Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183460 | XP_003615304.4 | 92.894 | 577 | 31 | 1 | 4 | 570 | 1 | 577 | 0.0 | 1111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183460 | sp|Q67XZ3|INV3_ARATH | 55.461 | 586 | 225 | 11 | 1 | 567 | 6 | 574 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1183460 | Msa1229300 | 0.839702 | 1.352603e-57 | -8.615850e-47 |
| Msa1183460 | Msa1309540 | 0.853936 | 1.718441e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183460 | MtrunA17_Chr8g0342491 | 61.815 | 584 | 193 | 11 | 3 | 567 | 3 | 575 | 0.0 | 723 |
| Msa1183460 | MtrunA17_Chr2g0330151 | 61.274 | 581 | 190 | 12 | 9 | 567 | 8 | 575 | 0.0 | 703 |
| Msa1183460 | MtrunA17_Chr5g0427521 | 92.958 | 355 | 25 | 0 | 56 | 410 | 11 | 365 | 0.0 | 693 |
| Msa1183460 | MtrunA17_Chr1g0151241 | 53.420 | 541 | 227 | 9 | 39 | 566 | 43 | 571 | 0.0 | 585 |
| Msa1183460 | MtrunA17_Chr1g0178391 | 49.564 | 573 | 255 | 13 | 15 | 567 | 10 | 568 | 0.0 | 575 |
| Msa1183460 | MtrunA17_Chr1g0151301 | 50.554 | 542 | 243 | 9 | 36 | 564 | 14 | 543 | 0.0 | 562 |
| Msa1183460 | MtrunA17_Chr7g0266641 | 48.270 | 578 | 265 | 13 | 9 | 566 | 10 | 573 | 0.0 | 554 |
| Msa1183460 | MtrunA17_Chr1g0151321 | 49.097 | 554 | 251 | 14 | 36 | 571 | 14 | 554 | 0.0 | 536 |
| Msa1183460 | MtrunA17_Chr4g0056501 | 42.541 | 543 | 282 | 11 | 42 | 570 | 112 | 638 | 2.72e-138 | 416 |
| Msa1183460 | MtrunA17_Chr3g0079291 | 39.706 | 544 | 285 | 14 | 42 | 566 | 104 | 623 | 2.10e-125 | 382 |
| Msa1183460 | MtrunA17_Chr5g0427511 | 90.805 | 174 | 6 | 1 | 407 | 570 | 20 | 193 | 1.48e-107 | 320 |
| Msa1183460 | MtrunA17_Chr1g0151281 | 50.246 | 203 | 95 | 4 | 66 | 268 | 74 | 270 | 6.57e-66 | 216 |
| Msa1183460 | MtrunA17_Chr1g0151271 | 47.826 | 207 | 96 | 3 | 369 | 565 | 1 | 205 | 1.16e-56 | 189 |
| Msa1183460 | MtrunA17_Chr5g0427531 | 94.340 | 53 | 3 | 0 | 4 | 56 | 1 | 53 | 1.98e-28 | 107 |
| Msa1183460 | MtrunA17_Chr1g0151251 | 37.931 | 87 | 49 | 2 | 267 | 353 | 25 | 106 | 6.01e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183460 | AT1G55120.1 | 55.461 | 586 | 225 | 11 | 1 | 567 | 6 | 574 | 0.0 | 644 |
| Msa1183460 | AT3G13790.2 | 55.888 | 569 | 219 | 11 | 21 | 567 | 23 | 581 | 0.0 | 634 |
| Msa1183460 | AT3G13790.1 | 55.594 | 572 | 219 | 12 | 21 | 567 | 23 | 584 | 0.0 | 629 |
| Msa1183460 | AT1G55120.4 | 57.278 | 529 | 201 | 8 | 55 | 567 | 15 | 534 | 0.0 | 617 |
| Msa1183460 | AT1G55120.3 | 56.273 | 542 | 211 | 9 | 42 | 567 | 28 | 559 | 0.0 | 616 |
| Msa1183460 | AT3G13784.1 | 54.898 | 541 | 219 | 9 | 38 | 564 | 39 | 568 | 0.0 | 615 |
| Msa1183460 | AT1G55120.2 | 57.197 | 528 | 201 | 8 | 56 | 567 | 17 | 535 | 0.0 | 615 |
| Msa1183460 | AT3G13784.2 | 54.596 | 544 | 219 | 10 | 38 | 564 | 39 | 571 | 0.0 | 610 |
| Msa1183460 | AT3G13784.4 | 54.596 | 544 | 219 | 10 | 38 | 564 | 39 | 571 | 0.0 | 609 |
| Msa1183460 | AT3G13790.5 | 56.870 | 524 | 202 | 10 | 58 | 567 | 1 | 514 | 0.0 | 595 |
| Msa1183460 | AT3G13790.4 | 56.870 | 524 | 202 | 10 | 58 | 567 | 1 | 514 | 0.0 | 595 |
| Msa1183460 | AT3G13790.3 | 56.870 | 524 | 202 | 10 | 58 | 567 | 1 | 514 | 0.0 | 595 |
| Msa1183460 | AT3G13784.3 | 54.580 | 524 | 213 | 9 | 55 | 564 | 6 | 518 | 0.0 | 588 |
| Msa1183460 | AT2G36190.1 | 49.301 | 572 | 248 | 13 | 21 | 563 | 24 | 582 | 0.0 | 534 |
| Msa1183460 | AT3G52600.1 | 48.459 | 584 | 252 | 15 | 15 | 563 | 12 | 581 | 0.0 | 529 |
| Msa1183460 | AT3G52600.3 | 50.940 | 532 | 224 | 11 | 55 | 563 | 10 | 527 | 5.18e-178 | 514 |
| Msa1183460 | AT3G52600.2 | 50.851 | 529 | 223 | 11 | 58 | 563 | 1 | 515 | 2.79e-176 | 509 |
| Msa1183460 | AT5G11920.1 | 45.796 | 559 | 271 | 12 | 25 | 567 | 3 | 545 | 8.05e-172 | 498 |
| Msa1183460 | AT5G11920.3 | 46.080 | 523 | 256 | 10 | 58 | 567 | 1 | 510 | 2.44e-163 | 475 |
| Msa1183460 | AT1G62660.1 | 41.405 | 541 | 291 | 12 | 42 | 567 | 106 | 635 | 2.65e-129 | 393 |
| Msa1183460 | AT1G12240.1 | 40.775 | 542 | 294 | 12 | 42 | 567 | 121 | 651 | 2.83e-128 | 390 |
| Msa1183460 | AT5G11920.2 | 47.132 | 401 | 192 | 10 | 25 | 419 | 3 | 389 | 1.84e-126 | 378 |
| Msa1183460 | AT1G62660.2 | 40.952 | 525 | 287 | 11 | 55 | 567 | 24 | 537 | 1.27e-123 | 375 |
| Msa1183460 | AT1G62660.4 | 39.203 | 477 | 269 | 10 | 102 | 566 | 1 | 468 | 9.54e-102 | 316 |
| Msa1183460 | AT1G62660.3 | 39.203 | 477 | 269 | 10 | 102 | 566 | 1 | 468 | 9.54e-102 | 316 |
Find 114 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATACTTGGCAACATAAT+AGG | 0.169591 | 8_1:+18710086 | None:intergenic |
| ACCATTTGGTTTACTAGTTT+TGG | 0.186131 | 8_1:-18708526 | Msa1183460:CDS |
| ATGTGTCTGACCCATTTCTT+AGG | 0.192701 | 8_1:-18710133 | Msa1183460:CDS |
| TTGCTCCATGTAGCACCTTT+TGG | 0.214232 | 8_1:+18710362 | None:intergenic |
| GGACATGTTTATTCCTAAAA+AGG | 0.216223 | 8_1:-18709712 | Msa1183460:CDS |
| ATTTAACTCCAAAGTGTTAA+AGG | 0.241377 | 8_1:-18708849 | Msa1183460:CDS |
