Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309540 | XP_003615304.4 | 94.281 | 577 | 33 | 0 | 1 | 577 | 1 | 577 | 0.0 | 1137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309540 | sp|Q67XZ3|INV3_ARATH | 56.432 | 583 | 228 | 10 | 1 | 574 | 9 | 574 | 0.0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309540 | G7KBM7 | 94.281 | 577 | 33 | 0 | 1 | 577 | 1 | 577 | 0.0 | 1137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0205400 | Msa1309540 | 0.809766 | 1.608908e-50 | -8.615850e-47 |
| Msa1229300 | Msa1309540 | 0.860027 | 2.749860e-63 | -8.615850e-47 |
| Msa1305740 | Msa1309540 | 0.803267 | 3.781477e-49 | -8.615850e-47 |
| Msa0248600 | Msa1309540 | 0.814590 | 1.425842e-51 | -8.615850e-47 |
| Msa1183460 | Msa1309540 | 0.853936 | 1.718441e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309540 | MtrunA17_Chr8g0342491 | 62.607 | 583 | 198 | 10 | 1 | 574 | 4 | 575 | 0.0 | 743 |
| Msa1309540 | MtrunA17_Chr2g0330151 | 62.478 | 581 | 193 | 11 | 6 | 574 | 8 | 575 | 0.0 | 731 |
| Msa1309540 | MtrunA17_Chr5g0427521 | 93.239 | 355 | 24 | 0 | 53 | 407 | 11 | 365 | 0.0 | 696 |
| Msa1309540 | MtrunA17_Chr1g0178391 | 50.785 | 573 | 258 | 13 | 12 | 574 | 10 | 568 | 0.0 | 595 |
| Msa1309540 | MtrunA17_Chr1g0151241 | 53.604 | 541 | 236 | 8 | 36 | 573 | 43 | 571 | 0.0 | 595 |
| Msa1309540 | MtrunA17_Chr7g0266641 | 49.481 | 578 | 268 | 12 | 6 | 573 | 10 | 573 | 0.0 | 578 |
| Msa1309540 | MtrunA17_Chr1g0151301 | 51.292 | 542 | 249 | 8 | 33 | 571 | 14 | 543 | 0.0 | 578 |
| Msa1309540 | MtrunA17_Chr1g0151321 | 50.000 | 554 | 256 | 13 | 33 | 578 | 14 | 554 | 0.0 | 552 |
| Msa1309540 | MtrunA17_Chr4g0056501 | 43.773 | 546 | 281 | 12 | 39 | 577 | 112 | 638 | 5.83e-145 | 433 |
| Msa1309540 | MtrunA17_Chr3g0079291 | 40.768 | 547 | 285 | 15 | 39 | 573 | 104 | 623 | 3.98e-132 | 399 |
| Msa1309540 | MtrunA17_Chr5g0427511 | 95.402 | 174 | 8 | 0 | 404 | 577 | 20 | 193 | 4.10e-117 | 345 |
| Msa1309540 | MtrunA17_Chr1g0151281 | 50.246 | 203 | 95 | 4 | 63 | 265 | 74 | 270 | 1.10e-66 | 218 |
| Msa1309540 | MtrunA17_Chr1g0151271 | 49.758 | 207 | 102 | 2 | 366 | 572 | 1 | 205 | 5.91e-62 | 203 |
| Msa1309540 | MtrunA17_Chr5g0427531 | 92.453 | 53 | 4 | 0 | 1 | 53 | 1 | 53 | 1.65e-27 | 105 |
| Msa1309540 | MtrunA17_Chr1g0151251 | 37.931 | 87 | 49 | 2 | 264 | 350 | 25 | 106 | 7.40e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309540 | AT1G55120.1 | 56.432 | 583 | 228 | 10 | 1 | 574 | 9 | 574 | 0.0 | 666 |
| Msa1309540 | AT3G13790.2 | 56.667 | 570 | 223 | 11 | 18 | 574 | 23 | 581 | 0.0 | 654 |
| Msa1309540 | AT3G13790.1 | 56.370 | 573 | 223 | 12 | 18 | 574 | 23 | 584 | 0.0 | 649 |
| Msa1309540 | AT1G55120.4 | 58.034 | 529 | 207 | 7 | 52 | 574 | 15 | 534 | 0.0 | 640 |
| Msa1309540 | AT1G55120.3 | 57.011 | 542 | 217 | 8 | 39 | 574 | 28 | 559 | 0.0 | 639 |
| Msa1309540 | AT1G55120.2 | 57.955 | 528 | 207 | 7 | 53 | 574 | 17 | 535 | 0.0 | 638 |
| Msa1309540 | AT3G13784.1 | 55.720 | 542 | 223 | 9 | 35 | 571 | 39 | 568 | 0.0 | 634 |
| Msa1309540 | AT3G13784.4 | 55.413 | 545 | 223 | 10 | 35 | 571 | 39 | 571 | 0.0 | 629 |
| Msa1309540 | AT3G13784.2 | 55.413 | 545 | 223 | 10 | 35 | 571 | 39 | 571 | 0.0 | 629 |
| Msa1309540 | AT3G13790.5 | 57.714 | 525 | 206 | 10 | 55 | 574 | 1 | 514 | 0.0 | 615 |
| Msa1309540 | AT3G13790.4 | 57.714 | 525 | 206 | 10 | 55 | 574 | 1 | 514 | 0.0 | 615 |
| Msa1309540 | AT3G13790.3 | 57.714 | 525 | 206 | 10 | 55 | 574 | 1 | 514 | 0.0 | 615 |
| Msa1309540 | AT3G13784.3 | 55.429 | 525 | 217 | 9 | 52 | 571 | 6 | 518 | 0.0 | 607 |
| Msa1309540 | AT2G36190.1 | 50.436 | 573 | 252 | 12 | 17 | 570 | 23 | 582 | 0.0 | 556 |
| Msa1309540 | AT3G52600.1 | 49.486 | 584 | 256 | 15 | 12 | 570 | 12 | 581 | 0.0 | 552 |
| Msa1309540 | AT3G52600.3 | 52.068 | 532 | 228 | 11 | 52 | 570 | 10 | 527 | 0.0 | 537 |
| Msa1309540 | AT3G52600.2 | 51.985 | 529 | 227 | 11 | 55 | 570 | 1 | 515 | 0.0 | 532 |
| Msa1309540 | AT5G11920.1 | 46.512 | 559 | 277 | 11 | 22 | 574 | 3 | 545 | 1.03e-178 | 516 |
| Msa1309540 | AT5G11920.3 | 46.845 | 523 | 262 | 9 | 55 | 574 | 1 | 510 | 2.02e-170 | 494 |
| Msa1309540 | AT1G62660.1 | 42.279 | 544 | 292 | 13 | 39 | 574 | 106 | 635 | 7.84e-136 | 410 |
| Msa1309540 | AT1G12240.1 | 41.468 | 545 | 296 | 13 | 39 | 574 | 121 | 651 | 3.33e-134 | 406 |
| Msa1309540 | AT1G62660.2 | 41.856 | 528 | 288 | 12 | 52 | 574 | 24 | 537 | 5.74e-130 | 392 |
| Msa1309540 | AT5G11920.2 | 47.132 | 401 | 192 | 10 | 22 | 416 | 3 | 389 | 4.82e-127 | 380 |
| Msa1309540 | AT1G62660.4 | 40.125 | 481 | 271 | 11 | 99 | 574 | 1 | 469 | 1.19e-107 | 332 |
| Msa1309540 | AT1G62660.3 | 40.125 | 481 | 271 | 11 | 99 | 574 | 1 | 469 | 1.19e-107 | 332 |
Find 115 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGTTTATTCCTAAAA+AGG | 0.158213 | 8_4:+6006915 | Msa1309540:CDS |
