Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183570 | KEH17929.1 | 59.200 | 125 | 33 | 1 | 70 | 194 | 21 | 127 | 5.75e-34 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183570 | A0A072TK90 | 59.200 | 125 | 33 | 1 | 70 | 194 | 21 | 127 | 2.75e-34 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1127140 | Msa1183570 | 0.802560 | 5.293600e-49 | -8.615850e-47 |
| Msa1166400 | Msa1183570 | 0.800396 | 1.470139e-48 | -8.615850e-47 |
| Msa1183570 | Msa1420060 | 0.812671 | 3.769354e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183570 | MtrunA17_Chr1g0201211 | 34.583 | 240 | 95 | 4 | 16 | 193 | 28 | 267 | 1.44e-29 | 110 |
| Msa1183570 | MtrunA17_Chr1g0179031 | 48.031 | 127 | 61 | 4 | 70 | 193 | 60 | 184 | 9.31e-23 | 90.9 |
| Msa1183570 | MtrunA17_Chr1g0200761 | 60.377 | 53 | 21 | 0 | 16 | 68 | 28 | 80 | 2.67e-15 | 70.9 |
| Msa1183570 | MtrunA17_Chr1g0200771 | 53.226 | 62 | 29 | 0 | 133 | 194 | 2 | 63 | 1.94e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 20 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGATAACAAATTTATT+TGG | 0.290046 | 8_1:-18848620 | Msa1183570:CDS |
| ATGTCACTGACAGTATATTT+TGG | 0.316255 | 8_1:-18848673 | Msa1183570:CDS |
| TTTGTTTATGTTGAGATAAC+AGG | 0.317818 | 8_1:-18850418 | Msa1183570:CDS |
| CTTGATTACCTAAAACTTGT+TGG | 0.379055 | 8_1:+18848307 | None:intergenic |
| TGTGAAAATGTGGGATGATT+TGG | 0.387201 | 8_1:-18848363 | Msa1183570:CDS |
| ATGTGTTGTGTGTGTGTTGT+TGG | 0.388357 | 8_1:-18848456 | Msa1183570:CDS |
| TTCAACAGATGAAAGCTATA+AGG | 0.389969 | 8_1:-18848340 | Msa1183570:CDS |
| ACGGTTATCACTCATCTCAT+TGG | 0.425962 | 8_1:-18848548 | Msa1183570:CDS |
| ATAGCTTGCACAAGACAAAC+TGG | 0.468907 | 8_1:+18848497 | None:intergenic |
| AGTTTGTCTTGTGCAAGCTA+TGG | 0.470022 | 8_1:-18848495 | Msa1183570:CDS |
| AACTGGTGGGTCTTCTAATA+CGG | 0.498564 | 8_1:+18848514 | None:intergenic |
| ATCTTACAATACCCACCTGT+TGG | 0.537898 | 8_1:-18850301 | Msa1183570:intron |
| TGACTGTTGTTGTGAAAATG+TGG | 0.546370 | 8_1:-18848373 | Msa1183570:CDS |
| TTTGATTTCAACTGTTACTG+CGG | 0.582604 | 8_1:-18848429 | Msa1183570:CDS |
| GACTGTTGTTGTGAAAATGT+GGG | 0.613478 | 8_1:-18848372 | Msa1183570:CDS |
| CTTGCACAAGACAAACTGGT+GGG | 0.674912 | 8_1:+18848501 | None:intergenic |
| GCTTGCACAAGACAAACTGG+TGG | 0.681408 | 8_1:+18848500 | None:intergenic |
| AAATTTATTTGGTGACAACG+TGG | 0.682097 | 8_1:-18848609 | Msa1183570:CDS |
| TATTTCAGTAGACCAACAGG+TGG | 0.687699 | 8_1:+18850289 | None:intergenic |
| ATTTCAGTAGACCAACAGGT+GGG | 0.745675 | 8_1:+18850290 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTAATAAAAATAA+TGG | - | chr8_1:18849186-18849205 | Msa1183570:intron | 0.0% |
| !! | AAAAATATTAATAAAAATAA+TGG | - | chr8_1:18849186-18849205 | Msa1183570:intron | 0.0% |
