AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1187820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1187820 MtrunA17_Chr3g0142001 97.068 307 9 0 1 307 427 733 0.0 619
Msa1187820 MtrunA17_Chr1g0155701 75.987 304 72 1 1 303 427 730 5.48e-168 484
Msa1187820 MtrunA17_Chr8g0372421 64.821 307 107 1 1 306 427 733 7.89e-145 428
Msa1187820 MtrunA17_Chr5g0404841 65.472 307 104 2 1 306 425 730 1.74e-137 409
Msa1187820 MtrunA17_Chr2g0299161 55.482 301 132 2 1 300 427 726 1.19e-115 349
Msa1187820 MtrunA17_Chr1g0152571 54.485 301 135 2 1 300 431 730 8.62e-115 347
Msa1187820 MtrunA17_Chr8g0342001 54.902 306 133 4 3 306 428 730 4.24e-108 333
Msa1187820 MtrunA17_Chr2g0330291 55.229 306 132 4 3 306 431 733 1.43e-106 329
Msa1187820 MtrunA17_Chr3g0130711 41.254 303 171 5 8 306 441 740 6.41e-81 259
Msa1187820 MtrunA17_Chr2g0326451 42.857 322 154 7 6 306 125 437 3.87e-80 253
Msa1187820 MtrunA17_Chr4g0029301 45.263 285 143 5 26 306 457 732 2.34e-75 246
Msa1187820 MtrunA17_Chr2g0326481 42.492 313 150 6 15 306 423 726 1.40e-72 239
Msa1187820 MtrunA17_Chr5g0408371 39.661 295 161 6 19 306 451 735 1.20e-64 217
Msa1187820 MtrunA17_Chr8g0378221 41.118 304 165 7 9 307 491 785 2.03e-64 218
Msa1187820 MtrunA17_Chr5g0406921 40.351 285 161 4 26 306 459 738 1.56e-63 214
Msa1187820 MtrunA17_Chr4g0071281 40.614 293 120 5 1 291 3 243 1.93e-62 198
Msa1187820 MtrunA17_Chr2g0301001 37.838 296 175 4 18 306 448 741 1.75e-61 209
Msa1187820 MtrunA17_Chr3g0077531 38.361 305 169 8 7 301 438 733 2.17e-59 202
Msa1187820 MtrunA17_Chr4g0037031 35.959 292 159 5 8 297 446 711 1.25e-54 190
Msa1187820 MtrunA17_Chr3g0124931 37.329 292 148 6 5 296 431 687 2.37e-54 187
Msa1187820 MtrunA17_Chr3g0130721 35.540 287 158 4 10 296 439 698 2.36e-53 185
Msa1187820 MtrunA17_Chr3g0145581 35.197 304 154 9 2 297 439 707 7.98e-52 182
Msa1187820 MtrunA17_Chr2g0326521 42.857 224 96 6 88 306 4 200 3.51e-50 168
Msa1187820 MtrunA17_Chr2g0307981 33.218 289 150 10 8 288 38 291 4.26e-35 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1187820 AT1G45130.2 67.797 295 95 0 8 302 359 653 2.08e-143 419
Msa1187820 AT1G45130.1 67.797 295 95 0 8 302 438 732 2.02e-142 419
Msa1187820 AT4G36360.1 63.312 308 112 1 1 307 432 739 8.78e-142 421
Msa1187820 AT4G36360.2 63.312 308 112 1 1 307 432 739 9.23e-142 421
Msa1187820 AT3G13750.1 55.556 306 131 4 3 306 437 739 3.34e-110 339
Msa1187820 AT4G26140.1 51.827 301 142 3 1 300 428 726 1.77e-109 334
Msa1187820 AT3G52840.1 52.492 301 141 2 1 300 426 725 1.06e-108 332
Msa1187820 AT3G52840.2 52.492 301 141 2 1 300 480 779 2.49e-108 332
Msa1187820 AT5G56870.1 53.821 301 136 3 1 300 426 724 2.60e-108 331
Msa1187820 AT4G26140.7 47.853 326 142 4 1 300 428 751 7.03e-104 320
Msa1187820 AT4G26140.9 44.521 292 134 4 1 266 428 717 6.31e-84 267
Msa1187820 AT5G63810.1 42.765 311 165 5 1 301 431 738 1.23e-80 259
Msa1187820 AT2G28470.2 43.836 292 153 5 12 299 445 729 4.89e-76 249
Msa1187820 AT2G28470.4 43.836 292 153 5 12 299 445 729 4.89e-76 249
Msa1187820 AT2G28470.1 43.836 292 153 5 12 299 451 735 5.20e-76 249
Msa1187820 AT2G28470.3 43.836 292 153 5 12 299 451 735 5.20e-76 249
Msa1187820 AT5G20710.2 39.617 313 177 7 3 307 226 534 1.47e-66 219
Msa1187820 AT5G20710.1 39.617 313 177 7 3 307 431 739 1.84e-65 220
Msa1187820 AT2G32810.2 42.662 293 156 7 9 296 470 755 1.31e-64 218
Msa1187820 AT2G32810.1 42.662 293 156 7 9 296 470 755 1.44e-64 218
Msa1187820 AT1G77410.2 42.414 290 131 8 10 296 330 586 6.54e-62 209
Msa1187820 AT1G77410.4 42.414 290 131 8 10 296 330 586 6.54e-62 209
Msa1187820 AT1G77410.3 42.414 290 131 8 10 296 441 697 2.55e-61 209
Msa1187820 AT1G77410.1 42.414 290 131 8 10 296 436 692 2.58e-61 208
Msa1187820 AT5G63800.1 39.931 288 146 5 9 296 442 702 1.34e-60 205
Msa1187820 AT2G28470.5 42.023 257 138 5 12 264 451 700 3.51e-59 201
Msa1187820 AT4G26140.3 45.226 199 107 2 1 199 426 622 1.72e-55 190
Msa1187820 AT4G26140.2 45.226 199 107 2 1 199 426 622 1.72e-55 190
Msa1187820 AT4G26140.6 45.226 199 107 2 1 199 428 624 1.97e-55 190
Msa1187820 AT2G16730.1 37.500 256 136 4 32 286 476 708 2.41e-51 181
Msa1187820 AT4G35010.1 33.803 284 159 6 5 286 449 705 3.50e-47 169
Msa1187820 AT4G38590.1 34.035 285 158 6 8 289 382 639 1.37e-46 167
Msa1187820 AT1G31740.1 34.812 293 143 7 3 291 429 677 1.03e-41 154
Msa1187820 AT4G38590.2 32.632 285 158 7 8 289 450 703 2.76e-41 153
Msa1187820 AT4G26140.8 44.715 123 67 1 1 123 428 549 2.83e-31 123
Msa1187820 AT4G26140.4 37.162 148 67 2 1 123 428 574 2.53e-26 109
Msa1187820 AT4G26140.5 37.162 148 67 2 1 123 428 574 2.53e-26 109
Msa1187820 AT2G04060.1 30.000 220 118 4 14 233 132 315 1.94e-19 88.6

Find 225 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAAGGTTTACAGATTT+TGG 0.145312 8_1:-27740437 Msa1187820:intron
TCCTTCAAATGACTATATTT+TGG 0.162196 8_1:+27739799 None:intergenic
CCTAAACTGGGCTGCAAATA+TGG 0.190750 8_1:-27740873 Msa1187820:five_prime_UTR
TGCAATTCCTGCAACTATTC+TGG 0.212314 8_1:-27737669 Msa1187820:CDS
CAAAGAAGAATTCTAATTTC+TGG 0.218304 8_1:-27742028 Msa1187820:five_prime_UTR
TAAATTACAAATGATATTCT+AGG 0.219127 8_1:+27736733 None:intergenic
CAGAGAAGTTGCACATTTAA+TGG 0.237000 8_1:-27738434 Msa1187820:CDS
TTATAGACACTTATGTCTTC+TGG 0.248647 8_1:-27741840 Msa1187820:five_prime_UTR
GGCTTTGGACCTAGGAAGTA+TGG 0.252554 8_1:-27737760 Msa1187820:CDS
TTCTAGATTGAGAACGAATA+TGG 0.253847 8_1:-27740935 Msa1187820:intron
CTGGTCATGCATACCTAAAC+TGG 0.257224 8_1:-27740886 Msa1187820:five_prime_UTR
GTTGAACAGGTTGGACTAAA+AGG 0.259985 8_1:-27737997 Msa1187820:intron
GTTCTTCAAACACTACTATT+AGG 0.264193 8_1:+27737000 None:intergenic
CATACTTCAGGGGTGCTTCT+TGG 0.275672 8_1:+27741992 None:intergenic
AAAAGGAGAGGCTGTGAATT+TGG 0.279573 8_1:-27737980 Msa1187820:CDS
CAGAAATTAGAATTCTTCTT+TGG 0.285761 8_1:+27742029 None:intergenic
ATCCGTTCTGAAGCTTATTC+CGG 0.289249 8_1:+27741460 None:intergenic
TGAACTGGTCGCTGGTGAAT+TGG 0.296094 8_1:+27740410 None:intergenic
CATACCTGAGAGAGAATTAT+TGG 0.300613 8_1:+27741250 None:intergenic
ACCAAGGCTACCCTCGTTTC+AGG 0.301207 8_1:+27736871 None:intergenic
CCATATTTGCAGCCCAGTTT+AGG 0.306276 8_1:+27740873 None:intergenic
CTAGGCTTATATGGTTTATT+CGG 0.307971 8_1:+27740576 None:intergenic
GAATCCTTGGAAAATTTCTT+TGG 0.309226 8_1:-27736970 Msa1187820:CDS
GTTCATGTGTGGTGTGAAAA+TGG 0.313581 8_1:-27742260 Msa1187820:five_prime_UTR
AAATGAGTCCTGTCGATTCT+AGG 0.326359 8_1:-27739105 Msa1187820:CDS
GCTCCAGCATGTAGATTAAC+TGG 0.327345 8_1:+27738410 None:intergenic
CAACCAAGTTGGCACTTTGC+AGG 0.328605 8_1:+27737636 None:intergenic
TTCTTACCATATTCATCAAT+TGG 0.333167 8_1:+27740099 None:intergenic
GTCCACATGCTAGGCTTATA+TGG 0.334733 8_1:+27740567 None:intergenic
GCATAATAAATGGTCTTATC+AGG 0.334788 8_1:-27738109 Msa1187820:intron
CAAGCCGGTCACAACTAAAA+TGG 0.339053 8_1:-27737903 Msa1187820:CDS
AAGGGCCAAGTATGGATAAA+TGG 0.348408 8_1:-27737735 Msa1187820:CDS
TGCAAATATGGCTGTTGGAT+TGG 0.363301 8_1:-27740861 Msa1187820:five_prime_UTR
GACAAAGCATAGGAAGATAT+TGG 0.368369 8_1:-27737713 Msa1187820:CDS
CAGCGTGACTGTCGGATTGC+CGG 0.369336 8_1:-27738369 Msa1187820:intron
