Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404400 | XP_013443896.1 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 2.19e-144 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404400 | sp|O80513|CCU41_ARATH | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 5.73e-96 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404400 | B7FHT5 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 1.05e-144 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1271810 | Msa1404400 | 0.885375 | 8.581771e-72 | -8.615850e-47 |
| Msa1309420 | Msa1404400 | 0.863722 | 2.031758e-64 | -8.615850e-47 |
| Msa1183370 | Msa1404400 | 0.844656 | 6.604818e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404400 | MtrunA17_Chr8g0335971 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 2.01e-148 | 410 |
| Msa1404400 | MtrunA17_Chr7g0250121 | 80.788 | 203 | 36 | 2 | 1 | 200 | 1 | 203 | 1.39e-115 | 327 |
| Msa1404400 | MtrunA17_Chr7g0259831 | 50.633 | 158 | 73 | 3 | 9 | 162 | 30 | 186 | 5.03e-50 | 161 |
| Msa1404400 | MtrunA17_Chr7g0231431 | 46.541 | 159 | 77 | 2 | 10 | 160 | 29 | 187 | 6.25e-47 | 154 |
| Msa1404400 | MtrunA17_Chr2g0322921 | 46.154 | 169 | 75 | 1 | 9 | 161 | 25 | 193 | 1.55e-43 | 145 |
| Msa1404400 | MtrunA17_Chr4g0012811 | 45.122 | 164 | 82 | 1 | 5 | 160 | 24 | 187 | 5.41e-37 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404400 | AT2G44740.1 | 70.558 | 197 | 48 | 3 | 1 | 192 | 1 | 192 | 5.82e-97 | 280 |
| Msa1404400 | AT5G61650.1 | 56.796 | 206 | 81 | 3 | 3 | 200 | 13 | 218 | 3.11e-80 | 238 |
| Msa1404400 | AT5G07450.1 | 57.143 | 203 | 73 | 4 | 1 | 196 | 16 | 211 | 2.39e-77 | 231 |
| Msa1404400 | AT2G45080.1 | 40.000 | 195 | 112 | 2 | 5 | 195 | 23 | 216 | 3.33e-46 | 152 |
| Msa1404400 | AT3G60550.1 | 40.909 | 198 | 108 | 2 | 10 | 199 | 30 | 226 | 8.45e-46 | 151 |
| Msa1404400 | AT3G05327.1 | 45.963 | 161 | 78 | 3 | 10 | 161 | 31 | 191 | 2.21e-45 | 149 |
| Msa1404400 | AT3G21870.1 | 45.513 | 156 | 80 | 2 | 10 | 160 | 25 | 180 | 2.13e-43 | 144 |
| Msa1404400 | AT3G63120.2 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.45e-41 | 140 |
| Msa1404400 | AT3G63120.1 | 50.806 | 124 | 60 | 1 | 36 | 159 | 62 | 184 | 1.45e-41 | 140 |
Find 26 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGTTGGATTTCTTGTT+TGG | 0.226808 | tig0023062:+45629 | Msa1404400:CDS |
| AAGAAAATTCATCTCCGTTT+TGG | 0.264352 | tig0023062:-45609 | None:intergenic |
| GTTATCAACTTTGGCATCAT+TGG | 0.279346 | tig0023062:-44237 | None:intergenic |
| TTGGATTTCTTGTTTGGTTT+AGG | 0.294726 | tig0023062:+45635 | Msa1404400:CDS |
| TAGCTTTGAATTGAGATGTT+TGG | 0.365755 | tig0023062:-44351 | None:intergenic |
| TTCTCTCTTCACTTCTTGAA+AGG | 0.369852 | tig0023062:+44262 | Msa1404400:CDS |
| GCATTTGTAGCATTTCTCTT+TGG | 0.372837 | tig0023062:-45709 | None:intergenic |
| GAGAGAAAAGTTATCAACTT+TGG | 0.396655 | tig0023062:-44246 | None:intergenic |
| TCTCTCTTCACTTCTTGAAA+GGG | 0.397849 | tig0023062:+44263 | Msa1404400:CDS |
| ATCAAACAGCTAGTTGTTGT+TGG | 0.399140 | tig0023062:-45823 | None:intergenic |
| TATGGTTGCTGCTAAATTCA+TGG | 0.400894 | tig0023062:+44515 | Msa1404400:CDS |
| AATGCTTATTATGCAAAAGT+TGG | 0.413031 | tig0023062:+45578 | Msa1404400:CDS |
| TCTCAATGCATGTAGTAGAT+TGG | 0.414987 | tig0023062:+45856 | Msa1404400:three_prime_UTR |
| CTTGTTGATCACTAGTGTTA+TGG | 0.440335 | tig0023062:+44497 | Msa1404400:CDS |
| AAGGAGTTGATAGGCAAAGA+AGG | 0.486036 | tig0023062:-44462 | None:intergenic |
| GTAGTGAATCTGTTACTCAT+TGG | 0.495522 | tig0023062:+45898 | Msa1404400:three_prime_UTR |
