Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309420 | XP_013443896.1 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 2.19e-144 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309420 | sp|O80513|CCU41_ARATH | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 5.73e-96 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309420 | B7FHT5 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 1.05e-144 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1309420 | Msa1404400 | 0.863722 | 2.031758e-64 | -8.615850e-47 |
| Msa1183370 | Msa1309420 | 0.957398 | 2.988569e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309420 | MtrunA17_Chr8g0335971 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 2.01e-148 | 410 |
| Msa1309420 | MtrunA17_Chr7g0250121 | 80.788 | 203 | 36 | 2 | 1 | 200 | 1 | 203 | 1.39e-115 | 327 |
| Msa1309420 | MtrunA17_Chr7g0259831 | 50.633 | 158 | 73 | 3 | 9 | 162 | 30 | 186 | 5.03e-50 | 161 |
| Msa1309420 | MtrunA17_Chr7g0231431 | 46.541 | 159 | 77 | 2 | 10 | 160 | 29 | 187 | 6.25e-47 | 154 |
| Msa1309420 | MtrunA17_Chr2g0322921 | 46.154 | 169 | 75 | 1 | 9 | 161 | 25 | 193 | 1.55e-43 | 145 |
| Msa1309420 | MtrunA17_Chr4g0012811 | 45.122 | 164 | 82 | 1 | 5 | 160 | 24 | 187 | 5.41e-37 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309420 | AT2G44740.1 | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 5.82e-97 | 280 |
| Msa1309420 | AT5G61650.1 | 56.796 | 206 | 81 | 3 | 3 | 200 | 13 | 218 | 3.11e-80 | 238 |
| Msa1309420 | AT5G07450.1 | 57.143 | 203 | 73 | 4 | 1 | 196 | 16 | 211 | 2.39e-77 | 231 |
| Msa1309420 | AT2G45080.1 | 40.000 | 195 | 112 | 2 | 5 | 195 | 23 | 216 | 3.33e-46 | 152 |
| Msa1309420 | AT3G60550.1 | 40.909 | 198 | 108 | 2 | 10 | 199 | 30 | 226 | 8.45e-46 | 151 |
| Msa1309420 | AT3G05327.1 | 45.963 | 161 | 78 | 3 | 10 | 161 | 31 | 191 | 2.21e-45 | 149 |
| Msa1309420 | AT3G21870.1 | 45.513 | 156 | 80 | 2 | 10 | 160 | 25 | 180 | 2.13e-43 | 144 |
| Msa1309420 | AT3G63120.2 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.45e-41 | 140 |
| Msa1309420 | AT3G63120.1 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.45e-41 | 140 |
Find 25 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGTTGGATTTCTTGTT+TGG | 0.226808 | 8_4:+5883664 | Msa1309420:CDS |
| AAGAAAATTCATCTCCGTTT+TGG | 0.264352 | 8_4:-5883644 | None:intergenic |
| GTTATCAACTTTGGCATCAT+TGG | 0.279346 | 8_4:-5882271 | None:intergenic |
| TTGGATTTCTTGTTTGGTTT+AGG | 0.294726 | 8_4:+5883670 | Msa1309420:CDS |
| TAGCTTTGAATTGAGATGTT+TGG | 0.365755 | 8_4:-5882385 | None:intergenic |
| TTCTCTCTTCACTTCTTGAA+AGG | 0.369852 | 8_4:+5882296 | Msa1309420:CDS |
| GCATTTGTAGCATTTCTCTT+TGG | 0.372837 | 8_4:-5883744 | None:intergenic |
| GAGAGAAAAGTTATCAACTT+TGG | 0.396655 | 8_4:-5882280 | None:intergenic |
| TCTCTCTTCACTTCTTGAAA+GGG | 0.397849 | 8_4:+5882297 | Msa1309420:CDS |
| ATCAAACAGCTAGTTGTTGT+TGG | 0.399140 | 8_4:-5883858 | None:intergenic |
| TATGGTTGCTGCTAAATTCA+TGG | 0.400894 | 8_4:+5882549 | Msa1309420:CDS |
| AATGCTTATTATGCAAAAGT+TGG | 0.413031 | 8_4:+5883613 | Msa1309420:CDS |
| TCTCAATGCATGTAGTAGAT+TGG | 0.414987 | 8_4:+5883891 | Msa1309420:three_prime_UTR |
| CTTGTTGATCACTAGTGTTA+TGG | 0.440335 | 8_4:+5882531 | Msa1309420:CDS |
| AAGGAGTTGATAGGCAAAGA+AGG | 0.486036 | 8_4:-5882496 | None:intergenic |
| GTAGTGAATCTGTTACTCAT+TGG | 0.495522 | 8_4:+5883933 | Msa1309420:three_prime_UTR |
| TGAACATTGAAGGAGTTGAT+AGG | 0.499691 | 8_4:-5882505 | None:intergenic |
| GAGTTTGAGTGAAACGATCA+AGG | 0.511395 | 8_4:-5882471 | None:intergenic |
| CAACAAGCGATGAACATTGA+AGG | 0.515637 | 8_4:-5882515 | None:intergenic |
| CAAAACTTTGTCACTATCCA+TGG | 0.516852 | 8_4:+5882234 | Msa1309420:exon |
| GCTTATTATGCAAAAGTTGG+AGG | 0.519013 | 8_4:+5883616 | Msa1309420:CDS |
| GAGTAAGAAAGGAATCCATA+AGG | 0.542511 | 8_4:-5883974 | None:intergenic |
| TGGACTCTCTAACTCTGCCA+TGG | 0.576170 | 8_4:-5882251 | None:intergenic |
| AGTTGGAGGAATCACCAAAA+CGG | 0.594734 | 8_4:+5883630 | Msa1309420:CDS |
| CAATAAGCTTGAAATGTGAC+TGG | 0.606542 | 8_4:-5883712 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAAAAAACAG+AGG | - | chr8_4:5882779-5882798 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | + | chr8_4:5883032-5883051 | Msa1309420:intron | 10.0% |