AGAGAAGTTGCACATTTAAT+GGG 0.370621 8_1:-27738433 Msa1187820:CDS
TGAAAAGCTGTTTCAGTCTC+AGG 0.371686 8_1:-27741278 Msa1187820:five_prime_UTR
TCCGTTCTGAAGCTTATTCC+GGG 0.373173 8_1:+27741461 None:intergenic
AGGATCTGTCGCATAATAAA+TGG 0.374726 8_1:-27738119 Msa1187820:CDS
GATGCTCCAATTGATGAATA+TGG 0.376118 8_1:-27740105 Msa1187820:intron
GATCCTACTGTTACACCATT+AGG 0.383098 8_1:-27739730 Msa1187820:five_prime_UTR
TATATAAAATCATGGTGGTT+TGG 0.385322 8_1:+27736766 None:intergenic
AAAGAGCTCACCACAGGATC+CGG 0.390775 8_1:+27740797 None:intergenic
AACATCAAGACCACCATGTT+TGG 0.392980 8_1:+27741861 None:intergenic
TCAAGACCATGGAGCACAAC+TGG 0.398051 8_1:+27738153 None:intergenic
TTCCACTCAGCGCATATATA+AGG 0.400728 8_1:+27741607 None:intergenic
ACCTGCTGAAGTGTTCCTAA+TGG 0.401362 8_1:+27739715 None:intergenic
CACTATGTTTAGGTTTGGTC+AGG 0.404037 8_1:-27739825 Msa1187820:intron
AAGAACTTGGCGGGAATCCT+TGG 0.405390 8_1:-27736983 Msa1187820:CDS
TTTGTATGTAGCTTCACTTA+GGG 0.406029 8_1:-27736821 Msa1187820:three_prime_UTR
AAGGAAGATATGATTTAGTA+AGG 0.409592 8_1:-27741681 Msa1187820:five_prime_UTR
TGAGCATGCTTTGGTTTCTT+CGG 0.409709 8_1:-27739752 Msa1187820:five_prime_UTR
GAGACACCAGTGACTATCTA+TGG 0.410432 8_1:-27738988 Msa1187820:CDS
GCAATCAGGAAGGATGCTTA+TGG 0.413796 8_1:+27739459 None:intergenic
GTTTGTATGTAGCTTCACTT+AGG 0.414133 8_1:-27736822 Msa1187820:three_prime_UTR
ACTACTATTAGGTTCTTTGT+TGG 0.415891 8_1:+27737011 None:intergenic
GATTGGGAACAGGAGTCCCT+TGG 0.418192 8_1:-27740844 Msa1187820:five_prime_UTR
TATAGACACTTATGTCTTCT+GGG 0.418303 8_1:-27741839 Msa1187820:five_prime_UTR
ATATGCGCTGAGTGGAACTT+TGG 0.418404 8_1:-27741601 Msa1187820:five_prime_UTR
CTACAGATTAATTCATGTAA+TGG 0.419307 8_1:-27740621 Msa1187820:intron
CTTCTCTAGACGAAAGTTCA+AGG 0.419593 8_1:-27739051 Msa1187820:CDS
ATGGGGTCTCAGCTAATGAT+TGG 0.421674 8_1:-27737948 Msa1187820:CDS
GAACTGGTCGCTGGTGAATT+GGG 0.422236 8_1:+27740411 None:intergenic
AACGGATAACGGACCTTTCA+AGG 0.423232 8_1:-27741444 Msa1187820:intron
TACATTTGCAGTATTAAATA+CGG 0.423954 8_1:+27739429 None:intergenic
CCGTCCATGTGTTTGCTAAC+GGG 0.424113 8_1:-27738578 Msa1187820:CDS
CAAGCGATGTGAGCATGCTT+TGG 0.424324 8_1:-27739761 Msa1187820:five_prime_UTR
GTATGGGTAAGGGCCAAGTA+TGG 0.425767 8_1:-27737743 Msa1187820:CDS
GTATTCTCTGCAGGAACTAC+AGG 0.432210 8_1:-27739568 Msa1187820:five_prime_UTR
GCAATTCCTGCAACTATTCT+GGG 0.432599 8_1:-27737668 Msa1187820:CDS
CTGTCGATTCTAGGTTCTCA+TGG 0.435814 8_1:-27739096 Msa1187820:CDS
GCAAATATGGCTGTTGGATT+GGG 0.435937 8_1:-27740860 Msa1187820:five_prime_UTR
AAGTTCACTCGCGAATTCTC+TGG 0.443666 8_1:-27736899 Msa1187820:three_prime_UTR
GAATGTCCCAGAATAGTTGC+AGG 0.446858 8_1:+27737662 None:intergenic
TTTGTCCATTTATCCATACT+TGG 0.449902 8_1:+27737730 None:intergenic
ACGAATATGGACCAGAGAGC+GGG 0.449957 8_1:-27740922 Msa1187820:five_prime_UTR
AATTCACCAGCGACCAGTTC+AGG 0.450278 8_1:-27740408 Msa1187820:five_prime_UTR
GGCACATACTTCAACCAAAC+AGG 0.450745 8_1:+27741482 None:intergenic
CAGGCTCATGTATTCTCTGC+AGG 0.451671 8_1:-27739577 Msa1187820:five_prime_UTR
GCAGACTGCACATTAATGTT+GGG 0.452299 8_1:+27738609 None:intergenic
AATACGGAAGTTATGCAATC+AGG 0.453209 8_1:+27739445 None:intergenic
ACAATGTTGTTACTACTACT+AGG 0.454031 8_1:+27742116 None:intergenic
AGCGGGGCAATGGGAGCTGC+TGG 0.456168 8_1:-27740905 Msa1187820:five_prime_UTR
GGGCAACGGACCATTGGCTT+TGG 0.456998 8_1:-27737775 Msa1187820:CDS
TACCATGGAGGAACCAACTT+TGG 0.460352 8_1:-27740171 Msa1187820:five_prime_UTR
TCTAAAGTCTGCTGCTACTG+TGG 0.461055 8_1:-27739518 Msa1187820:five_prime_UTR
ATAAGGTCCAATGCGGAGAT+TGG 0.463256 8_1:+27741624 None:intergenic
TGAATTTGGTATCACCCAAT+GGG 0.463630 8_1:-27737966 Msa1187820:CDS
GCCAATGGTCCGTTGCCCTC+AGG 0.467927 8_1:+27737780 None:intergenic
AGACCTGCAAAGTGCCAACT+TGG 0.468347 8_1:-27737639 Msa1187820:CDS
AACATTAATGTGCAGTCTGC+AGG 0.468569 8_1:-27738606 Msa1187820:CDS
ACGGACAAAGGTGAAACTTA+AGG 0.469754 8_1:+27740209 None:intergenic
TATTGGATGGCTTATGCAAA+GGG 0.471536 8_1:-27737696 Msa1187820:CDS
TTATTATGCGACAGATCCTT+CGG 0.472013 8_1:+27738123 None:intergenic
ATTAAGGGTATTACATTGCC+AGG 0.472942 8_1:+27741799 None:intergenic
ATGGCTGTTGGATTGGGAAC+AGG 0.475126 8_1:-27740854 Msa1187820:five_prime_UTR
AGTTGCTCGTTTCATTCAGA+AGG 0.475641 8_1:-27740372 Msa1187820:five_prime_UTR
CATTATGAAACATGGGAGAC+GGG 0.480780 8_1:-27738186 Msa1187820:CDS
GGACCAGAGAGCGGGGCAAT+GGG 0.481155 8_1:-27740914 Msa1187820:five_prime_UTR
CTTTATGCCAATCTCCGCAT+TGG 0.482995 8_1:-27741631 Msa1187820:five_prime_UTR
TATGCGCTGAGTGGAACTTT+GGG 0.484699 8_1:-27741600 Msa1187820:intron
TGCAGACTGCACATTAATGT+TGG 0.486330 8_1:+27738608 None:intergenic
GCCTGAGGGCAACGGACCAT+TGG 0.487207 8_1:-27737781 Msa1187820:CDS
GGACCATTGGCTTTGGACCT+AGG 0.487914 8_1:-27737768 Msa1187820:CDS
AGTTCAAGGATTACAGCTGC+TGG 0.488592 8_1:-27739037 Msa1187820:CDS
GGTGTAGAGGAATTCCTGTT+TGG 0.489840 8_1:-27741496 Msa1187820:intron
CAATGTTGTTACTACTACTA+GGG 0.491765 8_1:+27742117 None:intergenic
AGAAAGTCTCTTCTCATCAA+TGG 0.493105 8_1:-27742052 Msa1187820:five_prime_UTR
GCAAATGCTAGATCCTGAAC+TGG 0.493575 8_1:+27740395 None:intergenic
TCATAGCTTGTAGTAATGAA+TGG 0.494227 8_1:+27740132 None:intergenic
ATTGGGAACAGGAGTCCCTT+GGG 0.494679 8_1:-27740843 Msa1187820:five_prime_UTR
TCTTCTTCTTCTTTGAGACA+TGG 0.494763 8_1:-27742164 Msa1187820:five_prime_UTR
ACATGGGAGACGGGGATCAC+TGG 0.494793 8_1:-27738177 Msa1187820:CDS
ACTGGTCCAGTTGTGCTCCA+TGG 0.498783 8_1:-27738159 Msa1187820:CDS
AGAAGATAGATCTTCATCAT+AGG 0.502038 8_1:+27739069 None:intergenic
TGGTCCAATAATTCTCTCTC+AGG 0.502761 8_1:-27741254 Msa1187820:intron
ACCAACTTTGGACGATCAGC+TGG 0.503084 8_1:-27740159 Msa1187820:five_prime_UTR
TGGGTTTAGGCTGCAATGCA+AGG 0.504866 8_1:-27741334 Msa1187820:intron
TCATTAGCTGAGACCCCATT+GGG 0.506426 8_1:+27737952 None:intergenic
GGCCCTTACCCATACTTCCT+AGG 0.508915 8_1:+27737751 None:intergenic
TGGACCAGAGAGCGGGGCAA+TGG 0.509550 8_1:-27740915 Msa1187820:five_prime_UTR
GATGTTCATGAACCATCTCC+TGG 0.509570 8_1:-27741817 Msa1187820:five_prime_UTR
ATAGTAGTGTTTGAAGAACT+TGG 0.510118 8_1:-27736996 Msa1187820:CDS
GGACCTAGGAAGTATGGGTA+AGG 0.511953 8_1:-27737754 Msa1187820:CDS
AAGGGTCGGCATTTGGGACG+AGG 0.513971 8_1:-27738460 Msa1187820:CDS
GTTGGCTTTAGCCATGACCT+TGG 0.514639 8_1:+27737029 None:intergenic
GGTATTACATTGCCAGGAGA+TGG 0.515365 8_1:+27741805 None:intergenic
AAGAGCTCACCACAGGATCC+GGG 0.516437 8_1:+27740798 None:intergenic
CTAGCATGTGGACGGAGTCT+TGG 0.516868 8_1:-27740557 Msa1187820:five_prime_UTR
GAAAATTACAATCTTAAGAC+GGG 0.517094 8_1:-27736670 Msa1187820:three_prime_UTR
GCCGTCCATGTGTTTGCTAA+CGG 0.518416 8_1:-27738579 Msa1187820:CDS
TGGGGTCTCAGCTAATGATT+GGG 0.518992 8_1:-27737947 Msa1187820:CDS
ATAAGCTTCAGAACGGATAA+CGG 0.519465 8_1:-27741455 Msa1187820:five_prime_UTR
ACCATTAGGAACACTTCAGC+AGG 0.524150 8_1:-27739716 Msa1187820:intron
ATCATTAGCTGAGACCCCAT+TGG 0.526712 8_1:+27737951 None:intergenic
GGCACTATGACTTGCCTCCA+TGG 0.528134 8_1:-27739483 Msa1187820:five_prime_UTR
GCCAAAATATAGTCATTTGA+AGG 0.528138 8_1:-27739800 Msa1187820:five_prime_UTR
CAAGACTCCGTCCACATGCT+AGG 0.528557 8_1:+27740558 None:intergenic
