Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186380 | XP_003627796.1 | 95.579 | 475 | 15 | 1 | 1 | 475 | 1 | 469 | 0.0 | 923 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186380 | sp|Q42586|UMPS_ARATH | 74.268 | 478 | 114 | 3 | 1 | 475 | 4 | 475 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186380 | Q1RU71 | 95.579 | 475 | 15 | 1 | 1 | 475 | 1 | 469 | 0.0 | 923 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1186380 | Msa1240540 | 0.877609 | 5.480210e-69 | -8.615850e-47 |
| Msa1186380 | Msa1282010 | 0.899197 | 2.516211e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186380 | MtrunA17_Chr8g0352721 | 95.579 | 475 | 15 | 1 | 1 | 475 | 1 | 469 | 0.0 | 923 |
| Msa1186380 | MtrunA17_Chr3g0083561 | 83.824 | 476 | 68 | 2 | 1 | 473 | 7 | 476 | 0.0 | 786 |
| Msa1186380 | MtrunA17_Chr1g0156541 | 83.403 | 476 | 70 | 2 | 1 | 473 | 7 | 476 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186380 | AT3G54470.1 | 74.268 | 478 | 114 | 3 | 1 | 475 | 4 | 475 | 0.0 | 731 |
Find 138 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTCTCAGTGAGCTTTA+AGG | 0.126315 | 8_1:-24630151 | None:intergenic |
| GAAATCTCAGCTGTCAAATT+TGG | 0.191735 | 8_1:+24630207 | Msa1186380:CDS |
| CAGAGGGATCTTTCATATAT+TGG | 0.199334 | 8_1:+24631634 | Msa1186380:intron |
| GATCATTCTGACTTTGTTAT+TGG | 0.242263 | 8_1:+24631918 | Msa1186380:CDS |
| TCAAGGATGGAGTGCATATT+TGG | 0.250929 | 8_1:+24633141 | Msa1186380:CDS |
| GCGATCGGTGGTGATGGTTT+GGG | 0.264314 | 8_1:+24632023 | Msa1186380:CDS |
| GGCGATCGGTGGTGATGGTT+TGG | 0.272966 | 8_1:+24632022 | Msa1186380:CDS |
| AATCACAACTCGAAATATTA+TGG | 0.274633 | 8_1:+24633384 | Msa1186380:three_prime_UTR |
| TATTTGGAAAAGTGCAATTA+AGG | 0.276049 | 8_1:+24633157 | Msa1186380:CDS |
| TCAATCCAGCGTCGTGGTCT+AGG | 0.288057 | 8_1:+24631952 | Msa1186380:CDS |
| TACTAGTGGAACATCGGTTT+TGG | 0.292483 | 8_1:+24630530 | Msa1186380:CDS |
| CTCGCCATCGTATACTTAAA+AGG | 0.295283 | 8_1:+24628574 | Msa1186380:five_prime_UTR |
| GCAATAGGTAGGGCAGTATA+AGG | 0.296272 | 8_1:-24630375 | None:intergenic |
| ATTTGACAGCTGAGATTTCA+TGG | 0.301503 | 8_1:-24630203 | None:intergenic |
| AAATCAGAAGGTTGCTGCTT+TGG | 0.305232 | 8_1:+24630761 | Msa1186380:CDS |
| GAAGAAGGCATTGTCATCTT+TGG | 0.314469 | 8_1:+24630800 | Msa1186380:CDS |
| TATCATATTGAATGCAAGTT+TGG | 0.316333 | 8_1:+24633285 | Msa1186380:three_prime_UTR |
| ATCTTCCTTGGCAAGGTTAC+CGG | 0.321193 | 8_1:-24631865 | None:intergenic |
| CCAAACTCTTCCATTTGGTT+AGG | 0.322827 | 8_1:-24633189 | None:intergenic |
| CCTAACCAAATGGAAGAGTT+TGG | 0.324055 | 8_1:+24633189 | Msa1186380:three_prime_UTR |
| AGGCGGAGGTCTATGTAAAT+TGG | 0.327212 | 8_1:-24630261 | None:intergenic |
| AAAGAGGTTGTTTGAGATAA+TGG | 0.328518 | 8_1:+24630854 | Msa1186380:CDS |
| CAGAAGGGTAAGATATAATA+AGG | 0.338277 | 8_1:-24630281 | None:intergenic |
| AACTTGCATTCAATATGATA+TGG | 0.342735 | 8_1:-24633282 | None:intergenic |
| GTTGCAATACTTACAGAATA+TGG | 0.343716 | 8_1:-24632062 | None:intergenic |
| ACAAGGTGGAAGAGAGAATC+TGG | 0.364094 | 8_1:+24630620 | Msa1186380:CDS |
| TGTTTCATTCATGCAACTCC+TGG | 0.370072 | 8_1:+24631990 | Msa1186380:CDS |
| GGTTGTTATGAGATTCTTAG+AGG | 0.375138 | 8_1:+24630737 | Msa1186380:CDS |
| ACACAACTTCTTAATATTTG+AGG | 0.375899 | 8_1:+24631471 | Msa1186380:CDS |
| CGCAAGGAAATCAAAGACTA+TGG | 0.377270 | 8_1:+24630441 | Msa1186380:CDS |
| GGCTTGATGAGGAGATGGTT+AGG | 0.383602 | 8_1:+24630715 | Msa1186380:CDS |
| TGTGGATGGACTGAAATTAA+AGG | 0.386249 | 8_1:+24631703 | Msa1186380:CDS |
| GATCTTTCATATATTGGATT+GGG | 0.387093 | 8_1:+24631640 | Msa1186380:CDS |
| CCGAAATCCGGAGTAAAATC+TGG | 0.398459 | 8_1:-24631189 | None:intergenic |
| TAAGCATGGCCAAAGTTGTT+TGG | 0.403073 | 8_1:+24630491 | Msa1186380:CDS |
| CCAAAGTTGTTTGGTAATTG+AGG | 0.407599 | 8_1:+24630500 | Msa1186380:CDS |
| TTCAGTCCATCCACAATTCC+AGG | 0.408605 | 8_1:-24631695 | None:intergenic |
| CTCTGTTTGGCTGCGGATGT+TGG | 0.411459 | 8_1:+24630894 | Msa1186380:CDS |
| GGAAACTTCAAGCTTAAATC+CGG | 0.413842 | 8_1:+24630228 | Msa1186380:CDS |
| CACACCCAAACTCTTCCATT+TGG | 0.416706 | 8_1:-24633194 | None:intergenic |
| CAAACTCTTCCATTTGGTTA+GGG | 0.419984 | 8_1:-24633188 | None:intergenic |
| CTAACCAAATGGAAGAGTTT+GGG | 0.426497 | 8_1:+24633190 | Msa1186380:three_prime_UTR |
| TAGGGTTTGCCTCGTGGAAA+GGG | 0.428884 | 8_1:+24631813 | Msa1186380:intron |
| GAAGGAAAGTAATCTCTGTT+TGG | 0.438745 | 8_1:+24630881 | Msa1186380:CDS |
| AATTCTTAAATTGACTGAAA+TGG | 0.439196 | 8_1:+24630668 | Msa1186380:CDS |
| GGATCTTTCATATATTGGAT+TGG | 0.442158 | 8_1:+24631639 | Msa1186380:CDS |
| GCTCGCGAATACCGTCTTCA+AGG | 0.453060 | 8_1:+24633124 | Msa1186380:CDS |
| GCTCACATTATCTCTGGTCC+TGG | 0.454214 | 8_1:+24631677 | Msa1186380:CDS |
| TCATAGTTTGAGAAATTTGT+CGG | 0.458857 | 8_1:-24630308 | None:intergenic |
| ACAGATACACAAGTGGCAAT+AGG | 0.466504 | 8_1:-24630390 | None:intergenic |
| CCTCAATTACCAAACAACTT+TGG | 0.470170 | 8_1:-24630500 | None:intergenic |
| ATGCTTAAAATCCCCTTCAA+TGG | 0.472118 | 8_1:-24630475 | None:intergenic |
| ATAACTTCACACATAATGCT+TGG | 0.472319 | 8_1:-24633332 | None:intergenic |
| CAATCCAGCGTCGTGGTCTA+GGG | 0.472624 | 8_1:+24631953 | Msa1186380:CDS |
| GTAAATGCTCACATTATCTC+TGG | 0.472821 | 8_1:+24631671 | Msa1186380:CDS |
| TCAAACAACCTCTTTCCCAT+TGG | 0.473332 | 8_1:-24630846 | None:intergenic |
| TTAGGGTTTGCCTCGTGGAA+AGG | 0.474549 | 8_1:+24631812 | Msa1186380:intron |
| TGCAACTCCTGGAGTTCAAA+TGG | 0.475453 | 8_1:+24632001 | Msa1186380:CDS |