| GAAAATGGTGCAAAAGTTAA+AGG | 0.243040 | 8_1:-18708561 | Msa1183460:CDS |
| AATACCATTCATCCAATTCT+TGG | 0.264025 | 8_1:+18711196 | None:intergenic |
| GGTTGTGTTGGTAGAAAATA+TGG | 0.281254 | 8_1:+18710384 | None:intergenic |
| AAAAGGATGGTCTGGAATTC+AGG | 0.285122 | 8_1:-18709538 | Msa1183460:intron |
| AAGAATAATGGTAGAGATAA+TGG | 0.285934 | 8_1:-18707571 | Msa1183460:three_prime_UTR |
| ATATGTTTGATTCAAATTAA+AGG | 0.290847 | 8_1:+18711244 | None:intergenic |
| CAACATCTATGTAATGAAAA+TGG | 0.293823 | 8_1:-18708576 | Msa1183460:CDS |
| AAGAACGATTTGACCACTTA+TGG | 0.301717 | 8_1:-18708307 | Msa1183460:CDS |
| ACTTCCAACCTTCCAAGAAT+TGG | 0.308571 | 8_1:-18711208 | Msa1183460:CDS |
| TGGCAACATAATAGGGTTCT+TGG | 0.312775 | 8_1:+18710094 | None:intergenic |
| TCTTCTTGTCTAGCCGTTGA+TGG | 0.314926 | 8_1:-18707525 | Msa1183460:three_prime_UTR |
| CAATACTTGGCAACATAATA+GGG | 0.317867 | 8_1:+18710087 | None:intergenic |
| GGCTGCTCATGGGAACTTCT+TGG | 0.322034 | 8_1:-18711343 | Msa1183460:CDS |
| GGAGCAACAATAGCATTGTT+TGG | 0.337333 | 8_1:-18710346 | Msa1183460:CDS |
| GAAGATGATGTAGTTGTGTT+AGG | 0.337617 | 8_1:-18707390 | Msa1183460:three_prime_UTR |
| TTTATCCATTCCCTAAGAAA+TGG | 0.341223 | 8_1:+18710122 | None:intergenic |
| CATGGGAACTTCTTGGTTGT+TGG | 0.342360 | 8_1:-18711336 | Msa1183460:CDS |
| GAGCAACAATAGCATTGTTT+GGG | 0.350928 | 8_1:-18710345 | Msa1183460:CDS |
| GACATCAATGGTTGTTGGTC+AGG | 0.352503 | 8_1:-18710251 | Msa1183460:CDS |
| CAAGAGGATGATGTACAAAA+AGG | 0.352852 | 8_1:-18709555 | Msa1183460:CDS |
| CACCTTCATGCATTCAATAA+TGG | 0.357955 | 8_1:-18707675 | Msa1183460:CDS |
| ACTTTGGAGTTAAATTTGAT+AGG | 0.368820 | 8_1:+18708857 | None:intergenic |
| ATTAGACCCTAGTTGGAAAA+TGG | 0.369888 | 8_1:-18708604 | Msa1183460:CDS |
| AAAGTTAAAGGGGTAGGATT+AGG | 0.375310 | 8_1:-18708549 | Msa1183460:CDS |
| GGGGTAGGATTAGGACCATT+TGG | 0.379464 | 8_1:-18708540 | Msa1183460:CDS |
| AAAATGGTGCAAAAGTTAAA+GGG | 0.383052 | 8_1:-18708560 | Msa1183460:CDS |
| TTTAACTCCAAAGTGTTAAA+GGG | 0.385491 | 8_1:-18708848 | Msa1183460:CDS |
| TTTCAAAAGATCTAGTGAAT+TGG | 0.396190 | 8_1:-18710313 | Msa1183460:CDS |
| GTGTTGATTAATAGTACAAT+TGG | 0.419845 | 8_1:-18709846 | Msa1183460:CDS |
| GGGGTAAGAGCATGTTGTAA+TGG | 0.423951 | 8_1:+18710287 | None:intergenic |
| AGGTAGAAGAATGAGTTTGA+TGG | 0.423979 | 8_1:+18711264 | None:intergenic |
| GGAACATTGCTTGAGATTGT+TGG | 0.426729 | 8_1:-18708824 | Msa1183460:CDS |
| AGCCAACAAAAGGACAATAA+AGG | 0.427636 | 8_1:-18709978 | Msa1183460:CDS |
| TGAAGTGAATGAACTTGAAA+AGG | 0.430323 | 8_1:-18708634 | Msa1183460:CDS |
| AGAGAAGAGTCTTATGGGGT+TGG | 0.430603 | 8_1:-18709596 | Msa1183460:CDS |
| TAGTATTAGATATGTGCTTA+AGG | 0.445385 | 8_1:-18709793 | Msa1183460:CDS |
| AGGGGATTCCTAGGACTCTC+TGG | 0.448430 | 8_1:-18708946 | Msa1183460:CDS |
| TGTTCCTCCCTTTAACACTT+TGG | 0.450052 | 8_1:+18708841 | None:intergenic |
| TAAATTTGCAGGGGATTCCT+AGG | 0.450136 | 8_1:-18708955 | Msa1183460:intron |
| GGCAACATAATAGGGTTCTT+GGG | 0.451043 | 8_1:+18710095 | None:intergenic |
| AACTCAGTAGTGGAGAGTTT+CGG | 0.451422 | 8_1:-18707762 | Msa1183460:CDS |
| GGGTAAGAGCATGTTGTAAT+GGG | 0.451788 | 8_1:+18710288 | None:intergenic |
| CTGACCCATTTCTTAGGGAA+TGG | 0.457311 | 8_1:-18710127 | Msa1183460:CDS |
| GGAGTTAAATTTGATAGGGT+TGG | 0.457780 | 8_1:+18708862 | None:intergenic |
| TCACATGATTGTTATTTGAT+TGG | 0.457862 | 8_1:-18709753 | Msa1183460:CDS |
| GGATTATGGAGGGTACTTGT+TGG | 0.457892 | 8_1:-18710002 | Msa1183460:CDS |
| TTATCCATTCCCTAAGAAAT+GGG | 0.457943 | 8_1:+18710123 | None:intergenic |
| CACAAGCATTAGACCCTAGT+TGG | 0.458916 | 8_1:-18708611 | Msa1183460:CDS |
| AGAGACACACGTACCTGCTT+TGG | 0.460979 | 8_1:+18708418 | None:intergenic |
| TTATTAATAATCAAGAATAA+TGG | 0.467291 | 8_1:-18707583 | Msa1183460:exon |
| TCATCCAATTCTTGGAAGGT+TGG | 0.472554 | 8_1:+18711204 | None:intergenic |
| TGACCAATCCAAGCAGTTGT+AGG | 0.474791 | 8_1:+18710032 | None:intergenic |
| GTGGAGAGTTTCGGAGCAAA+AGG | 0.475980 | 8_1:-18707753 | Msa1183460:CDS |
| CTTTGGAGTTAAATTTGATA+GGG | 0.475981 | 8_1:+18708858 | None:intergenic |
| CCTTCCAAGAATTGGATGAA+TGG | 0.478873 | 8_1:-18711200 | Msa1183460:intron |
| CAATTTCAACTATAGGCCAC+TGG | 0.483146 | 8_1:+18708897 | None:intergenic |
| GAAGGTTGGAAGTGAAAAGA+AGG | 0.484567 | 8_1:+18711218 | None:intergenic |
| TTGGTCACCATGATGGATTA+TGG | 0.487582 | 8_1:-18710016 | Msa1183460:CDS |
| TTCTACCAACACAACCCAAA+AGG | 0.490202 | 8_1:-18710377 | Msa1183460:CDS |
| TTTCATTACATAGATGTTGA+GGG | 0.491298 | 8_1:+18708580 | None:intergenic |
| ATTTCTACAAAGGCTGCTCA+TGG | 0.495021 | 8_1:-18711354 | None:intergenic |
| AGATCAAGCAGTTAAGTGCT+TGG | 0.495538 | 8_1:-18707638 | Msa1183460:CDS |
| TTAGAGACCCTACAACTGCT+TGG | 0.495629 | 8_1:-18710040 | Msa1183460:CDS |
| TGTGTCTGACCCATTTCTTA+GGG | 0.505150 | 8_1:-18710132 | Msa1183460:CDS |