| !!! | TAATTTAAAAATTGATTTTC+TGG | + | chr8_1:18849715-18849734 | None:intergenic | 10.0% |
| !! | TAAAAAAATGTAATAAATTC+TGG | - | chr8_1:18849001-18849020 | Msa1183570:intron | 10.0% |
| !! | AAAAAAATGAAATAAAATCT+TGG | - | chr8_1:18849078-18849097 | Msa1183570:intron | 10.0% |
| !!! | TTCAAATTTTTTAAAAAATC+TGG | - | chr8_1:18849620-18849639 | Msa1183570:intron | 10.0% |
| !!! | TAATTTAAAAATTGATTTTC+TGG | - | chr8_1:18849715-18849734 | Msa1183570:intron | 10.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | - | chr8_1:18849746-18849765 | Msa1183570:intron | 10.0% |
| !!! | TAATTTAAAAATTGATTTTC+TGG | + | chr8_1:18849715-18849734 | None:intergenic | 10.0% |
| !! | TAAAAAAATGTAATAAATTC+TGG | - | chr8_1:18849001-18849020 | Msa1183570:intron | 10.0% |
| !! | AAAAAAATGAAATAAAATCT+TGG | - | chr8_1:18849078-18849097 | Msa1183570:intron | 10.0% |
| !!! | TTCAAATTTTTTAAAAAATC+TGG | - | chr8_1:18849620-18849639 | Msa1183570:intron | 10.0% |
| !!! | TAATTTAAAAATTGATTTTC+TGG | - | chr8_1:18849715-18849734 | Msa1183570:intron | 10.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | - | chr8_1:18849746-18849765 | Msa1183570:intron | 10.0% |
| !!! | CATTTATCTAATTTAAAATC+TGG | + | chr8_1:18848919-18848938 | None:intergenic | 15.0% |
| !! | AAAAATTTCACAAAAATTCA+CGG | - | chr8_1:18849139-18849158 | Msa1183570:intron | 15.0% |
| !! | ATGGAAAAATATTTAAATTC+TGG | - | chr8_1:18849205-18849224 | Msa1183570:intron | 15.0% |
| !! | AAAAATTTCACAAAAATTCA+TGG | - | chr8_1:18849139-18849158 | Msa1183570:intron | 15.0% |
| !!! | GGAAATTTTTTAAAAAAATC+TGG | + | chr8_1:18849591-18849610 | None:intergenic | 15.0% |
| !!! | AAGTTTTAAAACTACAATTT+TGG | + | chr8_1:18849960-18849979 | None:intergenic | 15.0% |
| !!! | AAATTGTAGTTTTAAAACTT+AGG | - | chr8_1:18849960-18849979 | Msa1183570:intron | 15.0% |
| !!! | AATTGTAGTTTTAAAACTTA+GGG | - | chr8_1:18849961-18849980 | Msa1183570:intron | 15.0% |
| !!! | GAGATTTTTGTTATTTTTTA+CGG | - | chr8_1:18850233-18850252 | Msa1183570:intron | 15.0% |
| !!! | CATTTATCTAATTTAAAATC+TGG | + | chr8_1:18848919-18848938 | None:intergenic | 15.0% |
| !! | AAAAATTTCACAAAAATTCA+CGG | - | chr8_1:18849139-18849158 | Msa1183570:intron | 15.0% |
| !! | ATGGAAAAATATTTAAATTC+TGG | - | chr8_1:18849205-18849224 | Msa1183570:intron | 15.0% |
| !! | AAAAATTTCACAAAAATTCA+TGG | - | chr8_1:18849139-18849158 | Msa1183570:intron | 15.0% |
| !!! | GGAAATTTTTTAAAAAAATC+TGG | + | chr8_1:18849591-18849610 | None:intergenic | 15.0% |
| !!! | AAGTTTTAAAACTACAATTT+TGG | + | chr8_1:18849960-18849979 | None:intergenic | 15.0% |
| !!! | AAATTGTAGTTTTAAAACTT+AGG | - | chr8_1:18849960-18849979 | Msa1183570:intron | 15.0% |
| !!! | AATTGTAGTTTTAAAACTTA+GGG | - | chr8_1:18849961-18849980 | Msa1183570:intron | 15.0% |
| !!! | GAGATTTTTGTTATTTTTTA+CGG | - | chr8_1:18850233-18850252 | Msa1183570:intron | 15.0% |