| ACAATACTTGGCAACATAAT+AGG | 0.169591 | 8_4:-6006541 | None:intergenic |
| ACCATTTGGTTTACTAGTTT+TGG | 0.186131 | 8_4:+6008201 | Msa1309540:CDS |
| ATGTGTCTGACCCATTTCTT+AGG | 0.192701 | 8_4:+6006494 | Msa1309540:CDS |
| TTGCTCCATATAGCACCTTT+TGG | 0.236050 | 8_4:-6006265 | None:intergenic |
| GAAAATGGTGCAAAAGTTAA+AGG | 0.243040 | 8_4:+6008166 | Msa1309540:CDS |
| AATACCATTCATCCAATTCT+TGG | 0.264025 | 8_4:-6005381 | None:intergenic |
| ACTTTGGAGTTAAATTTAAT+AGG | 0.270123 | 8_4:-6007869 | None:intergenic |
| ATATGTTTGGTTCAAATTAA+AGG | 0.279733 | 8_4:-6005333 | None:intergenic |
| GGTTGTGTTGGTAGAAAATA+TGG | 0.281254 | 8_4:-6006243 | None:intergenic |
| AAAAGGATGGTCTGGAATTC+AGG | 0.285122 | 8_4:+6007089 | Msa1309540:CDS |
| AAGAATAATGGTAGAGATAA+TGG | 0.285934 | 8_4:+6009178 | Msa1309540:three_prime_UTR |
| CAACATCTATGTAATGAAAA+TGG | 0.293823 | 8_4:+6008151 | Msa1309540:CDS |
| ATTTCCAACCTTCCAAGAAT+TGG | 0.298015 | 8_4:+6005369 | Msa1309540:CDS |
| AAGAACGATTTGACCACTTA+TGG | 0.301717 | 8_4:+6008420 | Msa1309540:CDS |
| TGGCAACATAATAGGGTTCT+TGG | 0.312775 | 8_4:-6006533 | None:intergenic |
| TCTTCTTGTCTAGCCGTTGA+TGG | 0.314926 | 8_4:+6009224 | Msa1309540:three_prime_UTR |
| CAATACTTGGCAACATAATA+GGG | 0.317867 | 8_4:-6006540 | None:intergenic |
| GGCTGCTCATGGGAACTTCT+TGG | 0.322034 | 8_4:+6005234 | Msa1309540:exon |
| GAAAAGAAGGTTTATATGTT+TGG | 0.323940 | 8_4:-6005346 | None:intergenic |
| CTTTGGAGTTAAATTTAATA+GGG | 0.325405 | 8_4:-6007868 | None:intergenic |
| GAAGATGATGTAGTTGTGTT+AGG | 0.337617 | 8_4:+6009359 | Msa1309540:three_prime_UTR |
| TTTATCCATTCCCTAAGAAA+TGG | 0.341223 | 8_4:-6006505 | None:intergenic |
| GGAGCAACAATAGCATTGTT+TGG | 0.342006 | 8_4:+6006281 | Msa1309540:CDS |
| CATGGGAACTTCTTGGTTGT+TGG | 0.342360 | 8_4:+6005241 | Msa1309540:exon |
| GAGCAACAATAGCATTGTTT+GGG | 0.350928 | 8_4:+6006282 | Msa1309540:CDS |
| GACATCAATGGTTGTTGGTC+AGG | 0.352503 | 8_4:+6006376 | Msa1309540:CDS |
| CAAGAGGATGATGTACAAAA+AGG | 0.352852 | 8_4:+6007072 | Msa1309540:CDS |
| CACCTTCATGCATTCAATAA+TGG | 0.357955 | 8_4:+6009074 | Msa1309540:CDS |
| ACAACCCAAAAGGTGCTATA+TGG | 0.360770 | 8_4:+6006260 | Msa1309540:CDS |
| ATTAGACCCTAGTTGGAAAA+TGG | 0.369888 | 8_4:+6008123 | Msa1309540:CDS |
| AAAGTTAAAGGGGTAGGATT+AGG | 0.375310 | 8_4:+6008178 | Msa1309540:CDS |
| GGGGTAGGATTAGGACCATT+TGG | 0.379464 | 8_4:+6008187 | Msa1309540:CDS |
| AAAATGGTGCAAAAGTTAAA+GGG | 0.383052 | 8_4:+6008167 | Msa1309540:CDS |
| TTTCAAAAGATCTAGTGAAT+TGG | 0.396190 | 8_4:+6006314 | Msa1309540:CDS |
| GGAACATTGCTTGAGATTGT+TGG | 0.401237 | 8_4:+6007902 | Msa1309540:CDS |
| AGGTAGAAGAATGAGTTTGA+TGG | 0.423979 | 8_4:-6005313 | None:intergenic |
| AGCCAACAAAAGGACAATAA+AGG | 0.427636 | 8_4:+6006649 | Msa1309540:CDS |
| TGAAGTGAATGAACTTGAAA+AGG | 0.430323 | 8_4:+6008093 | Msa1309540:CDS |
| AGAGAAGAGTCTTATGGGGT+TGG | 0.430603 | 8_4:+6007031 | Msa1309540:CDS |
| TCATCCAATTCTTGGAAGGT+TGG | 0.432810 | 8_4:-6005373 | None:intergenic |
| TAGTATTAGATATGTGCTTA+AGG | 0.445385 | 8_4:+6006834 | Msa1309540:CDS |
| AGGGGATTCCTAGGACTCTC+TGG | 0.448430 | 8_4:+6007780 | Msa1309540:intron |
| TGTTCCTCTCTTTAACACTT+TGG | 0.450063 | 8_4:-6007885 | None:intergenic |
| TAAATTTGCAGGGGATTCCT+AGG | 0.450136 | 8_4:+6007771 | Msa1309540:intron |
| GGCAACATAATAGGGTTCTT+GGG | 0.451043 | 8_4:-6006532 | None:intergenic |
| AACTCAGTAGTGGAGAGTTT+CGG | 0.451422 | 8_4:+6008987 | Msa1309540:CDS |
| GTGTTGATTAATAGTACAAT+TGG | 0.452565 | 8_4:+6006781 | Msa1309540:CDS |
| GAAGGTTGGAAATGAAAAGA+AGG | 0.457029 | 8_4:-6005359 | None:intergenic |
| CTGACCCATTTCTTAGGGAA+TGG | 0.457311 | 8_4:+6006500 | Msa1309540:CDS |
| TCACATGATTGTTATTTGAT+TGG | 0.457862 | 8_4:+6006874 | Msa1309540:CDS |
| TTATCCATTCCCTAAGAAAT+GGG | 0.457943 | 8_4:-6006504 | None:intergenic |
| CACAAGCATTAGACCCTAGT+TGG | 0.458916 | 8_4:+6008116 | Msa1309540:CDS |
| AGAGACACACGTACCTGCTT+TGG | 0.460979 | 8_4:-6008309 | None:intergenic |
| GGAGTTAAATTTAATAGGGT+TGG | 0.463881 | 8_4:-6007864 | None:intergenic |
| TTATTAATAATCAAGAATAA+TGG | 0.467291 | 8_4:+6009166 | Msa1309540:exon |
| GTGGAGAGTTTCGGAGCAAA+AGG | 0.475980 | 8_4:+6008996 | Msa1309540:CDS |
| CCTTCCAAGAATTGGATGAA+TGG | 0.478873 | 8_4:+6005377 | Msa1309540:CDS |
| GGGGTAAGAGCATGTTGTAA+TGG | 0.480692 | 8_4:-6006340 | None:intergenic |
| TGACCAATCCAAGCAGTTGT+AGG | 0.481362 | 8_4:-6006595 | None:intergenic |
| CAATTTCAACTATAGGCCAC+TGG | 0.483146 | 8_4:-6007829 | None:intergenic |
| TTCTACCAACACAACCCAAA+AGG | 0.490202 | 8_4:+6006250 | Msa1309540:CDS |
| TTTCATTACATAGATGTTGA+GGG | 0.491298 | 8_4:-6008147 | None:intergenic |
| ATTGACAACTCCTCATAGAC+AGG | 0.491385 | 8_4:-6008462 | None:intergenic |
| ATTTCTACAAAGGCTGCTCA+TGG | 0.495021 | 8_4:+6005223 | None:intergenic |
| AGATCAAGCAGTTAAGTGCT+TGG | 0.495538 | 8_4:+6009111 | Msa1309540:CDS |
