AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1283110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283110 MtrunA17_Chr3g0142001 97.720 307 7 0 1 307 427 733 0.0 625
Msa1283110 MtrunA17_Chr1g0155701 76.316 304 71 1 1 303 427 730 1.65e-169 488
Msa1283110 MtrunA17_Chr8g0372421 65.147 307 106 1 1 306 427 733 1.67e-145 430
Msa1283110 MtrunA17_Chr5g0404841 65.798 307 103 2 1 306 425 730 2.77e-139 414
Msa1283110 MtrunA17_Chr2g0299161 55.482 301 132 2 1 300 427 726 9.31e-116 350
Msa1283110 MtrunA17_Chr1g0152571 54.485 301 135 2 1 300 431 730 1.00e-114 347
Msa1283110 MtrunA17_Chr8g0342001 54.902 306 133 4 3 306 428 730 1.36e-107 332
Msa1283110 MtrunA17_Chr2g0330291 55.229 306 132 4 3 306 431 733 5.62e-106 327
Msa1283110 MtrunA17_Chr3g0130711 41.584 303 170 5 8 306 441 740 3.33e-82 263
Msa1283110 MtrunA17_Chr2g0326451 42.857 322 154 7 6 306 125 437 7.93e-80 252
Msa1283110 MtrunA17_Chr4g0029301 45.263 285 143 5 26 306 457 732 4.13e-75 246
Msa1283110 MtrunA17_Chr2g0326481 42.492 313 150 6 15 306 423 726 1.74e-72 239
Msa1283110 MtrunA17_Chr8g0378221 41.447 304 164 7 9 307 491 785 6.92e-66 221
Msa1283110 MtrunA17_Chr5g0408371 39.661 295 161 6 19 306 451 735 2.06e-64 217
Msa1283110 MtrunA17_Chr5g0406921 40.351 285 161 4 26 306 459 738 3.11e-63 213
Msa1283110 MtrunA17_Chr4g0071281 40.614 293 120 5 1 291 3 243 1.51e-62 199
Msa1283110 MtrunA17_Chr2g0301001 37.838 296 175 4 18 306 448 741 2.79e-61 208
Msa1283110 MtrunA17_Chr3g0077531 38.361 305 169 8 7 301 438 733 4.77e-59 201
Msa1283110 MtrunA17_Chr3g0124931 37.329 292 148 6 5 296 431 687 1.67e-54 188
Msa1283110 MtrunA17_Chr4g0037031 35.959 292 159 5 8 297 446 711 3.07e-54 189
Msa1283110 MtrunA17_Chr3g0130721 35.540 287 158 4 10 296 439 698 3.50e-53 185
Msa1283110 MtrunA17_Chr3g0145581 34.868 304 155 9 2 297 439 707 1.74e-50 178
Msa1283110 MtrunA17_Chr2g0326521 42.857 224 96 6 88 306 4 200 3.51e-50 168
Msa1283110 MtrunA17_Chr2g0307981 33.218 289 150 10 8 288 38 291 9.94e-35 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283110 AT1G45130.2 68.475 295 93 0 8 302 359 653 8.59e-146 425
Msa1283110 AT1G45130.1 68.475 295 93 0 8 302 438 732 8.21e-145 425
Msa1283110 AT4G36360.2 63.961 308 110 1 1 307 432 739 5.00e-144 427
Msa1283110 AT4G36360.1 63.961 308 110 1 1 307 432 739 5.83e-144 426
Msa1283110 AT4G26140.1 52.159 301 141 3 1 300 428 726 3.15e-110 336
Msa1283110 AT3G13750.1 55.556 306 131 4 3 306 437 739 7.57e-110 338
Msa1283110 AT5G56870.1 54.153 301 135 3 1 300 426 724 3.94e-109 333
Msa1283110 AT3G52840.1 52.492 301 141 2 1 300 426 725 7.01e-109 332
Msa1283110 AT3G52840.2 52.492 301 141 2 1 300 480 779 1.39e-108 333
Msa1283110 AT4G26140.7 48.160 326 141 4 1 300 428 751 1.68e-104 322
Msa1283110 AT4G26140.9 44.863 292 133 4 1 266 428 717 1.39e-84 269
Msa1283110 AT5G63810.1 43.377 302 162 4 6 301 440 738 1.08e-81 262
Msa1283110 AT2G28470.1 44.178 292 152 5 12 299 451 735 1.08e-76 251
Msa1283110 AT2G28470.3 44.178 292 152 5 12 299 451 735 1.08e-76 251
Msa1283110 AT2G28470.2 44.178 292 152 5 12 299 445 729 1.11e-76 250
Msa1283110 AT2G28470.4 44.178 292 152 5 12 299 445 729 1.11e-76 250
Msa1283110 AT5G20710.2 39.936 313 176 7 3 307 226 534 2.41e-67 221
Msa1283110 AT5G20710.1 39.936 313 176 7 3 307 431 739 3.21e-66 222
Msa1283110 AT2G32810.1 43.003 293 155 7 9 296 470 755 3.65e-66 223
Msa1283110 AT2G32810.2 43.003 293 155 7 9 296 470 755 4.28e-66 222
Msa1283110 AT1G77410.2 42.069 290 132 8 10 296 330 586 2.06e-61 207
Msa1283110 AT1G77410.4 42.069 290 132 8 10 296 330 586 2.06e-61 207
Msa1283110 AT1G77410.3 42.069 290 132 8 10 296 441 697 8.27e-61 207
Msa1283110 AT1G77410.1 42.069 290 132 8 10 296 436 692 8.45e-61 207
Msa1283110 AT2G28470.5 42.412 257 137 5 12 264 451 700 8.13e-60 203
Msa1283110 AT5G63800.1 39.583 288 147 5 9 296 442 702 4.27e-59 201
Msa1283110 AT4G26140.6 45.226 199 107 2 1 199 428 624 1.50e-55 190
Msa1283110 AT4G26140.3 45.226 199 107 2 1 199 426 622 1.59e-55 190
Msa1283110 AT4G26140.2 45.226 199 107 2 1 199 426 622 1.59e-55 190
Msa1283110 AT2G16730.1 37.891 256 135 4 32 286 476 708 1.51e-52 184
Msa1283110 AT4G35010.1 34.507 284 157 7 5 286 449 705 2.46e-48 173
Msa1283110 AT4G38590.1 34.386 285 157 6 8 289 382 639 1.38e-47 171
Msa1283110 AT1G31740.1 35.154 293 142 7 3 291 429 677 1.15e-42 156
Msa1283110 AT4G38590.2 32.982 285 157 7 8 289 450 703 2.36e-42 156
Msa1283110 AT4G26140.8 44.715 123 67 1 1 123 428 549 3.12e-31 123
Msa1283110 AT4G26140.4 37.162 148 67 2 1 123 428 574 2.36e-26 109
Msa1283110 AT4G26140.5 37.162 148 67 2 1 123 428 574 2.36e-26 109
Msa1283110 AT2G04060.1 30.455 220 117 4 14 233 132 315 2.38e-20 91.3