| TCCTTAAAGCTCACTGAGAA+AGG | 0.478439 | 8_1:+24630150 | Msa1186380:five_prime_UTR |
| TATCATCAAAGCAGCAAATC+CGG | 0.479086 | 8_1:+24633093 | Msa1186380:CDS |
| GCTTGTATTCCCTAACCAAA+TGG | 0.481263 | 8_1:+24633179 | Msa1186380:three_prime_UTR |
| TCAATATGATATGGATGTGC+AGG | 0.483498 | 8_1:-24633273 | None:intergenic |
| GCTTGATGAGGAGATGGTTA+GGG | 0.487710 | 8_1:+24630716 | Msa1186380:CDS |
| GGCACTTCTAAAGCCATTGA+AGG | 0.492625 | 8_1:+24630462 | Msa1186380:CDS |
| TAATGTCACTACCCCTATCA+TGG | 0.494196 | 8_1:-24633054 | None:intergenic |
| ACCTCGGCCATGCAGTATGA+AGG | 0.495056 | 8_1:+24631520 | Msa1186380:CDS |
| CTTTGTTATTGGCTTCATCT+CGG | 0.496047 | 8_1:+24631929 | Msa1186380:CDS |
| TGCAGCAGTGTAATCTTCCT+TGG | 0.500427 | 8_1:-24631877 | None:intergenic |
| GCTGCGCCGTTGCGTAACAT+AGG | 0.500507 | 8_1:+24630558 | Msa1186380:CDS |
| TATTCGCGAGCTGCTGCAGC+CGG | 0.500541 | 8_1:-24633112 | None:intergenic |
| GCGAATACCGTCTTCAAGGA+TGG | 0.504437 | 8_1:+24633128 | Msa1186380:CDS |
| CGATCGGTGGTGATGGTTTG+GGG | 0.505389 | 8_1:+24632024 | Msa1186380:CDS |
| GTTTGAGATAATGGCTGAGA+AGG | 0.509959 | 8_1:+24630863 | Msa1186380:CDS |
| CGAAGCTTAGAACCGAAATC+CGG | 0.511784 | 8_1:-24631201 | None:intergenic |
| AGAGAGAATCTGGAGAGTAA+TGG | 0.516591 | 8_1:+24630630 | Msa1186380:CDS |
| ATTGAGGATTTAGTTACTAG+TGG | 0.516671 | 8_1:+24630516 | Msa1186380:CDS |
| CACTGAGAAAGGCACATCAA+TGG | 0.517073 | 8_1:+24630161 | Msa1186380:exon |
| CCGATCGCCATTTGAACTCC+AGG | 0.521870 | 8_1:-24632008 | None:intergenic |
| TCTGGTCCTGGAATTGTGGA+TGG | 0.523500 | 8_1:+24631689 | Msa1186380:CDS |
| TATCTCTGGTCCTGGAATTG+TGG | 0.523722 | 8_1:+24631685 | Msa1186380:CDS |
| GTTGCGTAACATAGGGTTGA+AGG | 0.525932 | 8_1:+24630566 | Msa1186380:CDS |
| AGGAAGGCTTGATGAGGAGA+TGG | 0.530753 | 8_1:+24630710 | Msa1186380:CDS |
| CAAATGGCGATCGGTGGTGA+TGG | 0.537216 | 8_1:+24632017 | Msa1186380:CDS |
| TCCTTGCGGCGCATAACCAT+AGG | 0.538031 | 8_1:-24630426 | None:intergenic |
| GAAATTTGTCGGAGGACAGA+AGG | 0.538225 | 8_1:-24630297 | None:intergenic |
| GCACTTCTAAAGCCATTGAA+GGG | 0.540930 | 8_1:+24630463 | Msa1186380:CDS |
| CTTGCTGAAATGAGTTCAGC+CGG | 0.550747 | 8_1:+24631846 | Msa1186380:CDS |
| ATGCAGCAGCGGCAATAACA+AGG | 0.553585 | 8_1:+24628606 | Msa1186380:five_prime_UTR |
| GGCATTGTCATCTTTGGAGA+GGG | 0.554332 | 8_1:+24630806 | Msa1186380:CDS |
| AAATACAACTAAGTTGAAGA+AGG | 0.554785 | 8_1:+24630785 | Msa1186380:CDS |
| CCCTTCATACTGCATGGCCG+AGG | 0.557238 | 8_1:-24631521 | None:intergenic |
| CCTTGCGGCGCATAACCATA+GGG | 0.557370 | 8_1:-24630425 | None:intergenic |
| ATACACAAGTGGCAATAGGT+AGG | 0.560586 | 8_1:-24630386 | None:intergenic |
| GTAAATTGGAGAGGAGATGC+CGG | 0.562295 | 8_1:-24630247 | None:intergenic |
| CCCTATGGTTATGCGCCGCA+AGG | 0.567893 | 8_1:+24630425 | Msa1186380:CDS |
| TGTCACTCACAACATCCCTA+TGG | 0.570619 | 8_1:+24630410 | Msa1186380:CDS |
| CAATAGGTAGGGCAGTATAA+GGG | 0.571437 | 8_1:-24630374 | None:intergenic |
| CATAGTCTTTGATTTCCTTG+CGG | 0.572557 | 8_1:-24630440 | None:intergenic |
| GATCGTAAGTTTGCCGACAT+CGG | 0.574286 | 8_1:+24631493 | Msa1186380:CDS |
| ATTCTTAGAGGAAAATCAGA+AGG | 0.582001 | 8_1:+24630749 | Msa1186380:CDS |
| CAGTGTAATCTTCCTTGGCA+AGG | 0.582674 | 8_1:-24631872 | None:intergenic |
| AATACTTAGGGTTTGCCTCG+TGG | 0.591469 | 8_1:+24631807 | Msa1186380:intron |
| TACACAAGTGGCAATAGGTA+GGG | 0.593517 | 8_1:-24630385 | None:intergenic |
| AAGTAATCTCTGTTTGGCTG+CGG | 0.594715 | 8_1:+24630887 | Msa1186380:CDS |
| AAATTTGTCGGAGGACAGAA+GGG | 0.597712 | 8_1:-24630296 | None:intergenic |
| GGCCGAGGTATTACCGATGT+CGG | 0.597823 | 8_1:-24631506 | None:intergenic |
| TTTAGTTACTAGTGGAACAT+CGG | 0.598433 | 8_1:+24630524 | Msa1186380:CDS |
| GACATTATCATAGTCGGACG+TGG | 0.598657 | 8_1:+24633070 | Msa1186380:CDS |
| TTTCAGGTTATCCATGATAG+GGG | 0.599223 | 8_1:+24633043 | Msa1186380:intron |
| TATAAGGGACACCGCAGACA+AGG | 0.604577 | 8_1:-24630359 | None:intergenic |
| TATGCAAAATTGCAGTAACA+TGG | 0.604654 | 8_1:+24633249 | Msa1186380:three_prime_UTR |
| CACTTCTAAAGCCATTGAAG+GGG | 0.608981 | 8_1:+24630464 | Msa1186380:CDS |
| GCATTACCCTTCATACTGCA+TGG | 0.609301 | 8_1:-24631527 | None:intergenic |
| CCTGGAGTTCAAATGGCGAT+CGG | 0.613183 | 8_1:+24632008 | Msa1186380:CDS |
| AGGCATTGTCATCTTTGGAG+AGG | 0.614645 | 8_1:+24630805 | Msa1186380:CDS |
| GGTAGTGACATTATCATAGT+CGG | 0.618352 | 8_1:+24633064 | Msa1186380:CDS |
| ATGCTTGCTGAAAACTCATG+TGG | 0.618767 | 8_1:+24631158 | Msa1186380:CDS |
| TTCAGCCGGTAACCTTGCCA+AGG | 0.622537 | 8_1:+24631860 | Msa1186380:CDS |
| GGTAAGATATAATAAGGCGG+AGG | 0.625669 | 8_1:-24630275 | None:intergenic |
| CCTCGGCCATGCAGTATGAA+GGG | 0.628115 | 8_1:+24631521 | Msa1186380:CDS |
| GGTGCAAACTTATGCAGCAG+CGG | 0.633352 | 8_1:+24628595 | Msa1186380:five_prime_UTR |
| ATGCACTCCATCCTTGAAGA+CGG | 0.634810 | 8_1:-24633135 | None:intergenic |
| ATTGCTTGAAATTGCCGACA+AGG | 0.638723 | 8_1:+24630929 | Msa1186380:CDS |
| AGTGCCCTAGACCACGACGC+TGG | 0.638835 | 8_1:-24631957 | None:intergenic |
| TTCAACCCTATGTTACGCAA+CGG | 0.641906 | 8_1:-24630564 | None:intergenic |
| ACAAAATTCGACCTTGTCTG+CGG | 0.646538 | 8_1:+24630348 | Msa1186380:CDS |
| GGAGTTCAAATGGCGATCGG+TGG | 0.647339 | 8_1:+24632011 | Msa1186380:CDS |
| TGCCGACATCGGTAATACCT+CGG | 0.647655 | 8_1:+24631504 | Msa1186380:CDS |
| GAGGTCTATGTAAATTGGAG+AGG | 0.650837 | 8_1:-24630256 | None:intergenic |