| !!! | ACAAAATTACTCTACTTTTT+TGG | - | chr8_1:18848347-18848366 | Msa1183570:CDS | 20.0% |
| !!! | TTACTGCTGTAATTTTTTTT+AGG | - | chr8_1:18848596-18848615 | Msa1183570:CDS | 20.0% |
| !!! | AAGTTTGAAAACTACAATTT+TGG | - | chr8_1:18848673-18848692 | Msa1183570:CDS | 20.0% |
| !! | TAATTAATTAATTACACACG+TGG | + | chr8_1:18848774-18848793 | None:intergenic | 20.0% |
| !!! | TTCTGGAAAAATGAAAAATA+AGG | - | chr8_1:18849018-18849037 | Msa1183570:intron | 20.0% |
| !!! | GAAAATTCTGTAAAAGATTT+TGG | - | chr8_1:18849534-18849553 | Msa1183570:intron | 20.0% |
| !!! | TTTTTAATTAATTACACACG+TGG | - | chr8_1:18849859-18849878 | Msa1183570:intron | 20.0% |
| !!! | ATTGTAGTTTTAAAACTTAG+GGG | - | chr8_1:18849962-18849981 | Msa1183570:intron | 20.0% |
| !!! | ACAAAATTACTCTACTTTTT+TGG | - | chr8_1:18848347-18848366 | Msa1183570:CDS | 20.0% |
| !!! | TTACTGCTGTAATTTTTTTT+AGG | - | chr8_1:18848596-18848615 | Msa1183570:CDS | 20.0% |
| !!! | AAGTTTGAAAACTACAATTT+TGG | - | chr8_1:18848673-18848692 | Msa1183570:CDS | 20.0% |
| !! | TAATTAATTAATTACACACG+TGG | + | chr8_1:18848774-18848793 | None:intergenic | 20.0% |
| !!! | TTCTGGAAAAATGAAAAATA+AGG | - | chr8_1:18849018-18849037 | Msa1183570:intron | 20.0% |
| !!! | GAAAATTCTGTAAAAGATTT+TGG | - | chr8_1:18849534-18849553 | Msa1183570:intron | 20.0% |
| !!! | TTTTTAATTAATTACACACG+TGG | - | chr8_1:18849859-18849878 | Msa1183570:intron | 20.0% |
| !!! | ATTGTAGTTTTAAAACTTAG+GGG | - | chr8_1:18849962-18849981 | Msa1183570:intron | 20.0% |
| ! | TTTGTTTATGTTGAGATAAC+AGG | - | chr8_1:18848382-18848401 | Msa1183570:CDS | 25.0% |
| ! | ACTGAAATATGTGATTATCT+TGG | - | chr8_1:18848525-18848544 | Msa1183570:CDS | 25.0% |
| ! | AATAAAACACATATAGCACA+TGG | + | chr8_1:18848556-18848575 | None:intergenic | 25.0% |
| !! | TTGTAGTTTTCAAACTTAGA+GGG | + | chr8_1:18848670-18848689 | None:intergenic | 25.0% |
| !! | ATTGTAGTTTTCAAACTTAG+AGG | + | chr8_1:18848671-18848690 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr8_1:18849171-18849190 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr8_1:18849171-18849190 | None:intergenic | 25.0% |
| ! | TATTCGAAAAAGTAATGTCA+TGG | - | chr8_1:18849385-18849404 | Msa1183570:intron | 25.0% |
| ! | TGGTACATATTTCTTCTTTA+GGG | + | chr8_1:18849424-18849443 | None:intergenic | 25.0% |
| ! | TTGGTACATATTTCTTCTTT+AGG | + | chr8_1:18849425-18849444 | None:intergenic | 25.0% |
| ! | AGAAATATGTACCAAATTTG+TGG | - | chr8_1:18849430-18849449 | Msa1183570:intron | 25.0% |
| !!! | TTGTAGTTTTAAAACTTAGG+GGG | - | chr8_1:18849963-18849982 | Msa1183570:intron | 25.0% |
| ! | GTGGAGATAACAAATTTATT+TGG | - | chr8_1:18850180-18850199 | Msa1183570:intron | 25.0% |
| ! | TTTGTTTATGTTGAGATAAC+AGG | - | chr8_1:18848382-18848401 | Msa1183570:CDS | 25.0% |