| TTAGAGACCCTACAACTGCT+TGG | 0.495629 | 8_4:+6006587 | Msa1309540:CDS |
| TGTGTCTGACCCATTTCTTA+GGG | 0.505150 | 8_4:+6006495 | Msa1309540:CDS |
| TATAGTCCCTTGTATCTCAT+AGG | 0.508754 | 8_4:-6006220 | None:intergenic |
| GCTTGGATTGGTCATCATGA+TGG | 0.521512 | 8_4:+6006604 | Msa1309540:CDS |
| GCCAAAACTAGTAAACCAAA+TGG | 0.525340 | 8_4:-6008202 | None:intergenic |
| ACTTGTTGGAAGCCAACAAA+AGG | 0.525732 | 8_4:+6006639 | Msa1309540:CDS |
| CCATTCATCCAATTCTTGGA+AGG | 0.525937 | 8_4:-6005377 | None:intergenic |
| AAGATGATGTAGTTGTGTTA+GGG | 0.531260 | 8_4:+6009360 | Msa1309540:three_prime_UTR |
| GGATTGTGGAGGGTACTTGT+TGG | 0.531339 | 8_4:+6006625 | Msa1309540:CDS |
| GACCCTACAACTGCTTGGAT+TGG | 0.534224 | 8_4:+6006592 | Msa1309540:CDS |
| ATTCCTGTGTATAAGATGGT+TGG | 0.536262 | 8_4:-6006427 | None:intergenic |
| AACATCATAGAGAATAATGA+AGG | 0.538421 | 8_4:-6005273 | None:intergenic |
| GACCAATCCAAGCAGTTGTA+GGG | 0.540603 | 8_4:-6006594 | None:intergenic |
| AAATAACAATGAATTAACAT+TGG | 0.543522 | 8_4:+6006948 | Msa1309540:CDS |
| ATCCACAAAAGCTCCATAAG+TGG | 0.546725 | 8_4:-6008433 | None:intergenic |
| TTGATGTCATACGGTTGAGA+AGG | 0.547639 | 8_4:-6006361 | None:intergenic |
| CAACAACCATTGATGTCATA+CGG | 0.548861 | 8_4:-6006370 | None:intergenic |
| TGATGTCATACGGTTGAGAA+GGG | 0.549385 | 8_4:-6006360 | None:intergenic |
| TGTTGGAGTAACAGCAGCAC+AGG | 0.555952 | 8_4:+6007919 | Msa1309540:CDS |
| GGTGCAAAAGTTAAAGGGGT+AGG | 0.561022 | 8_4:+6008172 | Msa1309540:CDS |
| TCTCAACCGTATGACATCAA+TGG | 0.567091 | 8_4:+6006364 | Msa1309540:CDS |
| TCATGTGTAGTGACCAAAGC+AGG | 0.567201 | 8_4:+6008296 | Msa1309540:CDS |
| GGAGTTGTCAATAAGAAGCT+TGG | 0.569172 | 8_4:+6008473 | Msa1309540:CDS |
| TAATGAATCTTCAATTCAAG+AGG | 0.569616 | 8_4:+6007056 | Msa1309540:CDS |
| TAGTAACATGTTTCCATCAA+CGG | 0.569627 | 8_4:-6009237 | None:intergenic |
| CGTATGACATCAATGGTTGT+TGG | 0.570931 | 8_4:+6006371 | Msa1309540:CDS |
| AAACCAACCATCTTATACAC+AGG | 0.578300 | 8_4:+6006424 | Msa1309540:CDS |
| ATTAGGTCCTATGAGATACA+AGG | 0.580377 | 8_4:+6006213 | Msa1309540:intron |
| ATTGTACTATTAATCAACAC+TGG | 0.580762 | 8_4:-6006778 | None:intergenic |
| GTCAATTCCTGTGTATAAGA+TGG | 0.584907 | 8_4:-6006431 | None:intergenic |
| TTCCATTATTGAATGCATGA+AGG | 0.585126 | 8_4:-6009076 | None:intergenic |
| AACTCCAAAGTGTTAAAGAG+AGG | 0.590724 | 8_4:+6007881 | Msa1309540:CDS |
| AAATGGTGCAAAAGTTAAAG+GGG | 0.592812 | 8_4:+6008168 | Msa1309540:CDS |
| TGGTAGTTATGACACAATCA+AGG | 0.597463 | 8_4:+6006894 | Msa1309540:CDS |
| TTTCTACAAAGGCTGCTCAT+GGG | 0.600547 | 8_4:+6005224 | None:intergenic |
| TTATCATTGATTGCCAACGT+TGG | 0.604918 | 8_4:-6009047 | None:intergenic |
| GGCAAGAGTTTATCCAACGT+TGG | 0.609306 | 8_4:+6009034 | Msa1309540:CDS |
| ACAGATAGATAACTCAGTAG+TGG | 0.609325 | 8_4:+6008977 | Msa1309540:intron |
| GGATGTGGACCCTGTCTATG+AGG | 0.618347 | 8_4:+6008452 | Msa1309540:CDS |
| CTGGGAAGCAATTGATCCAG+TGG | 0.619077 | 8_4:+6007813 | Msa1309540:CDS |
| AGCAACAATAGCATTGTTTG+GGG | 0.625200 | 8_4:+6006283 | Msa1309540:CDS |
| TTAGGTCCTATGAGATACAA+GGG | 0.659987 | 8_4:+6006214 | Msa1309540:intron |
| TTGGTCATCATGATGGATTG+TGG | 0.668315 | 8_4:+6006611 | Msa1309540:CDS |
| GATGTCATACGGTTGAGAAG+GGG | 0.678736 | 8_4:-6006359 | None:intergenic |
| TTTGTCATTCGAGAGAAATG+TGG | 0.679370 | 8_4:-6006404 | None:intergenic |
| TCATCATGATGGATTGTGGA+GGG | 0.688795 | 8_4:+6006615 | Msa1309540:CDS |
| GCAACAATAGCATTGTTTGG+GGG | 0.690248 | 8_4:+6006284 | Msa1309540:CDS |
| GTCATCATGATGGATTGTGG+AGG | 0.703169 | 8_4:+6006614 | Msa1309540:CDS |
| TTGACAACTCCTCATAGACA+GGG | 0.706349 | 8_4:-6008461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTAAAATAATTAAA+AGG | + | chr8_4:6007514-6007533 | Msa1309540:intron | 0.0% |
| !!! | TCACAATATTTTTAATTATA+TGG | - | chr8_4:6006067-6006086 | None:intergenic | 10.0% |
| !!! | AAAGTAAAGATTTTATTAAT+TGG | + | chr8_4:6006689-6006708 | Msa1309540:CDS | 10.0% |
| !!! | AAGTAAAGATTTTATTAATT+GGG | + | chr8_4:6006690-6006709 | Msa1309540:CDS | 10.0% |
| !!! | CTAAGTAAAAATAATAATTT+TGG | - | chr8_4:6007380-6007399 | None:intergenic | 10.0% |
| !!! | TGTTATTTTTGTTATTTATA+GGG | - | chr8_4:6008795-6008814 | None:intergenic | 10.0% |
| !!! | TTGTTATTTTTGTTATTTAT+AGG | - | chr8_4:6008796-6008815 | None:intergenic | 10.0% |
| !! | TTATTAATAATCAAGAATAA+TGG | + | chr8_4:6009166-6009185 | Msa1309540:exon | 10.0% |
| !!! | AAAATTCACTATATTTTTAA+CGG | - | chr8_4:6009448-6009467 | None:intergenic | 10.0% |
| !! | GAAAAACAAGAAAAAAAAAA+AGG | - | chr8_4:6005521-6005540 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTTGTTTTTCTAA+TGG | + | chr8_4:6005524-6005543 | Msa1309540:intron | 15.0% |
| !!! | TTAATTTTGTTAACAATACT+TGG | - | chr8_4:6006556-6006575 | None:intergenic | 15.0% |