| TGAACATTGAAGGAGTTGAT+AGG | 0.499691 | tig0023062:-44471 | None:intergenic |
| GAGTTTGAGTGAAACGATCA+AGG | 0.511395 | tig0023062:-44437 | None:intergenic |
| CAACAAGCGATGAACATTGA+AGG | 0.515637 | tig0023062:-44481 | None:intergenic |
| CAAAACTTTGTCACTATCCA+TGG | 0.518427 | tig0023062:+44200 | Msa1404400:exon |
| GCTTATTATGCAAAAGTTGG+AGG | 0.519013 | tig0023062:+45581 | Msa1404400:CDS |
| GAGTAAGAAAGGAATCCATA+AGG | 0.542511 | tig0023062:-45939 | None:intergenic |
| TGGACTCTCTAACTCGGCCA+TGG | 0.557349 | tig0023062:-44217 | None:intergenic |
| CATCATTGGACTCTCTAACT+CGG | 0.585771 | tig0023062:-44223 | None:intergenic |
| AGTTGGAGGAATCACCAAAA+CGG | 0.594734 | tig0023062:+45595 | Msa1404400:CDS |
| CAATAAGCTTGAAATGTGAC+TGG | 0.606542 | tig0023062:-45677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAAAAAAAACAG+AGG | - | tig0023062:44745-44764 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | + | tig0023062:44997-45016 | Msa1404400:intron | 10.0% |
| !! | ATAAAAAAAAAAAAAAACAG+AGG | - | tig0023062:44745-44764 | None:intergenic | 10.0% |
| !!! | TTAAATTTGTTTAGATTTTA+CGG | + | tig0023062:44997-45016 | Msa1404400:intron | 10.0% |
| !! | ATCAAATAAAAACAGAATTA+TGG | + | tig0023062:44702-44721 | Msa1404400:intron | 15.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | - | tig0023062:44783-44802 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | - | tig0023062:44969-44988 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | - | tig0023062:45082-45101 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | - | tig0023062:45429-45448 | None:intergenic | 15.0% |
| !! | ATCAAATAAAAACAGAATTA+TGG | + | tig0023062:44702-44721 | Msa1404400:intron | 15.0% |
| !!! | AATTCAGATCAAAATATTTT+TGG | - | tig0023062:44783-44802 | None:intergenic | 15.0% |
| !! | TTTAAACAAATTTAAGTGTA+TGG | - | tig0023062:44969-44988 | None:intergenic | 15.0% |
| !! | TAAAAAGAATACAACATTAA+AGG | - | tig0023062:45082-45101 | None:intergenic | 15.0% |
| !! | ATATTTATAATAACAATTGG+TGG | - | tig0023062:45429-45448 | None:intergenic | 15.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | + | tig0023062:44654-44673 | Msa1404400:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | - | tig0023062:44850-44869 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | - | tig0023062:45152-45171 | None:intergenic | 20.0% |
| !!! | AATTTTAGCAAAATCACTAA+AGG | + | tig0023062:45760-45779 | Msa1404400:CDS | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | + | tig0023062:45924-45943 | Msa1404400:three_prime_UTR | 20.0% |
| !!! | TCTTTAGAAAAAATTGTCTT+AGG | + | tig0023062:44654-44673 | Msa1404400:intron | 20.0% |
| !! | ACATCAAAATAATAGAAGAA+AGG | - | tig0023062:44850-44869 | None:intergenic | 20.0% |
| !!! | AATCAGACTTTACTAATTTT+CGG | - | tig0023062:45152-45171 | None:intergenic | 20.0% |
| !!! | AATTTTAGCAAAATCACTAA+AGG | + | tig0023062:45760-45779 | Msa1404400:CDS | 20.0% |
| !!! | TTTTAAAGTACTTTTCCTTA+TGG | + | tig0023062:45924-45943 | Msa1404400:three_prime_UTR | 20.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | - | tig0023062:44317-44336 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | + | tig0023062:44318-44337 | Msa1404400:CDS | 25.0% |