| ! | ACTGAAATATGTGATTATCT+TGG | - | chr8_1:18848525-18848544 | Msa1183570:CDS | 25.0% |
| ! | AATAAAACACATATAGCACA+TGG | + | chr8_1:18848556-18848575 | None:intergenic | 25.0% |
| !! | TTGTAGTTTTCAAACTTAGA+GGG | + | chr8_1:18848670-18848689 | None:intergenic | 25.0% |
| !! | ATTGTAGTTTTCAAACTTAG+AGG | + | chr8_1:18848671-18848690 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr8_1:18849171-18849190 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr8_1:18849171-18849190 | None:intergenic | 25.0% |
| ! | TATTCGAAAAAGTAATGTCA+TGG | - | chr8_1:18849385-18849404 | Msa1183570:intron | 25.0% |
| ! | TGGTACATATTTCTTCTTTA+GGG | + | chr8_1:18849424-18849443 | None:intergenic | 25.0% |
| ! | TTGGTACATATTTCTTCTTT+AGG | + | chr8_1:18849425-18849444 | None:intergenic | 25.0% |
| ! | AGAAATATGTACCAAATTTG+TGG | - | chr8_1:18849430-18849449 | Msa1183570:intron | 25.0% |
| !!! | TTGTAGTTTTAAAACTTAGG+GGG | - | chr8_1:18849963-18849982 | Msa1183570:intron | 25.0% |
| ! | GTGGAGATAACAAATTTATT+TGG | - | chr8_1:18850180-18850199 | Msa1183570:intron | 25.0% |
| ! | AGGTTTTGCTGATAATTTTG+TGG | - | chr8_1:18848402-18848421 | Msa1183570:CDS | 30.0% |
| !! | GCAACTTTTTGAAAGATAAG+GGG | + | chr8_1:18848639-18848658 | None:intergenic | 30.0% |
| !! | CGCAACTTTTTGAAAGATAA+GGG | + | chr8_1:18848640-18848659 | None:intergenic | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+AGG | + | chr8_1:18849992-18850011 | None:intergenic | 30.0% |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | - | chr8_1:18848644-18848663 | Msa1183570:CDS | 30.0% |
| ! | TTTTAGTCCCTTTGCATATT+TGG | - | chr8_1:18848705-18848724 | Msa1183570:intron | 30.0% |
| AAAAGGACCAAATATGCAAA+GGG | + | chr8_1:18848715-18848734 | None:intergenic | 30.0% | |
| AATAGGACCAAATATGCAAA+GGG | - | chr8_1:18849918-18849937 | Msa1183570:intron | 30.0% | |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | + | chr8_1:18848644-18848663 | None:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | - | chr8_1:18849991-18850010 | Msa1183570:intron | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+GGG | - | chr8_1:18849992-18850011 | Msa1183570:intron | 30.0% |
| ! | ATGTCACTGACAGTATATTT+TGG | - | chr8_1:18850127-18850146 | Msa1183570:intron | 30.0% |
| ! | AAATTTATTTGGTGACAACG+TGG | - | chr8_1:18850191-18850210 | Msa1183570:intron | 30.0% |
| ! | TTTGATTTCAACTGTTACTG+CGG | - | chr8_1:18850371-18850390 | Msa1183570:CDS | 30.0% |
| ! | AATTGTTTTCATCAGTTGGA+TGG | - | chr8_1:18850395-18850414 | Msa1183570:CDS | 30.0% |
| TTCAACAGATGAAAGCTATA+AGG | - | chr8_1:18850460-18850479 | Msa1183570:CDS | 30.0% | |
| ! | AGGTTTTGCTGATAATTTTG+TGG | - | chr8_1:18848402-18848421 | Msa1183570:CDS | 30.0% |
| !! | GCAACTTTTTGAAAGATAAG+GGG | + | chr8_1:18848639-18848658 | None:intergenic | 30.0% |
