AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127140 MtrunA17_Chr7g0268681 95.288 191 8 1 1 190 1 191 1.64e-131 366
Msa1127140 MtrunA17_Chr4g0066721 42.373 177 91 2 1 166 1 177 4.11e-44 145
Msa1127140 MtrunA17_Chr2g0286341 43.636 165 86 2 31 189 26 189 7.35e-39 131
Msa1127140 MtrunA17_Chr4g0066711 34.783 161 95 4 26 181 26 181 2.76e-22 89.0
Msa1127140 MtrunA17_Chr8g0381001 30.994 171 108 4 2 166 4 170 5.53e-21 85.9
Msa1127140 MtrunA17_Chr4g0042551 29.560 159 107 3 21 177 52 207 2.66e-17 76.6
Msa1127140 MtrunA17_Chr2g0303151 29.452 146 97 2 45 184 44 189 5.63e-16 72.8
Msa1127140 MtrunA17_Chr5g0417761 28.571 154 105 3 26 177 26 176 6.20e-15 69.7
Msa1127140 MtrunA17_Chr4g0021111 27.950 161 106 3 21 181 1 151 2.62e-14 67.4
Msa1127140 MtrunA17_Chr7g0217691 27.500 160 111 3 20 177 20 176 9.96e-14 66.2
Msa1127140 MtrunA17_Chr7g0251531 29.078 141 94 3 31 169 33 169 1.78e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127140 AT4G15630.1 39.267 191 109 2 1 185 1 190 4.27e-42 140
Msa1127140 AT4G15620.1 37.895 190 111 2 1 184 1 189 6.99e-39 132
Msa1127140 AT4G15610.1 30.994 171 114 3 1 167 1 171 2.40e-23 92.0
Msa1127140 AT3G06390.1 34.074 135 85 2 29 159 38 172 1.45e-17 77.0
Msa1127140 AT5G44550.1 33.125 160 99 3 32 184 22 180 3.98e-17 75.9
Msa1127140 AT4G15610.2 31.532 111 70 2 63 167 5 115 2.03e-16 72.8
Msa1127140 AT4G20390.1 36.090 133 79 3 32 158 22 154 5.93e-16 72.8
Msa1127140 AT5G15290.1 27.211 147 100 3 21 164 21 163 3.72e-15 70.5
Msa1127140 AT1G14160.1 27.607 163 115 3 26 187 49 209 4.76e-12 62.8
Msa1127140 AT4G16442.1 27.273 176 115 4 17 185 2 171 2.64e-11 60.1

Find 49 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATGTGTTATTTATTCT+AGG 0.225804 7_3:+78637237 Msa1127140:three_prime_UTR
TTCAAAGAGTACTTACTATA+TGG 0.228595 7_3:+78635379 Msa1127140:exon
GCTACTATCATTGTGGGTTT+TGG 0.265618 7_3:+78635524 Msa1127140:CDS
GATGTGTTGCTTAGGGTTCT+TGG 0.291243 7_3:+78635482 Msa1127140:CDS
GAGAGTGAGCCACAAGTAAA+AGG 0.319910 7_3:-78637163 None:intergenic
ACCATCTTCTAAAATAAAAT+AGG 0.330418 7_3:-78637422 None:intergenic
GCTTTGGTCCTATCTATCAT+TGG 0.335452 7_3:+78637128 Msa1127140:CDS
TTCATATGCTGCAATTTCTA+TGG 0.345306 7_3:+78636902 Msa1127140:CDS
CACTGCACCAGCAGCTCCAT+TGG 0.363063 7_3:-78637018 None:intergenic
AATGCTAGACCTAGTTATAA+TGG 0.374221 7_3:+78636980 Msa1127140:CDS
CATCCACACTTGTCTTTGAC+TGG 0.380763 7_3:-78635406 None:intergenic
TCTAGTTTGATCTATAATAA+TGG 0.389846 7_3:-78637196 None:intergenic
GTGTTTATGATGTGTTGCTT+AGG 0.399152 7_3:+78635474 Msa1127140:CDS
CTCACTGCTACTATCATTGT+GGG 0.403424 7_3:+78635518 Msa1127140:CDS
TGAGAGTAAGGTGGGGAGGT+TGG 0.405105 7_3:-78635248 None:intergenic
GCTGGTGCAGTGGGAGTGTT+AGG 0.413062 7_3:+78637029 Msa1127140:CDS
TGAGTGAATGAGAGTAAGGT+GGG 0.419864 7_3:-78635256 None:intergenic
TCAAAGAGTACTTACTATAT+GGG 0.423525 7_3:+78635380 Msa1127140:exon
TTCTCAGCCAATGGAGCTGC+TGG 0.424568 7_3:+78637011 Msa1127140:CDS