GGTGCTTCTTGGATAGTGAA+TGG 0.529489 8_1:+27742003 None:intergenic
GTGAATTTGGTATCACCCAA+TGG 0.529765 8_1:-27737967 Msa1187820:CDS
GCGACAGATCCTTCGGTCCA+TGG 0.535103 8_1:+27738130 None:intergenic
TGGGCTGCAAATATGGCTGT+TGG 0.538441 8_1:-27740866 Msa1187820:five_prime_UTR
TAGTGTTTGAAGAACTTGGC+GGG 0.545727 8_1:-27736992 Msa1187820:CDS
GCAAAGTGCCAACTTGGTTG+TGG 0.547646 8_1:-27737633 Msa1187820:CDS
TCTGGCTTTGCCTGAAACGA+GGG 0.548463 8_1:-27736881 Msa1187820:three_prime_UTR
TCTCCCATGTTTCATAATGT+CGG 0.551448 8_1:+27738190 None:intergenic
CTCTGGCTTTGCCTGAAACG+AGG 0.552043 8_1:-27736882 Msa1187820:three_prime_UTR
ACCAGCTGATCGTCCAAAGT+TGG 0.553003 8_1:+27740158 None:intergenic
AAAATTGTACCATCTTTGAG+TGG 0.553803 8_1:+27737605 None:intergenic
GGGCCAGTTAATCTACATGC+TGG 0.558839 8_1:-27738413 Msa1187820:CDS
AGAAAATTACAATCTTAAGA+CGG 0.559403 8_1:-27736671 Msa1187820:three_prime_UTR
TTTAACACGCCTGAGGGCAA+CGG 0.562193 8_1:-27737789 Msa1187820:CDS
TATGTACCATAGATAGTCAC+TGG 0.563523 8_1:+27738982 None:intergenic
GCTCTTCTCAGCGTGACTGT+CGG 0.563832 8_1:-27738377 Msa1187820:CDS
GGTACTATAATTTATCATAA+CGG 0.563931 8_1:+27740190 None:intergenic
CATGAGAACCTAGAATCGAC+AGG 0.568957 8_1:+27739097 None:intergenic
GGACGGAGTCTTGGAGTGGC+TGG 0.569999 8_1:-27740548 Msa1187820:intron
GTTCCTAATGGTGTAACAGT+AGG 0.571055 8_1:+27739727 None:intergenic
GGTATCATGTTCCAAGGTCA+TGG 0.571810 8_1:-27737040 Msa1187820:CDS
AAATTGTACCATCTTTGAGT+GGG 0.574497 8_1:+27737606 None:intergenic
GCTCGTTTCATTCAGAAGGG+TGG 0.575864 8_1:-27740368 Msa1187820:five_prime_UTR
CTAGATCCTGAACTGGTCGC+TGG 0.577176 8_1:+27740402 None:intergenic
TCATCAGAATCATTTCTTCG+AGG 0.581779 8_1:-27738642 Msa1187820:CDS
GTGCTCCATGGTCTTGACCA+TGG 0.585112 8_1:-27738147 Msa1187820:CDS
GCTTTGGACCTAGGAAGTAT+GGG 0.586075 8_1:-27737759 Msa1187820:CDS
TTGTATGTAGCTTCACTTAG+GGG 0.586985 8_1:-27736820 Msa1187820:three_prime_UTR
GTCCAAAGTTGGTTCCTCCA+TGG 0.588793 8_1:+27740169 None:intergenic
GTTGCTCGTTTCATTCAGAA+GGG 0.589466 8_1:-27740371 Msa1187820:five_prime_UTR
ATATTGGATGGCTTATGCAA+AGG 0.589804 8_1:-27737697 Msa1187820:CDS
TTGGCCGACATTATGAAACA+TGG 0.592890 8_1:-27738194 Msa1187820:CDS
TCAGAATCATTTCTTCGAGG+AGG 0.593391 8_1:-27738639 Msa1187820:CDS
TGGATAAATGGACAAAGCAT+AGG 0.594045 8_1:-27737723 Msa1187820:CDS
TCGGTCCATGGTCAAGACCA+TGG 0.594522 8_1:+27738142 None:intergenic
AGTCCCTTGGGTGATGTGCA+AGG 0.594773 8_1:-27740831 Msa1187820:five_prime_UTR
GTGGACAACCCACTCAAAGA+TGG 0.595248 8_1:-27737614 Msa1187820:intron
GTTTGGTTGAAGTATGTGCC+CGG 0.595819 8_1:-27741479 Msa1187820:five_prime_UTR
ACATTATGAAACATGGGAGA+CGG 0.597371 8_1:-27738187 Msa1187820:CDS
TGTCGATTCTAGGTTCTCAT+GGG 0.600914 8_1:-27739095 Msa1187820:CDS
TGGTCTTGACCATGGACCGA+AGG 0.602007 8_1:-27738139 Msa1187820:CDS
TGGTGTCTCTTGTAACATTG+AGG 0.602569 8_1:+27739002 None:intergenic
GTGCAAGGAAAATGATGCCC+CGG 0.603150 8_1:-27740816 Msa1187820:five_prime_UTR
ATTCACTAGCTACTCCAAGC+CGG 0.607564 8_1:-27737918 Msa1187820:CDS
GTCGCAGGTATCATGTTCCA+AGG 0.612046 8_1:-27737046 Msa1187820:intron
ACTATCTATGGTACATAACC+AGG 0.614868 8_1:-27738976 Msa1187820:intron
GGAAGGATGCTTATGGACCA+TGG 0.616757 8_1:+27739466 None:intergenic
CTTCCTAGGTCCAAAGCCAA+TGG 0.616947 8_1:+27737765 None:intergenic
CTAATTAAGAAAGCCAAACA+TGG 0.617287 8_1:-27741874 Msa1187820:five_prime_UTR
AAGCATAGGAAGATATTGGA+TGG 0.618267 8_1:-27737709 Msa1187820:CDS
CCCGTTAGCAAACACATGGA+CGG 0.620558 8_1:+27738578 None:intergenic
ATTATGAAACATGGGAGACG+GGG 0.624351 8_1:-27738185 Msa1187820:CDS
CGAATATGGACCAGAGAGCG+GGG 0.624874 8_1:-27740921 Msa1187820:five_prime_UTR
AACGAATATGGACCAGAGAG+CGG 0.624993 8_1:-27740923 Msa1187820:five_prime_UTR
GACCTAGGAAGTATGGGTAA+GGG 0.625201 8_1:-27737753 Msa1187820:CDS
TATGATAAATTATAGTACCA+TGG 0.626716 8_1:-27740186 Msa1187820:five_prime_UTR
TAATTTATCATAACGGACAA+AGG 0.628776 8_1:+27740197 None:intergenic
TGGGTTGTCCACAACCAAGT+TGG 0.630478 8_1:+27737625 None:intergenic
TTTCCTTGCACATCACCCAA+GGG 0.630779 8_1:+27740828 None:intergenic
AGAGCTCACCACAGGATCCG+GGG 0.631333 8_1:+27740799 None:intergenic
GAAAAGCTGTTTCAGTCTCA+GGG 0.631820 8_1:-27741277 Msa1187820:five_prime_UTR
CTCATATGTGAATTACTACA+TGG 0.632328 8_1:-27740345 Msa1187820:intron
CGGAAGTTATGCAATCAGGA+AGG 0.637295 8_1:+27739449 None:intergenic
TGGTCATGCATACCTAAACT+GGG 0.638626 8_1:-27740885 Msa1187820:five_prime_UTR
AACTTTGGACGATCAGCTGG+TGG 0.640845 8_1:-27740156 Msa1187820:five_prime_UTR
GTCACAACTAAAATGGTACA+AGG 0.642717 8_1:-27737896 Msa1187820:intron
AACCATATAAGCCTAGCATG+TGG 0.643949 8_1:-27740569 Msa1187820:five_prime_UTR
GTAGTGTTTGAAGAACTTGG+CGG 0.651378 8_1:-27736993 Msa1187820:CDS
ATATAAGCCTAGCATGTGGA+CGG 0.652636 8_1:-27740565 Msa1187820:five_prime_UTR
CTACTAGACAAGTTCATGTG+TGG 0.655745 8_1:-27742271 None:intergenic
GACCTTATATATGCGCTGAG+TGG 0.656602 8_1:-27741609 Msa1187820:five_prime_UTR
AAATGATGCCCCGGATCCTG+TGG 0.661573 8_1:-27740807 Msa1187820:intron
GCCCGGAATAAGCTTCAGAA+CGG 0.662264 8_1:-27741462 Msa1187820:five_prime_UTR
ATTGCCCGTTAGCAAACACA+TGG 0.666309 8_1:+27738574 None:intergenic
TTGAGTTCACTAACGAGCTG+CGG 0.670744 8_1:+27736926 None:intergenic
GGTGGGAACTCAAACGTCAG+TGG 0.672709 8_1:-27739131 Msa1187820:five_prime_UTR
TTATATAACTTATTGCACCA+AGG 0.676455 8_1:+27736855 None:intergenic
TGGCCGACATTATGAAACAT+GGG 0.682911 8_1:-27738193 Msa1187820:CDS
CGCATATATAAGGTCCAATG+CGG 0.688851 8_1:+27741617 None:intergenic
CAATTGCAAACATACTTCAG+GGG 0.689900 8_1:+27741982 None:intergenic
ATTAAGAAAGCCAAACATGG+TGG 0.693632 8_1:-27741871 Msa1187820:five_prime_UTR
ATGTGGACGGAGTCTTGGAG+TGG 0.699415 8_1:-27740552 Msa1187820:five_prime_UTR
ACAGGTTGGACTAAAAGGAG+AGG 0.707740 8_1:-27737992 Msa1187820:intron
GAATTTGGTATCACCCAATG+GGG 0.708312 8_1:-27737965 Msa1187820:CDS
GATAAATTATAGTACCATGG+AGG 0.734146 8_1:-27740183 Msa1187820:five_prime_UTR
AAGCTGTTTCAGTCTCAGGG+TGG 0.745842 8_1:-27741274 Msa1187820:five_prime_UTR
AGGATGCTTATGGACCATGG+AGG 0.806726 8_1:+27739469 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACAATTTTATTCTTTAA+TGG - chr8_1:27737418-27737437 Msa1187820:intron 10.0%
!! ATATTATCAATATTTCAAAA+TGG - chr8_1:27741465-27741484 Msa1187820:five_prime_UTR 10.0%
!! AAAAAGGAATGAAATTAAAA+TGG + chr8_1:27737381-27737400 None:intergenic 15.0%
!!! TCTTTGATTTTATGATAATT+TGG - chr8_1:27737523-27737542 Msa1187820:intron 15.0%
!!! TATATATTTTTTTTGGGTTT+AGG - chr8_1:27737588-27737607 Msa1187820:intron 15.0%
!! AATATAGGAATAAATTATGA+TGG + chr8_1:27739728-27739747 None:intergenic 15.0%
!!! TTGAAATATTGATAATATGA+GGG + chr8_1:27741463-27741482 None:intergenic 15.0%
!!! TTTGAAATATTGATAATATG+AGG + chr8_1:27741464-27741483 None:intergenic 15.0%
!!! TGATATTAATTTGATAACAT+GGG + chr8_1:27741588-27741607 None:intergenic 15.0%
!!! ATGATATTAATTTGATAACA+TGG + chr8_1:27741589-27741608 None:intergenic 15.0%
!! TAAATTACAAATGATATTCT+AGG + chr8_1:27742205-27742224 None:intergenic 15.0%
!!! AACATTGTTTGTTTTGTTTT+TGG - chr8_1:27736834-27736853 Msa1187820:three_prime_UTR 20.0%
!!! ATTTGTTGTTTTTCTGATTA+TGG - chr8_1:27737209-27737228 Msa1187820:intron 20.0%