| !! | CGCAACTTTTTGAAAGATAA+GGG | + | chr8_1:18848640-18848659 | None:intergenic | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+AGG | + | chr8_1:18849992-18850011 | None:intergenic | 30.0% |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | - | chr8_1:18848644-18848663 | Msa1183570:CDS | 30.0% |
| ! | TTTTAGTCCCTTTGCATATT+TGG | - | chr8_1:18848705-18848724 | Msa1183570:intron | 30.0% |
| AAAAGGACCAAATATGCAAA+GGG | + | chr8_1:18848715-18848734 | None:intergenic | 30.0% | |
| AATAGGACCAAATATGCAAA+GGG | - | chr8_1:18849918-18849937 | Msa1183570:intron | 30.0% | |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | + | chr8_1:18848644-18848663 | None:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | - | chr8_1:18849991-18850010 | Msa1183570:intron | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+GGG | - | chr8_1:18849992-18850011 | Msa1183570:intron | 30.0% |
| ! | ATGTCACTGACAGTATATTT+TGG | - | chr8_1:18850127-18850146 | Msa1183570:intron | 30.0% |
| ! | AAATTTATTTGGTGACAACG+TGG | - | chr8_1:18850191-18850210 | Msa1183570:intron | 30.0% |
| ! | TTTGATTTCAACTGTTACTG+CGG | - | chr8_1:18850371-18850390 | Msa1183570:CDS | 30.0% |
| ! | AATTGTTTTCATCAGTTGGA+TGG | - | chr8_1:18850395-18850414 | Msa1183570:CDS | 30.0% |
| TTCAACAGATGAAAGCTATA+AGG | - | chr8_1:18850460-18850479 | Msa1183570:CDS | 30.0% | |
| !!! | TCTACTTTTTTGGACACTCA+TGG | - | chr8_1:18848357-18848376 | Msa1183570:CDS | 35.0% |
| ACATATTTCAGTAGACCAAC+AGG | + | chr8_1:18848517-18848536 | None:intergenic | 35.0% | |
| TGCAAAGGGACTAAAACATA+GGG | + | chr8_1:18848701-18848720 | None:intergenic | 35.0% | |
| ATGCAAAGGGACTAAAACAT+AGG | + | chr8_1:18848702-18848721 | None:intergenic | 35.0% | |
| CAAAAGGACCAAATATGCAA+AGG | + | chr8_1:18848716-18848735 | None:intergenic | 35.0% | |
| ! | CTTTGCATATTTGGTCCTTT+TGG | - | chr8_1:18848714-18848733 | Msa1183570:intron | 35.0% |
| CTTGGTCAAAATTGACCAAA+AGG | + | chr8_1:18848732-18848751 | None:intergenic | 35.0% | |
| ATACAACTTGGCCACAAATT+TGG | + | chr8_1:18849444-18849463 | None:intergenic | 35.0% | |
| ! | TTTGACATTCTAAAGACGCA+AGG | + | chr8_1:18849502-18849521 | None:intergenic | 35.0% |
| CTTGGTCAAAATTGACCAAT+AGG | - | chr8_1:18849901-18849920 | Msa1183570:intron | 35.0% | |
| CTTTGCATATTTGGTCCTAT+TGG | + | chr8_1:18849919-18849938 | None:intergenic | 35.0% | |
| CAATAGGACCAAATATGCAA+AGG | - | chr8_1:18849917-18849936 | Msa1183570:intron | 35.0% | |
| ATAGGACCAAATATGCAAAG+GGG | - | chr8_1:18849919-18849938 | Msa1183570:intron | 35.0% | |
| ! | TTTTAGCCCCTTTGCATATT+TGG | + | chr8_1:18849928-18849947 | None:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | - | chr8_1:18849993-18850012 | Msa1183570:intron | 35.0% |
| !! | GCAACTTTTTGAAAGATAGG+GGG | - | chr8_1:18849994-18850013 | Msa1183570:intron | 35.0% |
