Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185230 | sp|Q66GI4|PRRP1_ARATH | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.16e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185230 | A0A2Z6LTV0 | 86.667 | 60 | 8 | 0 | 59 | 118 | 331 | 390 | 4.29e-27 | 113 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185230 | Msa1185240 | 0.971397 | 4.243831e-133 | -8.615850e-47 |
| Msa1185230 | Msa1185250 | 0.816892 | 4.374420e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185230 | MtrunA17_Chr2g0331251 | 78.788 | 66 | 14 | 0 | 53 | 118 | 325 | 390 | 3.81e-29 | 109 |
| Msa1185230 | MtrunA17_Chr8g0357041 | 54.237 | 59 | 27 | 0 | 59 | 117 | 275 | 333 | 3.55e-16 | 73.2 |
| Msa1185230 | MtrunA17_Chr8g0390401 | 45.455 | 66 | 36 | 0 | 52 | 117 | 447 | 512 | 8.86e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185230 | AT2G32230.2 | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.28e-20 | 84.0 |
| Msa1185230 | AT2G32230.1 | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.28e-20 | 84.0 |
Find 20 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGGCATCATTGTCTAAAT+TGG | 0.142427 | 8_1:-22104758 | Msa1185230:CDS |
| ATGTATGATGTTGTTGTTTA+TGG | 0.198942 | 8_1:-22104473 | Msa1185230:CDS |
| CAGCTGTAAACAGGTGATTA+TGG | 0.287348 | 8_1:-22104419 | Msa1185230:three_prime_UTR |
| TTATAGGACTTTGTTATGAT+TGG | 0.326524 | 8_1:-22104892 | Msa1185230:intron |
| CGCGACACGCCTAATCTTAG+AGG | 0.344102 | 8_1:+22104355 | None:intergenic |
| ATCTCTTCTGTGTTACTCTC+AGG | 0.382840 | 8_1:-22105885 | Msa1185230:intron |
| AGCTGATTTCAGCTGTAAAC+AGG | 0.418900 | 8_1:-22104428 | Msa1185230:exon |
| CAGAAGTGGCTTGAGAAGAA+TGG | 0.454597 | 8_1:-22104497 | Msa1185230:CDS |
| TCATTCTCGCCGCCGTTCAC+AGG | 0.475453 | 8_1:-22105560 | Msa1185230:intron |
| AAATGATCGAAGTTTGCCTT+AGG | 0.492571 | 8_1:+22104721 | None:intergenic |
| GTTGTTTATGGAGCAAATGT+AGG | 0.518443 | 8_1:-22104461 | Msa1185230:CDS |
| TGTTTACAGCTGAAATCAGC+TGG | 0.533665 | 8_1:+22104430 | None:intergenic |
| CCATGGACACCTCTAAGATT+AGG | 0.547202 | 8_1:-22104364 | Msa1185230:three_prime_UTR |
| AAAAGAGACTGAAAACTTCG+CGG | 0.550959 | 8_1:-22104776 | Msa1185230:CDS |
| CCTAATCTTAGAGGTGTCCA+TGG | 0.574869 | 8_1:+22104364 | None:intergenic |
| CAATGCTCATGAGCTTCTCA+AGG | 0.603399 | 8_1:+22104809 | None:intergenic |
| CTCTAAGATTAGGCGTGTCG+CGG | 0.606492 | 8_1:-22104354 | Msa1185230:three_prime_UTR |
| CAAAAGCAGTTACCTGTGAA+CGG | 0.629108 | 8_1:+22105548 | None:intergenic |
| TCATAACAGTCTATAAACCA+TGG | 0.635600 | 8_1:-22104381 | Msa1185230:three_prime_UTR |
| AAGCAGTTACCTGTGAACGG+CGG | 0.765283 | 8_1:+22105551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACATAAGTTTTTATAATA+TGG | + | chr8_1:22104882-22104901 | None:intergenic | 10.0% |