| GCTTGGATTGGTCACCATGA+TGG | 0.507971 | 8_1:-18710023 | Msa1183460:CDS |
| TATAGTCCCTTGTATCTCAT+AGG | 0.508754 | 8_1:+18710407 | None:intergenic |
| GCCAAAACTAGTAAACCAAA+TGG | 0.525340 | 8_1:+18708525 | None:intergenic |
| ACTTGTTGGAAGCCAACAAA+AGG | 0.525732 | 8_1:-18709988 | Msa1183460:CDS |
| CCATTCATCCAATTCTTGGA+AGG | 0.525937 | 8_1:+18711200 | None:intergenic |
| AAGATGATGTAGTTGTGTTA+GGG | 0.531260 | 8_1:-18707389 | Msa1183460:three_prime_UTR |
| GACCCTACAACTGCTTGGAT+TGG | 0.534224 | 8_1:-18710035 | Msa1183460:CDS |
| ATTCCTGTGTATAAGATGGT+TGG | 0.536262 | 8_1:+18710200 | None:intergenic |
| ACAACCCAAAAGGTGCTACA+TGG | 0.539926 | 8_1:-18710367 | Msa1183460:CDS |
| GACCAATCCAAGCAGTTGTA+GGG | 0.540603 | 8_1:+18710033 | None:intergenic |
| AAATAACAATGAATTAACAT+TGG | 0.543522 | 8_1:-18709679 | Msa1183460:CDS |
| ATCCACAAAAGCTCCATAAG+TGG | 0.546725 | 8_1:+18708294 | None:intergenic |
| TTGATGTCATACGGTTGAGA+AGG | 0.547639 | 8_1:+18710266 | None:intergenic |
| CAACAACCATTGATGTCATA+CGG | 0.548861 | 8_1:+18710257 | None:intergenic |
| TGATGTCATACGGTTGAGAA+GGG | 0.549385 | 8_1:+18710267 | None:intergenic |
| AACACCATAGAGAATAATGA+AGG | 0.550805 | 8_1:+18711304 | None:intergenic |
| TGTTGGAGTAACAGCAGCAC+AGG | 0.555952 | 8_1:-18708807 | Msa1183460:intron |
| GGTGCAAAAGTTAAAGGGGT+AGG | 0.561022 | 8_1:-18708555 | Msa1183460:CDS |
| TCTCAACCGTATGACATCAA+TGG | 0.567091 | 8_1:-18710263 | Msa1183460:CDS |
| TCATGTGTAGTGACCAAAGC+AGG | 0.567201 | 8_1:-18708431 | Msa1183460:intron |
| TAATGAATCTTCAATTCAAG+AGG | 0.569616 | 8_1:-18709571 | Msa1183460:CDS |
| TAGTAACATGTTTCCATCAA+CGG | 0.569627 | 8_1:+18707512 | None:intergenic |
| CGTATGACATCAATGGTTGT+TGG | 0.570931 | 8_1:-18710256 | Msa1183460:CDS |
| AAACCAACCATCTTATACAC+AGG | 0.578300 | 8_1:-18710203 | Msa1183460:CDS |
| ATTAGGTCCTATGAGATACA+AGG | 0.580377 | 8_1:-18710414 | Msa1183460:intron |
| ATTGTACTATTAATCAACAC+TGG | 0.580762 | 8_1:+18709849 | None:intergenic |
| GTCAATTCCTGTGTATAAGA+TGG | 0.584907 | 8_1:+18710196 | None:intergenic |
| TTCCATTATTGAATGCATGA+AGG | 0.585126 | 8_1:+18707673 | None:intergenic |
| AAATGGTGCAAAAGTTAAAG+GGG | 0.592812 | 8_1:-18708559 | Msa1183460:CDS |
| TGGTAGTTATGACACAATCA+AGG | 0.597463 | 8_1:-18709733 | Msa1183460:CDS |
| TTTCTACAAAGGCTGCTCAT+GGG | 0.600547 | 8_1:-18711353 | None:intergenic |
| AACTCCAAAGTGTTAAAGGG+AGG | 0.603540 | 8_1:-18708845 | Msa1183460:CDS |
| TTATCATTGATTGCCAACGT+TGG | 0.604918 | 8_1:+18707702 | None:intergenic |
| GGCAAGAGTTTATCCAACGT+TGG | 0.609306 | 8_1:-18707715 | Msa1183460:CDS |
| ACAGATAGATAACTCAGTAG+TGG | 0.609325 | 8_1:-18707772 | Msa1183460:intron |
| CTGGGAAGCAATTGATCCAG+TGG | 0.619077 | 8_1:-18708913 | Msa1183460:CDS |
| AGCAACAATAGCATTGTTTG+GGG | 0.625200 | 8_1:-18710344 | Msa1183460:CDS |
| GTACCCTCCATAATCCATCA+TGG | 0.639221 | 8_1:+18710009 | None:intergenic |
| GTCACCATGATGGATTATGG+AGG | 0.648186 | 8_1:-18710013 | Msa1183460:CDS |
| TTAGGTCCTATGAGATACAA+GGG | 0.659987 | 8_1:-18710413 | Msa1183460:intron |
| TCACCATGATGGATTATGGA+GGG | 0.660154 | 8_1:-18710012 | Msa1183460:CDS |
| GATGTCATACGGTTGAGAAG+GGG | 0.678736 | 8_1:+18710268 | None:intergenic |
| TTTGTCATTCGAGAGAAATG+TGG | 0.679370 | 8_1:+18710223 | None:intergenic |
| GCAACAATAGCATTGTTTGG+GGG | 0.690248 | 8_1:-18710343 | Msa1183460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTAAAATAATTAAA+AGG | - | chr8_1:18709427-18709446 | Msa1183460:intron | 0.0% |
| !!! | TTTTATTTTTGTTTTTCTAA+TGG | - | chr8_1:18707544-18707563 | Msa1183460:three_prime_UTR | 10.0% |
| !!! | AAAGTAAAGATTTTATTAAT+TGG | - | chr8_1:18708702-18708721 | Msa1183460:intron | 10.0% |
| !!! | AAGTAAAGATTTTATTAATT+GGG | - | chr8_1:18708703-18708722 | Msa1183460:intron | 10.0% |
| !!! | CTAAGTAAAAATAATAATTT+TGG | + | chr8_1:18709293-18709312 | None:intergenic | 10.0% |
| !!! | TGTTATTTTTGTTATTTATA+GGG | + | chr8_1:18710686-18710705 | None:intergenic | 10.0% |
| !!! | TTGTTATTTTTGTTATTTAT+AGG | + | chr8_1:18710687-18710706 | None:intergenic | 10.0% |
| !! | TTATTAATAATCAAGAATAA+TGG | - | chr8_1:18711057-18711076 | Msa1183460:intron | 10.0% |
| !!! | AAAATTCACTATATTTTTAA+CGG | + | chr8_1:18711339-18711358 | None:intergenic | 10.0% |
| !! | ATATGTTTGATTCAAATTAA+AGG | + | chr8_1:18707399-18707418 | None:intergenic | 15.0% |
| !! | CAAGAGTAAAAAAAAAAAAA+AGG | + | chr8_1:18707588-18707607 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTTTTTACTCT+TGG | - | chr8_1:18707586-18707605 | Msa1183460:exon | 15.0% |
| !!! | AAATATAATCAACTTCTTTT+TGG | - | chr8_1:18707923-18707942 | Msa1183460:intron | 15.0% |
| !!! | AATCCAATATAACTTTTTTT+AGG | - | chr8_1:18707958-18707977 | Msa1183460:intron | 15.0% |
| !!! | ATCCAATATAACTTTTTTTA+GGG | - | chr8_1:18707959-18707978 | Msa1183460:intron | 15.0% |
| !!! | ATCACAATATTTTAATTCTA+TGG | + | chr8_1:18708079-18708098 | None:intergenic | 15.0% |