| ACAAGACTAAAGTGCAACTT+TGG | + | chr8_1:18850020-18850039 | None:intergenic | 35.0% | |
| GATTATTGCTCTCTCTACAA+TGG | - | chr8_1:18850052-18850071 | Msa1183570:intron | 35.0% | |
| AGAATAGTCACACAAGTTGT+AGG | + | chr8_1:18850095-18850114 | None:intergenic | 35.0% | |
| AACTTGTGTGACTATTCTCA+AGG | - | chr8_1:18850097-18850116 | Msa1183570:intron | 35.0% | |
| !!! | ACTCATCTTTTTTGTTGCTG+TGG | - | chr8_1:18850161-18850180 | Msa1183570:intron | 35.0% |
| ! | CGGTAATTGTTTTCATCAGT+TGG | - | chr8_1:18850391-18850410 | Msa1183570:CDS | 35.0% |
| TGACTGTTGTTGTGAAAATG+TGG | - | chr8_1:18850427-18850446 | Msa1183570:CDS | 35.0% | |
| GACTGTTGTTGTGAAAATGT+GGG | - | chr8_1:18850428-18850447 | Msa1183570:CDS | 35.0% | |
| TGTGAAAATGTGGGATGATT+TGG | - | chr8_1:18850437-18850456 | Msa1183570:CDS | 35.0% | |
| !!! | TCTACTTTTTTGGACACTCA+TGG | - | chr8_1:18848357-18848376 | Msa1183570:CDS | 35.0% |
| ACATATTTCAGTAGACCAAC+AGG | + | chr8_1:18848517-18848536 | None:intergenic | 35.0% | |
| TGCAAAGGGACTAAAACATA+GGG | + | chr8_1:18848701-18848720 | None:intergenic | 35.0% | |
| ATGCAAAGGGACTAAAACAT+AGG | + | chr8_1:18848702-18848721 | None:intergenic | 35.0% | |
| CAAAAGGACCAAATATGCAA+AGG | + | chr8_1:18848716-18848735 | None:intergenic | 35.0% | |
| ! | CTTTGCATATTTGGTCCTTT+TGG | - | chr8_1:18848714-18848733 | Msa1183570:intron | 35.0% |
| CTTGGTCAAAATTGACCAAA+AGG | + | chr8_1:18848732-18848751 | None:intergenic | 35.0% | |
| ATACAACTTGGCCACAAATT+TGG | + | chr8_1:18849444-18849463 | None:intergenic | 35.0% | |
| ! | TTTGACATTCTAAAGACGCA+AGG | + | chr8_1:18849502-18849521 | None:intergenic | 35.0% |
| CTTGGTCAAAATTGACCAAT+AGG | - | chr8_1:18849901-18849920 | Msa1183570:intron | 35.0% | |
| CTTTGCATATTTGGTCCTAT+TGG | + | chr8_1:18849919-18849938 | None:intergenic | 35.0% | |
| CAATAGGACCAAATATGCAA+AGG | - | chr8_1:18849917-18849936 | Msa1183570:intron | 35.0% | |
| ATAGGACCAAATATGCAAAG+GGG | - | chr8_1:18849919-18849938 | Msa1183570:intron | 35.0% | |
| ! | TTTTAGCCCCTTTGCATATT+TGG | + | chr8_1:18849928-18849947 | None:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | - | chr8_1:18849993-18850012 | Msa1183570:intron | 35.0% |
| !! | GCAACTTTTTGAAAGATAGG+GGG | - | chr8_1:18849994-18850013 | Msa1183570:intron | 35.0% |
| ACAAGACTAAAGTGCAACTT+TGG | + | chr8_1:18850020-18850039 | None:intergenic | 35.0% | |
| GATTATTGCTCTCTCTACAA+TGG | - | chr8_1:18850052-18850071 | Msa1183570:intron | 35.0% | |
| AGAATAGTCACACAAGTTGT+AGG | + | chr8_1:18850095-18850114 | None:intergenic | 35.0% | |
| AACTTGTGTGACTATTCTCA+AGG | - | chr8_1:18850097-18850116 | Msa1183570:intron | 35.0% | |
| !!! | ACTCATCTTTTTTGTTGCTG+TGG | - | chr8_1:18850161-18850180 | Msa1183570:intron | 35.0% |