!!! TTTGTTGTTTTTCTGATTAT+GGG - chr8_1:27737210-27737229 Msa1187820:intron 20.0%
!! CACAACAAAATTACATAAAA+AGG + chr8_1:27737397-27737416 None:intergenic 20.0%
!!! TTTATGATAATTTGGTTTCT+CGG - chr8_1:27737531-27737550 Msa1187820:intron 20.0%
!! ACTCAATAAGTATATAATGA+TGG + chr8_1:27738267-27738286 None:intergenic 20.0%
!! CTGAAAAATAAATTCATAGA+AGG + chr8_1:27738626-27738645 None:intergenic 20.0%
!! TGACTTTAACTATTTGAATA+AGG - chr8_1:27738657-27738676 Msa1187820:CDS 20.0%
!! GGTACTATAATTTATCATAA+CGG + chr8_1:27738748-27738767 None:intergenic 20.0%
!! TATGATAAATTATAGTACCA+TGG - chr8_1:27738749-27738768 Msa1187820:intron 20.0%
!! TACATTTGCAGTATTAAATA+CGG + chr8_1:27739509-27739528 None:intergenic 20.0%
!! TTTAATCAACATAGCTTAAA+AGG + chr8_1:27739548-27739567 None:intergenic 20.0%
!!! TTTCTAGTTTGTATCTATTT+TGG + chr8_1:27739610-27739629 None:intergenic 20.0%
!! ACTATTACATCACATTTAAA+TGG + chr8_1:27739702-27739721 None:intergenic 20.0%
!! TGATATATATTTATACAGGT+GGG - chr8_1:27739787-27739806 Msa1187820:five_prime_UTR 20.0%
!!! TTTCAAATGTTACTGTTTTT+TGG - chr8_1:27740243-27740262 Msa1187820:intron 20.0%
!!! TTACTATTGCCATTTTTTAT+TGG - chr8_1:27740711-27740730 Msa1187820:intron 20.0%
!!! GATATTAATTTGATAACATG+GGG + chr8_1:27741587-27741606 None:intergenic 20.0%
!! TATAATTTCAATGACCAAAT+TGG - chr8_1:27741714-27741733 Msa1187820:intron 20.0%
!! AATAATAATATTAGTGGCAT+TGG + chr8_1:27741803-27741822 None:intergenic 20.0%
!! CAGAAGAATAATAATATTAG+TGG + chr8_1:27741809-27741828 None:intergenic 20.0%
!!! TCTTTTATATAAAATCATGG+TGG + chr8_1:27742177-27742196 None:intergenic 20.0%
!!! GCATCTTTTATATAAAATCA+TGG + chr8_1:27742180-27742199 None:intergenic 20.0%
!! AGAAAATTACAATCTTAAGA+CGG - chr8_1:27742264-27742283 Msa1187820:five_prime_UTR 20.0%
! CAGAAATTAGAATTCTTCTT+TGG + chr8_1:27736909-27736928 None:intergenic 25.0%
! CAAAGAAGAATTCTAATTTC+TGG - chr8_1:27736907-27736926 Msa1187820:three_prime_UTR 25.0%
!!! AAATGTGTGATTTTTAGATG+TGG - chr8_1:27737032-27737051 Msa1187820:CDS 25.0%
!!! AATGTGTGATTTTTAGATGT+GGG - chr8_1:27737033-27737052 Msa1187820:CDS 25.0%
! AAGGAAGATATGATTTAGTA+AGG - chr8_1:27737254-27737273 Msa1187820:intron 25.0%
! TATTAAGACAATGCAAAAAG+TGG - chr8_1:27737279-27737298 Msa1187820:intron 25.0%
! ATTAAGACAATGCAAAAAGT+GGG - chr8_1:27737280-27737299 Msa1187820:intron 25.0%
! TTTATTCTTTAATGGTGTAG+AGG - chr8_1:27737426-27737445 Msa1187820:intron 25.0%
! AAGAAAAATTCAACCTTGAA+AGG + chr8_1:27737507-27737526 None:intergenic 25.0%
! ATCTTGAAGTAGTAATTTGA+TGG + chr8_1:27737798-27737817 None:intergenic 25.0%
! TATCTGATCTACAAAACAAT+AGG + chr8_1:27737826-27737845 None:intergenic 25.0%
! TTACATGAATTAATCTGTAG+TGG + chr8_1:27738314-27738333 None:intergenic 25.0%
! CTACAGATTAATTCATGTAA+TGG - chr8_1:27738314-27738333 Msa1187820:intron 25.0%
!! ATCATAAGGTTTACAGATTT+TGG - chr8_1:27738498-27738517 Msa1187820:intron 25.0%
!!! TAATTTATCATAACGGACAA+AGG + chr8_1:27738741-27738760 None:intergenic 25.0%
! TTCTTACCATATTCATCAAT+TGG + chr8_1:27738839-27738858 None:intergenic 25.0%
!! TCCTTCAAATGACTATATTT+TGG + chr8_1:27739139-27739158 None:intergenic 25.0%
!! CAAATGTAAGAATATTTTGC+AGG - chr8_1:27739521-27739540 Msa1187820:five_prime_UTR 25.0%
! CAAATAATTGATTGATGCAA+AGG + chr8_1:27739760-27739779 None:intergenic 25.0%
! CATCAATCAATTATTTGACT+GGG - chr8_1:27739763-27739782 Msa1187820:five_prime_UTR 25.0%
! CTGATATATATTTATACAGG+TGG - chr8_1:27739786-27739805 Msa1187820:five_prime_UTR 25.0%
!! AGTTTTCGTAATTCATTTGA+TGG + chr8_1:27740029-27740048 None:intergenic 25.0%
! TATCAAAGCAATAATTTCCT+AGG - chr8_1:27740068-27740087 Msa1187820:intron 25.0%
! AATCTGAAAGATGCTTAAAA+TGG + chr8_1:27740173-27740192 None:intergenic 25.0%
!!! AAATGTTACTGTTTTTTGGT+TGG - chr8_1:27740247-27740266 Msa1187820:intron 25.0%
! ATTAATTCTGAGTTAACTGA+AGG - chr8_1:27740436-27740455 Msa1187820:intron 25.0%
!!! TTCAAGTTGGATTTAGAATA+TGG + chr8_1:27740605-27740624 None:intergenic 25.0%
! AACGTTCTTCCAATAAAAAA+TGG + chr8_1:27740723-27740742 None:intergenic 25.0%
!!! ATTTTTTATTGGAAGAACGT+TGG - chr8_1:27740722-27740741 Msa1187820:intron 25.0%
! TTTGTTTGTTTAGGAAAATG+TGG - chr8_1:27741387-27741406 Msa1187820:intron 25.0%
! TAAAGTTGAAAAGGTTAATC+AGG + chr8_1:27741645-27741664 None:intergenic 25.0%
!! TGATTAACCTTTTCAACTTT+AGG - chr8_1:27741644-27741663 Msa1187820:five_prime_UTR 25.0%
!!! ATTTTGGAATATTGATGATG+TGG - chr8_1:27741671-27741690 Msa1187820:five_prime_UTR 25.0%
!!! ATGATAATGACACGTTATTT+TGG - chr8_1:27741761-27741780 Msa1187820:intron 25.0%
! ATTATTCTTCTGTATACAAG+AGG - chr8_1:27741817-27741836 Msa1187820:five_prime_UTR 25.0%
! TTATATAACTTATTGCACCA+AGG + chr8_1:27742083-27742102 None:intergenic 25.0%
! TATATAAAATCATGGTGGTT+TGG + chr8_1:27742172-27742191 None:intergenic 25.0%
AAGAAGAAGAAGAAGAAGAA+TGG + chr8_1:27736755-27736774 None:intergenic 30.0%
CAATGTTGTTACTACTACTA+GGG + chr8_1:27736821-27736840 None:intergenic 30.0%
ACAATGTTGTTACTACTACT+AGG + chr8_1:27736822-27736841 None:intergenic 30.0%
CTAATTAAGAAAGCCAAACA+TGG - chr8_1:27737061-27737080 Msa1187820:intron 30.0%
TTATAGACACTTATGTCTTC+TGG - chr8_1:27737095-27737114 Msa1187820:intron 30.0%
TATAGACACTTATGTCTTCT+GGG - chr8_1:27737096-27737115 Msa1187820:intron 30.0%
AAGGGCTTCATGAAAATTAA+GGG + chr8_1:27737154-27737173 None:intergenic 30.0%
AAAGGGCTTCATGAAAATTA+AGG + chr8_1:27737155-27737174 None:intergenic 30.0%
TTAAGACAATGCAAAAAGTG+GGG - chr8_1:27737281-27737300 Msa1187820:intron 30.0%
CTTATGTTTCATCTACTTCT+AGG + chr8_1:27737757-27737776 None:intergenic 30.0%
TTCTAGATTGAGAACGAATA+TGG - chr8_1:27738000-27738019 Msa1187820:intron 30.0%
GAGTCTCAAGTTCTATATTT+AGG - chr8_1:27738237-27738256 Msa1187820:intron 30.0%
! ATTAATCTGTAGTGGAGAAT+TGG + chr8_1:27738306-27738325 None:intergenic 30.0%
CTAGGCTTATATGGTTTATT+CGG + chr8_1:27738362-27738381 None:intergenic 30.0%
! GAGAGATCAGAAGTATAAAA+GGG + chr8_1:27738461-27738480 None:intergenic 30.0%
! AGAGAGATCAGAAGTATAAA+AGG + chr8_1:27738462-27738481 None:intergenic 30.0%
TTCTATTCTCCATGATCATA+AGG - chr8_1:27738484-27738503 Msa1187820:intron 30.0%
ATCTGTAAACCTTATGATCA+TGG + chr8_1:27738496-27738515 None:intergenic 30.0%
! ATAAGGTTTACAGATTTTGG+TGG - chr8_1:27738501-27738520 Msa1187820:intron 30.0%
CTCATATGTGAATTACTACA+TGG - chr8_1:27738590-27738609 Msa1187820:CDS 30.0%
TATGTGAATTACTACATGGT+TGG - chr8_1:27738594-27738613 Msa1187820:CDS 30.0%
! TTTTGTTGCAAGAAAACATG+TGG - chr8_1:27738689-27738708 Msa1187820:intron 30.0%
GATAAATTATAGTACCATGG+AGG - chr8_1:27738752-27738771 Msa1187820:intron 30.0%
! TCATAGCTTGTAGTAATGAA+TGG + chr8_1:27738806-27738825 None:intergenic 30.0%
TGATTCACTGAGAATTTGAA+TGG - chr8_1:27738905-27738924 Msa1187820:intron 30.0%
! TAAAAGCTCTCTTTTTGTTC+AGG + chr8_1:27739077-27739096 None:intergenic 30.0%
GCCAAAATATAGTCATTTGA+AGG - chr8_1:27739135-27739154 Msa1187820:intron 30.0%
ACAAGCAAAGAACTAGAAAA+GGG + chr8_1:27739274-27739293 None:intergenic 30.0%
AACAAGCAAAGAACTAGAAA+AGG + chr8_1:27739275-27739294 None:intergenic 30.0%
! CTACTGTGGTTTTCAATAAT+AGG - chr8_1:27739431-27739450 Msa1187820:intron 30.0%