| !! | ATAGAATTAAAATATTGTGA+TGG | - | chr8_1:18708078-18708097 | Msa1183460:intron | 15.0% |
| !!! | TTAATTTTGTTAACAATACT+TGG | + | chr8_1:18708569-18708588 | None:intergenic | 15.0% |
| !! | AAATAACAATGAATTAACAT+TGG | - | chr8_1:18708961-18708980 | Msa1183460:intron | 15.0% |
| !!! | TTTTATTTTTTGAAAAGGTT+TGG | - | chr8_1:18709176-18709195 | Msa1183460:intron | 15.0% |
| !!! | AATTTTTCAATTTCAACTAT+AGG | + | chr8_1:18709753-18709772 | None:intergenic | 15.0% |
| !! | AAAAGAAATCAAAAGTTAAT+GGG | + | chr8_1:18709961-18709980 | None:intergenic | 15.0% |
| !! | AAAAAGAAATCAAAAGTTAA+TGG | + | chr8_1:18709962-18709981 | None:intergenic | 15.0% |
| !!! | ATATACAAGAATTTTCTTTA+AGG | - | chr8_1:18710156-18710175 | Msa1183460:CDS | 15.0% |
| !!! | AATTTTCTTTAAGGTATTTA+GGG | - | chr8_1:18710165-18710184 | Msa1183460:CDS | 15.0% |
| !!! | AATAGTTCAAATTTAAAGTT+CGG | + | chr8_1:18710575-18710594 | None:intergenic | 15.0% |
| !! | TAACAAAAATAACAAAATCA+TGG | - | chr8_1:18710692-18710711 | Msa1183460:intron | 15.0% |
| !! | AATAAAAGAATCAAAGAATG+TGG | + | chr8_1:18707531-18707550 | None:intergenic | 20.0% |
| !!! | TCCAATATAACTTTTTTTAG+GGG | - | chr8_1:18707960-18707979 | Msa1183460:intron | 20.0% |
| !!! | ATTTTTTTGGCTGAATAAAA+AGG | + | chr8_1:18708743-18708762 | None:intergenic | 20.0% |
| !!! | TTTTATTCAGCCAAAAAAAT+TGG | - | chr8_1:18708743-18708762 | Msa1183460:intron | 20.0% |
| !!! | TTGGTTTTAAGATATGATTA+TGG | - | chr8_1:18708980-18708999 | Msa1183460:intron | 20.0% |
| !! | TTACGATGTTATTACAATTA+GGG | + | chr8_1:18709500-18709519 | None:intergenic | 20.0% |
| !! | ATTACGATGTTATTACAATT+AGG | + | chr8_1:18709501-18709520 | None:intergenic | 20.0% |
| !! | ATAATTGGTTAGATGTTATA+TGG | + | chr8_1:18709634-18709653 | None:intergenic | 20.0% |
| !! | TATAACATCTAACCAATTAT+TGG | - | chr8_1:18709634-18709653 | Msa1183460:CDS | 20.0% |
| !!! | GAATTTTCTTTAAGGTATTT+AGG | - | chr8_1:18710164-18710183 | Msa1183460:CDS | 20.0% |
| !! | TAACAAAGTTAGAAAATATG+TGG | - | chr8_1:18710483-18710502 | Msa1183460:intron | 20.0% |
| !! | TTTTCCTTCATTATTCTCTA+TGG | - | chr8_1:18707332-18707351 | Msa1183460:three_prime_UTR | 25.0% |
| !!! | TTTTGCTATTTTCACCAAAA+GGG | - | chr8_1:18707672-18707691 | Msa1183460:CDS | 25.0% |
| ! | ATGCAAGCAAATTATTACAA+AGG | - | chr8_1:18707869-18707888 | Msa1183460:intron | 25.0% |
| ! | TCCCCTAAAAAAAGTTATAT+TGG | + | chr8_1:18707964-18707983 | None:intergenic | 25.0% |
| ! | GACTCATTCAATTAATGATT+TGG | - | chr8_1:18707982-18708001 | Msa1183460:intron | 25.0% |
| ! | GTGTATATATAGCTAATCTA+GGG | + | chr8_1:18708151-18708170 | None:intergenic | 25.0% |
| ! | AGTGTATATATAGCTAATCT+AGG | + | chr8_1:18708152-18708171 | None:intergenic | 25.0% |
| ! | TTTCAAAAGATCTAGTGAAT+TGG | - | chr8_1:18708327-18708346 | Msa1183460:intron | 25.0% |
| !!! | GTATAGCTAAATTTTGAGTT+TGG | + | chr8_1:18708481-18708500 | None:intergenic | 25.0% |
| ! | ATTGTACTATTAATCAACAC+TGG | + | chr8_1:18708794-18708813 | None:intergenic | 25.0% |
| !!! | GTGTTGATTAATAGTACAAT+TGG | - | chr8_1:18708794-18708813 | Msa1183460:intron | 25.0% |
| ! | TAGTATTAGATATGTGCTTA+AGG | - | chr8_1:18708847-18708866 | Msa1183460:CDS | 25.0% |
| !!! | TCACATGATTGTTATTTGAT+TGG | - | chr8_1:18708887-18708906 | Msa1183460:CDS | 25.0% |
| !! | TTTTGCTCAAATTCCTTTTT+AGG | + | chr8_1:18708944-18708963 | None:intergenic | 25.0% |
| !! | AAAAAAGAGAAGAGTCTTAT+GGG | - | chr8_1:18709039-18709058 | Msa1183460:intron | 25.0% |
| ! | TAATGAATCTTCAATTCAAG+AGG | - | chr8_1:18709069-18709088 | Msa1183460:intron | 25.0% |
| !!! | AAGGACGTTATTTTATTGTT+TGG | - | chr8_1:18709446-18709465 | Msa1183460:intron | 25.0% |
| ! | ATAATTAAAACATATGCCCT+AGG | - | chr8_1:18709593-18709612 | Msa1183460:CDS | 25.0% |
| !!! | ATCTAACCAATTATTGGTTT+CGG | - | chr8_1:18709640-18709659 | Msa1183460:CDS | 25.0% |
| ! | ACTCATATACATAAATTTGC+AGG | - | chr8_1:18709674-18709693 | Msa1183460:CDS | 25.0% |
| ! | CTCATATACATAAATTTGCA+GGG | - | chr8_1:18709675-18709694 | Msa1183460:CDS | 25.0% |
| ! | TCATATACATAAATTTGCAG+GGG | - | chr8_1:18709676-18709695 | Msa1183460:CDS | 25.0% |
| !!! | CTTTGGAGTTAAATTTGATA+GGG | + | chr8_1:18709785-18709804 | None:intergenic | 25.0% |
| !!! | ACTTTGGAGTTAAATTTGAT+AGG | + | chr8_1:18709786-18709805 | None:intergenic | 25.0% |
| !! | ATTTAACTCCAAAGTGTTAA+AGG | - | chr8_1:18709791-18709810 | Msa1183460:CDS | 25.0% |
| !! | TTTAACTCCAAAGTGTTAAA+GGG | - | chr8_1:18709792-18709811 | Msa1183460:CDS | 25.0% |
| !!! | AACTTTTGATTTCTTTTTGC+AGG | - | chr8_1:18709964-18709983 | Msa1183460:CDS | 25.0% |
| ! | TTTCATTACATAGATGTTGA+GGG | + | chr8_1:18710063-18710082 | None:intergenic | 25.0% |
| !! | TTTTCATTACATAGATGTTG+AGG | + | chr8_1:18710064-18710083 | None:intergenic | 25.0% |
| ! | CAACATCTATGTAATGAAAA+TGG | - | chr8_1:18710064-18710083 | Msa1183460:CDS | 25.0% |