| !! | TAAAAAAAAAAAAAAAACAG+AGG | - | chr8_4:5882779-5882798 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | + | chr8_4:5883032-5883051 | Msa1309420:intron | 10.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | - | chr8_4:5882818-5882837 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | - | chr8_4:5883004-5883023 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | - | chr8_4:5883117-5883136 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | - | chr8_4:5883464-5883483 | None:intergenic | 15.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | - | chr8_4:5882818-5882837 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | - | chr8_4:5883004-5883023 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | - | chr8_4:5883117-5883136 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | - | chr8_4:5883464-5883483 | None:intergenic | 15.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | + | chr8_4:5882688-5882707 | Msa1309420:intron | 20.0% |
| !! | ATCAAACAAAAACAGAATTA+TGG | + | chr8_4:5882736-5882755 | Msa1309420:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | - | chr8_4:5882885-5882904 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | - | chr8_4:5883187-5883206 | None:intergenic | 20.0% |
| !!! | AATTTTAGCAAAATCACTAA+AGG | + | chr8_4:5883795-5883814 | Msa1309420:CDS | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | + | chr8_4:5883959-5883978 | Msa1309420:three_prime_UTR | 20.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | + | chr8_4:5882688-5882707 | Msa1309420:intron | 20.0% |
| !! | ATCAAACAAAAACAGAATTA+TGG | + | chr8_4:5882736-5882755 | Msa1309420:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | - | chr8_4:5882885-5882904 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | - | chr8_4:5883187-5883206 | None:intergenic | 20.0% |
| !!! | AATTTTAGCAAAATCACTAA+AGG | + | chr8_4:5883795-5883814 | Msa1309420:CDS | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | + | chr8_4:5883959-5883978 | Msa1309420:three_prime_UTR | 20.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | - | chr8_4:5882351-5882370 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | + | chr8_4:5882352-5882371 | Msa1309420:CDS | 25.0% |
| ! | CACTCAAATATGCTAAAATT+TGG | + | chr8_4:5882968-5882987 | Msa1309420:intron | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | + | chr8_4:5883043-5883062 | Msa1309420:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | - | chr8_4:5883145-5883164 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | + | chr8_4:5883156-5883175 | Msa1309420:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | + | chr8_4:5883267-5883286 | Msa1309420:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | - | chr8_4:5883282-5883301 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | - | chr8_4:5883363-5883382 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | - | chr8_4:5883579-5883598 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | + | chr8_4:5883613-5883632 | Msa1309420:CDS | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | - | chr8_4:5883772-5883791 | None:intergenic | 25.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | - | chr8_4:5882351-5882370 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | + | chr8_4:5882352-5882371 | Msa1309420:CDS | 25.0% |
| ! | CACTCAAATATGCTAAAATT+TGG | + | chr8_4:5882968-5882987 | Msa1309420:intron | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | + | chr8_4:5883043-5883062 | Msa1309420:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | - | chr8_4:5883145-5883164 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | + | chr8_4:5883156-5883175 | Msa1309420:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | + | chr8_4:5883267-5883286 | Msa1309420:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | - | chr8_4:5883282-5883301 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | - | chr8_4:5883363-5883382 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | - | chr8_4:5883579-5883598 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | + | chr8_4:5883613-5883632 | Msa1309420:CDS | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | - | chr8_4:5883772-5883791 | None:intergenic | 25.0% |