TCACAGCGATGTGAAGGTTA+TGG 0.427097 7_3:+78635433 Msa1127140:CDS
AACAGTCATGTGACGACAAT+AGG 0.431776 7_3:-78637105 None:intergenic
TGTTTATGATGTGTTGCTTA+GGG 0.433057 7_3:+78635475 Msa1127140:CDS
CAGTGGAACCAATGATAGAT+AGG 0.464992 7_3:-78637136 None:intergenic
TCTATGAGTGAATGAGAGTA+AGG 0.470048 7_3:-78635260 None:intergenic
TCGTCACATGACTGTTGCTT+TGG 0.473880 7_3:+78637112 Msa1127140:CDS
TTCTTGGTGACAAATGCTAT+AGG 0.474689 7_3:+78636876 Msa1127140:CDS
TCTCACTGCTACTATCATTG+TGG 0.489600 7_3:+78635517 Msa1127140:CDS
AAATAGTAGTAAGATTAGAA+AGG 0.493617 7_3:-78635287 None:intergenic
AAGGAAACTCGCACGTGCAA+TGG 0.499701 7_3:+78637057 Msa1127140:CDS
GGAGGTTGGAAATGCATTCA+AGG 0.503857 7_3:-78635234 None:intergenic
CAGTCAAAGACAAGTGTGGA+TGG 0.535899 7_3:+78635407 Msa1127140:CDS
TGTGTAAGGAACGTTAAAGT+AGG 0.536097 7_3:-78635321 None:intergenic
GCATTACTCTTCTCAGCCAA+TGG 0.539824 7_3:+78637002 Msa1127140:CDS
ATGAGTGAATGAGAGTAAGG+TGG 0.542284 7_3:-78635257 None:intergenic
AATGGAGCTGCTGGTGCAGT+GGG 0.549722 7_3:+78637020 Msa1127140:CDS
ATTCAAAGCTACTGCTAAGT+GGG 0.553173 7_3:+78635583 Msa1127140:CDS
AACACATTAAATATACATGT+AGG 0.554156 7_3:+78635198 None:intergenic
TTAGCAAACTCACTTAATAG+AGG 0.559874 7_3:-78637339 None:intergenic
CAATGGAGCTGCTGGTGCAG+TGG 0.564486 7_3:+78637019 Msa1127140:CDS
AATTCAAAGCTACTGCTAAG+TGG 0.570996 7_3:+78635582 Msa1127140:CDS
ACACATTAAATATACATGTA+GGG 0.571629 7_3:+78635199 None:intergenic
GTGGGAGTGTTAGGACAGAA+AGG 0.578933 7_3:+78637038 Msa1127140:CDS
TCAACAATTGCAAGAACCAG+TGG 0.593273 7_3:+78636930 Msa1127140:CDS
TGGAGTTCACAGCGATGTGA+AGG 0.594175 7_3:+78635427 Msa1127140:CDS
AGAGTAATGCCATTATAACT+AGG 0.597714 7_3:-78636989 None:intergenic
TGAATGAGAGTAAGGTGGGG+AGG 0.633538 7_3:-78635252 None:intergenic
AAACCAGTCAAAGACAAGTG+TGG 0.653780 7_3:+78635403 Msa1127140:CDS
GAGTGAATGAGAGTAAGGTG+GGG 0.682004 7_3:-78635255 None:intergenic
CACAAGTAAAAGGAAGACAG+TGG 0.729118 7_3:-78637153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAATTGTAAAAGAA+AGG - chr7_3:78635866-78635885 None:intergenic 10.0%
!! TATAATATGTTAGTTAATAA+CGG + chr7_3:78636149-78636168 Msa1127140:intron 10.0%
!!! TTTTTCTTCAAAAAAATTAA+TGG - chr7_3:78636469-78636488 None:intergenic 10.0%
!!! AAGTTGTTTTTATTAAATAT+AGG + chr7_3:78637295-78637314 Msa1127140:three_prime_UTR 10.0%
!! TTTAAAAAATTGTAAAAGAA+AGG - chr7_3:78635866-78635885 None:intergenic 10.0%
!! TATAATATGTTAGTTAATAA+CGG + chr7_3:78636149-78636168 Msa1127140:intron 10.0%
!!! TTTTTCTTCAAAAAAATTAA+TGG - chr7_3:78636469-78636488 None:intergenic 10.0%
!!! AAGTTGTTTTTATTAAATAT+AGG + chr7_3:78637295-78637314 Msa1127140:three_prime_UTR 10.0%
!!! ATATTTAGTAGAATAGTTTT+TGG - chr7_3:78635347-78635366 None:intergenic 15.0%
!! ATTTCAAAAACTAAATTATC+TGG - chr7_3:78635676-78635695 None:intergenic 15.0%
!!! ATTTAGTTTTTGAAATGTTA+AGG + chr7_3:78635680-78635699 Msa1127140:intron 15.0%
!!! TTTAGTTTTTGAAATGTTAA+GGG + chr7_3:78635681-78635700 Msa1127140:intron 15.0%