| ! | CACTCAAATATGCTAAAATT+TGG | + | tig0023062:44933-44952 | Msa1404400:intron | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | + | tig0023062:45008-45027 | Msa1404400:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | - | tig0023062:45110-45129 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | + | tig0023062:45121-45140 | Msa1404400:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | + | tig0023062:45232-45251 | Msa1404400:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | - | tig0023062:45247-45266 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | - | tig0023062:45328-45347 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | - | tig0023062:45544-45563 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | + | tig0023062:45578-45597 | Msa1404400:CDS | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | - | tig0023062:45737-45756 | None:intergenic | 25.0% |
| ! | GAAAAATAGAGATCTTATGA+TGG | - | tig0023062:44317-44336 | None:intergenic | 25.0% |
| !!! | CATAAGATCTCTATTTTTCA+TGG | + | tig0023062:44318-44337 | Msa1404400:CDS | 25.0% |
| ! | CACTCAAATATGCTAAAATT+TGG | + | tig0023062:44933-44952 | Msa1404400:intron | 25.0% |
| !! | TAGATTTTACGGTTAACTTT+TGG | + | tig0023062:45008-45027 | Msa1404400:intron | 25.0% |
| !!! | GGTTCTATTTTTCTGAAAAT+CGG | - | tig0023062:45110-45129 | None:intergenic | 25.0% |
| !! | AATAGAACCTTGATAATTCA+AGG | + | tig0023062:45121-45140 | Msa1404400:intron | 25.0% |
| !!! | AACAATTTTAGTCCAATCTA+TGG | + | tig0023062:45232-45251 | Msa1404400:intron | 25.0% |
| !! | AAGTCTAAAATACCATAGAT+TGG | - | tig0023062:45247-45266 | None:intergenic | 25.0% |
| ! | CATAGTATTATTCACAAGAA+AGG | - | tig0023062:45328-45347 | None:intergenic | 25.0% |
| ! | GGATTATAAATCATAGACAA+AGG | - | tig0023062:45544-45563 | None:intergenic | 25.0% |
| ! | AATGCTTATTATGCAAAAGT+TGG | + | tig0023062:45578-45597 | Msa1404400:CDS | 25.0% |
| ! | GTAGAATCTTCAAAAATTAG+AGG | - | tig0023062:45737-45756 | None:intergenic | 25.0% |
| GAGAGAAAAGTTATCAACTT+TGG | - | tig0023062:44249-44268 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | - | tig0023062:44354-44373 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | + | tig0023062:44569-44588 | Msa1404400:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | + | tig0023062:44590-44609 | Msa1404400:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | + | tig0023062:44671-44690 | Msa1404400:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | - | tig0023062:45107-45126 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | + | tig0023062:45126-45145 | Msa1404400:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | - | tig0023062:45209-45228 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | + | tig0023062:45331-45350 | Msa1404400:intron | 30.0% | |
| TGGATTGATTGTATGTTTGT+TGG | - | tig0023062:45365-45384 | None:intergenic | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | - | tig0023062:45529-45548 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | + | tig0023062:45546-45565 | Msa1404400:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | - | tig0023062:45612-45631 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | + | tig0023062:45635-45654 | Msa1404400:CDS | 30.0% |
| ! | AAGTTTTGCTTCAACAAGTT+TGG | - | tig0023062:44188-44207 | None:intergenic | 30.0% |
| GAGAGAAAAGTTATCAACTT+TGG | - | tig0023062:44249-44268 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATTGAGATGTT+TGG | - | tig0023062:44354-44373 | None:intergenic | 30.0% |
| !! | CTGCATAAATTCTGAAACTT+TGG | + | tig0023062:44569-44588 | Msa1404400:intron | 30.0% |
| ! | GGTCATCATTGATGAATTTT+TGG | + | tig0023062:44590-44609 | Msa1404400:intron | 30.0% |
| CTTAGGAATTCTATGTAGTT+TGG | + | tig0023062:44671-44690 | Msa1404400:intron | 30.0% | |
| !! | TCTATTTTTCTGAAAATCGG+AGG | - | tig0023062:45107-45126 | None:intergenic | 30.0% |
| ! | AACCTTGATAATTCAAGGTT+CGG | + | tig0023062:45126-45145 | Msa1404400:intron | 30.0% |