| !! | AAATAACAATGAATTAACAT+TGG | + | chr8_4:6006948-6006967 | Msa1309540:CDS | 15.0% |
| !!! | TTTTATTTTTTGAAAAGGTT+TGG | + | chr8_4:6007163-6007182 | Msa1309540:intron | 15.0% |
| !! | NNNNNNNNNNAATTGTAGTC+AGG | + | chr8_4:6007294-6007313 | Msa1309540:intron | 15.0% |
| !! | NNNNNNNNNAATTGTAGTCA+GGG | + | chr8_4:6007295-6007314 | Msa1309540:intron | 15.0% |
| !!! | AATTTTTCAATTTCAACTAT+AGG | - | chr8_4:6007839-6007858 | None:intergenic | 15.0% |
| !! | AAAAGAAATCAAAAGTTAAT+GGG | - | chr8_4:6008048-6008067 | None:intergenic | 15.0% |
| !! | AAAAAGAAATCAAAAGTTAA+TGG | - | chr8_4:6008049-6008068 | None:intergenic | 15.0% |
| !!! | ATATACAAGAATTTTCTTTA+AGG | + | chr8_4:6008243-6008262 | Msa1309540:CDS | 15.0% |
| !!! | AATTTTCTTTAAGGTATTTA+GGG | + | chr8_4:6008252-6008271 | Msa1309540:CDS | 15.0% |
| !! | TAACAAAAATAACAAAATCA+TGG | + | chr8_4:6008801-6008820 | Msa1309540:intron | 15.0% |
| !!! | ATATGTTTGGTTCAAATTAA+AGG | - | chr8_4:6005336-6005355 | None:intergenic | 20.0% |
| !!! | AGGTTTTTTTTTTTGTTGAA+GGG | - | chr8_4:6005459-6005478 | None:intergenic | 20.0% |
| !!! | TCTTACTTTTTTTTTACTCT+TGG | + | chr8_4:6005560-6005579 | Msa1309540:intron | 20.0% |
| !!! | TTTTACTAATTTCACCAAAA+GGG | + | chr8_4:6005645-6005664 | Msa1309540:intron | 20.0% |
| !!! | CACGCATTTTAAATAAAAAT+AGG | - | chr8_4:6005790-6005809 | None:intergenic | 20.0% |
| !!! | GATTTTCATCATTAGATTAT+TGG | + | chr8_4:6005809-6005828 | Msa1309540:intron | 20.0% |
| !! | TATGTATTCAATTCATGATT+TGG | + | chr8_4:6005972-6005991 | Msa1309540:intron | 20.0% |
| !! | ACATAATCAAGTTTAATACA+AGG | + | chr8_4:6006036-6006055 | Msa1309540:intron | 20.0% |
| !!! | ATTTTTTTGGCTGAATAAAA+AGG | - | chr8_4:6006730-6006749 | None:intergenic | 20.0% |
| !!! | TTTTATTCAGCCAAAAAAAT+TGG | + | chr8_4:6006730-6006749 | Msa1309540:CDS | 20.0% |
| !!! | TTGGTTTTAAGATATGATTA+TGG | + | chr8_4:6006967-6006986 | Msa1309540:CDS | 20.0% |
| !! | NNNNNNNNAATTGTAGTCAG+GGG | + | chr8_4:6007296-6007315 | Msa1309540:intron | 20.0% |
| !! | TTACGATGTTATTACAATTA+GGG | - | chr8_4:6007587-6007606 | None:intergenic | 20.0% |
| !! | ATTACGATGTTATTACAATT+AGG | - | chr8_4:6007588-6007607 | None:intergenic | 20.0% |
| !! | ATAATTGGTTAGATGTTATA+TGG | - | chr8_4:6007720-6007739 | None:intergenic | 20.0% |
| !! | TATAACATCTAACCAATTAT+TGG | + | chr8_4:6007720-6007739 | Msa1309540:intron | 20.0% |
| !!! | CTTTGGAGTTAAATTTAATA+GGG | - | chr8_4:6007871-6007890 | None:intergenic | 20.0% |
| !!! | ACTTTGGAGTTAAATTTAAT+AGG | - | chr8_4:6007872-6007891 | None:intergenic | 20.0% |
| !!! | GAATTTTCTTTAAGGTATTT+AGG | + | chr8_4:6008251-6008270 | Msa1309540:CDS | 20.0% |
| !! | TAACAAAGTTAGAAAATATG+TGG | + | chr8_4:6008570-6008589 | Msa1309540:intron | 20.0% |
| ! | AACATCATAGAGAATAATGA+AGG | - | chr8_4:6005276-6005295 | None:intergenic | 25.0% |
| ! | GAAAAGAAGGTTTATATGTT+TGG | - | chr8_4:6005349-6005368 | None:intergenic | 25.0% |
| !!! | GAGGTTTTTTTTTTTGTTGA+AGG | - | chr8_4:6005460-6005479 | None:intergenic | 25.0% |
| ! | TATGAGTCTAACAACATTAA+AGG | - | chr8_4:6005482-6005501 | None:intergenic | 25.0% |
| ! | AAAAAAGGAATCAAAGAAAG+TGG | - | chr8_4:6005506-6005525 | None:intergenic | 25.0% |
| !! | CTTTTACTAATTTCACCAAA+AGG | + | chr8_4:6005644-6005663 | Msa1309540:intron | 25.0% |
| ! | TTTACTAATTTCACCAAAAG+GGG | + | chr8_4:6005646-6005665 | Msa1309540:intron | 25.0% |
| ! | TAGTGTATATAGCTAATCTA+GGG | - | chr8_4:6006140-6006159 | None:intergenic | 25.0% |
| ! | ATAGTGTATATAGCTAATCT+AGG | - | chr8_4:6006141-6006160 | None:intergenic | 25.0% |
| ! | TTTCAAAAGATCTAGTGAAT+TGG | + | chr8_4:6006314-6006333 | Msa1309540:CDS | 25.0% |
| !!! | GTATAGCTAAATTTTGAGTT+TGG | - | chr8_4:6006468-6006487 | None:intergenic | 25.0% |
| ! | ATTGTACTATTAATCAACAC+TGG | - | chr8_4:6006781-6006800 | None:intergenic | 25.0% |
| !!! | GTGTTGATTAATAGTACAAT+TGG | + | chr8_4:6006781-6006800 | Msa1309540:CDS | 25.0% |
| ! | TAGTATTAGATATGTGCTTA+AGG | + | chr8_4:6006834-6006853 | Msa1309540:CDS | 25.0% |
| !!! | TCACATGATTGTTATTTGAT+TGG | + | chr8_4:6006874-6006893 | Msa1309540:CDS | 25.0% |
| ! | GACATGTTTATTCCTAAAAA+GGG | + | chr8_4:6006916-6006935 | Msa1309540:CDS | 25.0% |
| !! | AAAAAAGAGAAGAGTCTTAT+GGG | + | chr8_4:6007026-6007045 | Msa1309540:CDS | 25.0% |
| ! | TAATGAATCTTCAATTCAAG+AGG | + | chr8_4:6007056-6007075 | Msa1309540:CDS | 25.0% |
| !!! | AAGGACGTTATTTTATTGTT+TGG | + | chr8_4:6007533-6007552 | Msa1309540:intron | 25.0% |
| ! | TATAATTAAAACATATGCCC+AGG | + | chr8_4:6007679-6007698 | Msa1309540:intron | 25.0% |
| ! | CAATAACTGAAACCAATAAT+TGG | - | chr8_4:6007735-6007754 | None:intergenic | 25.0% |
| !!! | AACTTTTGATTTCTTTTTGC+AGG | + | chr8_4:6008051-6008070 | Msa1309540:intron | 25.0% |
| ! | TTTCATTACATAGATGTTGA+GGG | - | chr8_4:6008150-6008169 | None:intergenic | 25.0% |