!! TTTCATTAACAAATGTTATA+AGG + chr7_3:78635804-78635823 Msa1127140:intron 15.0%
!! TTCATTAACAAATGTTATAA+GGG + chr7_3:78635805-78635824 Msa1127140:intron 15.0%
!!! TATTTTTTTGAAAATGTTTC+TGG + chr7_3:78635928-78635947 Msa1127140:intron 15.0%
!!! GTATATAGTTTTGAAAATTT+AGG - chr7_3:78636030-78636049 None:intergenic 15.0%
!!! AAATGTTTTAAGAAAGTAAA+TGG + chr7_3:78636053-78636072 Msa1127140:intron 15.0%
!! AGTGACTAAAAATAAAATAA+AGG - chr7_3:78636130-78636149 None:intergenic 15.0%
!!! ATATATTGATTGATTACTAA+TGG - chr7_3:78636242-78636261 None:intergenic 15.0%
!!! GATGAATTAATTTTTTTGAA+AGG - chr7_3:78636381-78636400 None:intergenic 15.0%
!! ATACATTTATATTCCAAATA+GGG - chr7_3:78636617-78636636 None:intergenic 15.0%
!! AATACATTTATATTCCAAAT+AGG - chr7_3:78636618-78636637 None:intergenic 15.0%
!!! TATTTGGAATATAAATGTAT+TGG + chr7_3:78636617-78636636 Msa1127140:intron 15.0%
!! AAAAAAATATAAAACAAACG+AGG - chr7_3:78636806-78636825 None:intergenic 15.0%
!!! ATATTTAGTAGAATAGTTTT+TGG - chr7_3:78635347-78635366 None:intergenic 15.0%
!! ATTTCAAAAACTAAATTATC+TGG - chr7_3:78635676-78635695 None:intergenic 15.0%
!!! ATTTAGTTTTTGAAATGTTA+AGG + chr7_3:78635680-78635699 Msa1127140:intron 15.0%
!!! TTTAGTTTTTGAAATGTTAA+GGG + chr7_3:78635681-78635700 Msa1127140:intron 15.0%
!! TTTCATTAACAAATGTTATA+AGG + chr7_3:78635804-78635823 Msa1127140:intron 15.0%
!! TTCATTAACAAATGTTATAA+GGG + chr7_3:78635805-78635824 Msa1127140:intron 15.0%
!!! TATTTTTTTGAAAATGTTTC+TGG + chr7_3:78635928-78635947 Msa1127140:intron 15.0%
!!! GTATATAGTTTTGAAAATTT+AGG - chr7_3:78636030-78636049 None:intergenic 15.0%
!!! AAATGTTTTAAGAAAGTAAA+TGG + chr7_3:78636053-78636072 Msa1127140:intron 15.0%
!! AGTGACTAAAAATAAAATAA+AGG - chr7_3:78636130-78636149 None:intergenic 15.0%
!!! ATATATTGATTGATTACTAA+TGG - chr7_3:78636242-78636261 None:intergenic 15.0%
!!! GATGAATTAATTTTTTTGAA+AGG - chr7_3:78636381-78636400 None:intergenic 15.0%
!! ATACATTTATATTCCAAATA+GGG - chr7_3:78636617-78636636 None:intergenic 15.0%
!! AATACATTTATATTCCAAAT+AGG - chr7_3:78636618-78636637 None:intergenic 15.0%
!!! TATTTGGAATATAAATGTAT+TGG + chr7_3:78636617-78636636 Msa1127140:intron 15.0%
!! AAAAAAATATAAAACAAACG+AGG - chr7_3:78636806-78636825 None:intergenic 15.0%
!! AAATAGTAGTAAGATTAGAA+AGG - chr7_3:78635290-78635309 None:intergenic 20.0%
!!! TTTCTTAATTAGTGCTATTA+GGG - chr7_3:78635758-78635777 None:intergenic 20.0%
!!! TTTTCTTAATTAGTGCTATT+AGG - chr7_3:78635759-78635778 None:intergenic 20.0%
!! AAAAAATTGTAAAAGAAAGG+TGG - chr7_3:78635863-78635882 None:intergenic 20.0%
!! AGATAATGTAGTGAATATTT+GGG - chr7_3:78635977-78635996 None:intergenic 20.0%
!! AAGATAATGTAGTGAATATT+TGG - chr7_3:78635978-78635997 None:intergenic 20.0%
!! TAATGACAGACTTTAATTAA+TGG - chr7_3:78636499-78636518 None:intergenic 20.0%
!! ATAAATAAAGTGATGTTGAT+TGG - chr7_3:78636571-78636590 None:intergenic 20.0%
!!! CATCACTTTATTTATCATAT+TGG + chr7_3:78636576-78636595 Msa1127140:intron 20.0%