| !! | GATTTATTTATGTAATTTAT+AGG | - | chr8_1:22105340-22105359 | Msa1185230:intron | 10.0% |
| !!! | TAACATAAGTTTTTATAATA+TGG | + | chr8_1:22104882-22104901 | None:intergenic | 10.0% |
| !! | GATTTATTTATGTAATTTAT+AGG | - | chr8_1:22105340-22105359 | Msa1185230:intron | 10.0% |
| !!! | TACAAAATTTTGATTTGTTT+AGG | - | chr8_1:22104780-22104799 | Msa1185230:CDS | 15.0% |
| !! | AAAAATACTAACATAAATTG+TGG | + | chr8_1:22104826-22104845 | None:intergenic | 15.0% |
| !!! | TACAAAATTTTGATTTGTTT+AGG | - | chr8_1:22104780-22104799 | Msa1185230:CDS | 15.0% |
| !! | AAAAATACTAACATAAATTG+TGG | + | chr8_1:22104826-22104845 | None:intergenic | 15.0% |
| !!! | TTCAATTGTATTTGATTTCT+AGG | - | chr8_1:22104422-22104441 | Msa1185230:three_prime_UTR | 20.0% |
| !!! | TAAGTTTTTATAATATGGTG+AGG | + | chr8_1:22104877-22104896 | None:intergenic | 20.0% |
| !! | AACTTATGTTAGTATGAAAT+TGG | - | chr8_1:22104891-22104910 | Msa1185230:intron | 20.0% |
| !! | GATAAATTAGTATAATCAAG+TGG | - | chr8_1:22105232-22105251 | Msa1185230:intron | 20.0% |
| !! | ATAAATATTACTATAGGCAT+AGG | - | chr8_1:22105703-22105722 | Msa1185230:intron | 20.0% |
| !!! | TTCAATTGTATTTGATTTCT+AGG | - | chr8_1:22104422-22104441 | Msa1185230:three_prime_UTR | 20.0% |
| !!! | TAAGTTTTTATAATATGGTG+AGG | + | chr8_1:22104877-22104896 | None:intergenic | 20.0% |
| !! | AACTTATGTTAGTATGAAAT+TGG | - | chr8_1:22104891-22104910 | Msa1185230:intron | 20.0% |
| !! | GATAAATTAGTATAATCAAG+TGG | - | chr8_1:22105232-22105251 | Msa1185230:intron | 20.0% |
| !! | ATAAATATTACTATAGGCAT+AGG | - | chr8_1:22105703-22105722 | Msa1185230:intron | 20.0% |
| !! | TCAAACTCAATTTGAAATGT+TGG | + | chr8_1:22104941-22104960 | None:intergenic | 25.0% |
| ! | CAAACTAGTTACAATTAAAG+GGG | + | chr8_1:22104984-22105003 | None:intergenic | 25.0% |
| ! | CCAAACTAGTTACAATTAAA+GGG | + | chr8_1:22104985-22105004 | None:intergenic | 25.0% |
| ! | TCCAAACTAGTTACAATTAA+AGG | + | chr8_1:22104986-22105005 | None:intergenic | 25.0% |
| ! | TTCTAACCACATTATTTGAA+TGG | + | chr8_1:22105032-22105051 | None:intergenic | 25.0% |
| ! | AGTGGCTATAATTATACATT+TGG | - | chr8_1:22105250-22105269 | Msa1185230:intron | 25.0% |
| !! | TTATAGGACTTTGTTATGAT+TGG | - | chr8_1:22105356-22105375 | Msa1185230:intron | 25.0% |
| ! | ACAAAAAATACATTCTGTCT+CGG | + | chr8_1:22105418-22105437 | None:intergenic | 25.0% |
| ! | TTTAATAACACAGTGAAGAT+TGG | + | chr8_1:22105562-22105581 | None:intergenic | 25.0% |
| !! | TTAAAAGCTGAATTTTGTGA+TGG | - | chr8_1:22105599-22105618 | Msa1185230:CDS | 25.0% |
| ! | AAAGCATAGCTATTATACAA+AGG | + | chr8_1:22105649-22105668 | None:intergenic | 25.0% |
| !!! | ATGTATGATGTTGTTGTTTA+TGG | - | chr8_1:22105775-22105794 | Msa1185230:intron | 25.0% |
| !! | TCAAACTCAATTTGAAATGT+TGG | + | chr8_1:22104941-22104960 | None:intergenic | 25.0% |
