | chr8_3:8584059-8584078 | Msa1274730:CDS | 35.0% | |
| GTATGAAGCTGAACAGAATA+AGG | + | chr8_3:8584164-8584183 | Msa1274730:CDS | 35.0% | |
| ACAAAAAGTTTCGAAGTTGC+AGG | + | chr8_3:8584206-8584225 | Msa1274730:CDS | 35.0% | |
| AAAAAGGCTTAGTGATCTTG+AGG | + | chr8_3:8584278-8584297 | Msa1274730:CDS | 35.0% | |
| ! | TATCAATCTAAGGCCATGTT+TGG | + | chr8_3:8584436-8584455 | Msa1274730:intron | 35.0% |
| GCTCTCTTAAATAGTCTCAT+AGG | + | chr8_3:8584622-8584641 | Msa1274730:intron | 35.0% | |
| CTGCCTGCATTCAAAATAAA+AGG | - | chr8_3:8584733-8584752 | None:intergenic | 35.0% | |
| ! | AAGAACTAGTTTATCAGAGG+TGG | + | chr8_3:8584849-8584868 | Msa1274730:CDS | 35.0% |
| ! | TTAGCTTTCTTCTCAGAAGT+TGG | - | chr8_3:8584962-8584981 | None:intergenic | 35.0% |
| CTTGAATATGCAAATGCTGA+AGG | + | chr8_3:8584992-8585011 | Msa1274730:CDS | 35.0% | |
| TCTTCTTATGTAACAGATCC+TGG | + | chr8_3:8585067-8585086 | Msa1274730:CDS | 35.0% | |
| ATGCTATCTTCTCTAGATCT+AGG | - | chr8_3:8585247-8585266 | None:intergenic | 35.0% | |
| AGAGAAGATAGCATTAACGA+TGG | + | chr8_3:8585253-8585272 | Msa1274730:CDS | 35.0% | |
| TATGTTTGAAGGAAGAGAGT+AGG | + | chr8_3:8585341-8585360 | Msa1274730:CDS | 35.0% | |
| TTTGATGTATTTGCTCGCAG+AGG | + | chr8_3:8582595-8582614 | Msa1274730:intron | 40.0% | |
| ! | ACTCAAATGTGGTTTGGCTT+TGG | + | chr8_3:8582889-8582908 | Msa1274730:CDS | 40.0% |
| AGAGAAGAGAAAACCAGCAA+AGG | - | chr8_3:8582921-8582940 | None:intergenic | 40.0% | |
| ! | TGCATAAGCTATTTCGGTAC+AGG | + | chr8_3:8583586-8583605 | Msa1274730:intron | 40.0% |
| GGAAGAAACATGCATCAACA+AGG | + | chr8_3:8583720-8583739 | Msa1274730:intron | 40.0% | |
| AGAAACATGCATCAACAAGG+TGG | + | chr8_3:8583723-8583742 | Msa1274730:CDS | 40.0% | |
| TGGTCATAATGCTTCAAGAG+AGG | + | chr8_3:8583899-8583918 | Msa1274730:CDS | 40.0% | |
| GGTCATAATGCTTCAAGAGA+GGG | + | chr8_3:8583900-8583919 | Msa1274730:CDS | 40.0% | |
| CAACGGTTTCTTGTTCTCTT+AGG | - | chr8_3:8583963-8583982 | None:intergenic | 40.0% | |
| TGCTGATCATGCAAAAGTCT+TGG | + | chr8_3:8584089-8584108 | Msa1274730:CDS | 40.0% | |
| TAGCAACAGCTTTGCATTCA+AGG | - | chr8_3:8584233-8584252 | None:intergenic | 40.0% | |
| TGAATGCAAAGCTGTTGCTA+AGG | + | chr8_3:8584233-8584252 | Msa1274730:CDS | 40.0% | |
| !! | CTTCTAGAACAGCATTTGCA+AGG | - | chr8_3:8584389-8584408 | None:intergenic | 40.0% |
| TAAGCTCTTCAGGATAGCTT+AGG | - | chr8_3:8584575-8584594 | None:intergenic | 40.0% | |