!!! ATGTATTGGTATTTTTTAAG+AGG + chr7_3:78636631-78636650 Msa1127140:intron 20.0%
!!! TCTAGTTTGATCTATAATAA+TGG - chr7_3:78637199-78637218 None:intergenic 20.0%
!!! GTTAATGTGTTATTTATTCT+AGG + chr7_3:78637237-78637256 Msa1127140:three_prime_UTR 20.0%
!!! TTGCTTCTTGTTTTTTATAT+GGG - chr7_3:78637387-78637406 None:intergenic 20.0%
!!! TTTGCTTCTTGTTTTTTATA+TGG - chr7_3:78637388-78637407 None:intergenic 20.0%
!!! TCCTATTTTATTTTAGAAGA+TGG + chr7_3:78637421-78637440 Msa1127140:three_prime_UTR 20.0%
!!! ACCATCTTCTAAAATAAAAT+AGG - chr7_3:78637425-78637444 None:intergenic 20.0%
!!! ATTTTATTTTAGAAGATGGT+AGG + chr7_3:78637425-78637444 Msa1127140:three_prime_UTR 20.0%
!! AAATAGTAGTAAGATTAGAA+AGG - chr7_3:78635290-78635309 None:intergenic 20.0%
!!! TTTCTTAATTAGTGCTATTA+GGG - chr7_3:78635758-78635777 None:intergenic 20.0%
!!! TTTTCTTAATTAGTGCTATT+AGG - chr7_3:78635759-78635778 None:intergenic 20.0%
!! AAAAAATTGTAAAAGAAAGG+TGG - chr7_3:78635863-78635882 None:intergenic 20.0%
!! AGATAATGTAGTGAATATTT+GGG - chr7_3:78635977-78635996 None:intergenic 20.0%
!! AAGATAATGTAGTGAATATT+TGG - chr7_3:78635978-78635997 None:intergenic 20.0%
!! TAATGACAGACTTTAATTAA+TGG - chr7_3:78636499-78636518 None:intergenic 20.0%
!! ATAAATAAAGTGATGTTGAT+TGG - chr7_3:78636571-78636590 None:intergenic 20.0%
!!! CATCACTTTATTTATCATAT+TGG + chr7_3:78636576-78636595 Msa1127140:intron 20.0%
!!! ATGTATTGGTATTTTTTAAG+AGG + chr7_3:78636631-78636650 Msa1127140:intron 20.0%
!!! TCTAGTTTGATCTATAATAA+TGG - chr7_3:78637199-78637218 None:intergenic 20.0%
!!! GTTAATGTGTTATTTATTCT+AGG + chr7_3:78637237-78637256 Msa1127140:three_prime_UTR 20.0%
!!! TTGCTTCTTGTTTTTTATAT+GGG - chr7_3:78637387-78637406 None:intergenic 20.0%
!!! TTTGCTTCTTGTTTTTTATA+TGG - chr7_3:78637388-78637407 None:intergenic 20.0%
!!! TCCTATTTTATTTTAGAAGA+TGG + chr7_3:78637421-78637440 Msa1127140:three_prime_UTR 20.0%
!!! ACCATCTTCTAAAATAAAAT+AGG - chr7_3:78637425-78637444 None:intergenic 20.0%
!!! ATTTTATTTTAGAAGATGGT+AGG + chr7_3:78637425-78637444 Msa1127140:three_prime_UTR 20.0%
!!! TTCAAAGAGTACTTACTATA+TGG + chr7_3:78635379-78635398 Msa1127140:exon 25.0%
!!! TCAAAGAGTACTTACTATAT+GGG + chr7_3:78635380-78635399 Msa1127140:exon 25.0%
! TCAAAAACTAAATTATCTGG+TGG - chr7_3:78635673-78635692 None:intergenic 25.0%
!! TGTTTTGTATTTTCCTTCAT+AGG + chr7_3:78635717-78635736 Msa1127140:intron 25.0%
!! TATTTGGGATAAAGATAAGA+TGG - chr7_3:78635962-78635981 None:intergenic 25.0%
!! CGGTATATTTTTCATTCAAA+AGG + chr7_3:78636193-78636212 Msa1127140:intron 25.0%
!! TTGATTGGTTAAGCTTTAAT+GGG - chr7_3:78636556-78636575 None:intergenic 25.0%
!!! TTTTTAAGAGGTGTGATATT+TGG + chr7_3:78636643-78636662 Msa1127140:intron 25.0%
!!! TTCAAAGAGTACTTACTATA+TGG + chr7_3:78635379-78635398 Msa1127140:exon 25.0%
!!! TCAAAGAGTACTTACTATAT+GGG + chr7_3:78635380-78635399 Msa1127140:exon 25.0%
! TCAAAAACTAAATTATCTGG+TGG - chr7_3:78635673-78635692 None:intergenic 25.0%