| ! | CAAACTAGTTACAATTAAAG+GGG | + | chr8_1:22104984-22105003 | None:intergenic | 25.0% |
| ! | CCAAACTAGTTACAATTAAA+GGG | + | chr8_1:22104985-22105004 | None:intergenic | 25.0% |
| ! | TCCAAACTAGTTACAATTAA+AGG | + | chr8_1:22104986-22105005 | None:intergenic | 25.0% |
| ! | TTCTAACCACATTATTTGAA+TGG | + | chr8_1:22105032-22105051 | None:intergenic | 25.0% |
| ! | AGTGGCTATAATTATACATT+TGG | - | chr8_1:22105250-22105269 | Msa1185230:intron | 25.0% |
| !! | TTATAGGACTTTGTTATGAT+TGG | - | chr8_1:22105356-22105375 | Msa1185230:intron | 25.0% |
| ! | ACAAAAAATACATTCTGTCT+CGG | + | chr8_1:22105418-22105437 | None:intergenic | 25.0% |
| ! | TTTAATAACACAGTGAAGAT+TGG | + | chr8_1:22105562-22105581 | None:intergenic | 25.0% |
| !! | TTAAAAGCTGAATTTTGTGA+TGG | - | chr8_1:22105599-22105618 | Msa1185230:CDS | 25.0% |
| ! | AAAGCATAGCTATTATACAA+AGG | + | chr8_1:22105649-22105668 | None:intergenic | 25.0% |
| !!! | ATGTATGATGTTGTTGTTTA+TGG | - | chr8_1:22105775-22105794 | Msa1185230:intron | 25.0% |
| TCATATGCAATCACAGTAAA+GGG | + | chr8_1:22104478-22104497 | None:intergenic | 30.0% | |
| TTCATATGCAATCACAGTAA+AGG | + | chr8_1:22104479-22104498 | None:intergenic | 30.0% | |
| TGTGATTGCATATGAATTCT+AGG | - | chr8_1:22104483-22104502 | Msa1185230:CDS | 30.0% | |
| ACAGAATTAAGAAATGGTTG+AGG | + | chr8_1:22104531-22104550 | None:intergenic | 30.0% | |
| TCAACCATTTCTTAATTCTG+TGG | - | chr8_1:22104530-22104549 | Msa1185230:intron | 30.0% | |
| !! | ATAATGGTGAGTTGATTCTT+TGG | - | chr8_1:22104613-22104632 | Msa1185230:intron | 30.0% |
| ! | CTTTGGTAATTTATCACACT+AGG | - | chr8_1:22104630-22104649 | Msa1185230:intron | 30.0% |
| CCCTTTAATTGTAACTAGTT+TGG | - | chr8_1:22104982-22105001 | Msa1185230:intron | 30.0% | |
| CTCTAACCATTCAAATAATG+TGG | - | chr8_1:22105023-22105042 | Msa1185230:intron | 30.0% | |
| TCTATATGACATAGTAATGC+TGG | - | chr8_1:22105091-22105110 | Msa1185230:intron | 30.0% | |
| TTCAAGAAATTGTCTTCAGT+TGG | - | chr8_1:22105667-22105686 | Msa1185230:intron | 30.0% | |
| !! | ATGTTTAACTTTTGCAGAAG+TGG | - | chr8_1:22105737-22105756 | Msa1185230:intron | 30.0% |
| TCATAACAGTCTATAAACCA+TGG | - | chr8_1:22105867-22105886 | Msa1185230:intron | 30.0% | |
| TCATATGCAATCACAGTAAA+GGG | + | chr8_1:22104478-22104497 | None:intergenic | 30.0% | |
| TTCATATGCAATCACAGTAA+AGG | + | chr8_1:22104479-22104498 | None:intergenic | 30.0% | |
| TGTGATTGCATATGAATTCT+AGG | - | chr8_1:22104483-22104502 | Msa1185230:CDS | 30.0% | |
| ACAGAATTAAGAAATGGTTG+AGG | + | chr8_1:22104531-22104550 | None:intergenic | 30.0% | |
| TCAACCATTTCTTAATTCTG+TGG | - | chr8_1:22104530-22104549 | Msa1185230:intron | 30.0% | |
| !! | ATAATGGTGAGTTGATTCTT+TGG | - | chr8_1:22104613-22104632 | Msa1185230:intron | 30.0% |
| ! | CTTTGGTAATTTATCACACT+AGG | - | chr8_1:22104630-22104649 | Msa1185230:intron | 30.0% |