GCATCAATCAATTATTTGAC+TGG - chr8_1:27739762-27739781 Msa1187820:five_prime_UTR 30.0%
GGGCTGATATATATTTATAC+AGG - chr8_1:27739783-27739802 Msa1187820:five_prime_UTR 30.0%
AGAAGATAGATCTTCATCAT+AGG + chr8_1:27739869-27739888 None:intergenic 30.0%
ATTATATCACTCATCTTACC+TGG + chr8_1:27739980-27739999 None:intergenic 30.0%
CAAATTTCTTCTGCTTGAAT+TGG + chr8_1:27740116-27740135 None:intergenic 30.0%
!! AGGTGACTGATTTCTTTTAA+AGG - chr8_1:27740456-27740475 Msa1187820:intron 30.0%
!! GGTGACTGATTTCTTTTAAA+GGG - chr8_1:27740457-27740476 Msa1187820:intron 30.0%
!! ACTGATTTCTTTTAAAGGGT+CGG - chr8_1:27740461-27740480 Msa1187820:intron 30.0%
AGAGAAGTTGCACATTTAAT+GGG - chr8_1:27740502-27740521 Msa1187820:intron 30.0%
ATATGGTATTAAGCACTAAC+CGG + chr8_1:27740588-27740607 None:intergenic 30.0%
!! GCATAATAAATGGTCTTATC+AGG - chr8_1:27740826-27740845 Msa1187820:five_prime_UTR 30.0%
AGTAGAATATGTTGTTGAAC+AGG - chr8_1:27740925-27740944 Msa1187820:five_prime_UTR 30.0%
TTTGTCCATTTATCCATACT+TGG + chr8_1:27741208-27741227 None:intergenic 30.0%
AAATTGTACCATCTTTGAGT+GGG + chr8_1:27741332-27741351 None:intergenic 30.0%
AAAATTGTACCATCTTTGAG+TGG + chr8_1:27741333-27741352 None:intergenic 30.0%
CCTAAACAAACAAAGAAGTA+AGG + chr8_1:27741381-27741400 None:intergenic 30.0%
! CCTTACTTCTTTGTTTGTTT+AGG - chr8_1:27741378-27741397 Msa1187820:intron 30.0%
!! ATATTGATGATGTGGATACT+AGG - chr8_1:27741679-27741698 Msa1187820:five_prime_UTR 30.0%
TATGTCGCAAATATCCAATT+TGG + chr8_1:27741731-27741750 None:intergenic 30.0%
ATGTTTACAAGTGTTCTGTT+TGG - chr8_1:27741860-27741879 Msa1187820:five_prime_UTR 30.0%
ACTACTATTAGGTTCTTTGT+TGG + chr8_1:27741927-27741946 None:intergenic 30.0%
GTTCTTCAAACACTACTATT+AGG + chr8_1:27741938-27741957 None:intergenic 30.0%
ATAGTAGTGTTTGAAGAACT+TGG - chr8_1:27741939-27741958 Msa1187820:intron 30.0%
GAATCCTTGGAAAATTTCTT+TGG - chr8_1:27741965-27741984 Msa1187820:intron 30.0%
! TTCACCAAAGAAATTTTCCA+AGG + chr8_1:27741972-27741991 None:intergenic 30.0%
TTTGTATGTAGCTTCACTTA+GGG - chr8_1:27742114-27742133 Msa1187820:five_prime_UTR 30.0%
!! GTCATTTTATTGTATCTAGC+TGG - chr8_1:27742238-27742257 Msa1187820:five_prime_UTR 30.0%
!! TCTTCTTCTTCTTTGAGACA+TGG - chr8_1:27736771-27736790 Msa1187820:three_prime_UTR 35.0%
AGAAAGTCTCTTCTCATCAA+TGG - chr8_1:27736883-27736902 Msa1187820:three_prime_UTR 35.0%
CAATTGCAAACATACTTCAG+GGG + chr8_1:27736956-27736975 None:intergenic 35.0%
GCAATTGCAAACATACTTCA+GGG + chr8_1:27736957-27736976 None:intergenic 35.0%
TGCAATTGCAAACATACTTC+AGG + chr8_1:27736958-27736977 None:intergenic 35.0%
ATTAAGAAAGCCAAACATGG+TGG - chr8_1:27737064-27737083 Msa1187820:intron 35.0%
!! ATTAAGGGTATTACATTGCC+AGG + chr8_1:27737139-27737158 None:intergenic 35.0%
! GCATTGCAGTACAATTTTGA+AGG - chr8_1:27737235-27737254 Msa1187820:intron 35.0%
ATAAGCTTCAGAACGGATAA+CGG - chr8_1:27737480-27737499 Msa1187820:intron 35.0%
!! ATTTGGTTTCTCGGTTTTGA+CGG - chr8_1:27737540-27737559 Msa1187820:intron 35.0%
! GCTTTTCACTCTTCATCATT+TGG + chr8_1:27737645-27737664 None:intergenic 35.0%
CATACCTGAGAGAGAATTAT+TGG + chr8_1:27737688-27737707 None:intergenic 35.0%
TTGAATGTGTGCGTAATTGA+AGG - chr8_1:27737718-27737737 Msa1187820:CDS 35.0%
GATGCTCCAATTGATGAATA+TGG - chr8_1:27738830-27738849 Msa1187820:intron 35.0%
AATATCGAAGAATCTGCTTC+TGG + chr8_1:27738873-27738892 None:intergenic 35.0%
CAAGAATCAACTCAACTTGA+GGG + chr8_1:27738998-27739017 None:intergenic 35.0%
!! ACTTTCTTTAAGACCACTCA+GGG + chr8_1:27739033-27739052 None:intergenic 35.0%
!! AACTTTCTTTAAGACCACTC+AGG + chr8_1:27739034-27739053 None:intergenic 35.0%
TTGAGCACTTCACTATGTTT+AGG - chr8_1:27739100-27739119 Msa1187820:CDS 35.0%
! CACTTCACTATGTTTAGGTT+TGG - chr8_1:27739105-27739124 Msa1187820:CDS 35.0%
AAGCACATACAGAGAGAATA+AGG + chr8_1:27739328-27739347 None:intergenic 35.0%
TTATTCTCTCTGTATGTGCT+TGG - chr8_1:27739327-27739346 Msa1187820:intron 35.0%
AATACGGAAGTTATGCAATC+AGG + chr8_1:27739493-27739512 None:intergenic 35.0%
CAAAGGACAAGGCTTAATAT+AGG + chr8_1:27739743-27739762 None:intergenic 35.0%
ATTGATTGATGCAAAGGACA+AGG + chr8_1:27739754-27739773 None:intergenic 35.0%
TATGTACCATAGATAGTCAC+TGG + chr8_1:27739956-27739975 None:intergenic 35.0%
ACTATCTATGGTACATAACC+AGG - chr8_1:27739959-27739978 Msa1187820:intron 35.0%
!! ACGAAAACTTTTTGAGCTGT+TGG - chr8_1:27740040-27740059 Msa1187820:intron 35.0%
CAAAGCAATAATTTCCTAGG+CGG - chr8_1:27740071-27740090 Msa1187820:intron 35.0%
GGTCAAGTACAGGAATTTAT+TGG + chr8_1:27740152-27740171 None:intergenic 35.0%
TGCTTAAAATGGTCAAGTAC+AGG + chr8_1:27740162-27740181 None:intergenic 35.0%
TGAAATGTTGAGAACTGAGA+AGG + chr8_1:27740228-27740247 None:intergenic 35.0%
TCATCAGAATCATTTCTTCG+AGG - chr8_1:27740293-27740312 Msa1187820:intron 35.0%
!! TTTGCTAACGGGCAATTTTT+AGG - chr8_1:27740368-27740387 Msa1187820:five_prime_UTR 35.0%
CAGAGAAGTTGCACATTTAA+TGG - chr8_1:27740501-27740520 Msa1187820:intron 35.0%
AATTCAATCAGTGACAAGCA+AGG + chr8_1:27740679-27740698 None:intergenic 35.0%
TCTCCCATGTTTCATAATGT+CGG + chr8_1:27740748-27740767 None:intergenic 35.0%
ACATTATGAAACATGGGAGA+CGG - chr8_1:27740748-27740767 Msa1187820:intron 35.0%
TTATTATGCGACAGATCCTT+CGG + chr8_1:27740815-27740834 None:intergenic 35.0%
AGGATCTGTCGCATAATAAA+TGG - chr8_1:27740816-27740835 Msa1187820:five_prime_UTR 35.0%
GAATATGTTGTTGAACAGGT+TGG - chr8_1:27740929-27740948 Msa1187820:five_prime_UTR 35.0%
TGAATTTGGTATCACCCAAT+GGG - chr8_1:27740969-27740988 Msa1187820:intron 35.0%
!!! TGTACCATTTTAGTTGTGAC+CGG + chr8_1:27741039-27741058 None:intergenic 35.0%
GTCACAACTAAAATGGTACA+AGG - chr8_1:27741039-27741058 Msa1187820:intron 35.0%
TGGATAAATGGACAAAGCAT+AGG - chr8_1:27741212-27741231 Msa1187820:intron 35.0%
GACAAAGCATAGGAAGATAT+TGG - chr8_1:27741222-27741241 Msa1187820:intron 35.0%
AAGCATAGGAAGATATTGGA+TGG - chr8_1:27741226-27741245 Msa1187820:intron 35.0%
ATATTGGATGGCTTATGCAA+AGG - chr8_1:27741238-27741257 Msa1187820:intron 35.0%
TATTGGATGGCTTATGCAAA+GGG - chr8_1:27741239-27741258 Msa1187820:intron 35.0%
TGTGGAGTAAATACTCAAGT+TGG - chr8_1:27741405-27741424 Msa1187820:intron 35.0%
GGTAATTTCCTACCATTTCA+AGG + chr8_1:27741432-27741451 None:intergenic 35.0%
GATAATATGAGGGACTAGAT+TGG + chr8_1:27741453-27741472 None:intergenic 35.0%
TGATAACAGGTCAAAACAGA+GGG + chr8_1:27741524-27741543 None:intergenic 35.0%
! TTGATAACAGGTCAAAACAG+AGG + chr8_1:27741525-27741544 None:intergenic 35.0%
! TCAGAGATGCATTTGATAAC+AGG + chr8_1:27741537-27741556 None:intergenic 35.0%
! AATATTAGTGGCATTGGATC+TGG + chr8_1:27741797-27741816 None:intergenic 35.0%
GTTTGTATGTAGCTTCACTT+AGG - chr8_1:27742113-27742132 Msa1187820:five_prime_UTR 35.0%
TTGTATGTAGCTTCACTTAG+GGG - chr8_1:27742115-27742134 Msa1187820:five_prime_UTR 35.0%
GTTCATGTGTGGTGTGAAAA+TGG - chr8_1:27736675-27736694 Msa1187820:three_prime_UTR 40.0%
AACATCAAGACCACCATGTT+TGG + chr8_1:27737077-27737096 None:intergenic 40.0%
CGCATATATAAGGTCCAATG+CGG + chr8_1:27737321-27737340 None:intergenic 40.0%
TTCCACTCAGCGCATATATA+AGG + chr8_1:27737331-27737350 None:intergenic 40.0%