!! TGTTTTGTATTTTCCTTCAT+AGG + chr7_3:78635717-78635736 Msa1127140:intron 25.0%
!! TATTTGGGATAAAGATAAGA+TGG - chr7_3:78635962-78635981 None:intergenic 25.0%
!! CGGTATATTTTTCATTCAAA+AGG + chr7_3:78636193-78636212 Msa1127140:intron 25.0%
!! TTGATTGGTTAAGCTTTAAT+GGG - chr7_3:78636556-78636575 None:intergenic 25.0%
!!! TTTTTAAGAGGTGTGATATT+TGG + chr7_3:78636643-78636662 Msa1127140:intron 25.0%
!!! AGAATAGTTTTTGGTGTGTA+AGG - chr7_3:78635338-78635357 None:intergenic 30.0%
!! TGTTTATGATGTGTTGCTTA+GGG + chr7_3:78635475-78635494 Msa1127140:CDS 30.0%
AATAAAAACACTATGTGCTG+AGG - chr7_3:78636099-78636118 None:intergenic 30.0%
ACAATTTCACAAAGATGCAT+TGG + chr7_3:78636409-78636428 Msa1127140:intron 30.0%
ACTTAACAAATCAAATCAGC+TGG + chr7_3:78636530-78636549 Msa1127140:intron 30.0%
! GTTGATTGGTTAAGCTTTAA+TGG - chr7_3:78636557-78636576 None:intergenic 30.0%
CATTTATATTCCAAATAGGG+AGG - chr7_3:78636614-78636633 None:intergenic 30.0%
!! CAGTCACTTTGAAATTAGTT+AGG - chr7_3:78636835-78636854 None:intergenic 30.0%
! ATTCTCTCTTAGGTTTTTCT+TGG + chr7_3:78636860-78636879 Msa1127140:intron 30.0%
TTCATATGCTGCAATTTCTA+TGG + chr7_3:78636902-78636921 Msa1127140:CDS 30.0%
AATGCTAGACCTAGTTATAA+TGG + chr7_3:78636980-78636999 Msa1127140:CDS 30.0%
AGAGTAATGCCATTATAACT+AGG - chr7_3:78636992-78637011 None:intergenic 30.0%
TTAGCAAACTCACTTAATAG+AGG - chr7_3:78637342-78637361 None:intergenic 30.0%
!!! AGAATAGTTTTTGGTGTGTA+AGG - chr7_3:78635338-78635357 None:intergenic 30.0%
!! TGTTTATGATGTGTTGCTTA+GGG + chr7_3:78635475-78635494 Msa1127140:CDS 30.0%
AATAAAAACACTATGTGCTG+AGG - chr7_3:78636099-78636118 None:intergenic 30.0%
ACAATTTCACAAAGATGCAT+TGG + chr7_3:78636409-78636428 Msa1127140:intron 30.0%
ACTTAACAAATCAAATCAGC+TGG + chr7_3:78636530-78636549 Msa1127140:intron 30.0%
! GTTGATTGGTTAAGCTTTAA+TGG - chr7_3:78636557-78636576 None:intergenic 30.0%
CATTTATATTCCAAATAGGG+AGG - chr7_3:78636614-78636633 None:intergenic 30.0%
!! CAGTCACTTTGAAATTAGTT+AGG - chr7_3:78636835-78636854 None:intergenic 30.0%
! ATTCTCTCTTAGGTTTTTCT+TGG + chr7_3:78636860-78636879 Msa1127140:intron 30.0%
TTCATATGCTGCAATTTCTA+TGG + chr7_3:78636902-78636921 Msa1127140:CDS 30.0%
AATGCTAGACCTAGTTATAA+TGG + chr7_3:78636980-78636999 Msa1127140:CDS 30.0%
AGAGTAATGCCATTATAACT+AGG - chr7_3:78636992-78637011 None:intergenic 30.0%
TTAGCAAACTCACTTAATAG+AGG - chr7_3:78637342-78637361 None:intergenic 30.0%
TCTATGAGTGAATGAGAGTA+AGG - chr7_3:78635263-78635282 None:intergenic 35.0%
TGTGTAAGGAACGTTAAAGT+AGG - chr7_3:78635324-78635343 None:intergenic 35.0%
!! GTGTTTATGATGTGTTGCTT+AGG + chr7_3:78635474-78635493 Msa1127140:CDS 35.0%
AATTCAAAGCTACTGCTAAG+TGG + chr7_3:78635582-78635601 Msa1127140:CDS 35.0%
ATTCAAAGCTACTGCTAAGT+GGG + chr7_3:78635583-78635602 Msa1127140:CDS 35.0%
! AGAAAGAGCATATAGTAGAG+AGG - chr7_3:78635648-78635667 None:intergenic 35.0%
! CTTGTTAACTTGACCTATGA+AGG - chr7_3:78635733-78635752 None:intergenic 35.0%