| ! | CGGTAATTGTTTTCATCAGT+TGG | - | chr8_1:18850391-18850410 | Msa1183570:CDS | 35.0% |
| TGACTGTTGTTGTGAAAATG+TGG | - | chr8_1:18850427-18850446 | Msa1183570:CDS | 35.0% | |
| GACTGTTGTTGTGAAAATGT+GGG | - | chr8_1:18850428-18850447 | Msa1183570:CDS | 35.0% | |
| TGTGAAAATGTGGGATGATT+TGG | - | chr8_1:18850437-18850456 | Msa1183570:CDS | 35.0% | |
| ATCTTACAATACCCACCTGT+TGG | - | chr8_1:18848499-18848518 | Msa1183570:CDS | 40.0% | |
| ATTTCAGTAGACCAACAGGT+GGG | + | chr8_1:18848513-18848532 | None:intergenic | 40.0% | |
| TATTTCAGTAGACCAACAGG+TGG | + | chr8_1:18848514-18848533 | None:intergenic | 40.0% | |
| GCAAAGGGACTAAAACATAG+GGG | + | chr8_1:18848700-18848719 | None:intergenic | 40.0% | |
| ATGCAAAGGGGCTAAAAGAT+AGG | - | chr8_1:18849931-18849950 | Msa1183570:intron | 40.0% | |
| TGCAAAGGGGCTAAAAGATA+GGG | - | chr8_1:18849932-18849951 | Msa1183570:intron | 40.0% | |
| ACGGTTATCACTCATCTCAT+TGG | - | chr8_1:18850252-18850271 | Msa1183570:intron | 40.0% | |
| ! | AACTGGTGGGTCTTCTAATA+CGG | + | chr8_1:18850289-18850308 | None:intergenic | 40.0% |
| ! | ATAGCTTGCACAAGACAAAC+TGG | + | chr8_1:18850306-18850325 | None:intergenic | 40.0% |
| AGTTTGTCTTGTGCAAGCTA+TGG | - | chr8_1:18850305-18850324 | Msa1183570:CDS | 40.0% | |
| !!! | TGTGCAAGCTATGGTTTTGA+TGG | - | chr8_1:18850314-18850333 | Msa1183570:CDS | 40.0% |
| ATGTGTTGTGTGTGTGTTGT+TGG | - | chr8_1:18850344-18850363 | Msa1183570:CDS | 40.0% | |
| ! | GTTTTCATCAGTTGGATGGT+TGG | - | chr8_1:18850399-18850418 | Msa1183570:CDS | 40.0% |
| ATCTTACAATACCCACCTGT+TGG | - | chr8_1:18848499-18848518 | Msa1183570:CDS | 40.0% | |
| ATTTCAGTAGACCAACAGGT+GGG | + | chr8_1:18848513-18848532 | None:intergenic | 40.0% | |
| TATTTCAGTAGACCAACAGG+TGG | + | chr8_1:18848514-18848533 | None:intergenic | 40.0% | |
| GCAAAGGGACTAAAACATAG+GGG | + | chr8_1:18848700-18848719 | None:intergenic | 40.0% | |
| ATGCAAAGGGGCTAAAAGAT+AGG | - | chr8_1:18849931-18849950 | Msa1183570:intron | 40.0% | |
| TGCAAAGGGGCTAAAAGATA+GGG | - | chr8_1:18849932-18849951 | Msa1183570:intron | 40.0% | |
| ACGGTTATCACTCATCTCAT+TGG | - | chr8_1:18850252-18850271 | Msa1183570:intron | 40.0% | |
| ! | AACTGGTGGGTCTTCTAATA+CGG | + | chr8_1:18850289-18850308 | None:intergenic | 40.0% |
| ! | ATAGCTTGCACAAGACAAAC+TGG | + | chr8_1:18850306-18850325 | None:intergenic | 40.0% |
| AGTTTGTCTTGTGCAAGCTA+TGG | - | chr8_1:18850305-18850324 | Msa1183570:CDS | 40.0% | |
| !!! | TGTGCAAGCTATGGTTTTGA+TGG | - | chr8_1:18850314-18850333 | Msa1183570:CDS | 40.0% |
| ATGTGTTGTGTGTGTGTTGT+TGG | - | chr8_1:18850344-18850363 | Msa1183570:CDS | 40.0% | |
| ! | GTTTTCATCAGTTGGATGGT+TGG | - | chr8_1:18850399-18850418 | Msa1183570:CDS | 40.0% |
| TGACCAAGTCAACACATACG+TGG | - | chr8_1:18848744-18848763 | Msa1183570:intron | 45.0% | |