!! ATCCGTTCTGAAGCTTATTC+CGG + chr8_1:27737478-27737497 None:intergenic 40.0%
! TGAAAAGCTGTTTCAGTCTC+AGG - chr8_1:27737657-27737676 Msa1187820:CDS 40.0%
! GAAAAGCTGTTTCAGTCTCA+GGG - chr8_1:27737658-27737677 Msa1187820:CDS 40.0%
TGGTCCAATAATTCTCTCTC+AGG - chr8_1:27737681-27737700 Msa1187820:CDS 40.0%
CGCACACATTCAAAAGAGAA+AGG + chr8_1:27737711-27737730 None:intergenic 40.0%
ACTGTAGCAAAGGTAAGAGA+GGG + chr8_1:27737896-27737915 None:intergenic 40.0%
ATGTACGTAGACTGTAGCAA+AGG + chr8_1:27737906-27737925 None:intergenic 40.0%
TGGTCATGCATACCTAAACT+GGG - chr8_1:27738050-27738069 Msa1187820:intron 40.0%
TGCAAATATGGCTGTTGGAT+TGG - chr8_1:27738074-27738093 Msa1187820:intron 40.0%
GCAAATATGGCTGTTGGATT+GGG - chr8_1:27738075-27738094 Msa1187820:intron 40.0%
! ATCTGTAGTGGAGAATTGGA+TGG + chr8_1:27738302-27738321 None:intergenic 40.0%
AACCATATAAGCCTAGCATG+TGG - chr8_1:27738366-27738385 Msa1187820:intron 40.0%
ATATAAGCCTAGCATGTGGA+CGG - chr8_1:27738370-27738389 Msa1187820:CDS 40.0%
AGTTGCTCGTTTCATTCAGA+AGG - chr8_1:27738563-27738582 Msa1187820:intron 40.0%
GTTGCTCGTTTCATTCAGAA+GGG - chr8_1:27738564-27738583 Msa1187820:intron 40.0%
GTGAATTACTACATGGTTGG+TGG - chr8_1:27738597-27738616 Msa1187820:CDS 40.0%
ACGGACAAAGGTGAAACTTA+AGG + chr8_1:27738729-27738748 None:intergenic 40.0%
CCAAGAATCAACTCAACTTG+AGG + chr8_1:27738999-27739018 None:intergenic 40.0%
!! CCTCAAGTTGAGTTGATTCT+TGG - chr8_1:27738996-27739015 Msa1187820:CDS 40.0%
!! CTTTCTTTAAGACCACTCAG+GGG + chr8_1:27739032-27739051 None:intergenic 40.0%
! AGCTCTCTTTTTGTTCAGGA+TGG + chr8_1:27739073-27739092 None:intergenic 40.0%
! CACTATGTTTAGGTTTGGTC+AGG - chr8_1:27739110-27739129 Msa1187820:exon 40.0%
! TGAGCATGCTTTGGTTTCTT+CGG - chr8_1:27739183-27739202 Msa1187820:intron 40.0%
GATCCTACTGTTACACCATT+AGG - chr8_1:27739205-27739224 Msa1187820:intron 40.0%
GTTCCTAATGGTGTAACAGT+AGG + chr8_1:27739211-27739230 None:intergenic 40.0%
!! TATGTGCTTGGTGATTTTCC+AGG - chr8_1:27739339-27739358 Msa1187820:intron 40.0%
!! AAATGAGTCCTGTCGATTCT+AGG - chr8_1:27739830-27739849 Msa1187820:intron 40.0%
!! TGTCGATTCTAGGTTCTCAT+GGG - chr8_1:27739840-27739859 Msa1187820:intron 40.0%
CTTCTCTAGACGAAAGTTCA+AGG - chr8_1:27739884-27739903 Msa1187820:intron 40.0%
TGGTGTCTCTTGTAACATTG+AGG + chr8_1:27739936-27739955 None:intergenic 40.0%
TATCTCCTAGATCTTCAGTC+AGG - chr8_1:27740003-27740022 Msa1187820:intron 40.0%
ATGTTGAGAACTGAGAAGGT+AGG + chr8_1:27740224-27740243 None:intergenic 40.0%
TCAGAATCATTTCTTCGAGG+AGG - chr8_1:27740296-27740315 Msa1187820:intron 40.0%
GCAGACTGCACATTAATGTT+GGG + chr8_1:27740329-27740348 None:intergenic 40.0%
TGCAGACTGCACATTAATGT+TGG + chr8_1:27740330-27740349 None:intergenic 40.0%
AACATTAATGTGCAGTCTGC+AGG - chr8_1:27740329-27740348 Msa1187820:intron 40.0%
!! TCTTTTAAAGGGTCGGCATT+TGG - chr8_1:27740468-27740487 Msa1187820:intron 40.0%
!! CTTTTAAAGGGTCGGCATTT+GGG - chr8_1:27740469-27740488 Msa1187820:intron 40.0%
CTGAATGCTCAAGTTCAAGT+TGG + chr8_1:27740618-27740637 None:intergenic 40.0%
TTGGCCGACATTATGAAACA+TGG - chr8_1:27740741-27740760 Msa1187820:intron 40.0%
TGGCCGACATTATGAAACAT+GGG - chr8_1:27740742-27740761 Msa1187820:intron 40.0%
CATTATGAAACATGGGAGAC+GGG - chr8_1:27740749-27740768 Msa1187820:intron 40.0%
ATTATGAAACATGGGAGACG+GGG - chr8_1:27740750-27740769 Msa1187820:intron 40.0%
! GTTGAACAGGTTGGACTAAA+AGG - chr8_1:27740938-27740957 Msa1187820:intron 40.0%
AAAAGGAGAGGCTGTGAATT+TGG - chr8_1:27740955-27740974 Msa1187820:intron 40.0%
GTGAATTTGGTATCACCCAA+TGG - chr8_1:27740968-27740987 Msa1187820:intron 40.0%
GAATTTGGTATCACCCAATG+GGG - chr8_1:27740970-27740989 Msa1187820:intron 40.0%
CAAGGTAAGAGCAGTTTACT+AGG - chr8_1:27741057-27741076 Msa1187820:intron 40.0%
! GAGGTTTGAAGTTTGTGGTA+AGG + chr8_1:27741117-27741136 None:intergenic 40.0%
AAGGGCCAAGTATGGATAAA+TGG - chr8_1:27741200-27741219 Msa1187820:intron 40.0%
TGCAATTCCTGCAACTATTC+TGG - chr8_1:27741266-27741285 Msa1187820:five_prime_UTR 40.0%
GCAATTCCTGCAACTATTCT+GGG - chr8_1:27741267-27741286 Msa1187820:five_prime_UTR 40.0%
!! ACTCAAGTTGGTCCTTGAAA+TGG - chr8_1:27741417-27741436 Msa1187820:intron 40.0%
! AAGTTGGTCCTTGAAATGGT+AGG - chr8_1:27741421-27741440 Msa1187820:intron 40.0%
TCCTTGCAAGTATCAACAGA+GGG - chr8_1:27741614-27741633 Msa1187820:five_prime_UTR 40.0%
GTAGTGTTTGAAGAACTTGG+CGG - chr8_1:27741942-27741961 Msa1187820:intron 40.0%
TAGTGTTTGAAGAACTTGGC+GGG - chr8_1:27741943-27741962 Msa1187820:intron 40.0%
GGTGCTTCTTGGATAGTGAA+TGG + chr8_1:27736935-27736954 None:intergenic 45.0%
GATGTTCATGAACCATCTCC+TGG - chr8_1:27737118-27737137 Msa1187820:intron 45.0%
GGTATTACATTGCCAGGAGA+TGG + chr8_1:27737133-27737152 None:intergenic 45.0%
CTTTATGCCAATCTCCGCAT+TGG - chr8_1:27737304-27737323 Msa1187820:intron 45.0%
ATAAGGTCCAATGCGGAGAT+TGG + chr8_1:27737314-27737333 None:intergenic 45.0%
GACCTTATATATGCGCTGAG+TGG - chr8_1:27737326-27737345 Msa1187820:intron 45.0%
ATATGCGCTGAGTGGAACTT+TGG - chr8_1:27737334-27737353 Msa1187820:intron 45.0%
TATGCGCTGAGTGGAACTTT+GGG - chr8_1:27737335-27737354 Msa1187820:intron 45.0%
GGTGTAGAGGAATTCCTGTT+TGG - chr8_1:27737439-27737458 Msa1187820:intron 45.0%
GGCACATACTTCAACCAAAC+AGG + chr8_1:27737456-27737475 None:intergenic 45.0%
GTTTGGTTGAAGTATGTGCC+CGG - chr8_1:27737456-27737475 Msa1187820:intron 45.0%
!! TCCGTTCTGAAGCTTATTCC+GGG + chr8_1:27737477-27737496 None:intergenic 45.0%
!! AACGGATAACGGACCTTTCA+AGG - chr8_1:27737491-27737510 Msa1187820:intron 45.0%
GACTGTAGCAAAGGTAAGAG+AGG + chr8_1:27737897-27737916 None:intergenic 45.0%
AACGAATATGGACCAGAGAG+CGG - chr8_1:27738012-27738031 Msa1187820:intron 45.0%
CTGGTCATGCATACCTAAAC+TGG - chr8_1:27738049-27738068 Msa1187820:intron 45.0%
CCATATTTGCAGCCCAGTTT+AGG + chr8_1:27738065-27738084 None:intergenic 45.0%
CCTAAACTGGGCTGCAAATA+TGG - chr8_1:27738062-27738081 Msa1187820:intron 45.0%
TTTCCTTGCACATCACCCAA+GGG + chr8_1:27738110-27738129 None:intergenic 45.0%
! TTTTCCTTGCACATCACCCA+AGG + chr8_1:27738111-27738130 None:intergenic 45.0%
AGAATGAAAGAGCTCACCAC+AGG + chr8_1:27738147-27738166 None:intergenic 45.0%
GGTGAGCTCTTTCATTCTCT+TGG - chr8_1:27738149-27738168 Msa1187820:CDS 45.0%
TGCTTCAGCTGTCACACTTA+AGG - chr8_1:27738182-27738201 Msa1187820:CDS 45.0%
GCTTCAGCTGTCACACTTAA+GGG - chr8_1:27738183-27738202 Msa1187820:CDS 45.0%
CTTCAGCTGTCACACTTAAG+GGG - chr8_1:27738184-27738203 Msa1187820:CDS 45.0%
TTCAGCTGTCACACTTAAGG+GGG - chr8_1:27738185-27738204 Msa1187820:CDS 45.0%
GTCCACATGCTAGGCTTATA+TGG + chr8_1:27738371-27738390 None:intergenic 45.0%
GCAAATGCTAGATCCTGAAC+TGG + chr8_1:27738543-27738562 None:intergenic 45.0%
TACCATGGAGGAACCAACTT+TGG - chr8_1:27738764-27738783 Msa1187820:intron 45.0%
ACCATTAGGAACACTTCAGC+AGG - chr8_1:27739219-27739238 Msa1187820:intron 45.0%
! ACCTGCTGAAGTGTTCCTAA+TGG + chr8_1:27739223-27739242 None:intergenic 45.0%
GTATTCTCTGCAGGAACTAC+AGG - chr8_1:27739367-27739386 Msa1187820:intron 45.0%
! TCTAAAGTCTGCTGCTACTG+TGG - chr8_1:27739417-27739436 Msa1187820:intron 45.0%
GCAATCAGGAAGGATGCTTA+TGG + chr8_1:27739479-27739498 None:intergenic 45.0%
CGGAAGTTATGCAATCAGGA+AGG + chr8_1:27739489-27739508 None:intergenic 45.0%