Find 225 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAAGGTTTACAGATTT+TGG 0.145312 8_3:+24346908 Msa1283110:intron
CTAGGCTTATATGGTTTATT+TGG 0.151791 8_3:-24346769 None:intergenic
TCCTTCAAATGACTATATTT+TGG 0.162196 8_3:-24347546 None:intergenic
CCTAAACTGGGCTGCAAATA+TGG 0.190750 8_3:+24346472 Msa1283110:five_prime_UTR
TGCAATTCCTGCAACTATTC+TGG 0.212314 8_3:+24349676 Msa1283110:CDS
CAAAGAAGAATTCTAATTTC+TGG 0.218304 8_3:+24345319 Msa1283110:five_prime_UTR
TAAATTACAAATGATATTCT+AGG 0.219127 8_3:-24350612 None:intergenic
CAGAGAAGTTGCACATTTAA+TGG 0.237000 8_3:+24348911 Msa1283110:CDS
TTATAGACACTTATGTCTTC+TGG 0.248647 8_3:+24345507 Msa1283110:five_prime_UTR
GGCTTTGGACCTAGGAAGTA+TGG 0.252554 8_3:+24349585 Msa1283110:CDS
TTCTAGATTGAGAACGAATA+TGG 0.253847 8_3:+24346410 Msa1283110:intron
CTGGTCATGCATACCTAAAC+TGG 0.257224 8_3:+24346459 Msa1283110:five_prime_UTR
GTTGAACAGGTTGGACTAAA+AGG 0.259985 8_3:+24349348 Msa1283110:intron
GTTCTTCAAACACTACTATT+AGG 0.264193 8_3:-24350345 None:intergenic
CATACTTCAGGGGTGCTTCT+TGG 0.275672 8_3:-24345355 None:intergenic
AAAAGGAGAGGCTGTGAATT+TGG 0.279573 8_3:+24349365 Msa1283110:CDS
CAGAAATTAGAATTCTTCTT+TGG 0.285761 8_3:-24345318 None:intergenic
ATCCGTTCTGAAGCTTATTC+CGG 0.289249 8_3:-24345884 None:intergenic
TGAACTGGTCGCTGGTGAAT+TGG 0.296094 8_3:-24346935 None:intergenic
CATACCTGAGAGAGAATTAT+TGG 0.300613 8_3:-24346095 None:intergenic
ACCAAGGCTACCCTCGTTTC+AGG 0.301207 8_3:-24350474 None:intergenic
CCATATTTGCAGCCCAGTTT+AGG 0.306276 8_3:-24346472 None:intergenic
GAATCCTTGGAAAATTTCTT+TGG 0.309226 8_3:+24350375 Msa1283110:CDS
GTTCATGTGTGGTGTGAAAA+TGG 0.313581 8_3:+24345092 Msa1283110:five_prime_UTR
AAATGAGTCCTGTCGATTCT+AGG 0.326359 8_3:+24348240 Msa1283110:exon
GCTCCAGCATGTAGATTAAC+TGG 0.327345 8_3:-24348935 None:intergenic
CAACCAAGTTGGCACTTTGC+AGG 0.328605 8_3:-24349709 None:intergenic
TTCTTACCATATTCATCAAT+TGG 0.333167 8_3:-24347246 None:intergenic
GTCCACATGCTAGGCTTATA+TGG 0.334733 8_3:-24346778 None:intergenic
GCATAATAAATGGTCTTATC+AGG 0.334788 8_3:+24349236 Msa1283110:CDS
CAAGCCGGTCACAACTAAAA+TGG 0.339053 8_3:+24349442 Msa1283110:CDS
AAGGGCCAAGTATGGATAAA+TGG 0.348408 8_3:+24349610 Msa1283110:CDS
TGCAAATATGGCTGTTGGAT+TGG 0.363301 8_3:+24346484 Msa1283110:five_prime_UTR
GACAAAGCATAGGAAGATAT+TGG 0.368369 8_3:+24349632 Msa1283110:CDS
CAGCGTGACTGTCGGATTGC+CGG 0.369336 8_3:+24348976 Msa1283110:CDS
AGAGAAGTTGCACATTTAAT+GGG 0.370621 8_3:+24348912 Msa1283110:CDS
TGAAAAGCTGTTTCAGTCTC+AGG 0.371686 8_3:+24346067 Msa1283110:five_prime_UTR
GAGACACCAGCGACTATCTA+TGG 0.372196 8_3:+24348357 Msa1283110:CDS
TCCGTTCTGAAGCTTATTCC+GGG 0.373173 8_3:-24345883 None:intergenic
AGGATCTGTCGCATAATAAA+TGG 0.374726 8_3:+24349226 Msa1283110:CDS
GATGCTCCAATTGATGAATA+TGG 0.376118 8_3:+24347240 Msa1283110:five_prime_UTR
GATCCTACTGTTACACCATT+AGG 0.383098 8_3:+24347615 Msa1283110:five_prime_UTR
TATATAAAATCATGGTGGTT+TGG 0.385322 8_3:-24350579 None:intergenic
GCAATCAGGAAGGATACTTA+TGG 0.386473 8_3:-24347886 None:intergenic
AAAGAGCTCACCACAGGATC+CGG 0.390775 8_3:-24346548 None:intergenic
AACATCAAGACCACCATGTT+TGG 0.392980 8_3:-24345486 None:intergenic
TCAAGACCATGGAGCACAAC+TGG 0.398051 8_3:-24349192 None:intergenic
TTCCACTCAGCGCATATATA+AGG 0.400728 8_3:-24345737 None:intergenic
ACCTGCTGAAGTGTTCCTAA+TGG 0.401362 8_3:-24347630 None:intergenic
CACTATGTTTAGGTTTGGTC+AGG 0.404037 8_3:+24347520 Msa1283110:intron
AAGAACTTGGCGGGAATCCT+TGG 0.405390 8_3:+24350362 Msa1283110:CDS
TTTGTATGTAGCTTCACTTA+GGG 0.406029 8_3:+24350524 Msa1283110:three_prime_UTR
AAGGAAGATATGATTTAGTA+AGG 0.409592 8_3:+24345663 Msa1283110:five_prime_UTR
TGAGCATGCTTTGGTTTCTT+CGG 0.409709 8_3:+24347593 Msa1283110:five_prime_UTR
GTTTGTATGTAGCTTCACTT+AGG 0.414133 8_3:+24350523 Msa1283110:three_prime_UTR
ACTACTATTAGGTTCTTTGT+TGG 0.415891 8_3:-24350334 None:intergenic
GATTGGGAACAGGAGTCCCT+TGG 0.418192 8_3:+24346501 Msa1283110:five_prime_UTR
TATAGACACTTATGTCTTCT+GGG 0.418303 8_3:+24345508 Msa1283110:five_prime_UTR
ATATGCGCTGAGTGGAACTT+TGG 0.418404 8_3:+24345743 Msa1283110:five_prime_UTR
CTACAGATTAATTCATGTAA+TGG 0.419307 8_3:+24346724 Msa1283110:intron
CTTCTCTAGACGAAAGTTCA+AGG 0.419593 8_3:+24348294 Msa1283110:CDS
GGGCAACGAACCATTGGCTT+TGG 0.420385 8_3:+24349570 Msa1283110:CDS
ATGGGGTCTCAGCTAATGAT+TGG 0.421674 8_3:+24349397 Msa1283110:CDS
GAACTGGTCGCTGGTGAATT+GGG 0.422236 8_3:-24346934 None:intergenic
AACGGATAACGGACCTTTCA+AGG 0.423232 8_3:+24345900 Msa1283110:five_prime_UTR
TACATTTGCAGTATTAAATA+CGG 0.423954 8_3:-24347916 None:intergenic
CCGTCCATGTGTTTGCTAAC+GGG 0.424113 8_3:+24348767 Msa1283110:CDS
CAAGCGATGTGAGCATGCTT+TGG 0.424324 8_3:+24347584 Msa1283110:five_prime_UTR
GTATGGGTAAGGGCCAAGTA+TGG 0.425767 8_3:+24349602 Msa1283110:CDS