| TAGTTTGAGAAATTTGTCGG+AGG | 0.654215 | 8_1:-24630305 | None:intergenic |
| GGAGTTGCATGAATGAAACA+AGG | 0.667159 | 8_1:-24631987 | None:intergenic |
| TGCAGCAGTGAAAATTGCTG+AGG | 0.668834 | 8_1:+24631896 | Msa1186380:CDS |
| TCTCGGTCAATCCAGCGTCG+TGG | 0.669937 | 8_1:+24631946 | Msa1186380:CDS |
| TTTCGGTTCTAAGCTTCGCG+CGG | 0.682835 | 8_1:+24631206 | Msa1186380:CDS |
| TTGATTGATAGAGAACAAGG+TGG | 0.705011 | 8_1:+24630606 | Msa1186380:CDS |
| AAGGGTAAGATATAATAAGG+CGG | 0.707210 | 8_1:-24630278 | None:intergenic |
| GTGAGTGACAGATACACAAG+TGG | 0.716854 | 8_1:-24630397 | None:intergenic |
| AGCAACAAACCCTTTCCACG+AGG | 0.731068 | 8_1:-24631822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATAAAAAATATTAT+GGG | + | chr8_1:24632440-24632459 | Msa1186380:intron | 0.0% |
| !! | AAAACAATTTAACTATATTA+CGG | + | chr8_1:24629242-24629261 | Msa1186380:intron | 10.0% |
| !!! | TTTTTTATTTAGAAAATGAA+TGG | - | chr8_1:24632191-24632210 | None:intergenic | 10.0% |
| !! | AATTAGTTAAAAGTTAGTTA+CGG | + | chr8_1:24629072-24629091 | Msa1186380:intron | 15.0% |
| !! | AAACAATTTAACTATATTAC+GGG | + | chr8_1:24629243-24629262 | Msa1186380:intron | 15.0% |
| !!! | TGTTAGTATTAGTAATTTTA+TGG | - | chr8_1:24629442-24629461 | None:intergenic | 15.0% |
| !! | TAAAATGATGAATAATACTT+AGG | + | chr8_1:24631794-24631813 | Msa1186380:intron | 15.0% |
| !! | AAAATGATGAATAATACTTA+GGG | + | chr8_1:24631795-24631814 | Msa1186380:intron | 15.0% |
| !! | AAATTATTGAAAATGTATTG+CGG | + | chr8_1:24632508-24632527 | Msa1186380:intron | 15.0% |
| !!! | GAGATTTTTATTAATTAAAG+TGG | + | chr8_1:24632569-24632588 | Msa1186380:intron | 15.0% |
| !! | TTTCAATACTGAATATTAAA+GGG | - | chr8_1:24632869-24632888 | None:intergenic | 15.0% |
| !!! | TTTTCAATACTGAATATTAA+AGG | - | chr8_1:24632870-24632889 | None:intergenic | 15.0% |
| !! | ATTTATATTGTAGCTTATAG+CGG | + | chr8_1:24628729-24628748 | Msa1186380:intron | 20.0% |
| !! | ATTAGTTAAAAGTTAGTTAC+GGG | + | chr8_1:24629073-24629092 | Msa1186380:intron | 20.0% |
| !!! | AGGAATTTTATGATTAAATC+TGG | + | chr8_1:24629884-24629903 | Msa1186380:intron | 20.0% |
| !! | AATTCTTAAATTGACTGAAA+TGG | + | chr8_1:24630668-24630687 | Msa1186380:CDS | 20.0% |
| !!! | GTGAAAATTTTGAAAGAAAA+AGG | + | chr8_1:24630690-24630709 | Msa1186380:CDS | 20.0% |
| !!! | AAATTTTGAAAGAAAAAGGA+AGG | + | chr8_1:24630694-24630713 | Msa1186380:CDS | 20.0% |
| !!! | AGTGTTCTTAATTTGAAATA+TGG | + | chr8_1:24631016-24631035 | Msa1186380:intron | 20.0% |
| !!! | TCTTAATTTGAAATATGGAT+TGG | + | chr8_1:24631021-24631040 | Msa1186380:intron | 20.0% |
| !!! | TTTGTATTTTCTTGTTTATC+AGG | + | chr8_1:24631122-24631141 | Msa1186380:intron | 20.0% |
| !! | TTATGATCATAATTCTTCTA+TGG | - | chr8_1:24631730-24631749 | None:intergenic | 20.0% |
| !! | AAAAATGAACCATCAATAAA+AGG | + | chr8_1:24632207-24632226 | Msa1186380:intron | 20.0% |
| !! | AAAATGAACCATCAATAAAA+GGG | + | chr8_1:24632208-24632227 | Msa1186380:intron | 20.0% |
| !!! | GATGTTAGATATAAAGATTT+TGG | - | chr8_1:24632300-24632319 | None:intergenic | 20.0% |
| !!! | TAATATTTTACTCATTTGTC+CGG | - | chr8_1:24632392-24632411 | None:intergenic | 20.0% |
| !! | CAACTGAAATGATAATATTT+AGG | - | chr8_1:24632473-24632492 | None:intergenic | 20.0% |
| !! | TTCAATACTGAATATTAAAG+GGG | - | chr8_1:24632868-24632887 | None:intergenic | 20.0% |
| !! | CAAAAAGGAATATAAATAAG+AGG | - | chr8_1:24632915-24632934 | None:intergenic | 20.0% |
| ! | TATGAAATGACGTAAAAAAG+AGG | + | chr8_1:24628816-24628835 | Msa1186380:intron | 25.0% |
| ! | ATGACTAAAAAAGACATGTT+TGG | - | chr8_1:24628992-24629011 | None:intergenic | 25.0% |
| !! | GATTTAACAAAGAGTTTGTT+TGG | - | chr8_1:24629052-24629071 | None:intergenic | 25.0% |
| ! | TTAGTTAAAAGTTAGTTACG+GGG | + | chr8_1:24629074-24629093 | Msa1186380:intron | 25.0% |
| ! | CTAGTAGATAAACTCAAATA+AGG | - | chr8_1:24629115-24629134 | None:intergenic | 25.0% |
| ! | TCCATGATAGTTTATGAAAA+TGG | + | chr8_1:24629204-24629223 | Msa1186380:intron | 25.0% |
| !! | ACCATTTTCATAAACTATCA+TGG | - | chr8_1:24629208-24629227 | None:intergenic | 25.0% |
| !!! | TTTACAGTTTTGATACATTC+AGG | - | chr8_1:24629318-24629337 | None:intergenic | 25.0% |
| !!! | GTCTGTTTTATTAGTCATTT+TGG | + | chr8_1:24629351-24629370 | Msa1186380:intron | 25.0% |
| ! | TTGCAATTTCGATACATTTA+AGG | + | chr8_1:24629483-24629502 | Msa1186380:intron | 25.0% |
| ! | TTGTTCTTAGAATTTCGATT+GGG | - | chr8_1:24629730-24629749 | None:intergenic | 25.0% |
| ! | TTCAATTATGCCTATAAACT+AGG | - | chr8_1:24629765-24629784 | None:intergenic | 25.0% |
| ! | ATACATGATTTAGCATAAAG+TGG | - | chr8_1:24629993-24630012 | None:intergenic | 25.0% |
| ! | TCATAGTTTGAGAAATTTGT+CGG | - | chr8_1:24630311-24630330 | None:intergenic | 25.0% |
| !! | AAATACAACTAAGTTGAAGA+AGG | + | chr8_1:24630785-24630804 | Msa1186380:CDS | 25.0% |
| ! | TAAAAAATTTCTCACCTTGT+CGG | - | chr8_1:24630946-24630965 | None:intergenic | 25.0% |
| !!! | GAAATTTTTTATTACAGCGA+TGG | + | chr8_1:24630955-24630974 | Msa1186380:intron | 25.0% |
| !!! | TATTTTCTTGTTTATCAGGT+TGG | + | chr8_1:24631126-24631145 | Msa1186380:intron | 25.0% |
| !!! | ATTTTCTTGTTTATCAGGTT+GGG | + | chr8_1:24631127-24631146 | Msa1186380:intron | 25.0% |
| !! | TATTTTTCCAGATTTTACTC+CGG | + | chr8_1:24631182-24631201 | Msa1186380:CDS | 25.0% |
| !! | CAACATTTAACCAATTTTTG+AGG | + | chr8_1:24631382-24631401 | Msa1186380:intron | 25.0% |
| ! | GAATGAAATTCCTCAAAAAT+TGG | - | chr8_1:24631395-24631414 | None:intergenic | 25.0% |
