Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183370 | sp|O80513|CCU41_ARATH | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 5.73e-96 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183370 | B7FHT5 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 1.05e-144 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1183370 | Msa1309420 | 0.957398 | 2.988569e-115 | -8.615850e-47 |
| Msa1183370 | Msa1404400 | 0.844656 | 6.604818e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183370 | MtrunA17_Chr8g0335971 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 2.01e-148 | 410 |
| Msa1183370 | MtrunA17_Chr7g0250121 | 80.788 | 203 | 36 | 2 | 1 | 200 | 1 | 203 | 1.39e-115 | 327 |
| Msa1183370 | MtrunA17_Chr7g0259831 | 50.633 | 158 | 73 | 3 | 9 | 162 | 30 | 186 | 5.03e-50 | 161 |
| Msa1183370 | MtrunA17_Chr7g0231431 | 46.541 | 159 | 77 | 2 | 10 | 160 | 29 | 187 | 6.25e-47 | 154 |
| Msa1183370 | MtrunA17_Chr2g0322921 | 46.154 | 169 | 75 | 1 | 9 | 161 | 25 | 193 | 1.55e-43 | 145 |
| Msa1183370 | MtrunA17_Chr4g0012811 | 45.122 | 164 | 82 | 1 | 5 | 160 | 24 | 187 | 5.41e-37 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183370 | AT2G44740.1 | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 5.82e-97 | 280 |
| Msa1183370 | AT5G61650.1 | 56.796 | 206 | 81 | 3 | 3 | 200 | 13 | 218 | 3.11e-80 | 238 |
| Msa1183370 | AT5G07450.1 | 57.143 | 203 | 73 | 4 | 1 | 196 | 16 | 211 | 2.39e-77 | 231 |
| Msa1183370 | AT2G45080.1 | 40.000 | 195 | 112 | 2 | 5 | 195 | 23 | 216 | 3.33e-46 | 152 |
| Msa1183370 | AT3G60550.1 | 40.909 | 198 | 108 | 2 | 10 | 199 | 30 | 226 | 8.45e-46 | 151 |
| Msa1183370 | AT3G05327.1 | 45.963 | 161 | 78 | 3 | 10 | 161 | 31 | 191 | 2.21e-45 | 149 |
| Msa1183370 | AT3G21870.1 | 45.513 | 156 | 80 | 2 | 10 | 160 | 25 | 180 | 2.13e-43 | 144 |
| Msa1183370 | AT3G63120.2 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.45e-41 | 140 |
| Msa1183370 | AT3G63120.1 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.45e-41 | 140 |
Find 25 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGTTGGATTTCTTGTT+TGG | 0.226808 | 8_1:-18608246 | Msa1183370:CDS |
| AAGAAAATTCATCTCCGTTT+TGG | 0.264352 | 8_1:+18608266 | None:intergenic |
| GTTATCAACTTTGGCATCAT+TGG | 0.279346 | 8_1:+18609639 | None:intergenic |
| TTGGATTTCTTGTTTGGTTT+AGG | 0.294726 | 8_1:-18608240 | Msa1183370:CDS |
| TAGCTTTGAATTGAGATGTT+TGG | 0.365755 | 8_1:+18609525 | None:intergenic |
| TTCTCTCTTCACTTCTTGAA+AGG | 0.369852 | 8_1:-18609614 | Msa1183370:CDS |
| GCATTTGTAGCATTTCTCTT+TGG | 0.372837 | 8_1:+18608166 | None:intergenic |
| GAGAGAAAAGTTATCAACTT+TGG | 0.396655 | 8_1:+18609630 | None:intergenic |
| TCTCTCTTCACTTCTTGAAA+GGG | 0.397849 | 8_1:-18609613 | Msa1183370:CDS |
| ATCAAACAGCTAGTTGTTGT+TGG | 0.399140 | 8_1:+18608052 | None:intergenic |
| TATGGTTGCTGCTAAATTCA+TGG | 0.400894 | 8_1:-18609361 | Msa1183370:CDS |
| AATGCTTATTATGCAAAAGT+TGG | 0.413031 | 8_1:-18608297 | Msa1183370:CDS |
| TCTCAATGCATGTAGTAGAT+TGG | 0.414987 | 8_1:-18608019 | Msa1183370:three_prime_UTR |
| CTTGTTGATCACTAGTGTTA+TGG | 0.440335 | 8_1:-18609379 | Msa1183370:CDS |
| AAGGAGTTGATAGGCAAAGA+AGG | 0.486036 | 8_1:+18609414 | None:intergenic |
| GTAGTGAATCTGTTACTCAT+TGG | 0.495522 | 8_1:-18607977 | Msa1183370:three_prime_UTR |
| TGAACATTGAAGGAGTTGAT+AGG | 0.499691 | 8_1:+18609405 | None:intergenic |
| GAGTTTGAGTGAAACGATCA+AGG | 0.511395 | 8_1:+18609439 | None:intergenic |
| CAACAAGCGATGAACATTGA+AGG | 0.515637 | 8_1:+18609395 | None:intergenic |
| CAAAACTTTGTCACTATCCA+TGG | 0.516852 | 8_1:-18609676 | Msa1183370:exon |
| GCTTATTATGCAAAAGTTGG+AGG | 0.519013 | 8_1:-18608294 | Msa1183370:CDS |
| GAGTAAGAAAGGAATCCATA+AGG | 0.542511 | 8_1:+18607936 | None:intergenic |
| TGGACTCTCTAACTCTGCCA+TGG | 0.576170 | 8_1:+18609659 | None:intergenic |
| AGTTGGAGGAATCACCAAAA+CGG | 0.594734 | 8_1:-18608280 | Msa1183370:CDS |
| CAATAAGCTTGAAATGTGAC+TGG | 0.606542 | 8_1:+18608198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAAAAAACAG+AGG | + | chr8_1:18608504-18608523 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | - | chr8_1:18608757-18608776 | Msa1183370:intron | 10.0% |