GTATTCTCTGCAGGAACTAC+AGG 0.432210 8_3:+24347777 Msa1283110:five_prime_UTR
GCAATTCCTGCAACTATTCT+GGG 0.432599 8_3:+24349677 Msa1283110:CDS
CTGTCGATTCTAGGTTCTCA+TGG 0.435814 8_3:+24348249 Msa1283110:CDS
GCAAATATGGCTGTTGGATT+GGG 0.435937 8_3:+24346485 Msa1283110:five_prime_UTR
AAGTTCACTCGCGAATTCTC+TGG 0.443666 8_3:+24350446 Msa1283110:three_prime_UTR
GAATGTCCCAGAATAGTTGC+AGG 0.446858 8_3:-24349683 None:intergenic
TTTGTCCATTTATCCATACT+TGG 0.449902 8_3:-24349615 None:intergenic
ACGAATATGGACCAGAGAGC+GGG 0.449957 8_3:+24346423 Msa1283110:five_prime_UTR
AATTCACCAGCGACCAGTTC+AGG 0.450278 8_3:+24346937 Msa1283110:five_prime_UTR
GGCACATACTTCAACCAAAC+AGG 0.450745 8_3:-24345862 None:intergenic
CAGGCTCATGTATTCTCTGC+AGG 0.451671 8_3:+24347768 Msa1283110:intron
GCAGACTGCACATTAATGTT+GGG 0.452299 8_3:-24348736 None:intergenic
AATACGGAAGTTATGCAATC+AGG 0.453209 8_3:-24347900 None:intergenic
ACAATGTTGTTACTACTACT+AGG 0.454031 8_3:-24345231 None:intergenic
AGCGGGGCAATGGGAGCTGC+TGG 0.456168 8_3:+24346440 Msa1283110:five_prime_UTR
TCTAGCAAACTATCATCTAA+AGG 0.456243 8_3:+24347812 Msa1283110:five_prime_UTR
TCTAAAGGCTGCTGCTACTG+TGG 0.460350 8_3:+24347827 Msa1283110:five_prime_UTR
TACCATGGAGGAACCAACTT+TGG 0.460352 8_3:+24347174 Msa1283110:five_prime_UTR
ATAAGGTCCAATGCGGAGAT+TGG 0.463256 8_3:-24345720 None:intergenic
TGAATTTGGTATCACCCAAT+GGG 0.463630 8_3:+24349379 Msa1283110:CDS
AGACCTGCAAAGTGCCAACT+TGG 0.468347 8_3:+24349706 Msa1283110:CDS
AACATTAATGTGCAGTCTGC+AGG 0.468569 8_3:+24348739 Msa1283110:CDS
ACGGACAAAGGTGAAACTTA+AGG 0.469754 8_3:-24347136 None:intergenic
TATTGGATGGCTTATGCAAA+GGG 0.471536 8_3:+24349649 Msa1283110:CDS
TTATTATGCGACAGATCCTT+CGG 0.472013 8_3:-24349222 None:intergenic
ATTAAGGGTATTACATTGCC+AGG 0.472942 8_3:-24345548 None:intergenic
ATGGCTGTTGGATTGGGAAC+AGG 0.475126 8_3:+24346491 Msa1283110:five_prime_UTR
AGTTGCTCGTTTCATTCAGA+AGG 0.475641 8_3:+24346973 Msa1283110:five_prime_UTR
CATTATGAAACATGGGAGAC+GGG 0.480780 8_3:+24349159 Msa1283110:CDS
GGACCAGAGAGCGGGGCAAT+GGG 0.481155 8_3:+24346431 Msa1283110:five_prime_UTR
CTTTATGCCAATCTCCGCAT+TGG 0.482995 8_3:+24345713 Msa1283110:five_prime_UTR
TATGCGCTGAGTGGAACTTT+GGG 0.484699 8_3:+24345744 Msa1283110:five_prime_UTR
TGCAGACTGCACATTAATGT+TGG 0.486330 8_3:-24348737 None:intergenic
GAACCATTGGCTTTGGACCT+AGG 0.487914 8_3:+24349577 Msa1283110:CDS
AGTTCAAGGATTACAGCTGC+TGG 0.488592 8_3:+24348308 Msa1283110:CDS
GGTGTAGAGGAATTCCTGTT+TGG 0.489840 8_3:+24345848 Msa1283110:intron
CAATGTTGTTACTACTACTA+GGG 0.491765 8_3:-24345230 None:intergenic
AGAAAGTCTCTTCTCATCAA+TGG 0.493105 8_3:+24345295 Msa1283110:five_prime_UTR
GCAAATGCTAGATCCTGAAC+TGG 0.493575 8_3:-24346950 None:intergenic
TCATAGCTTGTAGTAATGAA+TGG 0.494227 8_3:-24347213 None:intergenic
ATTGGGAACAGGAGTCCCTT+GGG 0.494679 8_3:+24346502 Msa1283110:five_prime_UTR
TCTTCTTCTTCTTTGAGACA+TGG 0.494763 8_3:+24345183 Msa1283110:five_prime_UTR
ACATGGGAGACGGGGATCAC+TGG 0.494793 8_3:+24349168 Msa1283110:CDS
ACTGGTCCAGTTGTGCTCCA+TGG 0.498783 8_3:+24349186 Msa1283110:CDS
AGAAGATAGATCTTCATCAT+AGG 0.502038 8_3:-24348276 None:intergenic
TGGTCCAATAATTCTCTCTC+AGG 0.502761 8_3:+24346091 Msa1283110:five_prime_UTR
GCCAATGGTTCGTTGCCCTC+AGG 0.502891 8_3:-24349565 None:intergenic
ACCAACTTTGGACGATCAGC+TGG 0.503084 8_3:+24347186 Msa1283110:five_prime_UTR
TGGGTTTAGGCTGCAATGCA+AGG 0.504866 8_3:+24346011 Msa1283110:intron
TCATTAGCTGAGACCCCATT+GGG 0.506426 8_3:-24349393 None:intergenic
GGCCCTTACCCATACTTCCT+AGG 0.508915 8_3:-24349594 None:intergenic
TGGACCAGAGAGCGGGGCAA+TGG 0.509550 8_3:+24346430 Msa1283110:five_prime_UTR
GATGTTCATGAACCATCTCC+TGG 0.509570 8_3:+24345530 Msa1283110:five_prime_UTR
ATAGTAGTGTTTGAAGAACT+TGG 0.510118 8_3:+24350349 Msa1283110:CDS
GGACCTAGGAAGTATGGGTA+AGG 0.511953 8_3:+24349591 Msa1283110:CDS
GCCTGAGGGCAACGAACCAT+TGG 0.512441 8_3:+24349564 Msa1283110:CDS
AAGGGTCGGCATTTGGGACG+AGG 0.513971 8_3:+24348885 Msa1283110:intron
GTTGGCTTTAGCCATGACCT+TGG 0.514639 8_3:-24350316 None:intergenic
GGTATTACATTGCCAGGAGA+TGG 0.515365 8_3:-24345542 None:intergenic
AAGAGCTCACCACAGGATCC+GGG 0.516437 8_3:-24346547 None:intergenic
CTAGCATGTGGACGGAGTCT+TGG 0.516868 8_3:+24346788 Msa1283110:five_prime_UTR
GAAAATTACAATCTTAAGAC+GGG 0.517094 8_3:+24350675 Msa1283110:three_prime_UTR
GCCGTCCATGTGTTTGCTAA+CGG 0.518416 8_3:+24348766 Msa1283110:CDS
TGGGGTCTCAGCTAATGATT+GGG 0.518992 8_3:+24349398 Msa1283110:CDS
ATAAGCTTCAGAACGGATAA+CGG 0.519465 8_3:+24345889 Msa1283110:five_prime_UTR
ACCATTAGGAACACTTCAGC+AGG 0.524150 8_3:+24347629 Msa1283110:five_prime_UTR
ATCATTAGCTGAGACCCCAT+TGG 0.526712 8_3:-24349394 None:intergenic
GGCACTATGACTTGCCTCCA+TGG 0.528134 8_3:+24347862 Msa1283110:five_prime_UTR