| ! | GAGTTCTAGTGAATGATTAA+TGG | - | tig0023062:45209-45228 | None:intergenic | 30.0% |
| TTGTGAATAATACTATGTCC+AGG | + | tig0023062:45331-45350 | Msa1404400:intron | 30.0% | |
| TGGATTGATTGTATGTTTGT+TGG | - | tig0023062:45365-45384 | None:intergenic | 30.0% | |
| GACAAAGGAAAAAGAACATT+AGG | - | tig0023062:45529-45548 | None:intergenic | 30.0% | |
| GTCTATGATTTATAATCCTC+AGG | + | tig0023062:45546-45565 | Msa1404400:intron | 30.0% | |
| ! | AAGAAAATTCATCTCCGTTT+TGG | - | tig0023062:45612-45631 | None:intergenic | 30.0% |
| ! | TTGGATTTCTTGTTTGGTTT+AGG | + | tig0023062:45635-45654 | Msa1404400:CDS | 30.0% |
| CAAAACTTTGTCACTATCCA+TGG | + | tig0023062:44200-44219 | Msa1404400:exon | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | - | tig0023062:44240-44259 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | + | tig0023062:44262-44281 | Msa1404400:CDS | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | + | tig0023062:44263-44282 | Msa1404400:CDS | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | tig0023062:44474-44493 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | + | tig0023062:44497-44516 | Msa1404400:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | + | tig0023062:44515-44534 | Msa1404400:CDS | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | + | tig0023062:45581-45600 | Msa1404400:CDS | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | + | tig0023062:45616-45635 | Msa1404400:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | + | tig0023062:45629-45648 | Msa1404400:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | - | tig0023062:45680-45699 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | - | tig0023062:45712-45731 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | - | tig0023062:45826-45845 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | + | tig0023062:45856-45875 | Msa1404400:three_prime_UTR | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | + | tig0023062:45898-45917 | Msa1404400:three_prime_UTR | 35.0% | |
| CAAAACTTTGTCACTATCCA+TGG | + | tig0023062:44200-44219 | Msa1404400:exon | 35.0% | |
| GTTATCAACTTTGGCATCAT+TGG | - | tig0023062:44240-44259 | None:intergenic | 35.0% | |
| TTCTCTCTTCACTTCTTGAA+AGG | + | tig0023062:44262-44281 | Msa1404400:CDS | 35.0% | |
| TCTCTCTTCACTTCTTGAAA+GGG | + | tig0023062:44263-44282 | Msa1404400:CDS | 35.0% | |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | tig0023062:44474-44493 | None:intergenic | 35.0% |
| CTTGTTGATCACTAGTGTTA+TGG | + | tig0023062:44497-44516 | Msa1404400:CDS | 35.0% | |
| TATGGTTGCTGCTAAATTCA+TGG | + | tig0023062:44515-44534 | Msa1404400:CDS | 35.0% | |
| GCTTATTATGCAAAAGTTGG+AGG | + | tig0023062:45581-45600 | Msa1404400:CDS | 35.0% | |
| ! | GGAGATGAATTTTCTTGAGT+TGG | + | tig0023062:45616-45635 | Msa1404400:CDS | 35.0% |
| !! | CTTGAGTTGGATTTCTTGTT+TGG | + | tig0023062:45629-45648 | Msa1404400:CDS | 35.0% |
| CAATAAGCTTGAAATGTGAC+TGG | - | tig0023062:45680-45699 | None:intergenic | 35.0% | |
| GCATTTGTAGCATTTCTCTT+TGG | - | tig0023062:45712-45731 | None:intergenic | 35.0% | |
| ATCAAACAGCTAGTTGTTGT+TGG | - | tig0023062:45826-45845 | None:intergenic | 35.0% | |
| TCTCAATGCATGTAGTAGAT+TGG | + | tig0023062:45856-45875 | Msa1404400:three_prime_UTR | 35.0% | |
| GTAGTGAATCTGTTACTCAT+TGG | + | tig0023062:45898-45917 | Msa1404400:three_prime_UTR | 35.0% | |