AAGGTGGTAGTACAAATGAA+AGG - chr7_3:78635847-78635866 None:intergenic 35.0%
ATGTACTTAAGCTTGTGAGT+AGG + chr7_3:78636281-78636300 Msa1127140:intron 35.0%
TGTACTTAAGCTTGTGAGTA+GGG + chr7_3:78636282-78636301 Msa1127140:intron 35.0%
TATATTCCAAATAGGGAGGA+AGG - chr7_3:78636610-78636629 None:intergenic 35.0%
! GACTGACTTTATTCTCTCTT+AGG + chr7_3:78636850-78636869 Msa1127140:intron 35.0%
! TTCTTGGTGACAAATGCTAT+AGG + chr7_3:78636876-78636895 Msa1127140:CDS 35.0%
!!! TAGTGCTGTTTTATTTCCAC+TGG - chr7_3:78636949-78636968 None:intergenic 35.0%
TCTATGAGTGAATGAGAGTA+AGG - chr7_3:78635263-78635282 None:intergenic 35.0%
TGTGTAAGGAACGTTAAAGT+AGG - chr7_3:78635324-78635343 None:intergenic 35.0%
!! GTGTTTATGATGTGTTGCTT+AGG + chr7_3:78635474-78635493 Msa1127140:CDS 35.0%
AATTCAAAGCTACTGCTAAG+TGG + chr7_3:78635582-78635601 Msa1127140:CDS 35.0%
ATTCAAAGCTACTGCTAAGT+GGG + chr7_3:78635583-78635602 Msa1127140:CDS 35.0%
! AGAAAGAGCATATAGTAGAG+AGG - chr7_3:78635648-78635667 None:intergenic 35.0%
! CTTGTTAACTTGACCTATGA+AGG - chr7_3:78635733-78635752 None:intergenic 35.0%
AAGGTGGTAGTACAAATGAA+AGG - chr7_3:78635847-78635866 None:intergenic 35.0%
ATGTACTTAAGCTTGTGAGT+AGG + chr7_3:78636281-78636300 Msa1127140:intron 35.0%
TGTACTTAAGCTTGTGAGTA+GGG + chr7_3:78636282-78636301 Msa1127140:intron 35.0%
TATATTCCAAATAGGGAGGA+AGG - chr7_3:78636610-78636629 None:intergenic 35.0%
! GACTGACTTTATTCTCTCTT+AGG + chr7_3:78636850-78636869 Msa1127140:intron 35.0%
! TTCTTGGTGACAAATGCTAT+AGG + chr7_3:78636876-78636895 Msa1127140:CDS 35.0%
!!! TAGTGCTGTTTTATTTCCAC+TGG - chr7_3:78636949-78636968 None:intergenic 35.0%
TGAGTGAATGAGAGTAAGGT+GGG - chr7_3:78635259-78635278 None:intergenic 40.0%
ATGAGTGAATGAGAGTAAGG+TGG - chr7_3:78635260-78635279 None:intergenic 40.0%
AAACCAGTCAAAGACAAGTG+TGG + chr7_3:78635403-78635422 Msa1127140:CDS 40.0%
TCTCACTGCTACTATCATTG+TGG + chr7_3:78635517-78635536 Msa1127140:CDS 40.0%
CTCACTGCTACTATCATTGT+GGG + chr7_3:78635518-78635537 Msa1127140:CDS 40.0%
! GCTACTATCATTGTGGGTTT+TGG + chr7_3:78635524-78635543 Msa1127140:CDS 40.0%
!! TATCATTGTGGGTTTTGGCA+AGG + chr7_3:78635529-78635548 Msa1127140:CDS 40.0%
TGTGAGTAGGGTTTAGTAGT+TGG + chr7_3:78636294-78636313 Msa1127140:intron 40.0%
TCAACAATTGCAAGAACCAG+TGG + chr7_3:78636930-78636949 Msa1127140:CDS 40.0%
AACAGTCATGTGACGACAAT+AGG - chr7_3:78637108-78637127 None:intergenic 40.0%
GCTTTGGTCCTATCTATCAT+TGG + chr7_3:78637128-78637147 Msa1127140:CDS 40.0%
CAGTGGAACCAATGATAGAT+AGG - chr7_3:78637139-78637158 None:intergenic 40.0%
CACAAGTAAAAGGAAGACAG+TGG - chr7_3:78637156-78637175 None:intergenic 40.0%
! CACTGTCTTCCTTTTACTTG+TGG + chr7_3:78637154-78637173 Msa1127140:CDS 40.0%
TGAGTGAATGAGAGTAAGGT+GGG - chr7_3:78635259-78635278 None:intergenic 40.0%
ATGAGTGAATGAGAGTAAGG+TGG - chr7_3:78635260-78635279 None:intergenic 40.0%
AAACCAGTCAAAGACAAGTG+TGG + chr7_3:78635403-78635422 Msa1127140:CDS 40.0%