GCCAAAATATAGTCATTTGA+AGG 0.528138 8_3:+24347545 Msa1283110:five_prime_UTR
CAAGACTCCGTCCACATGCT+AGG 0.528557 8_3:-24346787 None:intergenic
GGTGCTTCTTGGATAGTGAA+TGG 0.529489 8_3:-24345344 None:intergenic
GTGAATTTGGTATCACCCAA+TGG 0.529765 8_3:+24349378 Msa1283110:CDS
GCGACAGATCCTTCGGTCCA+TGG 0.535103 8_3:-24349215 None:intergenic
TGGGCTGCAAATATGGCTGT+TGG 0.538441 8_3:+24346479 Msa1283110:five_prime_UTR
TAGTGTTTGAAGAACTTGGC+GGG 0.545727 8_3:+24350353 Msa1283110:CDS
GCAAAGTGCCAACTTGGTTG+TGG 0.547646 8_3:+24349712 Msa1283110:CDS
TCTGGCTTTGCCTGAAACGA+GGG 0.548463 8_3:+24350464 Msa1283110:three_prime_UTR
TCTCCCATGTTTCATAATGT+CGG 0.551448 8_3:-24349155 None:intergenic
CTCTGGCTTTGCCTGAAACG+AGG 0.552043 8_3:+24350463 Msa1283110:three_prime_UTR
ACCAGCTGATCGTCCAAAGT+TGG 0.553003 8_3:-24347187 None:intergenic
AAAATTGTACCATCTTTGAG+TGG 0.553803 8_3:-24349740 None:intergenic
GGGCCAGTTAATCTACATGC+TGG 0.558839 8_3:+24348932 Msa1283110:CDS
AGAAAATTACAATCTTAAGA+CGG 0.559403 8_3:+24350674 Msa1283110:three_prime_UTR
GCTCTTCTCAGCGTGACTGT+CGG 0.563832 8_3:+24348968 Msa1283110:CDS
GGTACTATAATTTATCATAA+CGG 0.563931 8_3:-24347155 None:intergenic
CATGAGAACCTAGAATCGAC+AGG 0.568957 8_3:-24348248 None:intergenic
GGACGGAGTCTTGGAGTGGC+TGG 0.569999 8_3:+24346797 Msa1283110:five_prime_UTR
GTTCCTAATGGTGTAACAGT+AGG 0.571055 8_3:-24347618 None:intergenic
GGTATCATGTTCCAAGGTCA+TGG 0.571810 8_3:+24350305 Msa1283110:intron
AAATTGTACCATCTTTGAGT+GGG 0.574497 8_3:-24349739 None:intergenic
GCTCGTTTCATTCAGAAGGG+TGG 0.575864 8_3:+24346977 Msa1283110:five_prime_UTR
CTAGATCCTGAACTGGTCGC+TGG 0.577176 8_3:-24346943 None:intergenic
TATGTACCATAGATAGTCGC+TGG 0.579264 8_3:-24348363 None:intergenic
TCATCAGAATCATTTCTTCG+AGG 0.581779 8_3:+24348703 Msa1283110:CDS
GTGCTCCATGGTCTTGACCA+TGG 0.585112 8_3:+24349198 Msa1283110:CDS
GCTTTGGACCTAGGAAGTAT+GGG 0.586075 8_3:+24349586 Msa1283110:CDS
TTGTATGTAGCTTCACTTAG+GGG 0.586985 8_3:+24350525 Msa1283110:three_prime_UTR
GTCCAAAGTTGGTTCCTCCA+TGG 0.588793 8_3:-24347176 None:intergenic
GTTGCTCGTTTCATTCAGAA+GGG 0.589466 8_3:+24346974 Msa1283110:five_prime_UTR
ATATTGGATGGCTTATGCAA+AGG 0.589804 8_3:+24349648 Msa1283110:CDS
TGGTGTCTCTTGTAACATTG+AGG 0.590267 8_3:-24348343 None:intergenic
TTGGCCGACATTATGAAACA+TGG 0.592890 8_3:+24349151 Msa1283110:CDS
TCAGAATCATTTCTTCGAGG+AGG 0.593391 8_3:+24348706 Msa1283110:CDS
TGGATAAATGGACAAAGCAT+AGG 0.594045 8_3:+24349622 Msa1283110:CDS
TCGGTCCATGGTCAAGACCA+TGG 0.594522 8_3:-24349203 None:intergenic
AGTCCCTTGGGTGATGTGCA+AGG 0.594773 8_3:+24346514 Msa1283110:five_prime_UTR
GTGGACAACCCACTCAAAGA+TGG 0.595248 8_3:+24349731 Msa1283110:CDS
GTTTGGTTGAAGTATGTGCC+CGG 0.595819 8_3:+24345865 Msa1283110:five_prime_UTR
ACATTATGAAACATGGGAGA+CGG 0.597371 8_3:+24349158 Msa1283110:CDS
TGTCGATTCTAGGTTCTCAT+GGG 0.600914 8_3:+24348250 Msa1283110:CDS
TGGTCTTGACCATGGACCGA+AGG 0.602007 8_3:+24349206 Msa1283110:CDS
GTGCAAGGAAAATGATGCCC+CGG 0.603150 8_3:+24346529 Msa1283110:five_prime_UTR
ATTCACTAGCTACTCCAAGC+CGG 0.607564 8_3:+24349427 Msa1283110:CDS
CTTCCTAGGTCCAAAGCCAA+TGG 0.611721 8_3:-24349580 None:intergenic
GTCGCAGGTATCATGTTCCA+AGG 0.612046 8_3:+24350299 Msa1283110:intron
ACTATCTATGGTACATAACC+AGG 0.614868 8_3:+24348369 Msa1283110:CDS
CTAATTAAGAAAGCCAAACA+TGG 0.617287 8_3:+24345473 Msa1283110:five_prime_UTR
AAGCATAGGAAGATATTGGA+TGG 0.618267 8_3:+24349636 Msa1283110:CDS
CCCGTTAGCAAACACATGGA+CGG 0.620558 8_3:-24348767 None:intergenic
ATTATGAAACATGGGAGACG+GGG 0.624351 8_3:+24349160 Msa1283110:CDS
CGAATATGGACCAGAGAGCG+GGG 0.624874 8_3:+24346424 Msa1283110:five_prime_UTR
AACGAATATGGACCAGAGAG+CGG 0.624993 8_3:+24346422 Msa1283110:five_prime_UTR
GACCTAGGAAGTATGGGTAA+GGG 0.625201 8_3:+24349592 Msa1283110:CDS
TATGATAAATTATAGTACCA+TGG 0.626716 8_3:+24347159 Msa1283110:five_prime_UTR
TAATTTATCATAACGGACAA+AGG 0.628776 8_3:-24347148 None:intergenic
TGGGTTGTCCACAACCAAGT+TGG 0.630478 8_3:-24349720 None:intergenic
TTTCCTTGCACATCACCCAA+GGG 0.630779 8_3:-24346517 None:intergenic
AGAGCTCACCACAGGATCCG+GGG 0.631333 8_3:-24346546 None:intergenic
GAAAAGCTGTTTCAGTCTCA+GGG 0.631820 8_3:+24346068 Msa1283110:five_prime_UTR
CTCATATGTGAATTACTACA+TGG 0.632328 8_3:+24347000 Msa1283110:five_prime_UTR
GGAAGGATACTTATGGACCA+TGG 0.637248 8_3:-24347879 None:intergenic
CGGAAGTTATGCAATCAGGA+AGG 0.637295 8_3:-24347896 None:intergenic
TGGTCATGCATACCTAAACT+GGG 0.638626 8_3:+24346460 Msa1283110:five_prime_UTR
AACTTTGGACGATCAGCTGG+TGG 0.640845 8_3:+24347189 Msa1283110:five_prime_UTR
GTCACAACTAAAATGGTACA+AGG 0.642717 8_3:+24349449 Msa1283110:CDS
AACCATATAAGCCTAGCATG+TGG 0.643949 8_3:+24346776 Msa1283110:five_prime_UTR
GTAGTGTTTGAAGAACTTGG+CGG 0.651378 8_3:+24350352 Msa1283110:CDS