| CCCTTTAATTGTAACTAGTT+TGG | - | chr8_1:22104982-22105001 | Msa1185230:intron | 30.0% | |
| CTCTAACCATTCAAATAATG+TGG | - | chr8_1:22105023-22105042 | Msa1185230:intron | 30.0% | |
| TCTATATGACATAGTAATGC+TGG | - | chr8_1:22105091-22105110 | Msa1185230:intron | 30.0% | |
| TTCAAGAAATTGTCTTCAGT+TGG | - | chr8_1:22105667-22105686 | Msa1185230:intron | 30.0% | |
| !! | ATGTTTAACTTTTGCAGAAG+TGG | - | chr8_1:22105737-22105756 | Msa1185230:intron | 30.0% |
| TCATAACAGTCTATAAACCA+TGG | - | chr8_1:22105867-22105886 | Msa1185230:intron | 30.0% | |
| CATATGCAATCACAGTAAAG+GGG | + | chr8_1:22104477-22104496 | None:intergenic | 35.0% | |
| CATTTCTTAATTCTGTGGCT+GGG | - | chr8_1:22104535-22104554 | Msa1185230:intron | 35.0% | |
| ATTTCTTAATTCTGTGGCTG+GGG | - | chr8_1:22104536-22104555 | Msa1185230:intron | 35.0% | |
| AGTCTGTTGCTGAAACATAA+TGG | - | chr8_1:22104597-22104616 | Msa1185230:intron | 35.0% | |
| AGAGTCATATGCTTAAGATG+TGG | - | chr8_1:22105061-22105080 | Msa1185230:intron | 35.0% | |
| TTGTAAACTAACCCATGCAA+AGG | + | chr8_1:22105152-22105171 | None:intergenic | 35.0% | |
| ATCCATATGCATCACACATA+AGG | + | chr8_1:22105309-22105328 | None:intergenic | 35.0% | |
| TGCATATGGATTTCAAACTG+TGG | - | chr8_1:22105318-22105337 | Msa1185230:intron | 35.0% | |
| AAAAGAGACTGAAAACTTCG+CGG | - | chr8_1:22105472-22105491 | Msa1185230:intron | 35.0% | |
| ! | AGTTTGCCTTAGGATGTTTT+TGG | + | chr8_1:22105520-22105539 | None:intergenic | 35.0% |
| AAATGATCGAAGTTTGCCTT+AGG | + | chr8_1:22105530-22105549 | None:intergenic | 35.0% | |
| GTTGTTTATGGAGCAAATGT+AGG | - | chr8_1:22105787-22105806 | Msa1185230:intron | 35.0% | |
| CATATGCAATCACAGTAAAG+GGG | + | chr8_1:22104477-22104496 | None:intergenic | 35.0% | |
| CATTTCTTAATTCTGTGGCT+GGG | - | chr8_1:22104535-22104554 | Msa1185230:intron | 35.0% | |
| ATTTCTTAATTCTGTGGCTG+GGG | - | chr8_1:22104536-22104555 | Msa1185230:intron | 35.0% | |
| AGTCTGTTGCTGAAACATAA+TGG | - | chr8_1:22104597-22104616 | Msa1185230:intron | 35.0% | |
| AGAGTCATATGCTTAAGATG+TGG | - | chr8_1:22105061-22105080 | Msa1185230:intron | 35.0% | |
| TTGTAAACTAACCCATGCAA+AGG | + | chr8_1:22105152-22105171 | None:intergenic | 35.0% | |
| ATCCATATGCATCACACATA+AGG | + | chr8_1:22105309-22105328 | None:intergenic | 35.0% | |
| TGCATATGGATTTCAAACTG+TGG | - | chr8_1:22105318-22105337 | Msa1185230:intron | 35.0% | |
| AAAAGAGACTGAAAACTTCG+CGG | - | chr8_1:22105472-22105491 | Msa1185230:intron | 35.0% | |
| ! | AGTTTGCCTTAGGATGTTTT+TGG | + | chr8_1:22105520-22105539 | None:intergenic | 35.0% |
| AAATGATCGAAGTTTGCCTT+AGG | + | chr8_1:22105530-22105549 | None:intergenic | 35.0% | |
| GTTGTTTATGGAGCAAATGT+AGG | - | chr8_1:22105787-22105806 | Msa1185230:intron | 35.0% | |
| ! | ATCTCTTCTGTGTTACTCTC+AGG | - | chr8_1:22104363-22104382 | Msa1185230:three_prime_UTR | 40.0% |