| !! | TTTTCATTACATAGATGTTG+AGG | - | chr8_4:6008151-6008170 | None:intergenic | 25.0% |
| ! | CAACATCTATGTAATGAAAA+TGG | + | chr8_4:6008151-6008170 | Msa1309540:CDS | 25.0% |
| ! | AAAATGGTGCAAAAGTTAAA+GGG | + | chr8_4:6008167-6008186 | Msa1309540:CDS | 25.0% |
| !! | AATTTGATGGATAATGAAAG+AGG | - | chr8_4:6008335-6008354 | None:intergenic | 25.0% |
| ! | TTAAAATTGACACTTTGGTT+TGG | - | chr8_4:6008362-6008381 | None:intergenic | 25.0% |
| ! | AAATCATGGAAACTAAGAAA+TGG | + | chr8_4:6008815-6008834 | Msa1309540:intron | 25.0% |
| ! | ATCATTCTATAACATGATGT+GGG | + | chr8_4:6008887-6008906 | Msa1309540:intron | 25.0% |
| ! | AAGAATAATGGTAGAGATAA+TGG | + | chr8_4:6009178-6009197 | Msa1309540:three_prime_UTR | 25.0% |
| !! | GTCAATGTTAATCCTTTTAT+TGG | + | chr8_4:6009291-6009310 | Msa1309540:three_prime_UTR | 25.0% |
| !! | TGTTTTCAAATGCCAATAAA+AGG | - | chr8_4:6009306-6009325 | None:intergenic | 25.0% |
| AATACCATTCATCCAATTCT+TGG | - | chr8_4:6005384-6005403 | None:intergenic | 30.0% | |
| TTTGTTGAAGGGAACATTAA+AGG | - | chr8_4:6005448-6005467 | None:intergenic | 30.0% | |
| AAGAGTAGAACTAACCATTA+GGG | - | chr8_4:6005613-6005632 | None:intergenic | 30.0% | |
| ! | CAAATTCATTTAACCCCTTT+TGG | - | chr8_4:6005662-6005681 | None:intergenic | 30.0% |
| !!! | AATTTTGAGTTTGGTGTTGA+TGG | - | chr8_4:6006459-6006478 | None:intergenic | 30.0% |
| TTATCCATTCCCTAAGAAAT+GGG | - | chr8_4:6006507-6006526 | None:intergenic | 30.0% | |
| TTTATCCATTCCCTAAGAAA+TGG | - | chr8_4:6006508-6006527 | None:intergenic | 30.0% | |
| CAATACTTGGCAACATAATA+GGG | - | chr8_4:6006543-6006562 | None:intergenic | 30.0% | |
| ACAATACTTGGCAACATAAT+AGG | - | chr8_4:6006544-6006563 | None:intergenic | 30.0% | |
| ! | TTCCTTTATTGTCCTTTTGT+TGG | - | chr8_4:6006654-6006673 | None:intergenic | 30.0% |
| AGCCAAAAAAATTGGAATGT+TGG | + | chr8_4:6006738-6006757 | Msa1309540:CDS | 30.0% | |
| !!! | CTCCAACATTCCAATTTTTT+TGG | - | chr8_4:6006743-6006762 | None:intergenic | 30.0% |
| ATCAACACTGGAAAAAAATC+AGG | - | chr8_4:6006769-6006788 | None:intergenic | 30.0% | |
| GGACATGTTTATTCCTAAAA+AGG | + | chr8_4:6006915-6006934 | Msa1309540:CDS | 30.0% | |
| ! | TTTTGCTGAAATCCCTTTTT+AGG | - | chr8_4:6006931-6006950 | None:intergenic | 30.0% |
| CAAAAAAGAGAAGAGTCTTA+TGG | + | chr8_4:6007025-6007044 | Msa1309540:CDS | 30.0% | |
| ! | AAAAAGAGAAGAGTCTTATG+GGG | + | chr8_4:6007027-6007046 | Msa1309540:CDS | 30.0% |
| CCTAGGATACCATTAATTTA+GGG | + | chr8_4:6007350-6007369 | Msa1309540:intron | 30.0% | |
| CTAGGATACCATTAATTTAG+GGG | + | chr8_4:6007351-6007370 | Msa1309540:intron | 30.0% | |
| !!! | CCTAAGATTTTTGGTGTTTT+GGG | - | chr8_4:6007559-6007578 | None:intergenic | 30.0% |
| !!! | TCCTAAGATTTTTGGTGTTT+TGG | - | chr8_4:6007560-6007579 | None:intergenic | 30.0% |
| GATGTTATTACAATTAGGGT+CGG | - | chr8_4:6007583-6007602 | None:intergenic | 30.0% | |
| ACTCGTATACATAAATTTGC+AGG | + | chr8_4:6007760-6007779 | Msa1309540:intron | 30.0% | |
| CTCGTATACATAAATTTGCA+GGG | + | chr8_4:6007761-6007780 | Msa1309540:intron | 30.0% | |
| TCGTATACATAAATTTGCAG+GGG | + | chr8_4:6007762-6007781 | Msa1309540:intron | 30.0% | |
| GGAGTTAAATTTAATAGGGT+TGG | - | chr8_4:6007867-6007886 | None:intergenic | 30.0% | |
| TGAAGTGAATGAACTTGAAA+AGG | + | chr8_4:6008093-6008112 | Msa1309540:CDS | 30.0% | |
| GAAAATGGTGCAAAAGTTAA+AGG | + | chr8_4:6008166-6008185 | Msa1309540:CDS | 30.0% | |
| AAATGGTGCAAAAGTTAAAG+GGG | + | chr8_4:6008168-6008187 | Msa1309540:CDS | 30.0% | |
| !! | ACCATTTGGTTTACTAGTTT+TGG | + | chr8_4:6008201-6008220 | Msa1309540:CDS | 30.0% |
| !!! | TTTACTAGTTTTGGCTTCAA+AGG | + | chr8_4:6008210-6008229 | Msa1309540:CDS | 30.0% |
| !! | TTGGTTTGGTAAGAATTTGA+TGG | - | chr8_4:6008348-6008367 | None:intergenic | 30.0% |
| GTTGCTTAAAATTGACACTT+TGG | - | chr8_4:6008367-6008386 | None:intergenic | 30.0% | |
| ATAAGATGAACTTGCAAAAG+TGG | + | chr8_4:6008522-6008541 | Msa1309540:intron | 30.0% | |
| TCTAACTTTGTTAATACCTC+AGG | - | chr8_4:6008563-6008582 | None:intergenic | 30.0% | |
| CAAAGTTAGAAAATATGTGG+TGG | + | chr8_4:6008573-6008592 | Msa1309540:intron | 30.0% | |
| GTGGTTGGATTAAAAATATG+TGG | + | chr8_4:6008592-6008611 | Msa1309540:intron | 30.0% | |
| GATTAAAAATATGTGGTCGT+TGG | + | chr8_4:6008599-6008618 | Msa1309540:intron | 30.0% | |
| GATCATTCTATAACATGATG+TGG | + | chr8_4:6008886-6008905 | Msa1309540:intron | 30.0% | |
| ATCTATCTGTGAGAAATAGA+GGG | - | chr8_4:6008967-6008986 | None:intergenic | 30.0% | |
| TATCTATCTGTGAGAAATAG+AGG | - | chr8_4:6008968-6008987 | None:intergenic | 30.0% | |
| AAAAGGAAAAACATGCATCA+CGG | + | chr8_4:6009013-6009032 | Msa1309540:CDS | 30.0% | |
| TTCCATTATTGAATGCATGA+AGG | - | chr8_4:6009079-6009098 | None:intergenic | 30.0% | |
| TAGTAACATGTTTCCATCAA+CGG | - | chr8_4:6009240-6009259 | None:intergenic | 30.0% | |