ATATAAGCCTAGCATGTGGA+CGG 0.652636 8_3:+24346780 Msa1283110:five_prime_UTR
CTACTAGACAAGTTCATGTG+TGG 0.655745 8_3:+24345081 None:intergenic
GACCTTATATATGCGCTGAG+TGG 0.656602 8_3:+24345735 Msa1283110:five_prime_UTR
AAATGATGCCCCGGATCCTG+TGG 0.661573 8_3:+24346538 Msa1283110:five_prime_UTR
GCCCGGAATAAGCTTCAGAA+CGG 0.662264 8_3:+24345882 Msa1283110:five_prime_UTR
ATTGCCCGTTAGCAAACACA+TGG 0.666309 8_3:-24348771 None:intergenic
TTGAGTTCACTAACGAGCTG+CGG 0.670744 8_3:-24350419 None:intergenic
GGTGGGAACTCAAACGTCAG+TGG 0.672709 8_3:+24348214 Msa1283110:intron
TTATATAACTTATTGCACCA+AGG 0.676455 8_3:-24350490 None:intergenic
TGGCCGACATTATGAAACAT+GGG 0.682911 8_3:+24349152 Msa1283110:CDS
CGCATATATAAGGTCCAATG+CGG 0.688851 8_3:-24345727 None:intergenic
CAATTGCAAACATACTTCAG+GGG 0.689900 8_3:-24345365 None:intergenic
ATTAAGAAAGCCAAACATGG+TGG 0.693632 8_3:+24345476 Msa1283110:five_prime_UTR
ATGTGGACGGAGTCTTGGAG+TGG 0.699415 8_3:+24346793 Msa1283110:five_prime_UTR
ACAGGTTGGACTAAAAGGAG+AGG 0.707740 8_3:+24349353 Msa1283110:intron
GAATTTGGTATCACCCAATG+GGG 0.708312 8_3:+24349380 Msa1283110:CDS
GATAAATTATAGTACCATGG+AGG 0.734146 8_3:+24347162 Msa1283110:five_prime_UTR
AAGCTGTTTCAGTCTCAGGG+TGG 0.745842 8_3:+24346071 Msa1283110:five_prime_UTR
AGGATACTTATGGACCATGG+AGG 0.747272 8_3:-24347876 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATTTTTTTTT+GGG + chr8_3:24345992-24346011 Msa1283110:intron 0.0%
!! TTTACAATATTATTCTTTAA+TGG + chr8_3:24345827-24345846 Msa1283110:intron 10.0%
!! ATATTATCAATATTTCAAAA+TGG + chr8_3:24349875-24349894 Msa1283110:intron 10.0%
!! AAAAAGGAATGAAATTAAAA+TGG - chr8_3:24345790-24345809 None:intergenic 15.0%
!!! TCTTTGATTTTATGATAATT+TGG + chr8_3:24345932-24345951 Msa1283110:intron 15.0%
!!! ATATATTTTTTTTTGGGTTT+AGG + chr8_3:24345998-24346017 Msa1283110:intron 15.0%
!! AATATAGGAATAAATTATGA+TGG - chr8_3:24348138-24348157 None:intergenic 15.0%
!! GAATTAATAAGCAAATATAT+CGG - chr8_3:24348834-24348853 None:intergenic 15.0%
!!! TTGAAATATTGATAATATGA+GGG - chr8_3:24349873-24349892 None:intergenic 15.0%
!!! TTTGAAATATTGATAATATG+AGG - chr8_3:24349874-24349893 None:intergenic 15.0%
!!! TGATATTAATTTGATAACAT+GGG - chr8_3:24349998-24350017 None:intergenic 15.0%
!!! ATGATATTAATTTGATAACA+TGG - chr8_3:24349999-24350018 None:intergenic 15.0%
!! TAAATTACAAATGATATTCT+AGG - chr8_3:24350615-24350634 None:intergenic 15.0%
!!! AACATTGTTTGTTTTGTTTT+TGG + chr8_3:24345246-24345265 Msa1283110:five_prime_UTR 20.0%
!!! TTGTTTTTCTGATTATGTAT+GGG + chr8_3:24345619-24345638 Msa1283110:intron 20.0%
!! CACAACAAAATTACATAAAA+AGG - chr8_3:24345806-24345825 None:intergenic 20.0%
!!! TTTATGATAATTTGGTTTCT+CGG + chr8_3:24345940-24345959 Msa1283110:intron 20.0%
!! ACTCAATAAGTATATAATGA+TGG - chr8_3:24346677-24346696 None:intergenic 20.0%
!! CTGAAAAATAAATTCATAGA+AGG - chr8_3:24347036-24347055 None:intergenic 20.0%
!! TGACTTTAACTATTTGAATA+AGG + chr8_3:24347067-24347086 Msa1283110:intron 20.0%
!! GGTACTATAATTTATCATAA+CGG - chr8_3:24347158-24347177 None:intergenic 20.0%
!! TATGATAAATTATAGTACCA+TGG + chr8_3:24347159-24347178 Msa1283110:five_prime_UTR 20.0%
!!! TTTATGTTAAAGCATTATTG+CGG + chr8_3:24347703-24347722 Msa1283110:intron 20.0%
!! TACATTTGCAGTATTAAATA+CGG - chr8_3:24347919-24347938 None:intergenic 20.0%
!! TTTAATCAACATAGCTTAAA+AGG - chr8_3:24347958-24347977 None:intergenic 20.0%
!!! TTTCTAGTTTGTATCTATTT+TGG - chr8_3:24348020-24348039 None:intergenic 20.0%
!! ACTATTACATCACATTTAAA+TGG - chr8_3:24348112-24348131 None:intergenic 20.0%
!! TGATATATATTTATACAGGT+GGG + chr8_3:24348197-24348216 Msa1283110:intron 20.0%
!!! TTTCAAATGTTACTGTTTTT+TGG + chr8_3:24348653-24348672 Msa1283110:intron 20.0%
!!! TTACTATTGCCATTTTTTAT+TGG + chr8_3:24349121-24349140 Msa1283110:intron 20.0%
!!! GATATTAATTTGATAACATG+GGG - chr8_3:24349997-24350016 None:intergenic 20.0%
!! TATAATTTCAATGACCAAAT+TGG + chr8_3:24350124-24350143 Msa1283110:intron 20.0%
!! AATAATAATATTAGTGGCAT+TGG - chr8_3:24350213-24350232 None:intergenic 20.0%
!! CAGAAGAATAATAATATTAG+TGG - chr8_3:24350219-24350238 None:intergenic 20.0%
!!! TCTTTTATATAAAATCATGG+TGG - chr8_3:24350587-24350606 None:intergenic 20.0%
!!! GCATCTTTTATATAAAATCA+TGG - chr8_3:24350590-24350609 None:intergenic 20.0%
!! AGAAAATTACAATCTTAAGA+CGG + chr8_3:24350674-24350693 Msa1283110:three_prime_UTR 20.0%
! CAGAAATTAGAATTCTTCTT+TGG - chr8_3:24345321-24345340 None:intergenic 25.0%
! CAAAGAAGAATTCTAATTTC+TGG + chr8_3:24345319-24345338 Msa1283110:five_prime_UTR 25.0%
!!! AAATGTGTGATTTTTAGATG+TGG + chr8_3:24345444-24345463 Msa1283110:intron 25.0%
!!! AATGTGTGATTTTTAGATGT+GGG + chr8_3:24345445-24345464 Msa1283110:intron 25.0%
!!! GTTGTTTTTCTGATTATGTA+TGG + chr8_3:24345618-24345637 Msa1283110:intron 25.0%