| ! | ACACAACTTCTTAATATTTG+AGG | + | chr8_1:24631471-24631490 | Msa1186380:CDS | 25.0% |
| ! | GATCTTTCATATATTGGATT+GGG | + | chr8_1:24631640-24631659 | Msa1186380:CDS | 25.0% |
| ! | AAATGAACCATCAATAAAAG+GGG | + | chr8_1:24632209-24632228 | Msa1186380:intron | 25.0% |
| !!! | AGCACTTTACTTTTAACATT+TGG | + | chr8_1:24632336-24632355 | Msa1186380:intron | 25.0% |
| !!! | GCACTTTACTTTTAACATTT+GGG | + | chr8_1:24632337-24632356 | Msa1186380:intron | 25.0% |
| !! | AATATTTTACTCATTTGTCC+GGG | - | chr8_1:24632391-24632410 | None:intergenic | 25.0% |
| ! | TATGCAAGTTAAGTAAAGAA+GGG | - | chr8_1:24632735-24632754 | None:intergenic | 25.0% |
| ! | ATATGCAAGTTAAGTAAAGA+AGG | - | chr8_1:24632736-24632755 | None:intergenic | 25.0% |
| ! | AAATAAGAATGCAATGAGTT+TGG | - | chr8_1:24632781-24632800 | None:intergenic | 25.0% |
| !!! | TTCTTTGAAGTTGATTTATG+TGG | + | chr8_1:24632799-24632818 | Msa1186380:intron | 25.0% |
| ! | AACCTGAAAAAGAAAAACAT+TGG | - | chr8_1:24633032-24633051 | None:intergenic | 25.0% |
| !! | TATTTGGAAAAGTGCAATTA+AGG | + | chr8_1:24633157-24633176 | Msa1186380:CDS | 25.0% |
| ! | AACTTGCATTCAATATGATA+TGG | - | chr8_1:24633285-24633304 | None:intergenic | 25.0% |
| ! | TATCATATTGAATGCAAGTT+TGG | + | chr8_1:24633285-24633304 | Msa1186380:three_prime_UTR | 25.0% |
| ! | AATCACAACTCGAAATATTA+TGG | + | chr8_1:24633384-24633403 | Msa1186380:three_prime_UTR | 25.0% |
| TTCATAAACTATCATGGAGA+AGG | - | chr8_1:24629202-24629221 | None:intergenic | 30.0% | |
| ACTAATAAAACAGACACTTG+AGG | - | chr8_1:24629346-24629365 | None:intergenic | 30.0% | |
| ACAACCTAAAAACATATCTG+AGG | - | chr8_1:24629378-24629397 | None:intergenic | 30.0% | |
| AATTGCAAACATGTCTATCA+TGG | - | chr8_1:24629471-24629490 | None:intergenic | 30.0% | |
| TTCGATACATTTAAGGACTA+TGG | + | chr8_1:24629490-24629509 | Msa1186380:intron | 30.0% | |
| GTTGTTCTTAGAATTTCGAT+TGG | - | chr8_1:24629731-24629750 | None:intergenic | 30.0% | |
| TCTCTAACAACCTAGTTTAT+AGG | + | chr8_1:24629752-24629771 | Msa1186380:intron | 30.0% | |
| !! | CAGAGTCATTACTTTTAGTA+AGG | + | chr8_1:24629831-24629850 | Msa1186380:intron | 30.0% |
| AAGGGTAAGATATAATAAGG+CGG | - | chr8_1:24630281-24630300 | None:intergenic | 30.0% | |
| CAGAAGGGTAAGATATAATA+AGG | - | chr8_1:24630284-24630303 | None:intergenic | 30.0% | |
| ATTGAGGATTTAGTTACTAG+TGG | + | chr8_1:24630516-24630535 | Msa1186380:CDS | 30.0% | |
| TTTAGTTACTAGTGGAACAT+CGG | + | chr8_1:24630524-24630543 | Msa1186380:CDS | 30.0% | |
| !!! | GTTTTGATTGATAGAGAACA+AGG | + | chr8_1:24630603-24630622 | Msa1186380:CDS | 30.0% |
| ATTCTTAGAGGAAAATCAGA+AGG | + | chr8_1:24630749-24630768 | Msa1186380:CDS | 30.0% | |
| TAAGTTGTCCAAAAATCCAA+TGG | + | chr8_1:24630830-24630849 | Msa1186380:CDS | 30.0% | |
| AAGTTGTCCAAAAATCCAAT+GGG | + | chr8_1:24630831-24630850 | Msa1186380:CDS | 30.0% | |
| ! | AAAGAGGTTGTTTGAGATAA+TGG | + | chr8_1:24630854-24630873 | Msa1186380:CDS | 30.0% |
| GTTCTCTTAAATATCATCGA+AGG | + | chr8_1:24631060-24631079 | Msa1186380:intron | 30.0% | |
| TGAGGAATTTCATTCATTTC+TGG | + | chr8_1:24631400-24631419 | Msa1186380:intron | 30.0% | |
| GGATCTTTCATATATTGGAT+TGG | + | chr8_1:24631639-24631658 | Msa1186380:CDS | 30.0% | |
| ! | GATCATTCTGACTTTGTTAT+TGG | + | chr8_1:24631918-24631937 | Msa1186380:CDS | 30.0% |
| GTTGCAATACTTACAGAATA+TGG | - | chr8_1:24632065-24632084 | None:intergenic | 30.0% | |
| CATATGTGAAGGATCATATA+TGG | + | chr8_1:24632131-24632150 | Msa1186380:intron | 30.0% | |
| TTATCAATTGAGTACACTCT+TGG | + | chr8_1:24632247-24632266 | Msa1186380:intron | 30.0% | |
| !! | TATAAAGATTTTGGAGAGCT+CGG | - | chr8_1:24632291-24632310 | None:intergenic | 30.0% |
| ! | AAATCTCATCGATTGTAACA+TGG | - | chr8_1:24632598-24632617 | None:intergenic | 30.0% |
| ATGCAAGTTAAGTAAAGAAG+GGG | - | chr8_1:24632734-24632753 | None:intergenic | 30.0% | |
| ATACTGAATATTAAAGGGGT+GGG | - | chr8_1:24632864-24632883 | None:intergenic | 30.0% | |
| AATACTGAATATTAAAGGGG+TGG | - | chr8_1:24632865-24632884 | None:intergenic | 30.0% | |
| AGGAAAGAAATACTGCATTA+AGG | - | chr8_1:24632895-24632914 | None:intergenic | 30.0% | |
| ! | CACCAATGTTTTTCTTTTTC+AGG | + | chr8_1:24633027-24633046 | Msa1186380:intron | 30.0% |
| !!! | TTTTTCAGGTTATCCATGAT+AGG | + | chr8_1:24633041-24633060 | Msa1186380:intron | 30.0% |
| !!! | TTTTCAGGTTATCCATGATA+GGG | + | chr8_1:24633042-24633061 | Msa1186380:intron | 30.0% |
| TATGCAAAATTGCAGTAACA+TGG | + | chr8_1:24633249-24633268 | Msa1186380:three_prime_UTR | 30.0% | |
| ATAACTTCACACATAATGCT+TGG | - | chr8_1:24633335-24633354 | None:intergenic | 30.0% | |
| !! | TGCACCTTTTAAGTATACGA+TGG | - | chr8_1:24628581-24628600 | None:intergenic | 35.0% |
| ATGATTGAATTTGCACTGTC+TGG | + | chr8_1:24628761-24628780 | Msa1186380:intron | 35.0% | |
| ! | TTTTCAATTAAGATTGCCGC+CGG | + | chr8_1:24628862-24628881 | Msa1186380:intron | 35.0% |
| !! | ATCATCTCAGTTTTATACCC+CGG | - | chr8_1:24628884-24628903 | None:intergenic | 35.0% |
| ! | TGGTCCTCAGATATGTTTTT+AGG | + | chr8_1:24629371-24629390 | Msa1186380:intron | 35.0% |
| !!! | TCCTCGAATGTGTTTTTTGT+TGG | + | chr8_1:24629406-24629425 | Msa1186380:intron | 35.0% |
| ACCAACAAAAAACACATTCG+AGG | - | chr8_1:24629410-24629429 | None:intergenic | 35.0% | |
| CATACATTCAGCTACTCAAA+TGG | + | chr8_1:24629530-24629549 | Msa1186380:intron | 35.0% | |
| TGCTTTCATGTCAAAGCTAT+CGG | + | chr8_1:24629573-24629592 | Msa1186380:intron | 35.0% | |