| CACAGTAAAGGGGAATTCAA+CGG | + | chr8_1:22104467-22104486 | None:intergenic | 40.0% | |
| CCAGCCACAGAATTAAGAAA+TGG | + | chr8_1:22104537-22104556 | None:intergenic | 40.0% | |
| CCATTTCTTAATTCTGTGGC+TGG | - | chr8_1:22104534-22104553 | Msa1185230:intron | 40.0% | |
| CAAAAGCAGTTACCTGTGAA+CGG | + | chr8_1:22104703-22104722 | None:intergenic | 40.0% | |
| AGTCATCTTGAACCTTTGCA+TGG | - | chr8_1:22105137-22105156 | Msa1185230:intron | 40.0% | |
| GTCATCTTGAACCTTTGCAT+GGG | - | chr8_1:22105138-22105157 | Msa1185230:intron | 40.0% | |
| TGCCTTATGTGTGATGCATA+TGG | - | chr8_1:22105304-22105323 | Msa1185230:intron | 40.0% | |
| ! | GCGAAGTTTTCAGTCTCTTT+TGG | + | chr8_1:22105473-22105492 | None:intergenic | 40.0% |
| ! | GGCAAACTTCGATCATTTTC+AGG | - | chr8_1:22105532-22105551 | Msa1185230:intron | 40.0% |
| TGTTTACAGCTGAAATCAGC+TGG | + | chr8_1:22105821-22105840 | None:intergenic | 40.0% | |
| ! | AGCTGATTTCAGCTGTAAAC+AGG | - | chr8_1:22105820-22105839 | Msa1185230:intron | 40.0% |
| CAGCTGTAAACAGGTGATTA+TGG | - | chr8_1:22105829-22105848 | Msa1185230:intron | 40.0% | |
| ! | ATCTCTTCTGTGTTACTCTC+AGG | - | chr8_1:22104363-22104382 | Msa1185230:three_prime_UTR | 40.0% |
| CACAGTAAAGGGGAATTCAA+CGG | + | chr8_1:22104467-22104486 | None:intergenic | 40.0% | |
| CCAGCCACAGAATTAAGAAA+TGG | + | chr8_1:22104537-22104556 | None:intergenic | 40.0% | |
| CCATTTCTTAATTCTGTGGC+TGG | - | chr8_1:22104534-22104553 | Msa1185230:intron | 40.0% | |
| CAAAAGCAGTTACCTGTGAA+CGG | + | chr8_1:22104703-22104722 | None:intergenic | 40.0% | |
| AGTCATCTTGAACCTTTGCA+TGG | - | chr8_1:22105137-22105156 | Msa1185230:intron | 40.0% | |
| GTCATCTTGAACCTTTGCAT+GGG | - | chr8_1:22105138-22105157 | Msa1185230:intron | 40.0% | |
| TGCCTTATGTGTGATGCATA+TGG | - | chr8_1:22105304-22105323 | Msa1185230:intron | 40.0% | |
| ! | GCGAAGTTTTCAGTCTCTTT+TGG | + | chr8_1:22105473-22105492 | None:intergenic | 40.0% |
| ! | GGCAAACTTCGATCATTTTC+AGG | - | chr8_1:22105532-22105551 | Msa1185230:intron | 40.0% |
| TGTTTACAGCTGAAATCAGC+TGG | + | chr8_1:22105821-22105840 | None:intergenic | 40.0% | |
| ! | AGCTGATTTCAGCTGTAAAC+AGG | - | chr8_1:22105820-22105839 | Msa1185230:intron | 40.0% |
| CAGCTGTAAACAGGTGATTA+TGG | - | chr8_1:22105829-22105848 | Msa1185230:intron | 40.0% | |
| CAATGCTCATGAGCTTCTCA+AGG | + | chr8_1:22105442-22105461 | None:intergenic | 45.0% | |
| CGCGGCATCATTGTCTAAAT+TGG | - | chr8_1:22105490-22105509 | Msa1185230:intron | 45.0% | |
| GGCTTGCCAAAAACATCCTA+AGG | - | chr8_1:22105511-22105530 | Msa1185230:intron | 45.0% | |
| CAGAAGTGGCTTGAGAAGAA+TGG | - | chr8_1:22105751-22105770 | Msa1185230:intron | 45.0% | |
| !! | CCTAATCTTAGAGGTGTCCA+TGG | + | chr8_1:22105887-22105906 | None:intergenic | 45.0% |
| !! | CCATGGACACCTCTAAGATT+AGG | - | chr8_1:22105884-22105903 | Msa1185230:intron | 45.0% |