! AAGGAAGATATGATTTAGTA+AGG + chr8_3:24345663-24345682 Msa1283110:five_prime_UTR 25.0%
! TATTAAGACAATGCAAAAAG+TGG + chr8_3:24345688-24345707 Msa1283110:five_prime_UTR 25.0%
! ATTAAGACAATGCAAAAAGT+GGG + chr8_3:24345689-24345708 Msa1283110:five_prime_UTR 25.0%
! ATTATTCTTTAATGGTGTAG+AGG + chr8_3:24345835-24345854 Msa1283110:intron 25.0%
! AAGAAAAATTCAACCTTGAA+AGG - chr8_3:24345916-24345935 None:intergenic 25.0%
! ATCTTGAAGTAGTAATTTGA+TGG - chr8_3:24346208-24346227 None:intergenic 25.0%
! TTACATGAATTAATCTGTAG+TGG - chr8_3:24346724-24346743 None:intergenic 25.0%
! CTACAGATTAATTCATGTAA+TGG + chr8_3:24346724-24346743 Msa1283110:intron 25.0%
!! ATCATAAGGTTTACAGATTT+TGG + chr8_3:24346908-24346927 Msa1283110:intron 25.0%
!!! TAATTTATCATAACGGACAA+AGG - chr8_3:24347151-24347170 None:intergenic 25.0%
! TTCTTACCATATTCATCAAT+TGG - chr8_3:24347249-24347268 None:intergenic 25.0%
!! TCCTTCAAATGACTATATTT+TGG - chr8_3:24347549-24347568 None:intergenic 25.0%
!! CAAATGTAAGAATATTTTGC+AGG + chr8_3:24347931-24347950 Msa1283110:intron 25.0%
! CAAATAATTGATTGATGCAA+AGG - chr8_3:24348170-24348189 None:intergenic 25.0%
! GGACTGATATATATTTATAC+AGG + chr8_3:24348193-24348212 Msa1283110:intron 25.0%
! CTGATATATATTTATACAGG+TGG + chr8_3:24348196-24348215 Msa1283110:intron 25.0%
!! AGTTTTCGTAATTCATTTGA+TGG - chr8_3:24348439-24348458 None:intergenic 25.0%
! TATCAAAGCAATAATTTCCT+AGG + chr8_3:24348478-24348497 Msa1283110:intron 25.0%
! AATCTGAAAGATGCTTAAAA+TGG - chr8_3:24348583-24348602 None:intergenic 25.0%
!!! AAATGTTACTGTTTTTTGGT+TGG + chr8_3:24348657-24348676 Msa1283110:intron 25.0%
! ATTAATTCTGAGTTAACTGA+AGG + chr8_3:24348846-24348865 Msa1283110:intron 25.0%
!!! TTCAAGTTGGATTTAGAATA+TGG - chr8_3:24349015-24349034 None:intergenic 25.0%
! AACGTTCTTCCAATAAAAAA+TGG - chr8_3:24349133-24349152 None:intergenic 25.0%
!!! ATTTTTTATTGGAAGAACGT+TGG + chr8_3:24349132-24349151 Msa1283110:intron 25.0%
! TTTGTTTGTTTAGGAAAATG+TGG + chr8_3:24349797-24349816 Msa1283110:intron 25.0%
! TAAAGTTGAAAAGGTTAATC+AGG - chr8_3:24350055-24350074 None:intergenic 25.0%
!! TGATTAACCTTTTCAACTTT+AGG + chr8_3:24350054-24350073 Msa1283110:intron 25.0%
! AATGATTCCTAAAGTTGAAA+AGG - chr8_3:24350064-24350083 None:intergenic 25.0%
!!! ATGATAATGACACGTTATTT+TGG + chr8_3:24350171-24350190 Msa1283110:intron 25.0%
!!! TGATAATGACACGTTATTTT+GGG + chr8_3:24350172-24350191 Msa1283110:intron 25.0%
! ATTATTCTTCTGTATACAAG+AGG + chr8_3:24350227-24350246 Msa1283110:intron 25.0%
! TTATATAACTTATTGCACCA+AGG - chr8_3:24350493-24350512 None:intergenic 25.0%
! TATATAAAATCATGGTGGTT+TGG - chr8_3:24350582-24350601 None:intergenic 25.0%
AAGAAGAAGAAGAAGAAGAA+TGG - chr8_3:24345176-24345195 None:intergenic 30.0%
CAATGTTGTTACTACTACTA+GGG - chr8_3:24345233-24345252 None:intergenic 30.0%
ACAATGTTGTTACTACTACT+AGG - chr8_3:24345234-24345253 None:intergenic 30.0%
CTAATTAAGAAAGCCAAACA+TGG + chr8_3:24345473-24345492 Msa1283110:five_prime_UTR 30.0%
TTATAGACACTTATGTCTTC+TGG + chr8_3:24345507-24345526 Msa1283110:five_prime_UTR 30.0%
TATAGACACTTATGTCTTCT+GGG + chr8_3:24345508-24345527 Msa1283110:five_prime_UTR 30.0%
AAGGGCTTCATGAAAATTAA+GGG - chr8_3:24345566-24345585 None:intergenic 30.0%
AAAGGGCTTCATGAAAATTA+AGG - chr8_3:24345567-24345586 None:intergenic 30.0%
TTAAGACAATGCAAAAAGTG+GGG + chr8_3:24345690-24345709 Msa1283110:five_prime_UTR 30.0%
CTTATGTTTCATCTACTTCT+AGG - chr8_3:24346167-24346186 None:intergenic 30.0%
TTCTAGATTGAGAACGAATA+TGG + chr8_3:24346410-24346429 Msa1283110:intron 30.0%
GAGTCTCAAGTTCTATATTT+AGG + chr8_3:24346647-24346666 Msa1283110:intron 30.0%
! ATTAATCTGTAGTGGAGAAT+TGG - chr8_3:24346716-24346735 None:intergenic 30.0%
CTAGGCTTATATGGTTTATT+TGG - chr8_3:24346772-24346791 None:intergenic 30.0%
! GAGAGATCAGAAGTATAAAA+GGG - chr8_3:24346871-24346890 None:intergenic 30.0%
! AGAGAGATCAGAAGTATAAA+AGG - chr8_3:24346872-24346891 None:intergenic 30.0%
TTCTATTCTCCATGATCATA+AGG + chr8_3:24346894-24346913 Msa1283110:intron 30.0%
ATCTGTAAACCTTATGATCA+TGG - chr8_3:24346906-24346925 None:intergenic 30.0%
! ATAAGGTTTACAGATTTTGG+TGG + chr8_3:24346911-24346930 Msa1283110:intron 30.0%
CTCATATGTGAATTACTACA+TGG + chr8_3:24347000-24347019 Msa1283110:five_prime_UTR 30.0%
TATGTGAATTACTACATGGT+TGG + chr8_3:24347004-24347023 Msa1283110:intron 30.0%
! TTTTGTTGCAAGAAAACATG+TGG + chr8_3:24347099-24347118 Msa1283110:intron 30.0%
GATAAATTATAGTACCATGG+AGG + chr8_3:24347162-24347181 Msa1283110:five_prime_UTR 30.0%
! TCATAGCTTGTAGTAATGAA+TGG - chr8_3:24347216-24347235 None:intergenic 30.0%
TGATTCACTGAGAATTTGAA+TGG + chr8_3:24347315-24347334 Msa1283110:intron 30.0%
!!! ATTTTCTTTAAGACCACTCA+GGG - chr8_3:24347443-24347462 None:intergenic 30.0%