| ! | AAAATGGTGCAAAAGTTAAA+GGG | - | chr8_1:18710080-18710099 | Msa1183460:CDS | 25.0% |
| !! | AATTTGATGGATAATGAAAG+AGG | + | chr8_1:18710248-18710267 | None:intergenic | 25.0% |
| ! | TTAAAATTGACACTTTGGTT+TGG | + | chr8_1:18710275-18710294 | None:intergenic | 25.0% |
| ! | AAATCATGGAAACTAAGAAA+TGG | - | chr8_1:18710706-18710725 | Msa1183460:intron | 25.0% |
| ! | ATCATTCTATAACATGATGT+GGG | - | chr8_1:18710778-18710797 | Msa1183460:intron | 25.0% |
| ! | AAGAATAATGGTAGAGATAA+TGG | - | chr8_1:18711069-18711088 | Msa1183460:intron | 25.0% |
| !! | GTCAATGTTAATCCTTTTAT+TGG | - | chr8_1:18711182-18711201 | Msa1183460:intron | 25.0% |
| !! | TGTTTTCAAATGCCAATAAA+AGG | + | chr8_1:18711197-18711216 | None:intergenic | 25.0% |
| AACACCATAGAGAATAATGA+AGG | + | chr8_1:18707339-18707358 | None:intergenic | 30.0% | |
| AATACCATTCATCCAATTCT+TGG | + | chr8_1:18707447-18707466 | None:intergenic | 30.0% | |
| ATGTCTAACAACATTAAAGG+AGG | + | chr8_1:18707508-18707527 | None:intergenic | 30.0% | |
| TGGATGTCTAACAACATTAA+AGG | + | chr8_1:18707511-18707530 | None:intergenic | 30.0% | |
| !!! | CTTTTGCTATTTTCACCAAA+AGG | - | chr8_1:18707671-18707690 | Msa1183460:CDS | 30.0% |
| !!! | TTTGCTATTTTCACCAAAAG+GGG | - | chr8_1:18707673-18707692 | Msa1183460:CDS | 30.0% |
| ! | CAAATTCATTTAACCCCTTT+TGG | + | chr8_1:18707689-18707708 | None:intergenic | 30.0% |
| TTATGTAAGTACAACCTAGT+TGG | - | chr8_1:18707733-18707752 | Msa1183460:CDS | 30.0% | |
| CACGCACTTTAAATAAAAGT+AGG | + | chr8_1:18707806-18707825 | None:intergenic | 30.0% | |
| !!! | AATTTTGAGTTTGGTGTTGA+TGG | + | chr8_1:18708472-18708491 | None:intergenic | 30.0% |
| TTATCCATTCCCTAAGAAAT+GGG | + | chr8_1:18708520-18708539 | None:intergenic | 30.0% | |
| TTTATCCATTCCCTAAGAAA+TGG | + | chr8_1:18708521-18708540 | None:intergenic | 30.0% | |
| CAATACTTGGCAACATAATA+GGG | + | chr8_1:18708556-18708575 | None:intergenic | 30.0% | |
| ACAATACTTGGCAACATAAT+AGG | + | chr8_1:18708557-18708576 | None:intergenic | 30.0% | |
| ! | TTCCTTTATTGTCCTTTTGT+TGG | + | chr8_1:18708667-18708686 | None:intergenic | 30.0% |
| AGCCAAAAAAATTGGAATGT+TGG | - | chr8_1:18708751-18708770 | Msa1183460:intron | 30.0% | |
| !!! | CTCCAACATTCCAATTTTTT+TGG | + | chr8_1:18708756-18708775 | None:intergenic | 30.0% |
| ATCAACACTGGAAAAAAATC+AGG | + | chr8_1:18708782-18708801 | None:intergenic | 30.0% | |
| GGACATGTTTATTCCTAAAA+AGG | - | chr8_1:18708928-18708947 | Msa1183460:CDS | 30.0% | |
| CAAAAAAGAGAAGAGTCTTA+TGG | - | chr8_1:18709038-18709057 | Msa1183460:intron | 30.0% | |
| ! | AAAAAGAGAAGAGTCTTATG+GGG | - | chr8_1:18709040-18709059 | Msa1183460:intron | 30.0% |
| TAGTTTGATGAATTGTAGTC+AGG | - | chr8_1:18709207-18709226 | Msa1183460:intron | 30.0% | |
| AGTTTGATGAATTGTAGTCA+GGG | - | chr8_1:18709208-18709227 | Msa1183460:intron | 30.0% | |
| CCTAGGATACCATTAATTTA+GGG | - | chr8_1:18709263-18709282 | Msa1183460:intron | 30.0% | |
| CTAGGATACCATTAATTTAG+GGG | - | chr8_1:18709264-18709283 | Msa1183460:intron | 30.0% | |
| !!! | CCTAAGATTTTTGGTGTTTT+GGG | + | chr8_1:18709472-18709491 | None:intergenic | 30.0% |
| !!! | TCCTAAGATTTTTGGTGTTT+TGG | + | chr8_1:18709473-18709492 | None:intergenic | 30.0% |
| GATGTTATTACAATTAGGGT+CGG | + | chr8_1:18709496-18709515 | None:intergenic | 30.0% | |
| CAATAACCGAAACCAATAAT+TGG | + | chr8_1:18709649-18709668 | None:intergenic | 30.0% | |
| TGAAGTGAATGAACTTGAAA+AGG | - | chr8_1:18710006-18710025 | Msa1183460:CDS | 30.0% | |
| GAAAATGGTGCAAAAGTTAA+AGG | - | chr8_1:18710079-18710098 | Msa1183460:CDS | 30.0% | |
| AAATGGTGCAAAAGTTAAAG+GGG | - | chr8_1:18710081-18710100 | Msa1183460:CDS | 30.0% | |
| !! | ACCATTTGGTTTACTAGTTT+TGG | - | chr8_1:18710114-18710133 | Msa1183460:CDS | 30.0% |
| !!! | TTTACTAGTTTTGGCTTCAA+AGG | - | chr8_1:18710123-18710142 | Msa1183460:CDS | 30.0% |
| !! | TTGGTTTGGTAAGAATTTGA+TGG | + | chr8_1:18710261-18710280 | None:intergenic | 30.0% |
| GTTGCTTAAAATTGACACTT+TGG | + | chr8_1:18710280-18710299 | None:intergenic | 30.0% | |
| ATAAGATGAACTTGCAAAAG+TGG | - | chr8_1:18710435-18710454 | Msa1183460:intron | 30.0% | |
| TCTAACTTTGTTAATACCTC+AGG | + | chr8_1:18710476-18710495 | None:intergenic | 30.0% | |
| GATCATTCTATAACATGATG+TGG | - | chr8_1:18710777-18710796 | Msa1183460:intron | 30.0% | |
| ATCTATCTGTGAGAAATAGA+GGG | + | chr8_1:18710858-18710877 | None:intergenic | 30.0% | |
| TATCTATCTGTGAGAAATAG+AGG | + | chr8_1:18710859-18710878 | None:intergenic | 30.0% | |
| AAAAGGAAAAACATGCATCA+CGG | - | chr8_1:18710904-18710923 | Msa1183460:intron | 30.0% | |
| TTCCATTATTGAATGCATGA+AGG | + | chr8_1:18710970-18710989 | None:intergenic | 30.0% | |
| TAGTAACATGTTTCCATCAA+CGG | + | chr8_1:18711131-18711150 | None:intergenic | 30.0% | |
| AAGATGATGTAGTTGTGTTA+GGG | - | chr8_1:18711251-18711270 | Msa1183460:CDS | 30.0% | |