| AAGATGATGTAGTTGTGTTA+GGG | + | chr8_4:6009360-6009379 | Msa1309540:three_prime_UTR | 30.0% | |
| AGGTAGAAGAATGAGTTTGA+TGG | - | chr8_4:6005316-6005335 | None:intergenic | 35.0% | |
| GAAGGTTGGAAATGAAAAGA+AGG | - | chr8_4:6005362-6005381 | None:intergenic | 35.0% | |
| ATTTCCAACCTTCCAAGAAT+TGG | + | chr8_4:6005369-6005388 | Msa1309540:CDS | 35.0% | |
| GAGTCTAACAACATTAAAGG+AGG | - | chr8_4:6005479-6005498 | None:intergenic | 35.0% | |
| ! | TTTTTACTCTTGGCGTGATA+TGG | + | chr8_4:6005570-6005589 | Msa1309540:intron | 35.0% |
| CAAGAGTAGAACTAACCATT+AGG | - | chr8_4:6005614-6005633 | None:intergenic | 35.0% | |
| TTATGTAAGTGCAACCTAGT+TGG | + | chr8_4:6005718-6005737 | Msa1309540:intron | 35.0% | |
| AATACCCTAATCTACCAACT+AGG | - | chr8_4:6005735-6005754 | None:intergenic | 35.0% | |
| ! | TGGTAGATTAGGGTATTTGA+TGG | + | chr8_4:6005738-6005757 | Msa1309540:intron | 35.0% |
| ATTAGGTCCTATGAGATACA+AGG | + | chr8_4:6006213-6006232 | Msa1309540:intron | 35.0% | |
| TTAGGTCCTATGAGATACAA+GGG | + | chr8_4:6006214-6006233 | Msa1309540:intron | 35.0% | |
| TATAGTCCCTTGTATCTCAT+AGG | - | chr8_4:6006223-6006242 | None:intergenic | 35.0% | |
| ! | GGTTGTGTTGGTAGAAAATA+TGG | - | chr8_4:6006246-6006265 | None:intergenic | 35.0% |
| GAGCAACAATAGCATTGTTT+GGG | + | chr8_4:6006282-6006301 | Msa1309540:CDS | 35.0% | |
| AGCAACAATAGCATTGTTTG+GGG | + | chr8_4:6006283-6006302 | Msa1309540:CDS | 35.0% | |
| CAACAACCATTGATGTCATA+CGG | - | chr8_4:6006373-6006392 | None:intergenic | 35.0% | |
| TTTGTCATTCGAGAGAAATG+TGG | - | chr8_4:6006407-6006426 | None:intergenic | 35.0% | |
| AAACCAACCATCTTATACAC+AGG | + | chr8_4:6006424-6006443 | Msa1309540:CDS | 35.0% | |
| ATTCCTGTGTATAAGATGGT+TGG | - | chr8_4:6006430-6006449 | None:intergenic | 35.0% | |
| GTCAATTCCTGTGTATAAGA+TGG | - | chr8_4:6006434-6006453 | None:intergenic | 35.0% | |
| ! | AATGGGTCAGACACATTTTT+GGG | - | chr8_4:6006490-6006509 | None:intergenic | 35.0% |
| ! | AAATGGGTCAGACACATTTT+TGG | - | chr8_4:6006491-6006510 | None:intergenic | 35.0% |
| AGCCAACAAAAGGACAATAA+AGG | + | chr8_4:6006649-6006668 | Msa1309540:CDS | 35.0% | |
| TGGTAGTTATGACACAATCA+AGG | + | chr8_4:6006894-6006913 | Msa1309540:CDS | 35.0% | |
| CAAGAGGATGATGTACAAAA+AGG | + | chr8_4:6007072-6007091 | Msa1309540:CDS | 35.0% | |
| AGGATGATGTACAAAAAGGA+TGG | + | chr8_4:6007076-6007095 | Msa1309540:CDS | 35.0% | |
| GCCTAGGATACCATTAATTT+AGG | + | chr8_4:6007349-6007368 | Msa1309540:intron | 35.0% | |
| CCCTAAATTAATGGTATCCT+AGG | - | chr8_4:6007353-6007372 | None:intergenic | 35.0% | |
| TTTGGTTGCCCCTAAATTAA+TGG | - | chr8_4:6007362-6007381 | None:intergenic | 35.0% | |
| CCCAAAACACCAAAAATCTT+AGG | + | chr8_4:6007556-6007575 | Msa1309540:intron | 35.0% | |
| ! | AACTCCAAAGTGTTAAAGAG+AGG | + | chr8_4:6007881-6007900 | Msa1309540:CDS | 35.0% |
| TGTTCCTCTCTTTAACACTT+TGG | - | chr8_4:6007888-6007907 | None:intergenic | 35.0% | |
| GCAAAACAAAAATCACACAC+TGG | - | chr8_4:6007951-6007970 | None:intergenic | 35.0% | |
| ATTAGACCCTAGTTGGAAAA+TGG | + | chr8_4:6008123-6008142 | Msa1309540:CDS | 35.0% | |
| AAAGTTAAAGGGGTAGGATT+AGG | + | chr8_4:6008178-6008197 | Msa1309540:CDS | 35.0% | |
| GCCAAAACTAGTAAACCAAA+TGG | - | chr8_4:6008205-6008224 | None:intergenic | 35.0% | |
| GCAACTTATGTATCATCACT+AGG | + | chr8_4:6008382-6008401 | Msa1309540:intron | 35.0% | |
| AAGAACGATTTGACCACTTA+TGG | + | chr8_4:6008420-6008439 | Msa1309540:CDS | 35.0% | |
| GTATATGCTATTACAACCTG+AGG | + | chr8_4:6008544-6008563 | Msa1309540:intron | 35.0% | |
| GTTAGAAAATATGTGGTGGT+TGG | + | chr8_4:6008577-6008596 | Msa1309540:intron | 35.0% | |
| ACAGATAGATAACTCAGTAG+TGG | + | chr8_4:6008977-6008996 | Msa1309540:intron | 35.0% | |
| ! | TTATCATTGATTGCCAACGT+TGG | - | chr8_4:6009050-6009069 | None:intergenic | 35.0% |
| CACCTTCATGCATTCAATAA+TGG | + | chr8_4:6009074-6009093 | Msa1309540:CDS | 35.0% | |
| GAAGATGATGTAGTTGTGTT+AGG | + | chr8_4:6009359-6009378 | Msa1309540:three_prime_UTR | 35.0% | |
| ! | TGTGTTAGGGCAATTTTGAA+AGG | + | chr8_4:6009373-6009392 | Msa1309540:three_prime_UTR | 35.0% |
| TCATCCAATTCTTGGAAGGT+TGG | - | chr8_4:6005376-6005395 | None:intergenic | 40.0% | |
| CCATTCATCCAATTCTTGGA+AGG | - | chr8_4:6005380-6005399 | None:intergenic | 40.0% | |
| CCTTCCAAGAATTGGATGAA+TGG | + | chr8_4:6005377-6005396 | Msa1309540:CDS | 40.0% | |
| GTTGAAGGGAACATTAAAGG+AGG | - | chr8_4:6005445-6005464 | None:intergenic | 40.0% | |
| !! | TGCAACCTAGTTGGTAGATT+AGG | + | chr8_4:6005727-6005746 | Msa1309540:intron | 40.0% |
| !! | GCAACCTAGTTGGTAGATTA+GGG | + | chr8_4:6005728-6005747 | Msa1309540:intron | 40.0% |
| ! | GCTCTTTTTGCATGTGCATT+AGG | + | chr8_4:6006196-6006215 | Msa1309540:intron | 40.0% |
| TTCTACCAACACAACCCAAA+AGG | + | chr8_4:6006250-6006269 | Msa1309540:CDS | 40.0% | |