| TATCTCATCTCATCCAATGT+GGG | - | chr8_1:24629658-24629677 | None:intergenic | 35.0% | |
| ATATCTCATCTCATCCAATG+TGG | - | chr8_1:24629659-24629678 | None:intergenic | 35.0% | |
| TCCACTTATATACAGGTTGT+CGG | - | chr8_1:24629685-24629704 | None:intergenic | 35.0% | |
| CTGATTCCTCACATCATAAA+GGG | - | chr8_1:24629866-24629885 | None:intergenic | 35.0% | |
| ! | AACAATCAGTGTCATTCAGT+GGG | - | chr8_1:24630113-24630132 | None:intergenic | 35.0% |
| ! | AATGACACTGATTGTTCTGA+AGG | + | chr8_1:24630117-24630136 | Msa1186380:intron | 35.0% |
| ATTTGACAGCTGAGATTTCA+TGG | - | chr8_1:24630206-24630225 | None:intergenic | 35.0% | |
| GAAATCTCAGCTGTCAAATT+TGG | + | chr8_1:24630207-24630226 | Msa1186380:CDS | 35.0% | |
| GGAAACTTCAAGCTTAAATC+CGG | + | chr8_1:24630228-24630247 | Msa1186380:CDS | 35.0% | |
| TAGTTTGAGAAATTTGTCGG+AGG | - | chr8_1:24630308-24630327 | None:intergenic | 35.0% | |
| ! | GAATTTTGTGTTGGAAACAG+AGG | - | chr8_1:24630337-24630356 | None:intergenic | 35.0% |
| ! | CATAGTCTTTGATTTCCTTG+CGG | - | chr8_1:24630443-24630462 | None:intergenic | 35.0% |
| ATGCTTAAAATCCCCTTCAA+TGG | - | chr8_1:24630478-24630497 | None:intergenic | 35.0% | |
| ! | ATTGAAGGGGATTTTAAGCA+TGG | + | chr8_1:24630477-24630496 | Msa1186380:CDS | 35.0% |
| CCTCAATTACCAAACAACTT+TGG | - | chr8_1:24630503-24630522 | None:intergenic | 35.0% | |
| ! | CCAAAGTTGTTTGGTAATTG+AGG | + | chr8_1:24630500-24630519 | Msa1186380:CDS | 35.0% |
| TTGATTGATAGAGAACAAGG+TGG | + | chr8_1:24630606-24630625 | Msa1186380:CDS | 35.0% | |
| GGTTGTTATGAGATTCTTAG+AGG | + | chr8_1:24630737-24630756 | Msa1186380:CDS | 35.0% | |
| GAAGGAAAGTAATCTCTGTT+TGG | + | chr8_1:24630881-24630900 | Msa1186380:CDS | 35.0% | |
| TATCATCGAAGGTTGAAGTT+TGG | + | chr8_1:24631071-24631090 | Msa1186380:intron | 35.0% | |
| GTATCAGTATGCAATACTCA+GGG | - | chr8_1:24631258-24631277 | None:intergenic | 35.0% | |
| AGTATCAGTATGCAATACTC+AGG | - | chr8_1:24631259-24631278 | None:intergenic | 35.0% | |
| ! | ACACGTTACACTCTTTTTGT+AGG | - | chr8_1:24631353-24631372 | None:intergenic | 35.0% |
| TGAATGCAGAAACAGATGAA+AGG | - | chr8_1:24631586-24631605 | None:intergenic | 35.0% | |
| TCTGCAGACAACATAAAAGA+AGG | - | chr8_1:24631618-24631637 | None:intergenic | 35.0% | |
| ! | TTCTTTTATGTTGTCTGCAG+AGG | + | chr8_1:24631617-24631636 | Msa1186380:intron | 35.0% |
| ! | TCTTTTATGTTGTCTGCAGA+GGG | + | chr8_1:24631618-24631637 | Msa1186380:intron | 35.0% |
| CAGAGGGATCTTTCATATAT+TGG | + | chr8_1:24631634-24631653 | Msa1186380:intron | 35.0% | |
| GTAAATGCTCACATTATCTC+TGG | + | chr8_1:24631671-24631690 | Msa1186380:CDS | 35.0% | |
| !! | TGTGGATGGACTGAAATTAA+AGG | + | chr8_1:24631703-24631722 | Msa1186380:CDS | 35.0% |
| !! | CTTTGTTATTGGCTTCATCT+CGG | + | chr8_1:24631929-24631948 | Msa1186380:CDS | 35.0% |
| TGGTAATTAGCAATGCTTAC+AGG | - | chr8_1:24632089-24632108 | None:intergenic | 35.0% | |
| ! | CACATATGAGCATAGACTTT+TGG | - | chr8_1:24632119-24632138 | None:intergenic | 35.0% |
| AAGTCTATGCTCATATGTGA+AGG | + | chr8_1:24632120-24632139 | Msa1186380:intron | 35.0% | |
| ! | TACTGATCCCCTTTTATTGA+TGG | - | chr8_1:24632219-24632238 | None:intergenic | 35.0% |
| ! | GTAAAGTGCTTCATAGATGT+TGG | - | chr8_1:24632326-24632345 | None:intergenic | 35.0% |
| GATTTGAACCATTTACCTTG+AGG | + | chr8_1:24632613-24632632 | Msa1186380:intron | 35.0% | |
| TCCAAATCCTAGTAGGATAA+GGG | - | chr8_1:24632705-24632724 | None:intergenic | 35.0% | |
| ATCCAAATCCTAGTAGGATA+AGG | - | chr8_1:24632706-24632725 | None:intergenic | 35.0% | |
| GGAAAAATCCAAATCCTAGT+AGG | - | chr8_1:24632712-24632731 | None:intergenic | 35.0% | |
| TGCAAGTTAAGTAAAGAAGG+GGG | - | chr8_1:24632733-24632752 | None:intergenic | 35.0% | |
| !! | TTTCAGGTTATCCATGATAG+GGG | + | chr8_1:24633043-24633062 | Msa1186380:intron | 35.0% |
| GGTAGTGACATTATCATAGT+CGG | + | chr8_1:24633064-24633083 | Msa1186380:CDS | 35.0% | |
| TATCATCAAAGCAGCAAATC+CGG | + | chr8_1:24633093-24633112 | Msa1186380:CDS | 35.0% | |
| CAAACTCTTCCATTTGGTTA+GGG | - | chr8_1:24633191-24633210 | None:intergenic | 35.0% | |
| CTAACCAAATGGAAGAGTTT+GGG | + | chr8_1:24633190-24633209 | Msa1186380:three_prime_UTR | 35.0% | |
| TCAATATGATATGGATGTGC+AGG | - | chr8_1:24633276-24633295 | None:intergenic | 35.0% | |
| ! | GTGATTGCAATTTTGTCACT+AGG | - | chr8_1:24633370-24633389 | None:intergenic | 35.0% |
| CTCGCCATCGTATACTTAAA+AGG | + | chr8_1:24628574-24628593 | Msa1186380:five_prime_UTR | 40.0% | |
| TTTCAATTAAGATTGCCGCC+GGG | + | chr8_1:24628863-24628882 | Msa1186380:intron | 40.0% | |
| ! | TTACGGGTAAACCACCATTT+TGG | + | chr8_1:24629259-24629278 | Msa1186380:intron | 40.0% |
| ! | TACACTTTGAGGGACCAAAA+TGG | - | chr8_1:24629276-24629295 | None:intergenic | 40.0% |
| AGTGTAACTCGCTGTCATAT+TGG | + | chr8_1:24629290-24629309 | Msa1186380:intron | 40.0% | |
| GCTTTCATGTCAAAGCTATC+GGG | + | chr8_1:24629574-24629593 | Msa1186380:intron | 40.0% | |
| CCACTTATATACAGGTTGTC+GGG | - | chr8_1:24629684-24629703 | None:intergenic | 40.0% | |
| GACAACCTGTATATAAGTGG+AGG | + | chr8_1:24629684-24629703 | Msa1186380:intron | 40.0% | |
| GATTGGGCTCTTTATAAGTG+AGG | - | chr8_1:24629714-24629733 | None:intergenic | 40.0% | |
| TGTCATCCCTTTATGATGTG+AGG | + | chr8_1:24629857-24629876 | Msa1186380:intron | 40.0% | |
| CCTGATTCCTCACATCATAA+AGG | - | chr8_1:24629867-24629886 | None:intergenic | 40.0% | |
| CCTTTATGATGTGAGGAATC+AGG | + | chr8_1:24629864-24629883 | Msa1186380:intron | 40.0% | |