| GAGAGAAAAGTTATCAACTT+TGG | - | chr8_4:5882283-5882302 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | - | chr8_4:5882388-5882407 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | + | chr8_4:5882603-5882622 | Msa1309420:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | + | chr8_4:5882624-5882643 | Msa1309420:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | + | chr8_4:5882705-5882724 | Msa1309420:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | - | chr8_4:5883142-5883161 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | + | chr8_4:5883161-5883180 | Msa1309420:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | - | chr8_4:5883244-5883263 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | + | chr8_4:5883366-5883385 | Msa1309420:intron | 30.0% | |
| TGGATTGATTGTATGTTTGT+TGG | - | chr8_4:5883400-5883419 | None:intergenic | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | - | chr8_4:5883564-5883583 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | + | chr8_4:5883581-5883600 | Msa1309420:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | - | chr8_4:5883647-5883666 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | + | chr8_4:5883670-5883689 | Msa1309420:CDS | 30.0% |
| ! | AAGTTTTGCTTCAACAAGTT+TGG | - | chr8_4:5882222-5882241 | None:intergenic | 30.0% |
| GAGAGAAAAGTTATCAACTT+TGG | - | chr8_4:5882283-5882302 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | - | chr8_4:5882388-5882407 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | + | chr8_4:5882603-5882622 | Msa1309420:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | + | chr8_4:5882624-5882643 | Msa1309420:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | + | chr8_4:5882705-5882724 | Msa1309420:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | - | chr8_4:5883142-5883161 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | + | chr8_4:5883161-5883180 | Msa1309420:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | - | chr8_4:5883244-5883263 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | + | chr8_4:5883366-5883385 | Msa1309420:intron | 30.0% | |
| TGGATTGATTGTATGTTTGT+TGG | - | chr8_4:5883400-5883419 | None:intergenic | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | - | chr8_4:5883564-5883583 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | + | chr8_4:5883581-5883600 | Msa1309420:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | - | chr8_4:5883647-5883666 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | + | chr8_4:5883670-5883689 | Msa1309420:CDS | 30.0% |
| CAAAACTTTGTCACTATCCA+TGG | + | chr8_4:5882234-5882253 | Msa1309420:exon | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | - | chr8_4:5882274-5882293 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | + | chr8_4:5882296-5882315 | Msa1309420:CDS | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | + | chr8_4:5882297-5882316 | Msa1309420:CDS | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | chr8_4:5882508-5882527 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | + | chr8_4:5882531-5882550 | Msa1309420:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | + | chr8_4:5882549-5882568 | Msa1309420:CDS | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | + | chr8_4:5883616-5883635 | Msa1309420:CDS | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | + | chr8_4:5883651-5883670 | Msa1309420:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | + | chr8_4:5883664-5883683 | Msa1309420:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | - | chr8_4:5883715-5883734 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | - | chr8_4:5883747-5883766 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | - | chr8_4:5883861-5883880 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | + | chr8_4:5883891-5883910 | Msa1309420:three_prime_UTR | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | + | chr8_4:5883933-5883952 | Msa1309420:three_prime_UTR | 35.0% | |
| CAAAACTTTGTCACTATCCA+TGG | + | chr8_4:5882234-5882253 | Msa1309420:exon | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | - | chr8_4:5882274-5882293 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | + | chr8_4:5882296-5882315 | Msa1309420:CDS | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | + | chr8_4:5882297-5882316 | Msa1309420:CDS | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | chr8_4:5882508-5882527 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | + | chr8_4:5882531-5882550 | Msa1309420:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | + | chr8_4:5882549-5882568 | Msa1309420:CDS | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | + | chr8_4:5883616-5883635 | Msa1309420:CDS | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | + | chr8_4:5883651-5883670 | Msa1309420:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | + | chr8_4:5883664-5883683 | Msa1309420:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | - | chr8_4:5883715-5883734 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | - | chr8_4:5883747-5883766 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | - | chr8_4:5883861-5883880 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | + | chr8_4:5883891-5883910 | Msa1309420:three_prime_UTR | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | + | chr8_4:5883933-5883952 | Msa1309420:three_prime_UTR | 35.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | - | chr8_4:5882474-5882493 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | - | chr8_4:5882499-5882518 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | - | chr8_4:5882518-5882537 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | + | chr8_4:5883060-5883079 | Msa1309420:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | - | chr8_4:5883069-5883088 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | chr8_4:5883370-5883389 | Msa1309420:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | - | chr8_4:5883423-5883442 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | - | chr8_4:5883424-5883443 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | - | chr8_4:5883600-5883619 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | + | chr8_4:5883630-5883649 | Msa1309420:CDS | 40.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | - | chr8_4:5882474-5882493 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | - | chr8_4:5882499-5882518 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | - | chr8_4:5882518-5882537 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | + | chr8_4:5883060-5883079 | Msa1309420:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | - | chr8_4:5883069-5883088 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | chr8_4:5883370-5883389 | Msa1309420:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | - | chr8_4:5883423-5883442 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | - | chr8_4:5883424-5883443 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | - | chr8_4:5883600-5883619 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | + | chr8_4:5883630-5883649 | Msa1309420:CDS | 40.0% | |
| GGCCGAACCTTGAATTATCA+AGG | - | chr8_4:5883166-5883185 | None:intergenic | 45.0% | |
| GGCCGAACCTTGAATTATCA+AGG | - | chr8_4:5883166-5883185 | None:intergenic | 45.0% | |
| !! | ATTATATTTATAATAACAAT+TGG | - | chr8_4:5883467-5883486 | None:intergenic | 5.0% |
| !! | ATTATATTTATAATAACAAT+TGG | - | chr8_4:5883467-5883486 | None:intergenic | 5.0% |
| TGGACTCTCTAACTCTGCCA+TGG | - | chr8_4:5882254-5882273 | None:intergenic | 50.0% | |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | - | chr8_4:5883387-5883406 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+TGG | - | chr8_4:5883420-5883439 | None:intergenic | 50.0% | |
| TGGACTCTCTAACTCTGCCA+TGG | - | chr8_4:5882254-5882273 | None:intergenic | 50.0% | |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | - | chr8_4:5883387-5883406 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+TGG | - | chr8_4:5883420-5883439 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 5882221 | 5883986 | 5882221 | ID=Msa1309420;Name=Msa1309420 |
| chr8_4 | mRNA | 5882221 | 5883986 | 5882221 | ID=Msa1309420-mRNA-1;Parent=Msa1309420;Name=Msa1309420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=32|1|1|1|1|1|2|107|200 |
| chr8_4 | exon | 5882221 | 5882578 | 5882221 | ID=Msa1309420-mRNA-1:exon:1887;Parent=Msa1309420-mRNA-1 |
| chr8_4 | exon | 5883603 | 5883986 | 5883603 | ID=Msa1309420-mRNA-1:exon:1888;Parent=Msa1309420-mRNA-1 |
| chr8_4 | five_prime_UTR | 5882221 | 5882252 | 5882221 | ID=Msa1309420-mRNA-1:five_prime_utr;Parent=Msa1309420-mRNA-1 |
| chr8_4 | CDS | 5882253 | 5882578 | 5882253 | ID=Msa1309420-mRNA-1:cds;Parent=Msa1309420-mRNA-1 |
| chr8_4 | CDS | 5883603 | 5883879 | 5883603 | ID=Msa1309420-mRNA-1:cds;Parent=Msa1309420-mRNA-1 |
| chr8_4 | three_prime_UTR | 5883880 | 5883986 | 5883880 | ID=Msa1309420-mRNA-1:three_prime_utr;Parent=Msa1309420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