| AGGTAGAAGAATGAGTTTGA+TGG | + | chr8_1:18707379-18707398 | None:intergenic | 35.0% | |
| ! | TTTTTACTCTTGGCGTGATA+TGG | - | chr8_1:18707596-18707615 | Msa1183460:exon | 35.0% |
| CAAGAGTAGAACTAACCATT+AGG | + | chr8_1:18707640-18707659 | None:intergenic | 35.0% | |
| ATTAGGTCCTATGAGATACA+AGG | - | chr8_1:18708226-18708245 | Msa1183460:intron | 35.0% | |
| TTAGGTCCTATGAGATACAA+GGG | - | chr8_1:18708227-18708246 | Msa1183460:intron | 35.0% | |
| TATAGTCCCTTGTATCTCAT+AGG | + | chr8_1:18708236-18708255 | None:intergenic | 35.0% | |
| ! | GGTTGTGTTGGTAGAAAATA+TGG | + | chr8_1:18708259-18708278 | None:intergenic | 35.0% |
| GAGCAACAATAGCATTGTTT+GGG | - | chr8_1:18708295-18708314 | Msa1183460:CDS | 35.0% | |
| AGCAACAATAGCATTGTTTG+GGG | - | chr8_1:18708296-18708315 | Msa1183460:CDS | 35.0% | |
| CAACAACCATTGATGTCATA+CGG | + | chr8_1:18708386-18708405 | None:intergenic | 35.0% | |
| TTTGTCATTCGAGAGAAATG+TGG | + | chr8_1:18708420-18708439 | None:intergenic | 35.0% | |
| AAACCAACCATCTTATACAC+AGG | - | chr8_1:18708437-18708456 | Msa1183460:CDS | 35.0% | |
| ATTCCTGTGTATAAGATGGT+TGG | + | chr8_1:18708443-18708462 | None:intergenic | 35.0% | |
| GTCAATTCCTGTGTATAAGA+TGG | + | chr8_1:18708447-18708466 | None:intergenic | 35.0% | |
| AGCCAACAAAAGGACAATAA+AGG | - | chr8_1:18708662-18708681 | Msa1183460:intron | 35.0% | |
| TGGTAGTTATGACACAATCA+AGG | - | chr8_1:18708907-18708926 | Msa1183460:CDS | 35.0% | |
| CAAGAGGATGATGTACAAAA+AGG | - | chr8_1:18709085-18709104 | Msa1183460:intron | 35.0% | |
| AGGATGATGTACAAAAAGGA+TGG | - | chr8_1:18709089-18709108 | Msa1183460:intron | 35.0% | |
| GTTTGATGAATTGTAGTCAG+GGG | - | chr8_1:18709209-18709228 | Msa1183460:intron | 35.0% | |
| GCCTAGGATACCATTAATTT+AGG | - | chr8_1:18709262-18709281 | Msa1183460:intron | 35.0% | |
| CCCTAAATTAATGGTATCCT+AGG | + | chr8_1:18709266-18709285 | None:intergenic | 35.0% | |
| TTTGGTTGCCCCTAAATTAA+TGG | + | chr8_1:18709275-18709294 | None:intergenic | 35.0% | |
| CCCAAAACACCAAAAATCTT+AGG | - | chr8_1:18709469-18709488 | Msa1183460:intron | 35.0% | |
| GGAGTTAAATTTGATAGGGT+TGG | + | chr8_1:18709781-18709800 | None:intergenic | 35.0% | |
| GCAAAACAAAAATCACACAC+TGG | + | chr8_1:18709865-18709884 | None:intergenic | 35.0% | |
| ATTAGACCCTAGTTGGAAAA+TGG | - | chr8_1:18710036-18710055 | Msa1183460:CDS | 35.0% | |
| AAAGTTAAAGGGGTAGGATT+AGG | - | chr8_1:18710091-18710110 | Msa1183460:CDS | 35.0% | |
| GCCAAAACTAGTAAACCAAA+TGG | + | chr8_1:18710118-18710137 | None:intergenic | 35.0% | |
| GCAACTTATGTATCATCACT+AGG | - | chr8_1:18710295-18710314 | Msa1183460:CDS | 35.0% | |
| AAGAACGATTTGACCACTTA+TGG | - | chr8_1:18710333-18710352 | Msa1183460:CDS | 35.0% | |
| GTATATGCTATTACAACCTG+AGG | - | chr8_1:18710457-18710476 | Msa1183460:intron | 35.0% | |
| GTTAGAAAATATGTGGTCGT+TGG | - | chr8_1:18710490-18710509 | Msa1183460:intron | 35.0% | |
| ACAGATAGATAACTCAGTAG+TGG | - | chr8_1:18710868-18710887 | Msa1183460:intron | 35.0% | |
| ! | TTATCATTGATTGCCAACGT+TGG | + | chr8_1:18710941-18710960 | None:intergenic | 35.0% |
| CACCTTCATGCATTCAATAA+TGG | - | chr8_1:18710965-18710984 | Msa1183460:intron | 35.0% | |
| GAAGATGATGTAGTTGTGTT+AGG | - | chr8_1:18711250-18711269 | Msa1183460:CDS | 35.0% | |
| ! | TGTGTTAGGGCAATTTTGAA+TGG | - | chr8_1:18711264-18711283 | Msa1183460:CDS | 35.0% |
| GAAGGTTGGAAGTGAAAAGA+AGG | + | chr8_1:18707425-18707444 | None:intergenic | 40.0% | |
| ACTTCCAACCTTCCAAGAAT+TGG | - | chr8_1:18707432-18707451 | Msa1183460:three_prime_UTR | 40.0% | |
| TCATCCAATTCTTGGAAGGT+TGG | + | chr8_1:18707439-18707458 | None:intergenic | 40.0% | |
| CCATTCATCCAATTCTTGGA+AGG | + | chr8_1:18707443-18707462 | None:intergenic | 40.0% | |
| CCTTCCAAGAATTGGATGAA+TGG | - | chr8_1:18707440-18707459 | Msa1183460:three_prime_UTR | 40.0% | |
| ! | GCTCTTTTTGCATGTGCATT+AGG | - | chr8_1:18708209-18708228 | Msa1183460:intron | 40.0% |
| TTCTACCAACACAACCCAAA+AGG | - | chr8_1:18708263-18708282 | Msa1183460:intron | 40.0% | |
| GGAGCAACAATAGCATTGTT+TGG | - | chr8_1:18708294-18708313 | Msa1183460:CDS | 40.0% | |
| GCAACAATAGCATTGTTTGG+GGG | - | chr8_1:18708297-18708316 | Msa1183460:CDS | 40.0% | |
| ! | GGGTAAGAGCATGTTGTAAT+GGG | + | chr8_1:18708355-18708374 | None:intergenic | 40.0% |
| TGATGTCATACGGTTGAGAA+GGG | + | chr8_1:18708376-18708395 | None:intergenic | 40.0% | |
| TTGATGTCATACGGTTGAGA+AGG | + | chr8_1:18708377-18708396 | None:intergenic | 40.0% | |
| TCTCAACCGTATGACATCAA+TGG | - | chr8_1:18708377-18708396 | Msa1183460:intron | 40.0% | |
| CGTATGACATCAATGGTTGT+TGG | - | chr8_1:18708384-18708403 | Msa1183460:intron | 40.0% | |
| ATGTGTCTGACCCATTTCTT+AGG | - | chr8_1:18708507-18708526 | Msa1183460:CDS | 40.0% | |
| TGTGTCTGACCCATTTCTTA+GGG | - | chr8_1:18708508-18708527 | Msa1183460:CDS | 40.0% | |
| GGCAACATAATAGGGTTCTT+GGG | + | chr8_1:18708548-18708567 | None:intergenic | 40.0% | |