| ATCGTATCGCAGAACAATAG+CGG | + | chr8_1:24630011-24630030 | Msa1186380:intron | 40.0% | |
| ! | GAACAATCAGTGTCATTCAG+TGG | - | chr8_1:24630114-24630133 | None:intergenic | 40.0% |
| TCCTTAAAGCTCACTGAGAA+AGG | + | chr8_1:24630150-24630169 | Msa1186380:five_prime_UTR | 40.0% | |
| GAGGTCTATGTAAATTGGAG+AGG | - | chr8_1:24630259-24630278 | None:intergenic | 40.0% | |
| GGTAAGATATAATAAGGCGG+AGG | - | chr8_1:24630278-24630297 | None:intergenic | 40.0% | |
| AAATTTGTCGGAGGACAGAA+GGG | - | chr8_1:24630299-24630318 | None:intergenic | 40.0% | |
| ! | GACAAGGTCGAATTTTGTGT+TGG | - | chr8_1:24630346-24630365 | None:intergenic | 40.0% |
| ACAAAATTCGACCTTGTCTG+CGG | + | chr8_1:24630348-24630367 | Msa1186380:CDS | 40.0% | |
| CAATAGGTAGGGCAGTATAA+GGG | - | chr8_1:24630377-24630396 | None:intergenic | 40.0% | |
| TACACAAGTGGCAATAGGTA+GGG | - | chr8_1:24630388-24630407 | None:intergenic | 40.0% | |
| ATACACAAGTGGCAATAGGT+AGG | - | chr8_1:24630389-24630408 | None:intergenic | 40.0% | |
| ACAGATACACAAGTGGCAAT+AGG | - | chr8_1:24630393-24630412 | None:intergenic | 40.0% | |
| CGCAAGGAAATCAAAGACTA+TGG | + | chr8_1:24630441-24630460 | Msa1186380:CDS | 40.0% | |
| !! | GCACTTCTAAAGCCATTGAA+GGG | + | chr8_1:24630463-24630482 | Msa1186380:CDS | 40.0% |
| !! | CACTTCTAAAGCCATTGAAG+GGG | + | chr8_1:24630464-24630483 | Msa1186380:CDS | 40.0% |
| TAAGCATGGCCAAAGTTGTT+TGG | + | chr8_1:24630491-24630510 | Msa1186380:CDS | 40.0% | |
| !!! | TACTAGTGGAACATCGGTTT+TGG | + | chr8_1:24630530-24630549 | Msa1186380:CDS | 40.0% |
| TTCAACCCTATGTTACGCAA+CGG | - | chr8_1:24630567-24630586 | None:intergenic | 40.0% | |
| AGAGAGAATCTGGAGAGTAA+TGG | + | chr8_1:24630630-24630649 | Msa1186380:CDS | 40.0% | |
| AGAAAAAGGAAGGCTTGATG+AGG | + | chr8_1:24630704-24630723 | Msa1186380:CDS | 40.0% | |
| ! | AAATCAGAAGGTTGCTGCTT+TGG | + | chr8_1:24630761-24630780 | Msa1186380:CDS | 40.0% |
| !! | GAAGAAGGCATTGTCATCTT+TGG | + | chr8_1:24630800-24630819 | Msa1186380:CDS | 40.0% |
| ! | CCTCTTTCCCATTGGATTTT+TGG | - | chr8_1:24630841-24630860 | None:intergenic | 40.0% |
| CCAAAAATCCAATGGGAAAG+AGG | + | chr8_1:24630838-24630857 | Msa1186380:CDS | 40.0% | |
| TCAAACAACCTCTTTCCCAT+TGG | - | chr8_1:24630849-24630868 | None:intergenic | 40.0% | |
| ! | GTTTGAGATAATGGCTGAGA+AGG | + | chr8_1:24630863-24630882 | Msa1186380:CDS | 40.0% |
| AAGTAATCTCTGTTTGGCTG+CGG | + | chr8_1:24630887-24630906 | Msa1186380:CDS | 40.0% | |
| ATTGCTTGAAATTGCCGACA+AGG | + | chr8_1:24630929-24630948 | Msa1186380:CDS | 40.0% | |
| ! | ATGCTTGCTGAAAACTCATG+TGG | + | chr8_1:24631158-24631177 | Msa1186380:CDS | 40.0% |
| ! | CCAGATTTTACTCCGGATTT+CGG | + | chr8_1:24631189-24631208 | Msa1186380:CDS | 40.0% |
| TATGAAGGGTAATGCATTGC+TGG | + | chr8_1:24631535-24631554 | Msa1186380:intron | 40.0% | |
| GGAGTTGCATGAATGAAACA+AGG | - | chr8_1:24631990-24632009 | None:intergenic | 40.0% | |
| TGTTTCATTCATGCAACTCC+TGG | + | chr8_1:24631990-24632009 | Msa1186380:CDS | 40.0% | |
| !! | CATAGACTTTTGGAGACAGT+TGG | - | chr8_1:24632109-24632128 | None:intergenic | 40.0% |
| CATTTGGGTCTACTCTATGA+AGG | + | chr8_1:24632352-24632371 | Msa1186380:intron | 40.0% | |
| ! | TATTGCGGCTTTGATTCACT+TGG | + | chr8_1:24632523-24632542 | Msa1186380:intron | 40.0% |
| ! | TCACTTGGCAAGCCAATTTT+TGG | + | chr8_1:24632538-24632557 | Msa1186380:intron | 40.0% |
| ! | CACTTGGCAAGCCAATTTTT+GGG | + | chr8_1:24632539-24632558 | Msa1186380:intron | 40.0% |
| ! | ACTTGGCAAGCCAATTTTTG+GGG | + | chr8_1:24632540-24632559 | Msa1186380:intron | 40.0% |
| CCATGTAACCTCAAGGTAAA+TGG | - | chr8_1:24632624-24632643 | None:intergenic | 40.0% | |
| CCATTTACCTTGAGGTTACA+TGG | + | chr8_1:24632621-24632640 | Msa1186380:intron | 40.0% | |
| TAACCAACCCTTATCCTACT+AGG | + | chr8_1:24632695-24632714 | Msa1186380:intron | 40.0% | |
| AATCCTAGTAGGATAAGGGT+TGG | - | chr8_1:24632701-24632720 | None:intergenic | 40.0% | |
| ACCCTTATCCTACTAGGATT+TGG | + | chr8_1:24632701-24632720 | Msa1186380:intron | 40.0% | |
| TTATGTGGCATGCAGTAACT+AGG | + | chr8_1:24632814-24632833 | Msa1186380:intron | 40.0% | |
| GAGTGTGTGAAGCAACAAAA+AGG | - | chr8_1:24632930-24632949 | None:intergenic | 40.0% | |
| ACAACCTTATCCCACTAACT+TGG | + | chr8_1:24632983-24633002 | Msa1186380:intron | 40.0% | |
| CAACCTTATCCCACTAACTT+GGG | + | chr8_1:24632984-24633003 | Msa1186380:intron | 40.0% | |
| TAATGTCACTACCCCTATCA+TGG | - | chr8_1:24633057-24633076 | None:intergenic | 40.0% | |
| TCAAGGATGGAGTGCATATT+TGG | + | chr8_1:24633141-24633160 | Msa1186380:CDS | 40.0% | |
| GCTTGTATTCCCTAACCAAA+TGG | + | chr8_1:24633179-24633198 | Msa1186380:three_prime_UTR | 40.0% | |
| CCAAACTCTTCCATTTGGTT+AGG | - | chr8_1:24633192-24633211 | None:intergenic | 40.0% | |
| CCTAACCAAATGGAAGAGTT+TGG | + | chr8_1:24633189-24633208 | Msa1186380:three_prime_UTR | 40.0% | |
| TTCAATTAAGATTGCCGCCG+GGG | + | chr8_1:24628864-24628883 | Msa1186380:intron | 45.0% | |
| !! | ATCTCAGTTTTATACCCCGG+CGG | - | chr8_1:24628881-24628900 | None:intergenic | 45.0% |
| TTAGTTACGGGGAGAACGTT+TGG | + | chr8_1:24629085-24629104 | Msa1186380:intron | 45.0% | |
| ! | ACTTTGAGGGACCAAAATGG+TGG | - | chr8_1:24629273-24629292 | None:intergenic | 45.0% |
| GACAGCGAGTTACACTTTGA+GGG | - | chr8_1:24629286-24629305 | None:intergenic | 45.0% | |
| TGACAGCGAGTTACACTTTG+AGG | - | chr8_1:24629287-24629306 | None:intergenic | 45.0% | |
| TATCCAGTCCTATGCGTTAG+AGG | + | chr8_1:24629618-24629637 | Msa1186380:intron | 45.0% | |