| CATCATTGGACTCTCTAACT+CGG | - | tig0023062:44226-44245 | None:intergenic | 40.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | - | tig0023062:44440-44459 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | - | tig0023062:44465-44484 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | - | tig0023062:44484-44503 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | + | tig0023062:45025-45044 | Msa1404400:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | - | tig0023062:45034-45053 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | tig0023062:45335-45354 | Msa1404400:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | - | tig0023062:45388-45407 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | - | tig0023062:45389-45408 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | - | tig0023062:45565-45584 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | + | tig0023062:45595-45614 | Msa1404400:CDS | 40.0% | |
| CATCATTGGACTCTCTAACT+CGG | - | tig0023062:44226-44245 | None:intergenic | 40.0% | |
| GAGTTTGAGTGAAACGATCA+AGG | - | tig0023062:44440-44459 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+AGG | - | tig0023062:44465-44484 | None:intergenic | 40.0% |
| CAACAAGCGATGAACATTGA+AGG | - | tig0023062:44484-44503 | None:intergenic | 40.0% | |
| ! | TTTTGGCCAAATGCATCGTA+TGG | + | tig0023062:45025-45044 | Msa1404400:intron | 40.0% |
| TAGAGACCATACGATGCATT+TGG | - | tig0023062:45034-45053 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | tig0023062:45335-45354 | Msa1404400:intron | 40.0% | |
| GTTAGCTAGCAAACTCACAT+GGG | - | tig0023062:45388-45407 | None:intergenic | 40.0% | |
| AGTTAGCTAGCAAACTCACA+TGG | - | tig0023062:45389-45408 | None:intergenic | 40.0% | |
| AAGCATTATTGTAGCACCTG+AGG | - | tig0023062:45565-45584 | None:intergenic | 40.0% | |
| AGTTGGAGGAATCACCAAAA+CGG | + | tig0023062:45595-45614 | Msa1404400:CDS | 40.0% | |
| GGCCGAACCTTGAATTATCA+AGG | - | tig0023062:45131-45150 | None:intergenic | 45.0% | |
| GGCCGAACCTTGAATTATCA+AGG | - | tig0023062:45131-45150 | None:intergenic | 45.0% | |
| !! | ATTATATTTATAATAACAAT+TGG | - | tig0023062:45432-45451 | None:intergenic | 5.0% |
| !! | ATTATATTTATAATAACAAT+TGG | - | tig0023062:45432-45451 | None:intergenic | 5.0% |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | - | tig0023062:45352-45371 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+TGG | - | tig0023062:45385-45404 | None:intergenic | 50.0% | |
| ! | TGTTTGTTGGAAAGCCAGCC+TGG | - | tig0023062:45352-45371 | None:intergenic | 50.0% |
| AGCTAGCAAACTCACATGGG+TGG | - | tig0023062:45385-45404 | None:intergenic | 50.0% | |
| TGGACTCTCTAACTCGGCCA+TGG | - | tig0023062:44220-44239 | None:intergenic | 55.0% | |
| TGGACTCTCTAACTCGGCCA+TGG | - | tig0023062:44220-44239 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023062 | gene | 44187 | 45951 | 44187 | ID=Msa1404400;Name=Msa1404400 |
| tig0023062 | mRNA | 44187 | 45951 | 44187 | ID=Msa1404400-mRNA-1;Parent=Msa1404400;Name=Msa1404400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=32|1|1|1|1|1|2|107|200 |
| tig0023062 | exon | 44187 | 44544 | 44187 | ID=Msa1404400-mRNA-1:exon:19740;Parent=Msa1404400-mRNA-1 |
| tig0023062 | exon | 45568 | 45951 | 45568 | ID=Msa1404400-mRNA-1:exon:19741;Parent=Msa1404400-mRNA-1 |
| tig0023062 | five_prime_UTR | 44187 | 44218 | 44187 | ID=Msa1404400-mRNA-1:five_prime_utr;Parent=Msa1404400-mRNA-1 |
| tig0023062 | CDS | 44219 | 44544 | 44219 | ID=Msa1404400-mRNA-1:cds;Parent=Msa1404400-mRNA-1 |
| tig0023062 | CDS | 45568 | 45844 | 45568 | ID=Msa1404400-mRNA-1:cds;Parent=Msa1404400-mRNA-1 |
| tig0023062 | three_prime_UTR | 45845 | 45951 | 45845 | ID=Msa1404400-mRNA-1:three_prime_utr;Parent=Msa1404400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