CATGAGAACCTAGAATCGAC+AGG + chr8_1:27739841-27739860 None:intergenic 45.0%
!! CTGTCGATTCTAGGTTCTCA+TGG - chr8_1:27739839-27739858 Msa1187820:intron 45.0%
AGTTCAAGGATTACAGCTGC+TGG - chr8_1:27739898-27739917 Msa1187820:intron 45.0%
GAGACACCAGTGACTATCTA+TGG - chr8_1:27739947-27739966 Msa1187820:intron 45.0%
TGATACAATAGACACCGCCT+AGG + chr8_1:27740088-27740107 None:intergenic 45.0%
ATTGCCCGTTAGCAAACACA+TGG + chr8_1:27740364-27740383 None:intergenic 45.0%
GCTCCAGCATGTAGATTAAC+TGG + chr8_1:27740528-27740547 None:intergenic 45.0%
! CAAGGTGTCTGACAAGCAAA+TGG + chr8_1:27740661-27740680 None:intergenic 45.0%
! ACAGGTTGGACTAAAAGGAG+AGG - chr8_1:27740943-27740962 Msa1187820:intron 45.0%
TCATTAGCTGAGACCCCATT+GGG + chr8_1:27740986-27741005 None:intergenic 45.0%
ATCATTAGCTGAGACCCCAT+TGG + chr8_1:27740987-27741006 None:intergenic 45.0%
ATGGGGTCTCAGCTAATGAT+TGG - chr8_1:27740987-27741006 Msa1187820:intron 45.0%
TGGGGTCTCAGCTAATGATT+GGG - chr8_1:27740988-27741007 Msa1187820:intron 45.0%
ATTCACTAGCTACTCCAAGC+CGG - chr8_1:27741017-27741036 Msa1187820:intron 45.0%
!!! CATTTTAGTTGTGACCGGCT+TGG + chr8_1:27741034-27741053 None:intergenic 45.0%
CAAGCCGGTCACAACTAAAA+TGG - chr8_1:27741032-27741051 Msa1187820:intron 45.0%
ACCACAAACTTCAAACCTCC+AGG - chr8_1:27741118-27741137 Msa1187820:intron 45.0%
! GCTTCTTTTAACACGCCTGA+GGG - chr8_1:27741140-27741159 Msa1187820:intron 45.0%
! GCTTTGGACCTAGGAAGTAT+GGG - chr8_1:27741176-27741195 Msa1187820:intron 45.0%
! GACCTAGGAAGTATGGGTAA+GGG - chr8_1:27741182-27741201 Msa1187820:intron 45.0%
GAATGTCCCAGAATAGTTGC+AGG + chr8_1:27741276-27741295 None:intergenic 45.0%
GTCCTTGCAAGTATCAACAG+AGG - chr8_1:27741613-27741632 Msa1187820:five_prime_UTR 45.0%
TCCCTCTGTTGATACTTGCA+AGG + chr8_1:27741618-27741637 None:intergenic 45.0%
! TCTGTTTGGAATGATGTCGC+AGG - chr8_1:27741874-27741893 Msa1187820:five_prime_UTR 45.0%
GGTATCATGTTCCAAGGTCA+TGG - chr8_1:27741895-27741914 Msa1187820:intron 45.0%
TTGAGTTCACTAACGAGCTG+CGG + chr8_1:27742012-27742031 None:intergenic 45.0%
AAGTTCACTCGCGAATTCTC+TGG - chr8_1:27742036-27742055 Msa1187820:five_prime_UTR 45.0%
!!! AAAATACATTTTTTTTAAAA+GGG + chr8_1:27737172-27737191 None:intergenic 5.0%
!!! AAAAATACATTTTTTTTAAA+AGG + chr8_1:27737173-27737192 None:intergenic 5.0%
!!! TGATATATATATATTTTTTT+TGG - chr8_1:27737581-27737600 Msa1187820:intron 5.0%
!!! GATATATATATATTTTTTTT+GGG - chr8_1:27737582-27737601 Msa1187820:intron 5.0%
!! CATACTTCAGGGGTGCTTCT+TGG + chr8_1:27736946-27736965 None:intergenic 50.0%
GCCCGGAATAAGCTTCAGAA+CGG - chr8_1:27737473-27737492 Msa1187820:intron 50.0%
TGGGTTTAGGCTGCAATGCA+AGG - chr8_1:27737601-27737620 Msa1187820:intron 50.0%
! AAGCTGTTTCAGTCTCAGGG+TGG - chr8_1:27737661-27737680 Msa1187820:CDS 50.0%
ACGAATATGGACCAGAGAGC+GGG - chr8_1:27738013-27738032 Msa1187820:intron 50.0%
TGGGCTGCAAATATGGCTGT+TGG - chr8_1:27738069-27738088 Msa1187820:intron 50.0%
! ATGGCTGTTGGATTGGGAAC+AGG - chr8_1:27738081-27738100 Msa1187820:intron 50.0%
ATTGGGAACAGGAGTCCCTT+GGG - chr8_1:27738092-27738111 Msa1187820:intron 50.0%
GTGCAAGGAAAATGATGCCC+CGG - chr8_1:27738119-27738138 Msa1187820:CDS 50.0%
AAAGAGCTCACCACAGGATC+CGG + chr8_1:27738141-27738160 None:intergenic 50.0%
GTGTGACAGCTGAAGCAAAC+TGG + chr8_1:27738179-27738198 None:intergenic 50.0%
GAACTGGTCGCTGGTGAATT+GGG + chr8_1:27738527-27738546 None:intergenic 50.0%
TGAACTGGTCGCTGGTGAAT+TGG + chr8_1:27738528-27738547 None:intergenic 50.0%
AATTCACCAGCGACCAGTTC+AGG - chr8_1:27738527-27738546 Msa1187820:intron 50.0%
GCTCGTTTCATTCAGAAGGG+TGG - chr8_1:27738567-27738586 Msa1187820:intron 50.0%
! GTCCAAAGTTGGTTCCTCCA+TGG + chr8_1:27738769-27738788 None:intergenic 50.0%
ACCAACTTTGGACGATCAGC+TGG - chr8_1:27738776-27738795 Msa1187820:intron 50.0%
ACCAGCTGATCGTCCAAAGT+TGG + chr8_1:27738780-27738799 None:intergenic 50.0%
AACTTTGGACGATCAGCTGG+TGG - chr8_1:27738779-27738798 Msa1187820:intron 50.0%
GGATCATTTCAACCCCTGAG+TGG - chr8_1:27739017-27739036 Msa1187820:CDS 50.0%
CAAGCGATGTGAGCATGCTT+TGG - chr8_1:27739174-27739193 Msa1187820:intron 50.0%
CTGCAGAGAATACATGAGCC+TGG + chr8_1:27739360-27739379 None:intergenic 50.0%
CAGGCTCATGTATTCTCTGC+AGG - chr8_1:27739358-27739377 Msa1187820:intron 50.0%
AGGATGCTTATGGACCATGG+AGG + chr8_1:27739469-27739488 None:intergenic 50.0%
GGAAGGATGCTTATGGACCA+TGG + chr8_1:27739472-27739491 None:intergenic 50.0%
GATGGCCTGACTGAAGATCT+AGG + chr8_1:27740011-27740030 None:intergenic 50.0%
! GCCGTCCATGTGTTTGCTAA+CGG - chr8_1:27740356-27740375 Msa1187820:five_prime_UTR 50.0%
CCCGTTAGCAAACACATGGA+CGG + chr8_1:27740360-27740379 None:intergenic 50.0%
! CCGTCCATGTGTTTGCTAAC+GGG - chr8_1:27740357-27740376 Msa1187820:five_prime_UTR 50.0%
GGGCCAGTTAATCTACATGC+TGG - chr8_1:27740522-27740541 Msa1187820:intron 50.0%
TCAAGACCATGGAGCACAAC+TGG + chr8_1:27740785-27740804 None:intergenic 50.0%
! GCCTGGAGGTTTGAAGTTTG+TGG + chr8_1:27741122-27741141 None:intergenic 50.0%
GCGTGTTAAAAGAAGCCTGG+AGG + chr8_1:27741136-27741155 None:intergenic 50.0%
CAGGCGTGTTAAAAGAAGCC+TGG + chr8_1:27741139-27741158 None:intergenic 50.0%
! GGCTTCTTTTAACACGCCTG+AGG - chr8_1:27741139-27741158 Msa1187820:intron 50.0%
TTTAACACGCCTGAGGGCAA+CGG - chr8_1:27741146-27741165 Msa1187820:intron 50.0%
CTTCCTAGGTCCAAAGCCAA+TGG + chr8_1:27741173-27741192 None:intergenic 50.0%
!! GGCTTTGGACCTAGGAAGTA+TGG - chr8_1:27741175-27741194 Msa1187820:intron 50.0%
! GGACCTAGGAAGTATGGGTA+AGG - chr8_1:27741181-27741200 Msa1187820:intron 50.0%
GTATGGGTAAGGGCCAAGTA+TGG - chr8_1:27741192-27741211 Msa1187820:intron 50.0%
! AGACCTGCAAAGTGCCAACT+TGG - chr8_1:27741296-27741315 Msa1187820:five_prime_UTR 50.0%
! CAACCAAGTTGGCACTTTGC+AGG + chr8_1:27741302-27741321 None:intergenic 50.0%
! GCAAAGTGCCAACTTGGTTG+TGG - chr8_1:27741302-27741321 Msa1187820:five_prime_UTR 50.0%
TGGGTTGTCCACAACCAAGT+TGG + chr8_1:27741313-27741332 None:intergenic 50.0%
GTGGACAACCCACTCAAAGA+TGG - chr8_1:27741321-27741340 Msa1187820:five_prime_UTR 50.0%
GTCGCAGGTATCATGTTCCA+AGG - chr8_1:27741889-27741908 Msa1187820:five_prime_UTR 50.0%
!! GTTGGCTTTAGCCATGACCT+TGG + chr8_1:27741909-27741928 None:intergenic 50.0%
AAGAACTTGGCGGGAATCCT+TGG - chr8_1:27741952-27741971 Msa1187820:intron 50.0%
!! TCTGGCTTTGCCTGAAACGA+GGG - chr8_1:27742054-27742073 Msa1187820:five_prime_UTR 50.0%
CGAATATGGACCAGAGAGCG+GGG - chr8_1:27738014-27738033 Msa1187820:intron 55.0%
GATTGGGAACAGGAGTCCCT+TGG - chr8_1:27738091-27738110 Msa1187820:intron 55.0%
AGTCCCTTGGGTGATGTGCA+AGG - chr8_1:27738104-27738123 Msa1187820:intron 55.0%
AAATGATGCCCCGGATCCTG+TGG - chr8_1:27738128-27738147 Msa1187820:CDS 55.0%
AAGAGCTCACCACAGGATCC+GGG + chr8_1:27738140-27738159 None:intergenic 55.0%
CAAGACTCCGTCCACATGCT+AGG + chr8_1:27738380-27738399 None:intergenic 55.0%
CTAGCATGTGGACGGAGTCT+TGG - chr8_1:27738378-27738397 Msa1187820:CDS 55.0%
ATGTGGACGGAGTCTTGGAG+TGG - chr8_1:27738383-27738402 Msa1187820:CDS 55.0%
CTAGATCCTGAACTGGTCGC+TGG + chr8_1:27738536-27738555 None:intergenic 55.0%
! GGCACTATGACTTGCCTCCA+TGG - chr8_1:27739452-27739471 Msa1187820:five_prime_UTR 55.0%