| ATCCAGTCCTATGCGTTAGA+GGG | + | chr8_1:24629619-24629638 | Msa1186380:intron | 45.0% | |
| GTGTGTTAAGAGTCCCACAT+TGG | + | chr8_1:24629642-24629661 | Msa1186380:intron | 45.0% | |
| CCCGACAACCTGTATATAAG+TGG | + | chr8_1:24629681-24629700 | Msa1186380:intron | 45.0% | |
| GACTGCCTCCACTTATATAC+AGG | - | chr8_1:24629692-24629711 | None:intergenic | 45.0% | |
| TTCTCATGCACTTGTGCACA+TGG | - | chr8_1:24629804-24629823 | None:intergenic | 45.0% | |
| GCCTTTCTCAGTGAGCTTTA+AGG | - | chr8_1:24630154-24630173 | None:intergenic | 45.0% | |
| ! | CACTGAGAAAGGCACATCAA+TGG | + | chr8_1:24630161-24630180 | Msa1186380:exon | 45.0% |
| GTAAATTGGAGAGGAGATGC+CGG | - | chr8_1:24630250-24630269 | None:intergenic | 45.0% | |
| AGGCGGAGGTCTATGTAAAT+TGG | - | chr8_1:24630264-24630283 | None:intergenic | 45.0% | |
| GAAATTTGTCGGAGGACAGA+AGG | - | chr8_1:24630300-24630319 | None:intergenic | 45.0% | |
| GCAATAGGTAGGGCAGTATA+AGG | - | chr8_1:24630378-24630397 | None:intergenic | 45.0% | |
| GTGAGTGACAGATACACAAG+TGG | - | chr8_1:24630400-24630419 | None:intergenic | 45.0% | |
| TGTCACTCACAACATCCCTA+TGG | + | chr8_1:24630410-24630429 | Msa1186380:CDS | 45.0% | |
| !! | GGCACTTCTAAAGCCATTGA+AGG | + | chr8_1:24630462-24630481 | Msa1186380:CDS | 45.0% |
| GTTGCGTAACATAGGGTTGA+AGG | + | chr8_1:24630566-24630585 | Msa1186380:CDS | 45.0% | |
| ACAAGGTGGAAGAGAGAATC+TGG | + | chr8_1:24630620-24630639 | Msa1186380:CDS | 45.0% | |
| GCTTGATGAGGAGATGGTTA+GGG | + | chr8_1:24630716-24630735 | Msa1186380:CDS | 45.0% | |
| ! | AGGCATTGTCATCTTTGGAG+AGG | + | chr8_1:24630805-24630824 | Msa1186380:CDS | 45.0% |
| ! | GGCATTGTCATCTTTGGAGA+GGG | + | chr8_1:24630806-24630825 | Msa1186380:CDS | 45.0% |
| CCGAAATCCGGAGTAAAATC+TGG | - | chr8_1:24631192-24631211 | None:intergenic | 45.0% | |
| CGAAGCTTAGAACCGAAATC+CGG | - | chr8_1:24631204-24631223 | None:intergenic | 45.0% | |
| GATCGTAAGTTTGCCGACAT+CGG | + | chr8_1:24631493-24631512 | Msa1186380:CDS | 45.0% | |
| GCATTACCCTTCATACTGCA+TGG | - | chr8_1:24631530-24631549 | None:intergenic | 45.0% | |
| TATCTCTGGTCCTGGAATTG+TGG | + | chr8_1:24631685-24631704 | Msa1186380:CDS | 45.0% | |
| TTCAGTCCATCCACAATTCC+AGG | - | chr8_1:24631698-24631717 | None:intergenic | 45.0% | |
| AATACTTAGGGTTTGCCTCG+TGG | + | chr8_1:24631807-24631826 | Msa1186380:intron | 45.0% | |
| CTTGCTGAAATGAGTTCAGC+CGG | + | chr8_1:24631846-24631865 | Msa1186380:CDS | 45.0% | |
| ATCTTCCTTGGCAAGGTTAC+CGG | - | chr8_1:24631868-24631887 | None:intergenic | 45.0% | |
| CAGTGTAATCTTCCTTGGCA+AGG | - | chr8_1:24631875-24631894 | None:intergenic | 45.0% | |
| TGCAGCAGTGTAATCTTCCT+TGG | - | chr8_1:24631880-24631899 | None:intergenic | 45.0% | |
| TGCAGCAGTGAAAATTGCTG+AGG | + | chr8_1:24631896-24631915 | Msa1186380:CDS | 45.0% | |
| TGCAACTCCTGGAGTTCAAA+TGG | + | chr8_1:24632001-24632020 | Msa1186380:CDS | 45.0% | |
| GTCTACTCTATGAAGGTCCT+GGG | + | chr8_1:24632359-24632378 | Msa1186380:intron | 45.0% | |
| !! | ATTTGTCCGGGTTTTAACCC+AGG | - | chr8_1:24632379-24632398 | None:intergenic | 45.0% |
| !! | GCAAGCCAATTTTTGGGGAA+GGG | + | chr8_1:24632545-24632564 | Msa1186380:intron | 45.0% |
| !! | CAAGCCAATTTTTGGGGAAG+GGG | + | chr8_1:24632546-24632565 | Msa1186380:intron | 45.0% |
| !! | AAGCCAATTTTTGGGGAAGG+GGG | + | chr8_1:24632547-24632566 | Msa1186380:intron | 45.0% |
| AGCTTAGCCATGTAACCTCA+AGG | - | chr8_1:24632631-24632650 | None:intergenic | 45.0% | |
| TACTACTGAGCTAGCATCTC+AGG | + | chr8_1:24632653-24632672 | Msa1186380:intron | 45.0% | |
| CTGAATATTAAAGGGGTGGG+TGG | - | chr8_1:24632861-24632880 | None:intergenic | 45.0% | |
| ! | GTGGGATAAGGTTGTTGTTG+TGG | - | chr8_1:24632978-24632997 | None:intergenic | 45.0% |
| CTTATCCCACTAACTTGGGT+CGG | + | chr8_1:24632988-24633007 | Msa1186380:intron | 45.0% | |
| GACATTATCATAGTCGGACG+TGG | + | chr8_1:24633070-24633089 | Msa1186380:CDS | 45.0% | |
| ATGCACTCCATCCTTGAAGA+CGG | - | chr8_1:24633138-24633157 | None:intergenic | 45.0% | |
| CACACCCAAACTCTTCCATT+TGG | - | chr8_1:24633197-24633216 | None:intergenic | 45.0% | |
| !! | CATTAAAATAAAAAATATTA+TGG | + | chr8_1:24632439-24632458 | Msa1186380:intron | 5.0% |
| !! | TTAAAATAAAAAATATTATG+GGG | + | chr8_1:24632441-24632460 | Msa1186380:intron | 5.0% |
| GGTGCAAACTTATGCAGCAG+CGG | + | chr8_1:24628595-24628614 | Msa1186380:five_prime_UTR | 50.0% | |
| ATGCAGCAGCGGCAATAACA+AGG | + | chr8_1:24628606-24628625 | Msa1186380:five_prime_UTR | 50.0% | |
| TCAAAGCTATCGGGTCACTC+AGG | + | chr8_1:24629583-24629602 | Msa1186380:intron | 50.0% | |
| TCCAGTCCTATGCGTTAGAG+GGG | + | chr8_1:24629620-24629639 | Msa1186380:intron | 50.0% | |
| AACACACCCCTCTAACGCAT+AGG | - | chr8_1:24629629-24629648 | None:intergenic | 50.0% | |
| GTGCACAAGTGCATGAGAAG+TGG | + | chr8_1:24629805-24629824 | Msa1186380:intron | 50.0% | |
| TATAAGGGACACCGCAGACA+AGG | - | chr8_1:24630362-24630381 | None:intergenic | 50.0% | |
| AGGAAGGCTTGATGAGGAGA+TGG | + | chr8_1:24630710-24630729 | Msa1186380:CDS | 50.0% | |
| GGCTTGATGAGGAGATGGTT+AGG | + | chr8_1:24630715-24630734 | Msa1186380:CDS | 50.0% | |
| !! | TTTCGGTTCTAAGCTTCGCG+CGG | + | chr8_1:24631206-24631225 | Msa1186380:CDS | 50.0% |
| TGCCGACATCGGTAATACCT+CGG | + | chr8_1:24631504-24631523 | Msa1186380:CDS | 50.0% | |
| GCTCACATTATCTCTGGTCC+TGG | + | chr8_1:24631677-24631696 | Msa1186380:CDS | 50.0% | |
| TCTGGTCCTGGAATTGTGGA+TGG | + | chr8_1:24631689-24631708 | Msa1186380:CDS | 50.0% | |