| TGGCAACATAATAGGGTTCT+TGG | + | chr8_1:18708549-18708568 | None:intergenic | 40.0% | |
| !! | TTGGTCACCATGATGGATTA+TGG | - | chr8_1:18708624-18708643 | Msa1183460:CDS | 40.0% |
| !! | TCACCATGATGGATTATGGA+GGG | - | chr8_1:18708628-18708647 | Msa1183460:CDS | 40.0% |
| ! | ACTTGTTGGAAGCCAACAAA+AGG | - | chr8_1:18708652-18708671 | Msa1183460:CDS | 40.0% |
| GATGTACAAAAAGGATGGTC+TGG | - | chr8_1:18709094-18709113 | Msa1183460:intron | 40.0% | |
| ! | AAAAGGATGGTCTGGAATTC+AGG | - | chr8_1:18709102-18709121 | Msa1183460:intron | 40.0% |
| TAAATTTGCAGGGGATTCCT+AGG | - | chr8_1:18709685-18709704 | Msa1183460:CDS | 40.0% | |
| ! | ACTCTCTGGCTTGAAAAATC+TGG | - | chr8_1:18709708-18709727 | Msa1183460:CDS | 40.0% |
| ! | CTCTCTGGCTTGAAAAATCT+GGG | - | chr8_1:18709709-18709728 | Msa1183460:CDS | 40.0% |
| CAATTTCAACTATAGGCCAC+TGG | + | chr8_1:18709746-18709765 | None:intergenic | 40.0% | |
| ! | AACTCCAAAGTGTTAAAGGG+AGG | - | chr8_1:18709795-18709814 | Msa1183460:CDS | 40.0% |
| TGTTCCTCCCTTTAACACTT+TGG | + | chr8_1:18709802-18709821 | None:intergenic | 40.0% | |
| GGAACATTGCTTGAGATTGT+TGG | - | chr8_1:18709816-18709835 | Msa1183460:CDS | 40.0% | |
| ATCCACAAAAGCTCCATAAG+TGG | + | chr8_1:18710349-18710368 | None:intergenic | 40.0% | |
| ! | TTATGGAGCTTTTGTGGATG+TGG | - | chr8_1:18710350-18710369 | Msa1183460:CDS | 40.0% |
| TTGACAACTCCTCATAGACA+GGG | + | chr8_1:18710377-18710396 | None:intergenic | 40.0% | |
| ATTGACAACTCCTCATAGAC+AGG | + | chr8_1:18710378-18710397 | None:intergenic | 40.0% | |
| GGAGTTGTCAATAAGAAGCT+TGG | - | chr8_1:18710386-18710405 | Msa1183460:CDS | 40.0% | |
| ! | AACTCAGTAGTGGAGAGTTT+CGG | - | chr8_1:18710878-18710897 | Msa1183460:intron | 40.0% |
| AGATCAAGCAGTTAAGTGCT+TGG | - | chr8_1:18711002-18711021 | Msa1183460:intron | 40.0% | |
| CATGGGAACTTCTTGGTTGT+TGG | - | chr8_1:18707304-18707323 | Msa1183460:three_prime_UTR | 45.0% | |
| TTACTCTTGGCGTGATATGG+TGG | - | chr8_1:18707599-18707618 | Msa1183460:CDS | 45.0% | |
| ATCGGACTTGCAGATCCTAA+TGG | - | chr8_1:18707622-18707641 | Msa1183460:CDS | 45.0% | |
| !! | ACAACCTAGTTGGTAGACGT+AGG | - | chr8_1:18707743-18707762 | Msa1183460:CDS | 45.0% |
| !! | CAACCTAGTTGGTAGACGTA+GGG | - | chr8_1:18707744-18707763 | Msa1183460:CDS | 45.0% |
| TTTCCCTACGTCTACCAACT+AGG | + | chr8_1:18707750-18707769 | None:intergenic | 45.0% | |
| GGTAGACGTAGGGAAATTGA+CGG | - | chr8_1:18707754-18707773 | Msa1183460:CDS | 45.0% | |
| !!! | TAGCACCTTTTGGGTTGTGT+TGG | + | chr8_1:18708271-18708290 | None:intergenic | 45.0% |
| !! | ACAACCCAAAAGGTGCTACA+TGG | - | chr8_1:18708273-18708292 | Msa1183460:intron | 45.0% |
| ! | TGCTCCATGTAGCACCTTTT+GGG | + | chr8_1:18708280-18708299 | None:intergenic | 45.0% |
| ! | TTGCTCCATGTAGCACCTTT+TGG | + | chr8_1:18708281-18708300 | None:intergenic | 45.0% |
| ! | GGGGTAAGAGCATGTTGTAA+TGG | + | chr8_1:18708356-18708375 | None:intergenic | 45.0% |
| GATGTCATACGGTTGAGAAG+GGG | + | chr8_1:18708375-18708394 | None:intergenic | 45.0% | |
| GACATCAATGGTTGTTGGTC+AGG | - | chr8_1:18708389-18708408 | Msa1183460:intron | 45.0% | |
| CTGACCCATTTCTTAGGGAA+TGG | - | chr8_1:18708513-18708532 | Msa1183460:CDS | 45.0% | |
| TTAGAGACCCTACAACTGCT+TGG | - | chr8_1:18708600-18708619 | Msa1183460:CDS | 45.0% | |
| GACCAATCCAAGCAGTTGTA+GGG | + | chr8_1:18708610-18708629 | None:intergenic | 45.0% | |
| TGACCAATCCAAGCAGTTGT+AGG | + | chr8_1:18708611-18708630 | None:intergenic | 45.0% | |
| !! | GTCACCATGATGGATTATGG+AGG | - | chr8_1:18708627-18708646 | Msa1183460:CDS | 45.0% |
| GTACCCTCCATAATCCATCA+TGG | + | chr8_1:18708634-18708653 | None:intergenic | 45.0% | |
| !! | GGATTATGGAGGGTACTTGT+TGG | - | chr8_1:18708638-18708657 | Msa1183460:CDS | 45.0% |
| ! | AGAGAAGAGTCTTATGGGGT+TGG | - | chr8_1:18709044-18709063 | Msa1183460:intron | 45.0% |
| ! | AGGGTCGGTCCTAAGATTTT+TGG | + | chr8_1:18709481-18709500 | None:intergenic | 45.0% |
| AACATATGCCCTAGGACTCT+TGG | - | chr8_1:18709601-18709620 | Msa1183460:CDS | 45.0% | |
| !! | TTTTCAAGCCAGAGAGTCCT+AGG | + | chr8_1:18709705-18709724 | None:intergenic | 45.0% |
| CACAAGCATTAGACCCTAGT+TGG | - | chr8_1:18710029-18710048 | Msa1183460:CDS | 45.0% | |
| ! | GAGGGTCCATTTTCCAACTA+GGG | + | chr8_1:18710045-18710064 | None:intergenic | 45.0% |
| ! | TGAGGGTCCATTTTCCAACT+AGG | + | chr8_1:18710046-18710065 | None:intergenic | 45.0% |
| GGTGCAAAAGTTAAAGGGGT+AGG | - | chr8_1:18710085-18710104 | Msa1183460:CDS | 45.0% | |
| TCATGTGTAGTGACCAAAGC+AGG | - | chr8_1:18710209-18710228 | Msa1183460:CDS | 45.0% | |
| ! | GACCACTTATGGAGCTTTTG+TGG | - | chr8_1:18710344-18710363 | Msa1183460:CDS | 45.0% |
| TTCATGCCTCATCACATCAG+TGG | + | chr8_1:18710619-18710638 | None:intergenic | 45.0% | |
| TTGCCAACGATAATCGATCC+TGG | - | chr8_1:18710648-18710667 | Msa1183460:intron | 45.0% | |