| AAGCTATCCTGAAGAGCTTA+TGG | + | chr8_3:8584575-8584594 | Msa1274730:intron | 40.0% | |
| TACATAAGAAGAAGCTCGTG+AGG | - | chr8_3:8585059-8585078 | None:intergenic | 40.0% | |
| !! | ACATCGGACGAATTTTCAAG+AGG | - | chr8_3:8585112-8585131 | None:intergenic | 40.0% |
| GGCATTGTTGAGTCTTACAT+CGG | - | chr8_3:8585128-8585147 | None:intergenic | 40.0% | |
| ! | GAAGACCTTAGACTTGTTTG+CGG | - | chr8_3:8585149-8585168 | None:intergenic | 40.0% |
| ! | GCAAACAAGTCTAAGGTCTT+CGG | + | chr8_3:8585148-8585167 | Msa1274730:CDS | 40.0% |
| GATAGTAGAAATCATCTCGG+TGG | + | chr8_3:8585199-8585218 | Msa1274730:CDS | 40.0% | |
| AGTAGGAGAAATTCTGACGT+TGG | + | chr8_3:8585358-8585377 | Msa1274730:CDS | 40.0% | |
| GCTTAAAGAGTTTCAGTCGA+AGG | + | chr8_3:8585383-8585402 | Msa1274730:CDS | 40.0% | |
| AACCTGAAGAGGGTCCTTTA+GGG | - | chr8_3:8582973-8582992 | None:intergenic | 45.0% | |
| AAACCTGAAGAGGGTCCTTT+AGG | - | chr8_3:8582974-8582993 | None:intergenic | 45.0% | |
| ! | GAATAGGAGATTAGAGGCAC+AGG | + | chr8_3:8584065-8584084 | Msa1274730:CDS | 45.0% |
| AAAAGTCTTGGCAGAACTCG+AGG | + | chr8_3:8584101-8584120 | Msa1274730:CDS | 45.0% | |
| GCTTAGTGATCTTGAGGATG+AGG | + | chr8_3:8584284-8584303 | Msa1274730:CDS | 45.0% | |
| TAGTGATCTTGAGGATGAGG+CGG | + | chr8_3:8584287-8584306 | Msa1274730:CDS | 45.0% | |
| GACATGTCCATAAGCTCTTC+AGG | - | chr8_3:8584585-8584604 | None:intergenic | 45.0% | |
| CTCATAGGTGCTTATGCTAG+TGG | + | chr8_3:8584637-8584656 | Msa1274730:intron | 45.0% | |
| AAAGAGCAAAGGGACCTGTT+TGG | - | chr8_3:8584683-8584702 | None:intergenic | 45.0% | |
| AATGCAGGCAGATGCTCTAA+GGG | + | chr8_3:8584742-8584761 | Msa1274730:intron | 45.0% | |
| CTTCGTTTGCTTGTCTGAGA+CGG | - | chr8_3:8584778-8584797 | None:intergenic | 45.0% | |
| AGAAACTATCAACCTGGACC+AGG | + | chr8_3:8584899-8584918 | Msa1274730:CDS | 45.0% | |
| ACCAGGCAAAACAGTTGCAA+GGG | + | chr8_3:8584916-8584935 | Msa1274730:CDS | 45.0% | |
| ATAAGAAGAAGCTCGTGAGG+AGG | - | chr8_3:8585056-8585075 | None:intergenic | 45.0% | |
| GAATACTCATCACTGTCACC+AGG | - | chr8_3:8585088-8585107 | None:intergenic | 45.0% | |
| CAATGCCGCAAACAAGTCTA+AGG | + | chr8_3:8585141-8585160 | Msa1274730:CDS | 45.0% | |
| !!! | TATTTTTATTTTTTTTAAAG+TGG | + | chr8_3:8582627-8582646 | Msa1274730:intron | 5.0% |
| !! | GCTTTGGCTCTTACCTTTGC+TGG | + | chr8_3:8582905-8582924 | Msa1274730:CDS | 50.0% |
| AGGATCAAGCCTTCCCCTAA+AGG | + | chr8_3:8582956-8582975 | Msa1274730:CDS | 50.0% | |
| ACCTGAAGAGGGTCCTTTAG+GGG | - | chr8_3:8582972-8582991 | None:intergenic | 50.0% | |
| TCGAGACTTGCATACGCTGA+TGG | - | chr8_3:8583838-8583857 | None:intergenic | 50.0% | |
| GAATGCAGGCAGATGCTCTA+AGG | + | chr8_3:8584741-8584760 | Msa1274730:intron | 50.0% | |
| GACCAGGCAAAACAGTTGCA+AGG | + | chr8_3:8584915-8584934 | Msa1274730:CDS | 50.0% | |
| ! | TCCCTTGCAACTGTTTTGCC+TGG | - | chr8_3:8584920-8584939 | None:intergenic | 50.0% |
| !! | AGTCGAAGGAAAAGTGTCGC+AGG | + | chr8_3:8585397-8585416 | Msa1274730:CDS | 50.0% |
| ! | GAAGAGGGTCCTTTAGGGGA+AGG | - | chr8_3:8582968-8582987 | None:intergenic | 55.0% |
| TCCCCTAAAGGACCCTCTTC+AGG | + | chr8_3:8582968-8582987 | Msa1274730:CDS | 55.0% | |
| AGGATGAGGCGGAACAGTGT+AGG | + | chr8_3:8584298-8584317 | Msa1274730:CDS | 55.0% | |
| ! | GCAACTGTTTTGCCTGGTCC+AGG | - | chr8_3:8584914-8584933 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 8582331 | 8585738 | 8582331 | ID=Msa1274730;Name=Msa1274730 |
| chr8_3 | mRNA | 8582331 | 8585738 | 8582331 | ID=Msa1274730-mRNA-1;Parent=Msa1274730;Name=Msa1274730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=152|1|0.8|1|0.75|0.6|5|165|592 |
| chr8_3 | exon | 8582331 | 8582400 | 8582331 | ID=Msa1274730-mRNA-1:exon:3452;Parent=Msa1274730-mRNA-1 |
| chr8_3 | exon | 8582736 | 8582989 | 8582736 | ID=Msa1274730-mRNA-1:exon:3453;Parent=Msa1274730-mRNA-1 |
| chr8_3 | exon | 8583203 | 8583288 | 8583203 | ID=Msa1274730-mRNA-1:exon:3454;Parent=Msa1274730-mRNA-1 |
| chr8_3 | exon | 8583721 | 8584416 | 8583721 | ID=Msa1274730-mRNA-1:exon:3455;Parent=Msa1274730-mRNA-1 |
| chr8_3 | exon | 8584749 | 8585738 | 8584749 | ID=Msa1274730-mRNA-1:exon:3456;Parent=Msa1274730-mRNA-1 |
| chr8_3 | five_prime_UTR | 8582331 | 8582400 | 8582331 | ID=Msa1274730-mRNA-1:five_prime_utr;Parent=Msa1274730-mRNA-1 |
| chr8_3 | five_prime_UTR | 8582736 | 8582817 | 8582736 | ID=Msa1274730-mRNA-1:five_prime_utr;Parent=Msa1274730-mRNA-1 |
| chr8_3 | CDS | 8582818 | 8582989 | 8582818 | ID=Msa1274730-mRNA-1:cds;Parent=Msa1274730-mRNA-1 |
| chr8_3 | CDS | 8583203 | 8583288 | 8583203 | ID=Msa1274730-mRNA-1:cds;Parent=Msa1274730-mRNA-1 |
| chr8_3 | CDS | 8583721 | 8584416 | 8583721 | ID=Msa1274730-mRNA-1:cds;Parent=Msa1274730-mRNA-1 |
| chr8_3 | CDS | 8584749 | 8585573 | 8584749 | ID=Msa1274730-mRNA-1:cds;Parent=Msa1274730-mRNA-1 |
| chr8_3 | three_prime_UTR | 8585574 | 8585738 | 8585574 | ID=Msa1274730-mRNA-1:three_prime_utr;Parent=Msa1274730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