| !! | TAAAAAAAAAAAAAAAACAG+AGG | + | chr8_1:18608504-18608523 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | - | chr8_1:18608757-18608776 | Msa1183370:intron | 10.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | + | chr8_1:18608543-18608562 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | + | chr8_1:18608729-18608748 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | + | chr8_1:18608842-18608861 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | + | chr8_1:18609189-18609208 | None:intergenic | 15.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | + | chr8_1:18608543-18608562 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | + | chr8_1:18608729-18608748 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | + | chr8_1:18608842-18608861 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | + | chr8_1:18609189-18609208 | None:intergenic | 15.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | - | chr8_1:18608413-18608432 | Msa1183370:intron | 20.0% |
| !! | ATCAAACAAAAACAGAATTA+TGG | - | chr8_1:18608461-18608480 | Msa1183370:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | + | chr8_1:18608610-18608629 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | + | chr8_1:18608912-18608931 | None:intergenic | 20.0% |
| !!! | AATTTTAGCAAAATCACTAA+AGG | - | chr8_1:18609520-18609539 | Msa1183370:CDS | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | - | chr8_1:18609684-18609703 | Msa1183370:five_prime_UTR | 20.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | - | chr8_1:18608413-18608432 | Msa1183370:intron | 20.0% |
| !! | ATCAAACAAAAACAGAATTA+TGG | - | chr8_1:18608461-18608480 | Msa1183370:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | + | chr8_1:18608610-18608629 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | + | chr8_1:18608912-18608931 | None:intergenic | 20.0% |
| !!! | AATTTTAGCAAAATCACTAA+AGG | - | chr8_1:18609520-18609539 | Msa1183370:CDS | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | - | chr8_1:18609684-18609703 | Msa1183370:five_prime_UTR | 20.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | + | chr8_1:18608076-18608095 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | - | chr8_1:18608077-18608096 | Msa1183370:CDS | 25.0% |
| ! | CACTCAAATATGCTAAAATT+TGG | - | chr8_1:18608693-18608712 | Msa1183370:intron | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | - | chr8_1:18608768-18608787 | Msa1183370:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | + | chr8_1:18608870-18608889 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | - | chr8_1:18608881-18608900 | Msa1183370:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | - | chr8_1:18608992-18609011 | Msa1183370:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | + | chr8_1:18609007-18609026 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | + | chr8_1:18609088-18609107 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | + | chr8_1:18609304-18609323 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | - | chr8_1:18609338-18609357 | Msa1183370:intron | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | + | chr8_1:18609497-18609516 | None:intergenic | 25.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | + | chr8_1:18608076-18608095 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | - | chr8_1:18608077-18608096 | Msa1183370:CDS | 25.0% |
| ! | CACTCAAATATGCTAAAATT+TGG | - | chr8_1:18608693-18608712 | Msa1183370:intron | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | - | chr8_1:18608768-18608787 | Msa1183370:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | + | chr8_1:18608870-18608889 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | - | chr8_1:18608881-18608900 | Msa1183370:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | - | chr8_1:18608992-18609011 | Msa1183370:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | + | chr8_1:18609007-18609026 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | + | chr8_1:18609088-18609107 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | + | chr8_1:18609304-18609323 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | - | chr8_1:18609338-18609357 | Msa1183370:intron | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | + | chr8_1:18609497-18609516 | None:intergenic | 25.0% |
| GAGAGAAAAGTTATCAACTT+TGG | + | chr8_1:18608008-18608027 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | + | chr8_1:18608113-18608132 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | - | chr8_1:18608328-18608347 | Msa1183370:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | - | chr8_1:18608349-18608368 | Msa1183370:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | - | chr8_1:18608430-18608449 | Msa1183370:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | + | chr8_1:18608867-18608886 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | - | chr8_1:18608886-18608905 | Msa1183370:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | + | chr8_1:18608969-18608988 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | - | chr8_1:18609091-18609110 | Msa1183370:intron | 30.0% | |