| CAATGCTCATGAGCTTCTCA+AGG | + | chr8_1:22105442-22105461 | None:intergenic | 45.0% | |
| CGCGGCATCATTGTCTAAAT+TGG | - | chr8_1:22105490-22105509 | Msa1185230:intron | 45.0% | |
| GGCTTGCCAAAAACATCCTA+AGG | - | chr8_1:22105511-22105530 | Msa1185230:intron | 45.0% | |
| CAGAAGTGGCTTGAGAAGAA+TGG | - | chr8_1:22105751-22105770 | Msa1185230:intron | 45.0% | |
| !! | CCTAATCTTAGAGGTGTCCA+TGG | + | chr8_1:22105887-22105906 | None:intergenic | 45.0% |
| !! | CCATGGACACCTCTAAGATT+AGG | - | chr8_1:22105884-22105903 | Msa1185230:intron | 45.0% |
| !! | TAATATATAAATATTACTAT+AGG | - | chr8_1:22105697-22105716 | Msa1185230:intron | 5.0% |
| !! | TAATATATAAATATTACTAT+AGG | - | chr8_1:22105697-22105716 | Msa1185230:intron | 5.0% |
| AAGCAGTTACCTGTGAACGG+CGG | + | chr8_1:22104700-22104719 | None:intergenic | 50.0% | |
| !! | CTCTAAGATTAGGCGTGTCG+CGG | - | chr8_1:22105894-22105913 | Msa1185230:CDS | 50.0% |
| AAGCAGTTACCTGTGAACGG+CGG | + | chr8_1:22104700-22104719 | None:intergenic | 50.0% | |
| !! | CTCTAAGATTAGGCGTGTCG+CGG | - | chr8_1:22105894-22105913 | Msa1185230:CDS | 50.0% |
| CGCGACACGCCTAATCTTAG+AGG | + | chr8_1:22105896-22105915 | None:intergenic | 55.0% | |
| CGCGACACGCCTAATCTTAG+AGG | + | chr8_1:22105896-22105915 | None:intergenic | 55.0% | |
| TCATTCTCGCCGCCGTTCAC+AGG | - | chr8_1:22104688-22104707 | Msa1185230:intron | 60.0% | |
| TCATTCTCGCCGCCGTTCAC+AGG | - | chr8_1:22104688-22104707 | Msa1185230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 22104344 | 22105926 | 22104344 | ID=Msa1185230;Name=Msa1185230 |
| chr8_1 | mRNA | 22104344 | 22105926 | 22104344 | ID=Msa1185230-mRNA-1;Parent=Msa1185230;Name=Msa1185230-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.33|0.25|0.5|1|0.75|4|101|120 |
| chr8_1 | exon | 22104344 | 22104516 | 22104344 | ID=Msa1185230-mRNA-1:exon:8210;Parent=Msa1185230-mRNA-1 |
| chr8_1 | exon | 22104717 | 22104908 | 22104717 | ID=Msa1185230-mRNA-1:exon:8209;Parent=Msa1185230-mRNA-1 |
| chr8_1 | exon | 22105561 | 22105618 | 22105561 | ID=Msa1185230-mRNA-1:exon:8208;Parent=Msa1185230-mRNA-1 |
| chr8_1 | exon | 22105886 | 22105926 | 22105886 | ID=Msa1185230-mRNA-1:exon:8207;Parent=Msa1185230-mRNA-1 |
| chr8_1 | CDS | 22105886 | 22105926 | 22105886 | ID=Msa1185230-mRNA-1:cds;Parent=Msa1185230-mRNA-1 |
| chr8_1 | CDS | 22105561 | 22105618 | 22105561 | ID=Msa1185230-mRNA-1:cds;Parent=Msa1185230-mRNA-1 |
| chr8_1 | CDS | 22104717 | 22104908 | 22104717 | ID=Msa1185230-mRNA-1:cds;Parent=Msa1185230-mRNA-1 |
| chr8_1 | CDS | 22104445 | 22104516 | 22104445 | ID=Msa1185230-mRNA-1:cds;Parent=Msa1185230-mRNA-1 |
| chr8_1 | three_prime_UTR | 22104344 | 22104444 | 22104344 | ID=Msa1185230-mRNA-1:three_prime_utr;Parent=Msa1185230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