!!! AATTTTCTTTAAGACCACTC+AGG - chr8_3:24347444-24347463 None:intergenic 30.0%
! TAAAAGCTCTCTTTTTGTTC+AGG - chr8_3:24347487-24347506 None:intergenic 30.0%
GCCAAAATATAGTCATTTGA+AGG + chr8_3:24347545-24347564 Msa1283110:five_prime_UTR 30.0%
ACAAGCAAAGAACTAGAAAA+GGG - chr8_3:24347684-24347703 None:intergenic 30.0%
AACAAGCAAAGAACTAGAAA+AGG - chr8_3:24347685-24347704 None:intergenic 30.0%
TCTAGCAAACTATCATCTAA+AGG + chr8_3:24347812-24347831 Msa1283110:five_prime_UTR 30.0%
! CTACTGTGGTTTTCAATAAT+AGG + chr8_3:24347841-24347860 Msa1283110:five_prime_UTR 30.0%
GCATCAATCAATTATTTGAC+TGG + chr8_3:24348172-24348191 Msa1283110:intron 30.0%
AGAAGATAGATCTTCATCAT+AGG - chr8_3:24348279-24348298 None:intergenic 30.0%
ATTATATCACTCATCTTACC+TGG - chr8_3:24348390-24348409 None:intergenic 30.0%
CAAATTTCTTCTGCTTGAAT+TGG - chr8_3:24348526-24348545 None:intergenic 30.0%
!! AGGTGACTGATTTCTTTTAA+AGG + chr8_3:24348866-24348885 Msa1283110:intron 30.0%
!! GGTGACTGATTTCTTTTAAA+GGG + chr8_3:24348867-24348886 Msa1283110:intron 30.0%
!! ACTGATTTCTTTTAAAGGGT+CGG + chr8_3:24348871-24348890 Msa1283110:intron 30.0%
AGAGAAGTTGCACATTTAAT+GGG + chr8_3:24348912-24348931 Msa1283110:CDS 30.0%
ATATGGTATTAAGCACTAAC+CGG - chr8_3:24348998-24349017 None:intergenic 30.0%
!! GCATAATAAATGGTCTTATC+AGG + chr8_3:24349236-24349255 Msa1283110:CDS 30.0%
AGTAGAATATGTTGTTGAAC+AGG + chr8_3:24349335-24349354 Msa1283110:intron 30.0%
TTTGTCCATTTATCCATACT+TGG - chr8_3:24349618-24349637 None:intergenic 30.0%
AAATTGTACCATCTTTGAGT+GGG - chr8_3:24349742-24349761 None:intergenic 30.0%
AAAATTGTACCATCTTTGAG+TGG - chr8_3:24349743-24349762 None:intergenic 30.0%
CCTAAACAAACAAAGAAGTA+AGG - chr8_3:24349791-24349810 None:intergenic 30.0%
! CCTTACTTCTTTGTTTGTTT+AGG + chr8_3:24349788-24349807 Msa1283110:intron 30.0%
!! ATATTGATGATGTGGATACT+AGG + chr8_3:24350089-24350108 Msa1283110:intron 30.0%
TATGTCGCAAATATCCAATT+TGG - chr8_3:24350141-24350160 None:intergenic 30.0%
ATGTTTACAAGTGTTCTGTT+TGG + chr8_3:24350270-24350289 Msa1283110:intron 30.0%
ACTACTATTAGGTTCTTTGT+TGG - chr8_3:24350337-24350356 None:intergenic 30.0%
GTTCTTCAAACACTACTATT+AGG - chr8_3:24350348-24350367 None:intergenic 30.0%
ATAGTAGTGTTTGAAGAACT+TGG + chr8_3:24350349-24350368 Msa1283110:CDS 30.0%
GAATCCTTGGAAAATTTCTT+TGG + chr8_3:24350375-24350394 Msa1283110:CDS 30.0%
! TTCACCAAAGAAATTTTCCA+AGG - chr8_3:24350382-24350401 None:intergenic 30.0%
TTTGTATGTAGCTTCACTTA+GGG + chr8_3:24350524-24350543 Msa1283110:three_prime_UTR 30.0%
!! GTCATTTTATTGTATCTAGC+TGG + chr8_3:24350648-24350667 Msa1283110:three_prime_UTR 30.0%
!! TCTTCTTCTTCTTTGAGACA+TGG + chr8_3:24345183-24345202 Msa1283110:five_prime_UTR 35.0%
AGAAAGTCTCTTCTCATCAA+TGG + chr8_3:24345295-24345314 Msa1283110:five_prime_UTR 35.0%
CAATTGCAAACATACTTCAG+GGG - chr8_3:24345368-24345387 None:intergenic 35.0%
GCAATTGCAAACATACTTCA+GGG - chr8_3:24345369-24345388 None:intergenic 35.0%
TGCAATTGCAAACATACTTC+AGG - chr8_3:24345370-24345389 None:intergenic 35.0%
ATTAAGAAAGCCAAACATGG+TGG + chr8_3:24345476-24345495 Msa1283110:five_prime_UTR 35.0%
!! ATTAAGGGTATTACATTGCC+AGG - chr8_3:24345551-24345570 None:intergenic 35.0%
! GCATTGCAGTACAATTTTGA+AGG + chr8_3:24345644-24345663 Msa1283110:intron 35.0%
ATAAGCTTCAGAACGGATAA+CGG + chr8_3:24345889-24345908 Msa1283110:five_prime_UTR 35.0%
!! ATTTGGTTTCTCGGTTTTGA+CGG + chr8_3:24345949-24345968 Msa1283110:intron 35.0%
! GCTTTTCACTCTTCATCATT+TGG - chr8_3:24346055-24346074 None:intergenic 35.0%
CATACCTGAGAGAGAATTAT+TGG - chr8_3:24346098-24346117 None:intergenic 35.0%
TTGAATGTGTGCGTAATTGA+AGG + chr8_3:24346128-24346147 Msa1283110:intron 35.0%
GATGCTCCAATTGATGAATA+TGG + chr8_3:24347240-24347259 Msa1283110:five_prime_UTR 35.0%
AATATCGAAGAATCTGCTTC+TGG - chr8_3:24347283-24347302 None:intergenic 35.0%
CAAGAATCAACTCAACTTGA+GGG - chr8_3:24347408-24347427 None:intergenic 35.0%
!!! TTTTCTTTAAGACCACTCAG+GGG - chr8_3:24347442-24347461 None:intergenic 35.0%
TTGAGCACTTCACTATGTTT+AGG + chr8_3:24347510-24347529 Msa1283110:intron 35.0%
! CACTTCACTATGTTTAGGTT+TGG + chr8_3:24347515-24347534 Msa1283110:intron 35.0%
AAGCACATACAGAGAGAATA+AGG - chr8_3:24347738-24347757 None:intergenic 35.0%
TTATTCTCTCTGTATGTGCT+TGG + chr8_3:24347737-24347756 Msa1283110:intron 35.0%
AATACGGAAGTTATGCAATC+AGG - chr8_3:24347903-24347922 None:intergenic 35.0%
CAAAGGACAAGGCTTAATAT+AGG - chr8_3:24348153-24348172 None:intergenic 35.0%
ATTGATTGATGCAAAGGACA+AGG - chr8_3:24348164-24348183 None:intergenic 35.0%
ACTATCTATGGTACATAACC+AGG + chr8_3:24348369-24348388 Msa1283110:CDS 35.0%
!! ACGAAAACTTTTTGAGCTGT+TGG + chr8_3:24348450-24348469 Msa1283110:intron 35.0%
CAAAGCAATAATTTCCTAGG+CGG + chr8_3:24348481-24348500 Msa1283110:intron 35.0%