| TGGATTGATTGTATGTTTGT+TGG | + | chr8_1:18609125-18609144 | None:intergenic | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | + | chr8_1:18609289-18609308 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | - | chr8_1:18609306-18609325 | Msa1183370:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | + | chr8_1:18609372-18609391 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | - | chr8_1:18609395-18609414 | Msa1183370:CDS | 30.0% |
| ! | AAGTTTTGCTTCAACAAGTT+TGG | + | chr8_1:18607947-18607966 | None:intergenic | 30.0% |
| GAGAGAAAAGTTATCAACTT+TGG | + | chr8_1:18608008-18608027 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | + | chr8_1:18608113-18608132 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | - | chr8_1:18608328-18608347 | Msa1183370:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | - | chr8_1:18608349-18608368 | Msa1183370:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | - | chr8_1:18608430-18608449 | Msa1183370:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | + | chr8_1:18608867-18608886 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | - | chr8_1:18608886-18608905 | Msa1183370:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | + | chr8_1:18608969-18608988 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | - | chr8_1:18609091-18609110 | Msa1183370:intron | 30.0% | |
| TGGATTGATTGTATGTTTGT+TGG | + | chr8_1:18609125-18609144 | None:intergenic | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | + | chr8_1:18609289-18609308 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | - | chr8_1:18609306-18609325 | Msa1183370:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | + | chr8_1:18609372-18609391 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | - | chr8_1:18609395-18609414 | Msa1183370:CDS | 30.0% |
| CAAAACTTTGTCACTATCCA+TGG | - | chr8_1:18607959-18607978 | Msa1183370:three_prime_UTR | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | + | chr8_1:18607999-18608018 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | - | chr8_1:18608021-18608040 | Msa1183370:three_prime_UTR | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | - | chr8_1:18608022-18608041 | Msa1183370:three_prime_UTR | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | + | chr8_1:18608233-18608252 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | - | chr8_1:18608256-18608275 | Msa1183370:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | - | chr8_1:18608274-18608293 | Msa1183370:CDS | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | - | chr8_1:18609341-18609360 | Msa1183370:intron | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | - | chr8_1:18609376-18609395 | Msa1183370:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | - | chr8_1:18609389-18609408 | Msa1183370:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | + | chr8_1:18609440-18609459 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | + | chr8_1:18609472-18609491 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | + | chr8_1:18609586-18609605 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | - | chr8_1:18609616-18609635 | Msa1183370:CDS | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | - | chr8_1:18609658-18609677 | Msa1183370:CDS | 35.0% | |
| CAAAACTTTGTCACTATCCA+TGG | - | chr8_1:18607959-18607978 | Msa1183370:three_prime_UTR | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | + | chr8_1:18607999-18608018 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | - | chr8_1:18608021-18608040 | Msa1183370:three_prime_UTR | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | - | chr8_1:18608022-18608041 | Msa1183370:three_prime_UTR | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | + | chr8_1:18608233-18608252 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | - | chr8_1:18608256-18608275 | Msa1183370:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | - | chr8_1:18608274-18608293 | Msa1183370:CDS | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | - | chr8_1:18609341-18609360 | Msa1183370:intron | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | - | chr8_1:18609376-18609395 | Msa1183370:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | - | chr8_1:18609389-18609408 | Msa1183370:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | + | chr8_1:18609440-18609459 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | + | chr8_1:18609472-18609491 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | + | chr8_1:18609586-18609605 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | - | chr8_1:18609616-18609635 | Msa1183370:CDS | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | - | chr8_1:18609658-18609677 | Msa1183370:CDS | 35.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | + | chr8_1:18608199-18608218 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | + | chr8_1:18608224-18608243 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | + | chr8_1:18608243-18608262 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | - | chr8_1:18608785-18608804 | Msa1183370:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | + | chr8_1:18608794-18608813 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | - | chr8_1:18609095-18609114 | Msa1183370:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | + | chr8_1:18609148-18609167 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | + | chr8_1:18609149-18609168 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | + | chr8_1:18609325-18609344 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | - | chr8_1:18609355-18609374 | Msa1183370:CDS | 40.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | + | chr8_1:18608199-18608218 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | + | chr8_1:18608224-18608243 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | + | chr8_1:18608243-18608262 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | - | chr8_1:18608785-18608804 | Msa1183370:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | + | chr8_1:18608794-18608813 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | - | chr8_1:18609095-18609114 | Msa1183370:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | + | chr8_1:18609148-18609167 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | + | chr8_1:18609149-18609168 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | + | chr8_1:18609325-18609344 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | - | chr8_1:18609355-18609374 | Msa1183370:CDS | 40.0% | |
| GGCCGAACCTTGAATTATCA+AGG | + | chr8_1:18608891-18608910 | None:intergenic | 45.0% | |
| GGCCGAACCTTGAATTATCA+AGG | + | chr8_1:18608891-18608910 | None:intergenic | 45.0% | |
| !! | ATTATATTTATAATAACAAT+TGG | + | chr8_1:18609192-18609211 | None:intergenic | 5.0% |
| !! | ATTATATTTATAATAACAAT+TGG | + | chr8_1:18609192-18609211 | None:intergenic | 5.0% |
| TGGACTCTCTAACTCTGCCA+TGG | + | chr8_1:18607979-18607998 | None:intergenic | 50.0% | |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | + | chr8_1:18609112-18609131 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+TGG | + | chr8_1:18609145-18609164 | None:intergenic | 50.0% | |
| TGGACTCTCTAACTCTGCCA+TGG | + | chr8_1:18607979-18607998 | None:intergenic | 50.0% | |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | + | chr8_1:18609112-18609131 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+TGG | + | chr8_1:18609145-18609164 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 18607946 | 18609711 | 18607946 | ID=Msa1183370;Name=Msa1183370 |
| chr8_1 | mRNA | 18607946 | 18609711 | 18607946 | ID=Msa1183370-mRNA-1;Parent=Msa1183370;Name=Msa1183370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=32|1|1|1|1|1|2|107|200 |
| chr8_1 | exon | 18607946 | 18608329 | 18607946 | ID=Msa1183370-mRNA-1:exon:7148;Parent=Msa1183370-mRNA-1 |
| chr8_1 | exon | 18609354 | 18609711 | 18609354 | ID=Msa1183370-mRNA-1:exon:7147;Parent=Msa1183370-mRNA-1 |
| chr8_1 | five_prime_UTR | 18609680 | 18609711 | 18609680 | ID=Msa1183370-mRNA-1:five_prime_utr;Parent=Msa1183370-mRNA-1 |
| chr8_1 | CDS | 18609354 | 18609679 | 18609354 | ID=Msa1183370-mRNA-1:cds;Parent=Msa1183370-mRNA-1 |
| chr8_1 | CDS | 18608053 | 18608329 | 18608053 | ID=Msa1183370-mRNA-1:cds;Parent=Msa1183370-mRNA-1 |
| chr8_1 | three_prime_UTR | 18607946 | 18608052 | 18607946 | ID=Msa1183370-mRNA-1:three_prime_utr;Parent=Msa1183370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