TCTCACTGCTACTATCATTG+TGG + chr7_3:78635517-78635536 Msa1127140:CDS 40.0%
CTCACTGCTACTATCATTGT+GGG + chr7_3:78635518-78635537 Msa1127140:CDS 40.0%
! GCTACTATCATTGTGGGTTT+TGG + chr7_3:78635524-78635543 Msa1127140:CDS 40.0%
!! TATCATTGTGGGTTTTGGCA+AGG + chr7_3:78635529-78635548 Msa1127140:CDS 40.0%
TGTGAGTAGGGTTTAGTAGT+TGG + chr7_3:78636294-78636313 Msa1127140:intron 40.0%
TCAACAATTGCAAGAACCAG+TGG + chr7_3:78636930-78636949 Msa1127140:CDS 40.0%
AACAGTCATGTGACGACAAT+AGG - chr7_3:78637108-78637127 None:intergenic 40.0%
GCTTTGGTCCTATCTATCAT+TGG + chr7_3:78637128-78637147 Msa1127140:CDS 40.0%
CAGTGGAACCAATGATAGAT+AGG - chr7_3:78637139-78637158 None:intergenic 40.0%
CACAAGTAAAAGGAAGACAG+TGG - chr7_3:78637156-78637175 None:intergenic 40.0%
! CACTGTCTTCCTTTTACTTG+TGG + chr7_3:78637154-78637173 Msa1127140:CDS 40.0%
GGAGGTTGGAAATGCATTCA+AGG - chr7_3:78635237-78635256 None:intergenic 45.0%
GAGTGAATGAGAGTAAGGTG+GGG - chr7_3:78635258-78635277 None:intergenic 45.0%
CATCCACACTTGTCTTTGAC+TGG - chr7_3:78635409-78635428 None:intergenic 45.0%
CAGTCAAAGACAAGTGTGGA+TGG + chr7_3:78635407-78635426 Msa1127140:CDS 45.0%
TCACAGCGATGTGAAGGTTA+TGG + chr7_3:78635433-78635452 Msa1127140:CDS 45.0%
!! GATGTGTTGCTTAGGGTTCT+TGG + chr7_3:78635482-78635501 Msa1127140:CDS 45.0%
GCATTACTCTTCTCAGCCAA+TGG + chr7_3:78637002-78637021 Msa1127140:CDS 45.0%
! TCGTCACATGACTGTTGCTT+TGG + chr7_3:78637112-78637131 Msa1127140:CDS 45.0%
GAGAGTGAGCCACAAGTAAA+AGG - chr7_3:78637166-78637185 None:intergenic 45.0%
GGAGGTTGGAAATGCATTCA+AGG - chr7_3:78635237-78635256 None:intergenic 45.0%
GAGTGAATGAGAGTAAGGTG+GGG - chr7_3:78635258-78635277 None:intergenic 45.0%
CATCCACACTTGTCTTTGAC+TGG - chr7_3:78635409-78635428 None:intergenic 45.0%
CAGTCAAAGACAAGTGTGGA+TGG + chr7_3:78635407-78635426 Msa1127140:CDS 45.0%
TCACAGCGATGTGAAGGTTA+TGG + chr7_3:78635433-78635452 Msa1127140:CDS 45.0%
!! GATGTGTTGCTTAGGGTTCT+TGG + chr7_3:78635482-78635501 Msa1127140:CDS 45.0%
GCATTACTCTTCTCAGCCAA+TGG + chr7_3:78637002-78637021 Msa1127140:CDS 45.0%
! TCGTCACATGACTGTTGCTT+TGG + chr7_3:78637112-78637131 Msa1127140:CDS 45.0%
GAGAGTGAGCCACAAGTAAA+AGG - chr7_3:78637166-78637185 None:intergenic 45.0%
!!! ATATTTTTCAAAAAAAAAAA+CGG + chr7_3:78636173-78636192 Msa1127140:intron 5.0%
!!! ATATTTTTCAAAAAAAAAAA+CGG + chr7_3:78636173-78636192 Msa1127140:intron 5.0%
TGAATGAGAGTAAGGTGGGG+AGG - chr7_3:78635255-78635274 None:intergenic 50.0%
TGGAGTTCACAGCGATGTGA+AGG + chr7_3:78635427-78635446 Msa1127140:CDS 50.0%
!! GGGTTTTGGCAAGGAGACTA+AGG + chr7_3:78635538-78635557 Msa1127140:CDS 50.0%
GTAGCTCCTTCCTCCCTATT+TGG + chr7_3:78636601-78636620 Msa1127140:intron 50.0%
!! GTGGGAGTGTTAGGACAGAA+AGG + chr7_3:78637038-78637057 Msa1127140:CDS 50.0%
AAGGAAACTCGCACGTGCAA+TGG + chr7_3:78637057-78637076 Msa1127140:CDS 50.0%
TGAATGAGAGTAAGGTGGGG+AGG - chr7_3:78635255-78635274 None:intergenic 50.0%
TGGAGTTCACAGCGATGTGA+AGG + chr7_3:78635427-78635446 Msa1127140:CDS 50.0%