| !! | ATGCCACGTATGTGTTGACT+TGG | + | chr8_1:18848750-18848769 | None:intergenic | 45.0% |
| TGGCCAAGTTGTATTCTCGT+CGG | - | chr8_1:18849450-18849469 | Msa1183570:intron | 45.0% | |
| ACACCGACGAGAATACAACT+TGG | + | chr8_1:18849456-18849475 | None:intergenic | 45.0% | |
| GCAAAGGGGCTAAAAGATAG+GGG | - | chr8_1:18849933-18849952 | Msa1183570:intron | 45.0% | |
| CTTGCACAAGACAAACTGGT+GGG | + | chr8_1:18850302-18850321 | None:intergenic | 45.0% | |
| TGACCAAGTCAACACATACG+TGG | - | chr8_1:18848744-18848763 | Msa1183570:intron | 45.0% | |
| !! | ATGCCACGTATGTGTTGACT+TGG | + | chr8_1:18848750-18848769 | None:intergenic | 45.0% |
| TGGCCAAGTTGTATTCTCGT+CGG | - | chr8_1:18849450-18849469 | Msa1183570:intron | 45.0% | |
| ACACCGACGAGAATACAACT+TGG | + | chr8_1:18849456-18849475 | None:intergenic | 45.0% | |
| GCAAAGGGGCTAAAAGATAG+GGG | - | chr8_1:18849933-18849952 | Msa1183570:intron | 45.0% | |
| CTTGCACAAGACAAACTGGT+GGG | + | chr8_1:18850302-18850321 | None:intergenic | 45.0% | |
| !! | AAAAAAATATTAAAAAAATC+TGG | - | chr8_1:18848849-18848868 | Msa1183570:intron | 5.0% |
| !! | AAAAAATTTGAAAAAAAATA+CGG | + | chr8_1:18849612-18849631 | None:intergenic | 5.0% |
| !! | AAAAAAATAATAAAAAATTC+TGG | + | chr8_1:18849805-18849824 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAAATC+TGG | - | chr8_1:18848849-18848868 | Msa1183570:intron | 5.0% |
| !! | AAAAAATTTGAAAAAAAATA+CGG | + | chr8_1:18849612-18849631 | None:intergenic | 5.0% |
| !! | AAAAAAATAATAAAAAATTC+TGG | + | chr8_1:18849805-18849824 | None:intergenic | 5.0% |
| !! | ATGCCACGTATGCGTTGACT+TGG | - | chr8_1:18849883-18849902 | Msa1183570:intron | 50.0% |
| TGACCAAGTCAACGCATACG+TGG | + | chr8_1:18849889-18849908 | None:intergenic | 50.0% | |
| GCTTGCACAAGACAAACTGG+TGG | + | chr8_1:18850303-18850322 | None:intergenic | 50.0% | |
| !! | ATGCCACGTATGCGTTGACT+TGG | - | chr8_1:18849883-18849902 | Msa1183570:intron | 50.0% |
| TGACCAAGTCAACGCATACG+TGG | + | chr8_1:18849889-18849908 | None:intergenic | 50.0% | |
| GCTTGCACAAGACAAACTGG+TGG | + | chr8_1:18850303-18850322 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 18848316 | 18850506 | 18848316 | ID=Msa1183570;Name=Msa1183570 |
| chr8_1 | mRNA | 18848316 | 18850506 | 18848316 | ID=Msa1183570-mRNA-1;Parent=Msa1183570;Name=Msa1183570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0.5|2|0|194 |
| chr8_1 | exon | 18850302 | 18850506 | 18850302 | ID=Msa1183570-mRNA-1:exon:7263;Parent=Msa1183570-mRNA-1 |
| chr8_1 | exon | 18848316 | 18848695 | 18848316 | ID=Msa1183570-mRNA-1:exon:7262;Parent=Msa1183570-mRNA-1 |
| chr8_1 | CDS | 18850302 | 18850506 | 18850302 | ID=Msa1183570-mRNA-1:cds;Parent=Msa1183570-mRNA-1 |
| chr8_1 | CDS | 18848316 | 18848695 | 18848316 | ID=Msa1183570-mRNA-1:cds;Parent=Msa1183570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