| GAACCAGGATCGATTATCGT+TGG | + | chr8_1:18710654-18710673 | None:intergenic | 45.0% | |
| ATAGGGACGAGAATAGAACC+AGG | + | chr8_1:18710669-18710688 | None:intergenic | 45.0% | |
| GGCAAGAGTTTATCCAACGT+TGG | - | chr8_1:18710925-18710944 | Msa1183460:intron | 45.0% | |
| TCTTCTTGTCTAGCCGTTGA+TGG | - | chr8_1:18711115-18711134 | Msa1183460:intron | 45.0% | |
| !!! | TTATTTTTTATTTTTTGAAA+AGG | - | chr8_1:18709171-18709190 | Msa1183460:intron | 5.0% |
| !!! | ATATAGATATTTTTTTAATT+CGG | - | chr8_1:18709324-18709343 | Msa1183460:intron | 5.0% |
| !! | AATTAATTAGTTAAAATAAT+TGG | - | chr8_1:18709914-18709933 | Msa1183460:CDS | 5.0% |
| !! | CTTGGCGTGATATGGTGGAT+CGG | - | chr8_1:18707604-18707623 | Msa1183460:CDS | 50.0% |
| ACGTAGGGAAATTGACGGCA+TGG | - | chr8_1:18707759-18707778 | Msa1183460:CDS | 50.0% | |
| GACCCTACAACTGCTTGGAT+TGG | - | chr8_1:18708605-18708624 | Msa1183460:CDS | 50.0% | |
| !! | GCTTGGATTGGTCACCATGA+TGG | - | chr8_1:18708617-18708636 | Msa1183460:CDS | 50.0% |
| GACTCAAGCCAAGAGTCCTA+GGG | + | chr8_1:18709612-18709631 | None:intergenic | 50.0% | |
| CTGGGAAGCAATTGATCCAG+TGG | - | chr8_1:18709727-18709746 | Msa1183460:CDS | 50.0% | |
| TGTTGGAGTAACAGCAGCAC+AGG | - | chr8_1:18709833-18709852 | Msa1183460:CDS | 50.0% | |
| GGGGTAGGATTAGGACCATT+TGG | - | chr8_1:18710100-18710119 | Msa1183460:CDS | 50.0% | |
| AGAGACACACGTACCTGCTT+TGG | + | chr8_1:18710225-18710244 | None:intergenic | 50.0% | |
| TGCCTCATCACATCAGTGGT+CGG | + | chr8_1:18710615-18710634 | None:intergenic | 50.0% | |
| GTGGAGAGTTTCGGAGCAAA+AGG | - | chr8_1:18710887-18710906 | Msa1183460:intron | 50.0% | |
| GGCTGCTCATGGGAACTTCT+TGG | - | chr8_1:18707297-18707316 | Msa1183460:three_prime_UTR | 55.0% | |
| GGACTCAAGCCAAGAGTCCT+AGG | + | chr8_1:18709613-18709632 | None:intergenic | 55.0% | |
| AGGGGATTCCTAGGACTCTC+TGG | - | chr8_1:18709694-18709713 | Msa1183460:CDS | 55.0% | |
| GGATGTGGACCCTGTCTATG+AGG | - | chr8_1:18710365-18710384 | Msa1183460:CDS | 55.0% | |
| TCACATCAGTGGTCGGACGT+TGG | + | chr8_1:18710608-18710627 | None:intergenic | 55.0% | |
| GTCCGACCACTGATGTGATG+AGG | - | chr8_1:18710610-18710629 | Msa1183460:intron | 55.0% | |
| TCAGGGGTGACCCTGAGAGT+TGG | - | chr8_1:18709225-18709244 | Msa1183460:intron | 60.0% | |
| GGGGTGACCCTGAGAGTTGG+CGG | - | chr8_1:18709228-18709247 | Msa1183460:intron | 65.0% | |
| GGGTGACCCTGAGAGTTGGC+GGG | - | chr8_1:18709229-18709248 | Msa1183460:intron | 65.0% | |
| TGACCCTGAGAGTTGGCGGG+AGG | - | chr8_1:18709232-18709251 | Msa1183460:intron | 65.0% | |
| GACCCTGAGAGTTGGCGGGA+GGG | - | chr8_1:18709233-18709252 | Msa1183460:intron | 65.0% | |
| ACCCTGAGAGTTGGCGGGAG+GGG | - | chr8_1:18709234-18709253 | Msa1183460:intron | 65.0% | |
| ACCCCTCCCGCCAACTCTCA+GGG | + | chr8_1:18709238-18709257 | None:intergenic | 65.0% | |
| CACCCCTCCCGCCAACTCTC+AGG | + | chr8_1:18709239-18709258 | None:intergenic | 70.0% | |
| CTGAGAGTTGGCGGGAGGGG+TGG | - | chr8_1:18709237-18709256 | Msa1183460:intron | 70.0% | |
| GGCGGGAGGGGTGGTAGCCT+AGG | - | chr8_1:18709246-18709265 | Msa1183460:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 18707296 | 18711366 | 18707296 | ID=Msa1183460;Name=Msa1183460 |
| chr8_1 | mRNA | 18707296 | 18711366 | 18707296 | ID=Msa1183460-mRNA-1;Parent=Msa1183460;Name=Msa1183460-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.6|0.5|1|0.8|0.83|6|303|571 |
| chr8_1 | exon | 18707296 | 18707790 | 18707296 | ID=Msa1183460-mRNA-1:exon:7226;Parent=Msa1183460-mRNA-1 |
| chr8_1 | exon | 18708285 | 18708345 | 18708285 | ID=Msa1183460-mRNA-1:exon:7225;Parent=Msa1183460-mRNA-1 |
| chr8_1 | exon | 18708432 | 18708676 | 18708432 | ID=Msa1183460-mRNA-1:exon:7224;Parent=Msa1183460-mRNA-1 |
| chr8_1 | exon | 18708808 | 18708966 | 18708808 | ID=Msa1183460-mRNA-1:exon:7223;Parent=Msa1183460-mRNA-1 |
| chr8_1 | exon | 18709539 | 18710431 | 18709539 | ID=Msa1183460-mRNA-1:exon:7222;Parent=Msa1183460-mRNA-1 |
| chr8_1 | exon | 18711201 | 18711366 | 18711201 | ID=Msa1183460-mRNA-1:exon:7221;Parent=Msa1183460-mRNA-1 |
| chr8_1 | CDS | 18711201 | 18711366 | 18711201 | ID=Msa1183460-mRNA-1:cds;Parent=Msa1183460-mRNA-1 |
| chr8_1 | CDS | 18709539 | 18710431 | 18709539 | ID=Msa1183460-mRNA-1:cds;Parent=Msa1183460-mRNA-1 |
| chr8_1 | CDS | 18708808 | 18708966 | 18708808 | ID=Msa1183460-mRNA-1:cds;Parent=Msa1183460-mRNA-1 |
| chr8_1 | CDS | 18708432 | 18708676 | 18708432 | ID=Msa1183460-mRNA-1:cds;Parent=Msa1183460-mRNA-1 |
| chr8_1 | CDS | 18708285 | 18708345 | 18708285 | ID=Msa1183460-mRNA-1:cds;Parent=Msa1183460-mRNA-1 |
| chr8_1 | CDS | 18707599 | 18707790 | 18707599 | ID=Msa1183460-mRNA-1:cds;Parent=Msa1183460-mRNA-1 |
| chr8_1 | three_prime_UTR | 18707296 | 18707598 | 18707296 | ID=Msa1183460-mRNA-1:three_prime_utr;Parent=Msa1183460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