!! GGGTTTTGGCAAGGAGACTA+AGG + chr7_3:78635538-78635557 Msa1127140:CDS 50.0%
GTAGCTCCTTCCTCCCTATT+TGG + chr7_3:78636601-78636620 Msa1127140:intron 50.0%
!! GTGGGAGTGTTAGGACAGAA+AGG + chr7_3:78637038-78637057 Msa1127140:CDS 50.0%
AAGGAAACTCGCACGTGCAA+TGG + chr7_3:78637057-78637076 Msa1127140:CDS 50.0%
TGAGAGTAAGGTGGGGAGGT+TGG - chr7_3:78635251-78635270 None:intergenic 55.0%
TTCTCAGCCAATGGAGCTGC+TGG + chr7_3:78637011-78637030 Msa1127140:CDS 55.0%
AATGGAGCTGCTGGTGCAGT+GGG + chr7_3:78637020-78637039 Msa1127140:CDS 55.0%
TGAGAGTAAGGTGGGGAGGT+TGG - chr7_3:78635251-78635270 None:intergenic 55.0%
TTCTCAGCCAATGGAGCTGC+TGG + chr7_3:78637011-78637030 Msa1127140:CDS 55.0%
AATGGAGCTGCTGGTGCAGT+GGG + chr7_3:78637020-78637039 Msa1127140:CDS 55.0%
CACTGCACCAGCAGCTCCAT+TGG - chr7_3:78637021-78637040 None:intergenic 60.0%
CAATGGAGCTGCTGGTGCAG+TGG + chr7_3:78637019-78637038 Msa1127140:CDS 60.0%
!! GCTGGTGCAGTGGGAGTGTT+AGG + chr7_3:78637029-78637048 Msa1127140:CDS 60.0%
CACTGCACCAGCAGCTCCAT+TGG - chr7_3:78637021-78637040 None:intergenic 60.0%
CAATGGAGCTGCTGGTGCAG+TGG + chr7_3:78637019-78637038 Msa1127140:CDS 60.0%
!! GCTGGTGCAGTGGGAGTGTT+AGG + chr7_3:78637029-78637048 Msa1127140:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78635209 78637454 78635209 ID=Msa1127140;Name=Msa1127140
chr7_3 mRNA 78635209 78637454 78635209 ID=Msa1127140-mRNA-1;Parent=Msa1127140;Name=Msa1127140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=189|1|1|1|1|1|2|237|190
chr7_3 exon 78635209 78635624 78635209 ID=Msa1127140-mRNA-1:exon:22036;Parent=Msa1127140-mRNA-1
chr7_3 exon 78636872 78637454 78636872 ID=Msa1127140-mRNA-1:exon:22037;Parent=Msa1127140-mRNA-1
chr7_3 five_prime_UTR 78635209 78635397 78635209 ID=Msa1127140-mRNA-1:five_prime_utr;Parent=Msa1127140-mRNA-1
chr7_3 CDS 78635398 78635624 78635398 ID=Msa1127140-mRNA-1:cds;Parent=Msa1127140-mRNA-1
chr7_3 CDS 78636872 78637217 78636872 ID=Msa1127140-mRNA-1:cds;Parent=Msa1127140-mRNA-1
chr7_3 three_prime_UTR 78637218 78637454 78637218 ID=Msa1127140-mRNA-1:three_prime_utr;Parent=Msa1127140-mRNA-1
Gene Sequence

>Msa1127140

ATGGGAAACCAGTCAAAGACAAGTGTGGATGGAGTTCACAGCGATGTGAAGGTTATGGAGATGAGAACTAGAAGTAGTGTTTATGATGTGTTGCTTAGGGTTCTTGGTTTCTTGCTTACTCTCACTGCTACTATCATTGTGGGTTTTGGCAAGGAGACTAAGGTCATTTCATATGCTTCATTGCAATTCAAAGCTACTGCTAAGTGGGAATATATGTCTGCTATTGTGTTTTTCTTGGTGACAAATGCTATAGGATGTTCATATGCTGCAATTTCTATGGTGATTTCAACAATTGCAAGAACCAGTGGAAATAAAACAGCACTATTGATGATATCAATGCTAGACCTAGTTATAATGGCATTACTCTTCTCAGCCAATGGAGCTGCTGGTGCAGTGGGAGTGTTAGGACAGAAAGGAAACTCGCACGTGCAATGGATGAAAGTGTGCAATGTATTTGATGCCTATTGTCGTCACATGACTGTTGCTTTGGTCCTATCTATCATTGGTTCCACTGTCTTCCTTTTACTTGTGGCTCACTCTCTTTTCAAACTCCATTATTATAGATCAAACTAG

Protein sequence

>Msa1127140

MGNQSKTSVDGVHSDVKVMEMRTRSSVYDVLLRVLGFLLTLTATIIVGFGKETKVISYASLQFKATAKWEYMSAIVFFLVTNAIGCSYAAISMVISTIARTSGNKTALLMISMLDLVIMALLFSANGAAGAVGVLGQKGNSHVQWMKVCNVFDAYCRHMTVALVLSIIGSTVFLLLVAHSLFKLHYYRSN*