| !! | ACAACCCAAAAGGTGCTATA+TGG | + | chr8_4:6006260-6006279 | Msa1309540:CDS | 40.0% |
| ! | TGCTCCATATAGCACCTTTT+GGG | - | chr8_4:6006267-6006286 | None:intergenic | 40.0% |
| ! | TTGCTCCATATAGCACCTTT+TGG | - | chr8_4:6006268-6006287 | None:intergenic | 40.0% |
| GGAGCAACAATAGCATTGTT+TGG | + | chr8_4:6006281-6006300 | Msa1309540:CDS | 40.0% | |
| GCAACAATAGCATTGTTTGG+GGG | + | chr8_4:6006284-6006303 | Msa1309540:CDS | 40.0% | |
| TGATGTCATACGGTTGAGAA+GGG | - | chr8_4:6006363-6006382 | None:intergenic | 40.0% | |
| TTGATGTCATACGGTTGAGA+AGG | - | chr8_4:6006364-6006383 | None:intergenic | 40.0% | |
| TCTCAACCGTATGACATCAA+TGG | + | chr8_4:6006364-6006383 | Msa1309540:CDS | 40.0% | |
| CGTATGACATCAATGGTTGT+TGG | + | chr8_4:6006371-6006390 | Msa1309540:CDS | 40.0% | |
| ATGTGTCTGACCCATTTCTT+AGG | + | chr8_4:6006494-6006513 | Msa1309540:CDS | 40.0% | |
| TGTGTCTGACCCATTTCTTA+GGG | + | chr8_4:6006495-6006514 | Msa1309540:CDS | 40.0% | |
| GGCAACATAATAGGGTTCTT+GGG | - | chr8_4:6006535-6006554 | None:intergenic | 40.0% | |
| TGGCAACATAATAGGGTTCT+TGG | - | chr8_4:6006536-6006555 | None:intergenic | 40.0% | |
| !! | TTGGTCATCATGATGGATTG+TGG | + | chr8_4:6006611-6006630 | Msa1309540:CDS | 40.0% |
| !! | TCATCATGATGGATTGTGGA+GGG | + | chr8_4:6006615-6006634 | Msa1309540:CDS | 40.0% |
| ! | ACTTGTTGGAAGCCAACAAA+AGG | + | chr8_4:6006639-6006658 | Msa1309540:CDS | 40.0% |
| GATGTACAAAAAGGATGGTC+TGG | + | chr8_4:6007081-6007100 | Msa1309540:CDS | 40.0% | |
| ! | AAAAGGATGGTCTGGAATTC+AGG | + | chr8_4:6007089-6007108 | Msa1309540:CDS | 40.0% |
| TAAATTTGCAGGGGATTCCT+AGG | + | chr8_4:6007771-6007790 | Msa1309540:intron | 40.0% | |
| ! | ACTCTCTGGCTTGAAAAATC+TGG | + | chr8_4:6007794-6007813 | Msa1309540:CDS | 40.0% |
| ! | CTCTCTGGCTTGAAAAATCT+GGG | + | chr8_4:6007795-6007814 | Msa1309540:CDS | 40.0% |
| CAATTTCAACTATAGGCCAC+TGG | - | chr8_4:6007832-6007851 | None:intergenic | 40.0% | |
| GGAACATTGCTTGAGATTGT+TGG | + | chr8_4:6007902-6007921 | Msa1309540:CDS | 40.0% | |
| ATCCACAAAAGCTCCATAAG+TGG | - | chr8_4:6008436-6008455 | None:intergenic | 40.0% | |
| ! | TTATGGAGCTTTTGTGGATG+TGG | + | chr8_4:6008437-6008456 | Msa1309540:CDS | 40.0% |
| TTGACAACTCCTCATAGACA+GGG | - | chr8_4:6008464-6008483 | None:intergenic | 40.0% | |
| ATTGACAACTCCTCATAGAC+AGG | - | chr8_4:6008465-6008484 | None:intergenic | 40.0% | |
| GGAGTTGTCAATAAGAAGCT+TGG | + | chr8_4:6008473-6008492 | Msa1309540:CDS | 40.0% | |
| ! | AACTCAGTAGTGGAGAGTTT+CGG | + | chr8_4:6008987-6009006 | Msa1309540:CDS | 40.0% |
| AGATCAAGCAGTTAAGTGCT+TGG | + | chr8_4:6009111-6009130 | Msa1309540:CDS | 40.0% | |
| CATGGGAACTTCTTGGTTGT+TGG | + | chr8_4:6005241-6005260 | Msa1309540:exon | 45.0% | |
| TTACTCTTGGCGTGATATGG+TGG | + | chr8_4:6005573-6005592 | Msa1309540:intron | 45.0% | |
| ATTGGACTTGCAGACCCTAA+TGG | + | chr8_4:6005596-6005615 | Msa1309540:intron | 45.0% | |
| !!! | TAGCACCTTTTGGGTTGTGT+TGG | - | chr8_4:6006258-6006277 | None:intergenic | 45.0% |
| ! | GGGGTAAGAGCATGTTGTAA+TGG | - | chr8_4:6006343-6006362 | None:intergenic | 45.0% |
| GATGTCATACGGTTGAGAAG+GGG | - | chr8_4:6006362-6006381 | None:intergenic | 45.0% | |
| GACATCAATGGTTGTTGGTC+AGG | + | chr8_4:6006376-6006395 | Msa1309540:CDS | 45.0% | |
| CTGACCCATTTCTTAGGGAA+TGG | + | chr8_4:6006500-6006519 | Msa1309540:CDS | 45.0% | |
| TTAGAGACCCTACAACTGCT+TGG | + | chr8_4:6006587-6006606 | Msa1309540:CDS | 45.0% | |
| GACCAATCCAAGCAGTTGTA+GGG | - | chr8_4:6006597-6006616 | None:intergenic | 45.0% | |
| TGACCAATCCAAGCAGTTGT+AGG | - | chr8_4:6006598-6006617 | None:intergenic | 45.0% | |
| !! | GCTTGGATTGGTCATCATGA+TGG | + | chr8_4:6006604-6006623 | Msa1309540:CDS | 45.0% |
| !! | GTCATCATGATGGATTGTGG+AGG | + | chr8_4:6006614-6006633 | Msa1309540:CDS | 45.0% |
| ! | AGAGAAGAGTCTTATGGGGT+TGG | + | chr8_4:6007031-6007050 | Msa1309540:CDS | 45.0% |
| ! | AGGGTCGGTCCTAAGATTTT+TGG | - | chr8_4:6007568-6007587 | None:intergenic | 45.0% |
| AAACATATGCCCAGGACTCT+TGG | + | chr8_4:6007687-6007706 | Msa1309540:intron | 45.0% | |
| !! | TTTTCAAGCCAGAGAGTCCT+AGG | - | chr8_4:6007791-6007810 | None:intergenic | 45.0% |
| CACAAGCATTAGACCCTAGT+TGG | + | chr8_4:6008116-6008135 | Msa1309540:CDS | 45.0% | |
| ! | GAGGGTCCATTTTCCAACTA+GGG | - | chr8_4:6008132-6008151 | None:intergenic | 45.0% |
| ! | TGAGGGTCCATTTTCCAACT+AGG | - | chr8_4:6008133-6008152 | None:intergenic | 45.0% |
| GGTGCAAAAGTTAAAGGGGT+AGG | + | chr8_4:6008172-6008191 | Msa1309540:CDS | 45.0% | |
| TCATGTGTAGTGACCAAAGC+AGG | + | chr8_4:6008296-6008315 | Msa1309540:CDS | 45.0% | |
| ! | GACCACTTATGGAGCTTTTG+TGG | + | chr8_4:6008431-6008450 | Msa1309540:CDS | 45.0% |
| TTCATGCCTCATCACATCAG+TGG | - | chr8_4:6008728-6008747 | None:intergenic | 45.0% | |
| TTGCCAACGATAATCGATCC+TGG | + | chr8_4:6008757-6008776 | Msa1309540:intron | 45.0% | |