GGTGGGAACTCAAACGTCAG+TGG - chr8_1:27739804-27739823 Msa1187820:five_prime_UTR 55.0%
GCTCTTCTCAGCGTGACTGT+CGG - chr8_1:27740558-27740577 Msa1187820:five_prime_UTR 55.0%
ACTGGTCCAGTTGTGCTCCA+TGG - chr8_1:27740776-27740795 Msa1187820:intron 55.0%
! GTGCTCCATGGTCTTGACCA+TGG - chr8_1:27740788-27740807 Msa1187820:intron 55.0%
TCGGTCCATGGTCAAGACCA+TGG + chr8_1:27740796-27740815 None:intergenic 55.0%
! TGGTCTTGACCATGGACCGA+AGG - chr8_1:27740796-27740815 Msa1187820:intron 55.0%
!! GGACCATTGGCTTTGGACCT+AGG - chr8_1:27741167-27741186 Msa1187820:intron 55.0%
GGCCCTTACCCATACTTCCT+AGG + chr8_1:27741187-27741206 None:intergenic 55.0%
!! CTCTGGCTTTGCCTGAAACG+AGG - chr8_1:27742053-27742072 Msa1187820:five_prime_UTR 55.0%
ACCAAGGCTACCCTCGTTTC+AGG + chr8_1:27742067-27742086 None:intergenic 55.0%
AGAGCTCACCACAGGATCCG+GGG + chr8_1:27738139-27738158 None:intergenic 60.0%
! AAGGGTCGGCATTTGGGACG+AGG - chr8_1:27740475-27740494 Msa1187820:intron 60.0%
CAGCGTGACTGTCGGATTGC+CGG - chr8_1:27740566-27740585 Msa1187820:five_prime_UTR 60.0%
ACATGGGAGACGGGGATCAC+TGG - chr8_1:27740758-27740777 Msa1187820:intron 60.0%
GCGACAGATCCTTCGGTCCA+TGG + chr8_1:27740808-27740827 None:intergenic 60.0%
!! GGGCAACGGACCATTGGCTT+TGG - chr8_1:27741160-27741179 Msa1187820:intron 60.0%
GCCTGAAACGAGGGTAGCCT+TGG - chr8_1:27742063-27742082 Msa1187820:five_prime_UTR 60.0%
TGGACCAGAGAGCGGGGCAA+TGG - chr8_1:27738020-27738039 Msa1187820:intron 65.0%
GGACCAGAGAGCGGGGCAAT+GGG - chr8_1:27738021-27738040 Msa1187820:intron 65.0%
GGACGGAGTCTTGGAGTGGC+TGG - chr8_1:27738387-27738406 Msa1187820:CDS 65.0%
GCCTGAGGGCAACGGACCAT+TGG - chr8_1:27741154-27741173 Msa1187820:intron 65.0%
GCCAATGGTCCGTTGCCCTC+AGG + chr8_1:27741158-27741177 None:intergenic 65.0%
GCTCCCATTGCCCCGCTCTC+TGG + chr8_1:27738027-27738046 None:intergenic 70.0%
AGCGGGGCAATGGGAGCTGC+TGG - chr8_1:27738030-27738049 Msa1187820:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 27736670 27742287 27736670 ID=Msa1187820;Name=Msa1187820
chr8_1 mRNA 27736670 27742287 27736670 ID=Msa1187820-mRNA-1;Parent=Msa1187820;Name=Msa1187820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1461|1|1|1|0.94|0.94|18|265|307
chr8_1 exon 27736670 27737061 27736670 ID=Msa1187820-mRNA-1:exon:9747;Parent=Msa1187820-mRNA-1
chr8_1 exon 27737615 27737817 27737615 ID=Msa1187820-mRNA-1:exon:9746;Parent=Msa1187820-mRNA-1
chr8_1 exon 27737897 27738010 27737897 ID=Msa1187820-mRNA-1:exon:9745;Parent=Msa1187820-mRNA-1
chr8_1 exon 27738110 27738220 27738110 ID=Msa1187820-mRNA-1:exon:9744;Parent=Msa1187820-mRNA-1
chr8_1 exon 27738370 27738479 27738370 ID=Msa1187820-mRNA-1:exon:9743;Parent=Msa1187820-mRNA-1
chr8_1 exon 27738568 27738677 27738568 ID=Msa1187820-mRNA-1:exon:9742;Parent=Msa1187820-mRNA-1
chr8_1 exon 27738977 27739152 27738977 ID=Msa1187820-mRNA-1:exon:9741;Parent=Msa1187820-mRNA-1
chr8_1 exon 27739432 27739596 27739432 ID=Msa1187820-mRNA-1:exon:9740;Parent=Msa1187820-mRNA-1
chr8_1 exon 27739717 27739835 27739717 ID=Msa1187820-mRNA-1:exon:9739;Parent=Msa1187820-mRNA-1
chr8_1 exon 27740106 27740256 27740106 ID=Msa1187820-mRNA-1:exon:9738;Parent=Msa1187820-mRNA-1
chr8_1 exon 27740346 27740451 27740346 ID=Msa1187820-mRNA-1:exon:9737;Parent=Msa1187820-mRNA-1
chr8_1 exon 27740549 27740637 27740549 ID=Msa1187820-mRNA-1:exon:9736;Parent=Msa1187820-mRNA-1
chr8_1 exon 27740808 27740951 27740808 ID=Msa1187820-mRNA-1:exon:9735;Parent=Msa1187820-mRNA-1
chr8_1 exon 27741255 27741347 27741255 ID=Msa1187820-mRNA-1:exon:9734;Parent=Msa1187820-mRNA-1
chr8_1 exon 27741445 27741511 27741445 ID=Msa1187820-mRNA-1:exon:9733;Parent=Msa1187820-mRNA-1
chr8_1 exon 27741601 27741713 27741601 ID=Msa1187820-mRNA-1:exon:9732;Parent=Msa1187820-mRNA-1
chr8_1 exon 27741813 27741908 27741813 ID=Msa1187820-mRNA-1:exon:9731;Parent=Msa1187820-mRNA-1
chr8_1 exon 27741997 27742287 27741997 ID=Msa1187820-mRNA-1:exon:9730;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27741997 27742287 27741997 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27741813 27741908 27741813 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27741601 27741713 27741601 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27741445 27741511 27741445 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27741255 27741347 27741255 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27740808 27740951 27740808 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27740549 27740637 27740549 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27740346 27740451 27740346 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27740106 27740256 27740106 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27739717 27739835 27739717 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27739432 27739596 27739432 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 five_prime_UTR 27739126 27739152 27739126 ID=Msa1187820-mRNA-1:five_prime_utr;Parent=Msa1187820-mRNA-1
chr8_1 CDS 27738977 27739125 27738977 ID=Msa1187820-mRNA-1:cds;Parent=Msa1187820-mRNA-1
chr8_1 CDS 27738568 27738677 27738568 ID=Msa1187820-mRNA-1:cds;Parent=Msa1187820-mRNA-1
chr8_1 CDS 27738370 27738479 27738370 ID=Msa1187820-mRNA-1:cds;Parent=Msa1187820-mRNA-1
chr8_1 CDS 27738110 27738220 27738110 ID=Msa1187820-mRNA-1:cds;Parent=Msa1187820-mRNA-1
chr8_1 CDS 27737897 27738010 27737897 ID=Msa1187820-mRNA-1:cds;Parent=Msa1187820-mRNA-1
chr8_1 CDS 27737615 27737817 27737615 ID=Msa1187820-mRNA-1:cds;Parent=Msa1187820-mRNA-1
chr8_1 CDS 27736935 27737061 27736935 ID=Msa1187820-mRNA-1:cds;Parent=Msa1187820-mRNA-1
chr8_1 three_prime_UTR 27736670 27736934 27736670 ID=Msa1187820-mRNA-1:three_prime_utr;Parent=Msa1187820-mRNA-1
Gene Sequence

>Msa1187820

ATGAGTCCTGTCGATTCTAGGTTCTCATGGGAGACCTATGATGAAGATCTATCTTCTCTAGACGAAAGTTCAAGGATTACAGCTGCTGGACTCTTAGAACACCTCAATGTTACAAGAGACACCAGTGACTATCTATGGTACATAACCAGTGTTGACATAAGTTCATCAGAATCATTTCTTCGAGGAGGACACAAACCCAACATTAATGTGCAGTCTGCAGGACATGCCGTCCATGTGTTTGCTAACGGGCAATTTTTAGGGTCGGCATTTGGGACGAGGAAACAGAGAAGTTGCACATTTAATGGGCCAGTTAATCTACATGCTGGAGCAAATAAAATTGCTCTTCTCAGCGTGACTGTCGGATTGCCGAACGTTGGCCGACATTATGAAACATGGGAGACGGGGATCACTGGTCCAGTTGTGCTCCATGGTCTTGACCATGGACCGAAGGATCTGTCGCATAATAAATGGTCTTATCAGGTTGGACTAAAAGGAGAGGCTGTGAATTTGGTATCACCCAATGGGGTCTCAGCTAATGATTGGGTTCAAGATTCACTAGCTACTCCAAGCCGGTCACAACTAAAATGGTACAAGGCTTCTTTTAACACGCCTGAGGGCAACGGACCATTGGCTTTGGACCTAGGAAGTATGGGTAAGGGCCAAGTATGGATAAATGGACAAAGCATAGGAAGATATTGGATGGCTTATGCAAAGGGTGACTGCAATTCCTGCAACTATTCTGGGACATTCAGACCTGCAAAGTGCCAACTTGGTTGTGGACAACCCACTCAAAGATGGTATCATGTTCCAAGGTCATGGCTAAAGCCAACAAAGAACCTAATAGTAGTGTTTGAAGAACTTGGCGGGAATCCTTGGAAAATTTCTTTGGTGAAGAGAACAGTACATACTGCCGCAGCTCGTTAG
Protein sequence

>Msa1187820

MSPVDSRFSWETYDEDLSSLDESSRITAAGLLEHLNVTRDTSDYLWYITSVDISSSESFLRGGHKPNINVQSAGHAVHVFANGQFLGSAFGTRKQRSCTFNGPVNLHAGANKIALLSVTVGLPNVGRHYETWETGITGPVVLHGLDHGPKDLSHNKWSYQVGLKGEAVNLVSPNGVSANDWVQDSLATPSRSQLKWYKASFNTPEGNGPLALDLGSMGKGQVWINGQSIGRYWMAYAKGDCNSCNYSGTFRPAKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRTVHTAAAR*