Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185250 | GAU10961.1 | 86.667 | 60 | 8 | 0 | 59 | 118 | 331 | 390 | 8.99e-27 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185250 | sp|Q66GI4|PRRP1_ARATH | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.16e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185250 | A0A2Z6LTV0 | 86.667 | 60 | 8 | 0 | 59 | 118 | 331 | 390 | 4.29e-27 | 113 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009420 | Msa1185250 | 0.828927 | 6.846119e-55 | -8.615850e-47 |
| Msa1054810 | Msa1185250 | 0.841469 | 4.662206e-58 | -8.615850e-47 |
| Msa1185230 | Msa1185250 | 0.816892 | 4.374420e-52 | -8.615850e-47 |
| Msa1185240 | Msa1185250 | 0.869809 | 2.343638e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185250 | MtrunA17_Chr2g0331251 | 78.788 | 66 | 14 | 0 | 53 | 118 | 325 | 390 | 3.81e-29 | 109 |
| Msa1185250 | MtrunA17_Chr8g0357041 | 54.237 | 59 | 27 | 0 | 59 | 117 | 275 | 333 | 3.55e-16 | 73.2 |
| Msa1185250 | MtrunA17_Chr8g0390401 | 45.455 | 66 | 36 | 0 | 52 | 117 | 447 | 512 | 8.86e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185250 | AT2G32230.2 | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.28e-20 | 84.0 |
| Msa1185250 | AT2G32230.1 | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.28e-20 | 84.0 |
Find 20 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGGCATCATTGTCTAAAT+TGG | 0.142427 | 8_1:-22192181 | Msa1185250:CDS |
| ATGTATGATGTTGTTGTTTA+TGG | 0.198942 | 8_1:-22191896 | Msa1185250:CDS |
| CAGCTGTAAACAGGTGATTA+TGG | 0.287348 | 8_1:-22191842 | Msa1185250:three_prime_UTR |
| TTATAGGACTTTGTTATGAT+TGG | 0.326524 | 8_1:-22192315 | Msa1185250:intron |
| CGCGACACGCCTAATCTTAG+AGG | 0.344102 | 8_1:+22191778 | None:intergenic |
| ATCTCTTCTGTGTTACTCTC+AGG | 0.382840 | 8_1:-22193308 | Msa1185250:intron |
| AGCTGATTTCAGCTGTAAAC+AGG | 0.418900 | 8_1:-22191851 | Msa1185250:exon |
| CAGAAGTGGCTTGAGAAGAA+TGG | 0.454597 | 8_1:-22191920 | Msa1185250:CDS |
| TCATTCTCGCCGCCGTTCAC+AGG | 0.475453 | 8_1:-22192983 | Msa1185250:intron |
| AAATGATCGAAGTTTGCCTT+AGG | 0.492571 | 8_1:+22192144 | None:intergenic |
| GTTGTTTATGGAGCAAATGT+AGG | 0.518443 | 8_1:-22191884 | Msa1185250:CDS |
| TGTTTACAGCTGAAATCAGC+TGG | 0.533665 | 8_1:+22191853 | None:intergenic |
| CCATGGACACCTCTAAGATT+AGG | 0.547202 | 8_1:-22191787 | Msa1185250:three_prime_UTR |
| AAAAGAGACTGAAAACTTCG+CGG | 0.550959 | 8_1:-22192199 | Msa1185250:CDS |
| CCTAATCTTAGAGGTGTCCA+TGG | 0.574869 | 8_1:+22191787 | None:intergenic |
| CAATGCTCATGAGCTTCTCA+AGG | 0.603399 | 8_1:+22192232 | None:intergenic |
| CTCTAAGATTAGGCGTGTCG+CGG | 0.606492 | 8_1:-22191777 | Msa1185250:three_prime_UTR |
| CAAAAGCAGTTACCTGTGAA+CGG | 0.629108 | 8_1:+22192971 | None:intergenic |
| TCATAACAGTCTATAAACCA+TGG | 0.635600 | 8_1:-22191804 | Msa1185250:three_prime_UTR |
| AAGCAGTTACCTGTGAACGG+CGG | 0.765283 | 8_1:+22192974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACATAAGTTTTTATAATA+TGG | + | chr8_1:22192305-22192324 | None:intergenic | 10.0% |
| !! | GATTTATTTATGTAATTTAT+AGG | - | chr8_1:22192763-22192782 | Msa1185250:intron | 10.0% |
| !!! | TAACATAAGTTTTTATAATA+TGG | + | chr8_1:22192305-22192324 | None:intergenic | 10.0% |
| !! | GATTTATTTATGTAATTTAT+AGG | - | chr8_1:22192763-22192782 | Msa1185250:intron | 10.0% |
| !!! | TACAAAATTTTGATTTGTTT+AGG | - | chr8_1:22192203-22192222 | Msa1185250:CDS | 15.0% |
| !! | AAAAATACTAACATAAATTG+TGG | + | chr8_1:22192249-22192268 | None:intergenic | 15.0% |
| !!! | TACAAAATTTTGATTTGTTT+AGG | - | chr8_1:22192203-22192222 | Msa1185250:CDS | 15.0% |
| !! | AAAAATACTAACATAAATTG+TGG | + | chr8_1:22192249-22192268 | None:intergenic | 15.0% |
| !!! | TTCAATTGTATTTGATTTCT+AGG | - | chr8_1:22191845-22191864 | Msa1185250:three_prime_UTR | 20.0% |
| !!! | TAAGTTTTTATAATATGGTG+AGG | + | chr8_1:22192300-22192319 | None:intergenic | 20.0% |
| !! | AACTTATGTTAGTATGAAAT+TGG | - | chr8_1:22192314-22192333 | Msa1185250:intron | 20.0% |
| !! | GATAAATTAGTATAATCAAG+TGG | - | chr8_1:22192655-22192674 | Msa1185250:intron | 20.0% |
| !! | ATAAATATTACTATAGGCAT+AGG | - | chr8_1:22193126-22193145 | Msa1185250:intron | 20.0% |
| !!! | TTCAATTGTATTTGATTTCT+AGG | - | chr8_1:22191845-22191864 | Msa1185250:three_prime_UTR | 20.0% |
| !!! | TAAGTTTTTATAATATGGTG+AGG | + | chr8_1:22192300-22192319 | None:intergenic | 20.0% |
| !! | AACTTATGTTAGTATGAAAT+TGG | - | chr8_1:22192314-22192333 | Msa1185250:intron | 20.0% |
| !! | GATAAATTAGTATAATCAAG+TGG | - | chr8_1:22192655-22192674 | Msa1185250:intron | 20.0% |
| !! | ATAAATATTACTATAGGCAT+AGG | - | chr8_1:22193126-22193145 | Msa1185250:intron | 20.0% |
| !! | TCAAACTCAATTTGAAATGT+TGG | + | chr8_1:22192364-22192383 | None:intergenic | 25.0% |
| ! | CAAACTAGTTACAATTAAAG+GGG | + | chr8_1:22192407-22192426 | None:intergenic | 25.0% |
| ! | CCAAACTAGTTACAATTAAA+GGG | + | chr8_1:22192408-22192427 | None:intergenic | 25.0% |
| ! | TCCAAACTAGTTACAATTAA+AGG | + | chr8_1:22192409-22192428 | None:intergenic | 25.0% |
| ! | TTCTAACCACATTATTTGAA+TGG | + | chr8_1:22192455-22192474 | None:intergenic | 25.0% |
| ! | AGTGGCTATAATTATACATT+TGG | - | chr8_1:22192673-22192692 | Msa1185250:intron | 25.0% |
| !! | TTATAGGACTTTGTTATGAT+TGG | - | chr8_1:22192779-22192798 | Msa1185250:intron | 25.0% |
| ! | ACAAAAAATACATTCTGTCT+CGG | + | chr8_1:22192841-22192860 | None:intergenic | 25.0% |
| ! | TTTAATAACACAGTGAAGAT+TGG | + | chr8_1:22192985-22193004 | None:intergenic | 25.0% |
| !! | TTAAAAGCTGAATTTTGTGA+TGG | - | chr8_1:22193022-22193041 | Msa1185250:CDS | 25.0% |
| ! | AAAGCATAGCTATTATACAA+AGG | + | chr8_1:22193072-22193091 | None:intergenic | 25.0% |
| !!! | ATGTATGATGTTGTTGTTTA+TGG | - | chr8_1:22193198-22193217 | Msa1185250:intron | 25.0% |
| !! | TCAAACTCAATTTGAAATGT+TGG | + | chr8_1:22192364-22192383 | None:intergenic | 25.0% |
| ! | CAAACTAGTTACAATTAAAG+GGG | + | chr8_1:22192407-22192426 | None:intergenic | 25.0% |
| ! | CCAAACTAGTTACAATTAAA+GGG | + | chr8_1:22192408-22192427 | None:intergenic | 25.0% |
| ! | TCCAAACTAGTTACAATTAA+AGG | + | chr8_1:22192409-22192428 | None:intergenic | 25.0% |
| ! | TTCTAACCACATTATTTGAA+TGG | + | chr8_1:22192455-22192474 | None:intergenic | 25.0% |
| ! | AGTGGCTATAATTATACATT+TGG | - | chr8_1:22192673-22192692 | Msa1185250:intron | 25.0% |
| !! | TTATAGGACTTTGTTATGAT+TGG | - | chr8_1:22192779-22192798 | Msa1185250:intron | 25.0% |
| ! | ACAAAAAATACATTCTGTCT+CGG | + | chr8_1:22192841-22192860 | None:intergenic | 25.0% |
| ! | TTTAATAACACAGTGAAGAT+TGG | + | chr8_1:22192985-22193004 | None:intergenic | 25.0% |
| !! | TTAAAAGCTGAATTTTGTGA+TGG | - | chr8_1:22193022-22193041 | Msa1185250:CDS | 25.0% |
| ! | AAAGCATAGCTATTATACAA+AGG | + | chr8_1:22193072-22193091 | None:intergenic | 25.0% |
| !!! | ATGTATGATGTTGTTGTTTA+TGG | - | chr8_1:22193198-22193217 | Msa1185250:intron | 25.0% |
| TCATATGCAATCACAGTAAA+GGG | + | chr8_1:22191901-22191920 | None:intergenic | 30.0% | |
| TTCATATGCAATCACAGTAA+AGG | + | chr8_1:22191902-22191921 | None:intergenic | 30.0% | |
| TGTGATTGCATATGAATTCT+AGG | - | chr8_1:22191906-22191925 | Msa1185250:CDS | 30.0% | |
| ACAGAATTAAGAAATGGTTG+AGG | + | chr8_1:22191954-22191973 | None:intergenic | 30.0% | |
| TCAACCATTTCTTAATTCTG+TGG | - | chr8_1:22191953-22191972 | Msa1185250:intron | 30.0% | |
| !! | ATAATGGTGAGTTGATTCTT+TGG | - | chr8_1:22192036-22192055 | Msa1185250:intron | 30.0% |
| ! | CTTTGGTAATTTATCACACT+AGG | - | chr8_1:22192053-22192072 | Msa1185250:intron | 30.0% |
| CCCTTTAATTGTAACTAGTT+TGG | - | chr8_1:22192405-22192424 | Msa1185250:intron | 30.0% | |
| CTCTAACCATTCAAATAATG+TGG | - | chr8_1:22192446-22192465 | Msa1185250:intron | 30.0% | |
| TCTATATGACATAGTAATGC+TGG | - | chr8_1:22192514-22192533 | Msa1185250:intron | 30.0% | |
| TTCAAGAAATTGTCTTCAGT+TGG | - | chr8_1:22193090-22193109 | Msa1185250:intron | 30.0% | |
| !! | ATGTTTAACTTTTGCAGAAG+TGG | - | chr8_1:22193160-22193179 | Msa1185250:intron | 30.0% |
| TCATAACAGTCTATAAACCA+TGG | - | chr8_1:22193290-22193309 | Msa1185250:intron | 30.0% | |
| TCATATGCAATCACAGTAAA+GGG | + | chr8_1:22191901-22191920 | None:intergenic | 30.0% | |
| TTCATATGCAATCACAGTAA+AGG | + | chr8_1:22191902-22191921 | None:intergenic | 30.0% | |
| TGTGATTGCATATGAATTCT+AGG | - | chr8_1:22191906-22191925 | Msa1185250:CDS | 30.0% | |
| ACAGAATTAAGAAATGGTTG+AGG | + | chr8_1:22191954-22191973 | None:intergenic | 30.0% | |
| TCAACCATTTCTTAATTCTG+TGG | - | chr8_1:22191953-22191972 | Msa1185250:intron | 30.0% | |
| !! | ATAATGGTGAGTTGATTCTT+TGG | - | chr8_1:22192036-22192055 | Msa1185250:intron | 30.0% |
| ! | CTTTGGTAATTTATCACACT+AGG | - | chr8_1:22192053-22192072 | Msa1185250:intron | 30.0% |
| CCCTTTAATTGTAACTAGTT+TGG | - | chr8_1:22192405-22192424 | Msa1185250:intron | 30.0% | |
| CTCTAACCATTCAAATAATG+TGG | - | chr8_1:22192446-22192465 | Msa1185250:intron | 30.0% | |
| TCTATATGACATAGTAATGC+TGG | - | chr8_1:22192514-22192533 | Msa1185250:intron | 30.0% | |
| TTCAAGAAATTGTCTTCAGT+TGG | - | chr8_1:22193090-22193109 | Msa1185250:intron | 30.0% | |
| !! | ATGTTTAACTTTTGCAGAAG+TGG | - | chr8_1:22193160-22193179 | Msa1185250:intron | 30.0% |
| TCATAACAGTCTATAAACCA+TGG | - | chr8_1:22193290-22193309 | Msa1185250:intron | 30.0% | |
| CATATGCAATCACAGTAAAG+GGG | + | chr8_1:22191900-22191919 | None:intergenic | 35.0% | |
| CATTTCTTAATTCTGTGGCT+GGG | - | chr8_1:22191958-22191977 | Msa1185250:intron | 35.0% | |
| ATTTCTTAATTCTGTGGCTG+GGG | - | chr8_1:22191959-22191978 | Msa1185250:intron | 35.0% | |
| AGTCTGTTGCTGAAACATAA+TGG | - | chr8_1:22192020-22192039 | Msa1185250:intron | 35.0% | |
| AGAGTCATATGCTTAAGATG+TGG | - | chr8_1:22192484-22192503 | Msa1185250:intron | 35.0% | |
| TTGTAAACTAACCCATGCAA+AGG | + | chr8_1:22192575-22192594 | None:intergenic | 35.0% | |
| ATCCATATGCATCACACATA+AGG | + | chr8_1:22192732-22192751 | None:intergenic | 35.0% | |
| TGCATATGGATTTCAAACTG+TGG | - | chr8_1:22192741-22192760 | Msa1185250:intron | 35.0% | |
| AAAAGAGACTGAAAACTTCG+CGG | - | chr8_1:22192895-22192914 | Msa1185250:intron | 35.0% | |
| ! | AGTTTGCCTTAGGATGTTTT+TGG | + | chr8_1:22192943-22192962 | None:intergenic | 35.0% |
| AAATGATCGAAGTTTGCCTT+AGG | + | chr8_1:22192953-22192972 | None:intergenic | 35.0% | |
| GTTGTTTATGGAGCAAATGT+AGG | - | chr8_1:22193210-22193229 | Msa1185250:intron | 35.0% | |
| CATATGCAATCACAGTAAAG+GGG | + | chr8_1:22191900-22191919 | None:intergenic | 35.0% | |
| CATTTCTTAATTCTGTGGCT+GGG | - | chr8_1:22191958-22191977 | Msa1185250:intron | 35.0% | |
| ATTTCTTAATTCTGTGGCTG+GGG | - | chr8_1:22191959-22191978 | Msa1185250:intron | 35.0% | |
| AGTCTGTTGCTGAAACATAA+TGG | - | chr8_1:22192020-22192039 | Msa1185250:intron | 35.0% | |
| AGAGTCATATGCTTAAGATG+TGG | - | chr8_1:22192484-22192503 | Msa1185250:intron | 35.0% | |
| TTGTAAACTAACCCATGCAA+AGG | + | chr8_1:22192575-22192594 | None:intergenic | 35.0% | |
| ATCCATATGCATCACACATA+AGG | + | chr8_1:22192732-22192751 | None:intergenic | 35.0% | |
| TGCATATGGATTTCAAACTG+TGG | - | chr8_1:22192741-22192760 | Msa1185250:intron | 35.0% | |
| AAAAGAGACTGAAAACTTCG+CGG | - | chr8_1:22192895-22192914 | Msa1185250:intron | 35.0% | |
| ! | AGTTTGCCTTAGGATGTTTT+TGG | + | chr8_1:22192943-22192962 | None:intergenic | 35.0% |
| AAATGATCGAAGTTTGCCTT+AGG | + | chr8_1:22192953-22192972 | None:intergenic | 35.0% | |
| GTTGTTTATGGAGCAAATGT+AGG | - | chr8_1:22193210-22193229 | Msa1185250:intron | 35.0% | |
| ! | ATCTCTTCTGTGTTACTCTC+AGG | - | chr8_1:22191786-22191805 | Msa1185250:three_prime_UTR | 40.0% |
| CACAGTAAAGGGGAATTCAA+CGG | + | chr8_1:22191890-22191909 | None:intergenic | 40.0% | |
| CCAGCCACAGAATTAAGAAA+TGG | + | chr8_1:22191960-22191979 | None:intergenic | 40.0% | |
| CCATTTCTTAATTCTGTGGC+TGG | - | chr8_1:22191957-22191976 | Msa1185250:intron | 40.0% | |
| CAAAAGCAGTTACCTGTGAA+CGG | + | chr8_1:22192126-22192145 | None:intergenic | 40.0% | |
| AGTCATCTTGAACCTTTGCA+TGG | - | chr8_1:22192560-22192579 | Msa1185250:intron | 40.0% | |
| GTCATCTTGAACCTTTGCAT+GGG | - | chr8_1:22192561-22192580 | Msa1185250:intron | 40.0% | |
| TGCCTTATGTGTGATGCATA+TGG | - | chr8_1:22192727-22192746 | Msa1185250:intron | 40.0% | |
| ! | GCGAAGTTTTCAGTCTCTTT+TGG | + | chr8_1:22192896-22192915 | None:intergenic | 40.0% |
| ! | GGCAAACTTCGATCATTTTC+AGG | - | chr8_1:22192955-22192974 | Msa1185250:intron | 40.0% |
| TGTTTACAGCTGAAATCAGC+TGG | + | chr8_1:22193244-22193263 | None:intergenic | 40.0% | |
| ! | AGCTGATTTCAGCTGTAAAC+AGG | - | chr8_1:22193243-22193262 | Msa1185250:intron | 40.0% |
| CAGCTGTAAACAGGTGATTA+TGG | - | chr8_1:22193252-22193271 | Msa1185250:intron | 40.0% | |
| ! | ATCTCTTCTGTGTTACTCTC+AGG | - | chr8_1:22191786-22191805 | Msa1185250:three_prime_UTR | 40.0% |
| CACAGTAAAGGGGAATTCAA+CGG | + | chr8_1:22191890-22191909 | None:intergenic | 40.0% | |
| CCAGCCACAGAATTAAGAAA+TGG | + | chr8_1:22191960-22191979 | None:intergenic | 40.0% | |
| CCATTTCTTAATTCTGTGGC+TGG | - | chr8_1:22191957-22191976 | Msa1185250:intron | 40.0% | |
| CAAAAGCAGTTACCTGTGAA+CGG | + | chr8_1:22192126-22192145 | None:intergenic | 40.0% | |
| AGTCATCTTGAACCTTTGCA+TGG | - | chr8_1:22192560-22192579 | Msa1185250:intron | 40.0% | |
| GTCATCTTGAACCTTTGCAT+GGG | - | chr8_1:22192561-22192580 | Msa1185250:intron | 40.0% | |
| TGCCTTATGTGTGATGCATA+TGG | - | chr8_1:22192727-22192746 | Msa1185250:intron | 40.0% | |
| ! | GCGAAGTTTTCAGTCTCTTT+TGG | + | chr8_1:22192896-22192915 | None:intergenic | 40.0% |
| ! | GGCAAACTTCGATCATTTTC+AGG | - | chr8_1:22192955-22192974 | Msa1185250:intron | 40.0% |
| TGTTTACAGCTGAAATCAGC+TGG | + | chr8_1:22193244-22193263 | None:intergenic | 40.0% | |
| ! | AGCTGATTTCAGCTGTAAAC+AGG | - | chr8_1:22193243-22193262 | Msa1185250:intron | 40.0% |
| CAGCTGTAAACAGGTGATTA+TGG | - | chr8_1:22193252-22193271 | Msa1185250:intron | 40.0% | |
| CAATGCTCATGAGCTTCTCA+AGG | + | chr8_1:22192865-22192884 | None:intergenic | 45.0% | |
| CGCGGCATCATTGTCTAAAT+TGG | - | chr8_1:22192913-22192932 | Msa1185250:intron | 45.0% | |
| GGCTTGCCAAAAACATCCTA+AGG | - | chr8_1:22192934-22192953 | Msa1185250:intron | 45.0% | |
| CAGAAGTGGCTTGAGAAGAA+TGG | - | chr8_1:22193174-22193193 | Msa1185250:intron | 45.0% | |
| !! | CCTAATCTTAGAGGTGTCCA+TGG | + | chr8_1:22193310-22193329 | None:intergenic | 45.0% |
| !! | CCATGGACACCTCTAAGATT+AGG | - | chr8_1:22193307-22193326 | Msa1185250:intron | 45.0% |
| CAATGCTCATGAGCTTCTCA+AGG | + | chr8_1:22192865-22192884 | None:intergenic | 45.0% | |
| CGCGGCATCATTGTCTAAAT+TGG | - | chr8_1:22192913-22192932 | Msa1185250:intron | 45.0% | |
| GGCTTGCCAAAAACATCCTA+AGG | - | chr8_1:22192934-22192953 | Msa1185250:intron | 45.0% | |
| CAGAAGTGGCTTGAGAAGAA+TGG | - | chr8_1:22193174-22193193 | Msa1185250:intron | 45.0% | |
| !! | CCTAATCTTAGAGGTGTCCA+TGG | + | chr8_1:22193310-22193329 | None:intergenic | 45.0% |
| !! | CCATGGACACCTCTAAGATT+AGG | - | chr8_1:22193307-22193326 | Msa1185250:intron | 45.0% |
| !! | TAATATATAAATATTACTAT+AGG | - | chr8_1:22193120-22193139 | Msa1185250:intron | 5.0% |
| !! | TAATATATAAATATTACTAT+AGG | - | chr8_1:22193120-22193139 | Msa1185250:intron | 5.0% |
| AAGCAGTTACCTGTGAACGG+CGG | + | chr8_1:22192123-22192142 | None:intergenic | 50.0% | |
| !! | CTCTAAGATTAGGCGTGTCG+CGG | - | chr8_1:22193317-22193336 | Msa1185250:CDS | 50.0% |
| AAGCAGTTACCTGTGAACGG+CGG | + | chr8_1:22192123-22192142 | None:intergenic | 50.0% | |
| !! | CTCTAAGATTAGGCGTGTCG+CGG | - | chr8_1:22193317-22193336 | Msa1185250:CDS | 50.0% |
| CGCGACACGCCTAATCTTAG+AGG | + | chr8_1:22193319-22193338 | None:intergenic | 55.0% | |
| CGCGACACGCCTAATCTTAG+AGG | + | chr8_1:22193319-22193338 | None:intergenic | 55.0% | |
| TCATTCTCGCCGCCGTTCAC+AGG | - | chr8_1:22192111-22192130 | Msa1185250:intron | 60.0% | |
| TCATTCTCGCCGCCGTTCAC+AGG | - | chr8_1:22192111-22192130 | Msa1185250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 22191767 | 22193349 | 22191767 | ID=Msa1185250;Name=Msa1185250 |
| chr8_1 | mRNA | 22191767 | 22193349 | 22191767 | ID=Msa1185250-mRNA-1;Parent=Msa1185250;Name=Msa1185250-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.33|0.25|0.5|1|0.75|4|101|120 |
| chr8_1 | exon | 22191767 | 22191939 | 22191767 | ID=Msa1185250-mRNA-1:exon:8237;Parent=Msa1185250-mRNA-1 |
| chr8_1 | exon | 22192140 | 22192331 | 22192140 | ID=Msa1185250-mRNA-1:exon:8236;Parent=Msa1185250-mRNA-1 |
| chr8_1 | exon | 22192984 | 22193041 | 22192984 | ID=Msa1185250-mRNA-1:exon:8235;Parent=Msa1185250-mRNA-1 |
| chr8_1 | exon | 22193309 | 22193349 | 22193309 | ID=Msa1185250-mRNA-1:exon:8234;Parent=Msa1185250-mRNA-1 |
| chr8_1 | CDS | 22193309 | 22193349 | 22193309 | ID=Msa1185250-mRNA-1:cds;Parent=Msa1185250-mRNA-1 |
| chr8_1 | CDS | 22192984 | 22193041 | 22192984 | ID=Msa1185250-mRNA-1:cds;Parent=Msa1185250-mRNA-1 |
| chr8_1 | CDS | 22192140 | 22192331 | 22192140 | ID=Msa1185250-mRNA-1:cds;Parent=Msa1185250-mRNA-1 |
| chr8_1 | CDS | 22191868 | 22191939 | 22191868 | ID=Msa1185250-mRNA-1:cds;Parent=Msa1185250-mRNA-1 |
| chr8_1 | three_prime_UTR | 22191767 | 22191867 | 22191767 | ID=Msa1185250-mRNA-1:three_prime_utr;Parent=Msa1185250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