| GAACCAGGATCGATTATCGT+TGG | - | chr8_4:6008763-6008782 | None:intergenic | 45.0% | |
| ATAGGGACGAGAATAGAACC+AGG | - | chr8_4:6008778-6008797 | None:intergenic | 45.0% | |
| GGCAAGAGTTTATCCAACGT+TGG | + | chr8_4:6009034-6009053 | Msa1309540:CDS | 45.0% | |
| TCTTCTTGTCTAGCCGTTGA+TGG | + | chr8_4:6009224-6009243 | Msa1309540:three_prime_UTR | 45.0% | |
| !!! | TTATTTTTTATTTTTTGAAA+AGG | + | chr8_4:6007158-6007177 | Msa1309540:intron | 5.0% |
| !!! | ATATAGATATTTTTTTAATT+CGG | + | chr8_4:6007411-6007430 | Msa1309540:intron | 5.0% |
| !! | AATTAATTAGTTAAAATAAT+TGG | + | chr8_4:6008001-6008020 | Msa1309540:intron | 5.0% |
| !! | CTTGGCGTGATATGGTGGAT+TGG | + | chr8_4:6005578-6005597 | Msa1309540:intron | 50.0% |
| GACCCTACAACTGCTTGGAT+TGG | + | chr8_4:6006592-6006611 | Msa1309540:CDS | 50.0% | |
| !! | GGATTGTGGAGGGTACTTGT+TGG | + | chr8_4:6006625-6006644 | Msa1309540:CDS | 50.0% |
| CTGGGAAGCAATTGATCCAG+TGG | + | chr8_4:6007813-6007832 | Msa1309540:CDS | 50.0% | |
| TGTTGGAGTAACAGCAGCAC+AGG | + | chr8_4:6007919-6007938 | Msa1309540:CDS | 50.0% | |
| GGGGTAGGATTAGGACCATT+TGG | + | chr8_4:6008187-6008206 | Msa1309540:CDS | 50.0% | |
| AGAGACACACGTACCTGCTT+TGG | - | chr8_4:6008312-6008331 | None:intergenic | 50.0% | |
| TGCCTCATCACATCAGTGGT+CGG | - | chr8_4:6008724-6008743 | None:intergenic | 50.0% | |
| GTGGAGAGTTTCGGAGCAAA+AGG | + | chr8_4:6008996-6009015 | Msa1309540:CDS | 50.0% | |
| GGCTGCTCATGGGAACTTCT+TGG | + | chr8_4:6005234-6005253 | Msa1309540:exon | 55.0% | |
| GGACTCAAGCCAAGAGTCCT+GGG | - | chr8_4:6007699-6007718 | None:intergenic | 55.0% | |
| TGGACTCAAGCCAAGAGTCC+TGG | - | chr8_4:6007700-6007719 | None:intergenic | 55.0% | |
| AGGGGATTCCTAGGACTCTC+TGG | + | chr8_4:6007780-6007799 | Msa1309540:intron | 55.0% | |
| GGATGTGGACCCTGTCTATG+AGG | + | chr8_4:6008452-6008471 | Msa1309540:CDS | 55.0% | |
| TCACATCAGTGGTCGGACGT+TGG | - | chr8_4:6008717-6008736 | None:intergenic | 55.0% | |
| GTCCGACCACTGATGTGATG+AGG | + | chr8_4:6008719-6008738 | Msa1309540:intron | 55.0% | |
| TCAGGGGTGACCCTGAGAGT+TGG | + | chr8_4:6007312-6007331 | Msa1309540:intron | 60.0% | |
| GGGGTGACCCTGAGAGTTGG+CGG | + | chr8_4:6007315-6007334 | Msa1309540:intron | 65.0% | |
| GGGTGACCCTGAGAGTTGGC+GGG | + | chr8_4:6007316-6007335 | Msa1309540:intron | 65.0% | |
| TGACCCTGAGAGTTGGCGGG+AGG | + | chr8_4:6007319-6007338 | Msa1309540:intron | 65.0% | |
| GACCCTGAGAGTTGGCGGGA+GGG | + | chr8_4:6007320-6007339 | Msa1309540:intron | 65.0% | |
| ACCCTGAGAGTTGGCGGGAG+GGG | + | chr8_4:6007321-6007340 | Msa1309540:intron | 65.0% | |
| ACCCCTCCCGCCAACTCTCA+GGG | - | chr8_4:6007325-6007344 | None:intergenic | 65.0% | |
| CACCCCTCCCGCCAACTCTC+AGG | - | chr8_4:6007326-6007345 | None:intergenic | 70.0% | |
| CTGAGAGTTGGCGGGAGGGG+TGG | + | chr8_4:6007324-6007343 | Msa1309540:intron | 70.0% | |
| GGCGGGAGGGGTGGTAGCCT+AGG | + | chr8_4:6007333-6007352 | Msa1309540:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 6005231 | 6009475 | 6005231 | ID=Msa1309540;Name=Msa1309540 |
| chr8_4 | mRNA | 6005231 | 6009475 | 6005231 | ID=Msa1309540-mRNA-1;Parent=Msa1309540;Name=Msa1309540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=11|0.8|0.83|1|1|0.83|6|303|578 |
| chr8_4 | exon | 6005231 | 6005398 | 6005231 | ID=Msa1309540-mRNA-1:exon:2036;Parent=Msa1309540-mRNA-1 |
| chr8_4 | exon | 6006218 | 6007110 | 6006218 | ID=Msa1309540-mRNA-1:exon:2037;Parent=Msa1309540-mRNA-1 |
| chr8_4 | exon | 6007782 | 6007940 | 6007782 | ID=Msa1309540-mRNA-1:exon:2038;Parent=Msa1309540-mRNA-1 |
| chr8_4 | exon | 6008073 | 6008317 | 6008073 | ID=Msa1309540-mRNA-1:exon:2039;Parent=Msa1309540-mRNA-1 |
| chr8_4 | exon | 6008404 | 6008494 | 6008404 | ID=Msa1309540-mRNA-1:exon:2040;Parent=Msa1309540-mRNA-1 |
| chr8_4 | exon | 6008981 | 6009475 | 6008981 | ID=Msa1309540-mRNA-1:exon:2041;Parent=Msa1309540-mRNA-1 |
| chr8_4 | five_prime_UTR | 6005231 | 6005241 | 6005231 | ID=Msa1309540-mRNA-1:five_prime_utr;Parent=Msa1309540-mRNA-1 |
| chr8_4 | CDS | 6005242 | 6005398 | 6005242 | ID=Msa1309540-mRNA-1:cds;Parent=Msa1309540-mRNA-1 |
| chr8_4 | CDS | 6006218 | 6007110 | 6006218 | ID=Msa1309540-mRNA-1:cds;Parent=Msa1309540-mRNA-1 |
| chr8_4 | CDS | 6007782 | 6007940 | 6007782 | ID=Msa1309540-mRNA-1:cds;Parent=Msa1309540-mRNA-1 |
| chr8_4 | CDS | 6008073 | 6008317 | 6008073 | ID=Msa1309540-mRNA-1:cds;Parent=Msa1309540-mRNA-1 |
| chr8_4 | CDS | 6008404 | 6008494 | 6008404 | ID=Msa1309540-mRNA-1:cds;Parent=Msa1309540-mRNA-1 |
| chr8_4 | CDS | 6008981 | 6009172 | 6008981 | ID=Msa1309540-mRNA-1:cds;Parent=Msa1309540-mRNA-1 |
| chr8_4 | three_prime_UTR | 6009173 | 6009475 | 6009173 | ID=Msa1309540-mRNA-1:three_prime_utr;Parent=Msa1309540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