| TTAGGGTTTGCCTCGTGGAA+AGG | + | chr8_1:24631812-24631831 | Msa1186380:intron | 50.0% | |
| TAGGGTTTGCCTCGTGGAAA+GGG | + | chr8_1:24631813-24631832 | Msa1186380:intron | 50.0% | |
| AGCAACAAACCCTTTCCACG+AGG | - | chr8_1:24631825-24631844 | None:intergenic | 50.0% | |
| CCTGGAGTTCAAATGGCGAT+CGG | + | chr8_1:24632008-24632027 | Msa1186380:CDS | 50.0% | |
| GGTCTACTCTATGAAGGTCC+TGG | + | chr8_1:24632358-24632377 | Msa1186380:intron | 50.0% | |
| GAAGGTCCTGGGTTAAAACC+CGG | + | chr8_1:24632370-24632389 | Msa1186380:intron | 50.0% | |
| !! | GGCAAGCCAATTTTTGGGGA+AGG | + | chr8_1:24632544-24632563 | Msa1186380:intron | 50.0% |
| TCTCCCCCTTCCCCAAAAAT+TGG | - | chr8_1:24632553-24632572 | None:intergenic | 50.0% | |
| GGCATGCAGTAACTAGGTTG+TGG | + | chr8_1:24632820-24632839 | Msa1186380:intron | 50.0% | |
| CGACCCAAGTTAGTGGGATA+AGG | - | chr8_1:24632990-24633009 | None:intergenic | 50.0% | |
| GATAGCCGACCCAAGTTAGT+GGG | - | chr8_1:24632996-24633015 | None:intergenic | 50.0% | |
| AGATAGCCGACCCAAGTTAG+TGG | - | chr8_1:24632997-24633016 | None:intergenic | 50.0% | |
| GCGAATACCGTCTTCAAGGA+TGG | + | chr8_1:24633128-24633147 | Msa1186380:CDS | 50.0% | |
| ACCCCTCTAACGCATAGGAC+TGG | - | chr8_1:24629624-24629643 | None:intergenic | 55.0% | |
| CCTTGCGGCGCATAACCATA+GGG | - | chr8_1:24630428-24630447 | None:intergenic | 55.0% | |
| TCCTTGCGGCGCATAACCAT+AGG | - | chr8_1:24630429-24630448 | None:intergenic | 55.0% | |
| CTGCGCCGTTGCGTAACATA+GGG | + | chr8_1:24630559-24630578 | Msa1186380:CDS | 55.0% | |
| CTCTGTTTGGCTGCGGATGT+TGG | + | chr8_1:24630894-24630913 | Msa1186380:CDS | 55.0% | |
| ! | GGCCGAGGTATTACCGATGT+CGG | - | chr8_1:24631509-24631528 | None:intergenic | 55.0% |
| ACCTCGGCCATGCAGTATGA+AGG | + | chr8_1:24631520-24631539 | Msa1186380:CDS | 55.0% | |
| CCTCGGCCATGCAGTATGAA+GGG | + | chr8_1:24631521-24631540 | Msa1186380:CDS | 55.0% | |
| TTCAGCCGGTAACCTTGCCA+AGG | + | chr8_1:24631860-24631879 | Msa1186380:CDS | 55.0% | |
| TCAATCCAGCGTCGTGGTCT+AGG | + | chr8_1:24631952-24631971 | Msa1186380:CDS | 55.0% | |
| CAATCCAGCGTCGTGGTCTA+GGG | + | chr8_1:24631953-24631972 | Msa1186380:CDS | 55.0% | |
| CCGATCGCCATTTGAACTCC+AGG | - | chr8_1:24632011-24632030 | None:intergenic | 55.0% | |
| GGAGTTCAAATGGCGATCGG+TGG | + | chr8_1:24632011-24632030 | Msa1186380:CDS | 55.0% | |
| CAAATGGCGATCGGTGGTGA+TGG | + | chr8_1:24632017-24632036 | Msa1186380:CDS | 55.0% | |
| !! | GCGATCGGTGGTGATGGTTT+GGG | + | chr8_1:24632023-24632042 | Msa1186380:CDS | 55.0% |
| !! | CGATCGGTGGTGATGGTTTG+GGG | + | chr8_1:24632024-24632043 | Msa1186380:CDS | 55.0% |
| GCTCGCGAATACCGTCTTCA+AGG | + | chr8_1:24633124-24633143 | Msa1186380:CDS | 55.0% | |
| CCCTATGGTTATGCGCCGCA+AGG | + | chr8_1:24630425-24630444 | Msa1186380:CDS | 60.0% | |
| GCTGCGCCGTTGCGTAACAT+AGG | + | chr8_1:24630558-24630577 | Msa1186380:CDS | 60.0% | |
| CCCTTCATACTGCATGGCCG+AGG | - | chr8_1:24631524-24631543 | None:intergenic | 60.0% | |
| TCTCGGTCAATCCAGCGTCG+TGG | + | chr8_1:24631946-24631965 | Msa1186380:CDS | 60.0% | |
| !! | GGCGATCGGTGGTGATGGTT+TGG | + | chr8_1:24632022-24632041 | Msa1186380:CDS | 60.0% |
| TATTCGCGAGCTGCTGCAGC+CGG | - | chr8_1:24633115-24633134 | None:intergenic | 60.0% | |
| AGTGCCCTAGACCACGACGC+TGG | - | chr8_1:24631960-24631979 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 24628552 | 24633438 | 24628552 | ID=Msa1186380;Name=Msa1186380 |
| chr8_1 | mRNA | 24628552 | 24633438 | 24628552 | ID=Msa1186380-mRNA-1;Parent=Msa1186380;Name=Msa1186380-mRNA-1;_AED=0.19;_eAED=0.19;_QI=117|0.83|0.85|1|0.83|0.71|7|261|475 |
| chr8_1 | exon | 24628552 | 24628627 | 24628552 | ID=Msa1186380-mRNA-1:exon:8920;Parent=Msa1186380-mRNA-1 |
| chr8_1 | exon | 24630139 | 24630950 | 24630139 | ID=Msa1186380-mRNA-1:exon:8921;Parent=Msa1186380-mRNA-1 |
| chr8_1 | exon | 24631144 | 24631227 | 24631144 | ID=Msa1186380-mRNA-1:exon:8922;Parent=Msa1186380-mRNA-1 |
| chr8_1 | exon | 24631460 | 24631542 | 24631460 | ID=Msa1186380-mRNA-1:exon:8923;Parent=Msa1186380-mRNA-1 |
| chr8_1 | exon | 24631637 | 24631724 | 24631637 | ID=Msa1186380-mRNA-1:exon:8924;Parent=Msa1186380-mRNA-1 |
| chr8_1 | exon | 24631816 | 24632088 | 24631816 | ID=Msa1186380-mRNA-1:exon:8925;Parent=Msa1186380-mRNA-1 |
| chr8_1 | exon | 24633049 | 24633438 | 24633049 | ID=Msa1186380-mRNA-1:exon:8926;Parent=Msa1186380-mRNA-1 |
| chr8_1 | five_prime_UTR | 24628552 | 24628627 | 24628552 | ID=Msa1186380-mRNA-1:five_prime_utr;Parent=Msa1186380-mRNA-1 |
| chr8_1 | five_prime_UTR | 24630139 | 24630179 | 24630139 | ID=Msa1186380-mRNA-1:five_prime_utr;Parent=Msa1186380-mRNA-1 |
| chr8_1 | CDS | 24630180 | 24630950 | 24630180 | ID=Msa1186380-mRNA-1:cds;Parent=Msa1186380-mRNA-1 |
| chr8_1 | CDS | 24631144 | 24631227 | 24631144 | ID=Msa1186380-mRNA-1:cds;Parent=Msa1186380-mRNA-1 |
| chr8_1 | CDS | 24631460 | 24631542 | 24631460 | ID=Msa1186380-mRNA-1:cds;Parent=Msa1186380-mRNA-1 |
| chr8_1 | CDS | 24631637 | 24631724 | 24631637 | ID=Msa1186380-mRNA-1:cds;Parent=Msa1186380-mRNA-1 |
| chr8_1 | CDS | 24631816 | 24632088 | 24631816 | ID=Msa1186380-mRNA-1:cds;Parent=Msa1186380-mRNA-1 |
| chr8_1 | CDS | 24633049 | 24633177 | 24633049 | ID=Msa1186380-mRNA-1:cds;Parent=Msa1186380-mRNA-1 |
| chr8_1 | three_prime_UTR | 24633178 | 24633438 | 24633178 | ID=Msa1186380-mRNA-1:three_prime_utr;Parent=Msa1186380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