GGTCAAGTACAGGAATTTAT+TGG - chr8_3:24348562-24348581 None:intergenic 35.0%
TGCTTAAAATGGTCAAGTAC+AGG - chr8_3:24348572-24348591 None:intergenic 35.0%
TGAAATGTTGAGAACTGAGA+AGG - chr8_3:24348638-24348657 None:intergenic 35.0%
TCATCAGAATCATTTCTTCG+AGG + chr8_3:24348703-24348722 Msa1283110:CDS 35.0%
!! TTTGCTAACGGGCAATTTTT+AGG + chr8_3:24348778-24348797 Msa1283110:CDS 35.0%
CAGAGAAGTTGCACATTTAA+TGG + chr8_3:24348911-24348930 Msa1283110:CDS 35.0%
AATTCAATCAGTGACAAGCA+AGG - chr8_3:24349089-24349108 None:intergenic 35.0%
TCTCCCATGTTTCATAATGT+CGG - chr8_3:24349158-24349177 None:intergenic 35.0%
ACATTATGAAACATGGGAGA+CGG + chr8_3:24349158-24349177 Msa1283110:CDS 35.0%
TTATTATGCGACAGATCCTT+CGG - chr8_3:24349225-24349244 None:intergenic 35.0%
AGGATCTGTCGCATAATAAA+TGG + chr8_3:24349226-24349245 Msa1283110:CDS 35.0%
GAATATGTTGTTGAACAGGT+TGG + chr8_3:24349339-24349358 Msa1283110:intron 35.0%
TGAATTTGGTATCACCCAAT+GGG + chr8_3:24349379-24349398 Msa1283110:CDS 35.0%
!!! TGTACCATTTTAGTTGTGAC+CGG - chr8_3:24349449-24349468 None:intergenic 35.0%
GTCACAACTAAAATGGTACA+AGG + chr8_3:24349449-24349468 Msa1283110:CDS 35.0%
TGGATAAATGGACAAAGCAT+AGG + chr8_3:24349622-24349641 Msa1283110:CDS 35.0%
GACAAAGCATAGGAAGATAT+TGG + chr8_3:24349632-24349651 Msa1283110:CDS 35.0%
AAGCATAGGAAGATATTGGA+TGG + chr8_3:24349636-24349655 Msa1283110:CDS 35.0%
ATATTGGATGGCTTATGCAA+AGG + chr8_3:24349648-24349667 Msa1283110:CDS 35.0%
TATTGGATGGCTTATGCAAA+GGG + chr8_3:24349649-24349668 Msa1283110:CDS 35.0%
TGTGGAGTAAATACTCAAGT+TGG + chr8_3:24349815-24349834 Msa1283110:intron 35.0%
GATAATATGAGGGACTAGAT+TGG - chr8_3:24349863-24349882 None:intergenic 35.0%
TGATAACAGGTCAAAACAGA+GGG - chr8_3:24349934-24349953 None:intergenic 35.0%
! TTGATAACAGGTCAAAACAG+AGG - chr8_3:24349935-24349954 None:intergenic 35.0%
! TCAGAGATGCATTTGATAAC+AGG - chr8_3:24349947-24349966 None:intergenic 35.0%
! AATATTAGTGGCATTGGATC+TGG - chr8_3:24350207-24350226 None:intergenic 35.0%
GTTTGTATGTAGCTTCACTT+AGG + chr8_3:24350523-24350542 Msa1283110:three_prime_UTR 35.0%
TTGTATGTAGCTTCACTTAG+GGG + chr8_3:24350525-24350544 Msa1283110:three_prime_UTR 35.0%
GTTCATGTGTGGTGTGAAAA+TGG + chr8_3:24345092-24345111 Msa1283110:five_prime_UTR 40.0%
AACATCAAGACCACCATGTT+TGG - chr8_3:24345489-24345508 None:intergenic 40.0%
CGCATATATAAGGTCCAATG+CGG - chr8_3:24345730-24345749 None:intergenic 40.0%
TTCCACTCAGCGCATATATA+AGG - chr8_3:24345740-24345759 None:intergenic 40.0%
!! ATCCGTTCTGAAGCTTATTC+CGG - chr8_3:24345887-24345906 None:intergenic 40.0%
! TGAAAAGCTGTTTCAGTCTC+AGG + chr8_3:24346067-24346086 Msa1283110:five_prime_UTR 40.0%
! GAAAAGCTGTTTCAGTCTCA+GGG + chr8_3:24346068-24346087 Msa1283110:five_prime_UTR 40.0%
TGGTCCAATAATTCTCTCTC+AGG + chr8_3:24346091-24346110 Msa1283110:five_prime_UTR 40.0%
CGCACACATTCAAAAGAGAA+AGG - chr8_3:24346121-24346140 None:intergenic 40.0%
ACTGTAGCAAAGGTAAGAGA+GGG - chr8_3:24346306-24346325 None:intergenic 40.0%
ATGTACGTAGACTGTAGCAA+AGG - chr8_3:24346316-24346335 None:intergenic 40.0%
TGGTCATGCATACCTAAACT+GGG + chr8_3:24346460-24346479 Msa1283110:five_prime_UTR 40.0%
TGCAAATATGGCTGTTGGAT+TGG + chr8_3:24346484-24346503 Msa1283110:five_prime_UTR 40.0%
GCAAATATGGCTGTTGGATT+GGG + chr8_3:24346485-24346504 Msa1283110:five_prime_UTR 40.0%
! ATCTGTAGTGGAGAATTGGA+TGG - chr8_3:24346712-24346731 None:intergenic 40.0%
AACCATATAAGCCTAGCATG+TGG + chr8_3:24346776-24346795 Msa1283110:five_prime_UTR 40.0%
ATATAAGCCTAGCATGTGGA+CGG + chr8_3:24346780-24346799 Msa1283110:five_prime_UTR 40.0%
AGTTGCTCGTTTCATTCAGA+AGG + chr8_3:24346973-24346992 Msa1283110:five_prime_UTR 40.0%
GTTGCTCGTTTCATTCAGAA+GGG + chr8_3:24346974-24346993 Msa1283110:five_prime_UTR 40.0%
GTGAATTACTACATGGTTGG+TGG + chr8_3:24347007-24347026 Msa1283110:intron 40.0%
ACGGACAAAGGTGAAACTTA+AGG - chr8_3:24347139-24347158 None:intergenic 40.0%
CCAAGAATCAACTCAACTTG+AGG - chr8_3:24347409-24347428 None:intergenic 40.0%
!! CCTCAAGTTGAGTTGATTCT+TGG + chr8_3:24347406-24347425 Msa1283110:intron 40.0%
! AGCTCTCTTTTTGTTCAGGA+TGG - chr8_3:24347483-24347502 None:intergenic 40.0%
! CACTATGTTTAGGTTTGGTC+AGG + chr8_3:24347520-24347539 Msa1283110:intron 40.0%
! TGAGCATGCTTTGGTTTCTT+CGG + chr8_3:24347593-24347612 Msa1283110:five_prime_UTR 40.0%
GATCCTACTGTTACACCATT+AGG + chr8_3:24347615-24347634 Msa1283110:five_prime_UTR 40.0%
GTTCCTAATGGTGTAACAGT+AGG - chr8_3:24347621-24347640 None:intergenic 40.0%
!! TATGTGCTTGGTGATTTTCC+AGG + chr8_3:24347749-24347768 Msa1283110:intron 40.0%
GCAATCAGGAAGGATACTTA+TGG - chr8_3:24347889-24347908 None:intergenic 40.0%
!! AAATGAGTCCTGTCGATTCT+AGG + chr8_3:24348240-24348259 Msa1283110:exon 40.0%
!! TGTCGATTCTAGGTTCTCAT+GGG + chr8_3:24348250-24348269 Msa1283110:CDS 40.0%
CTTCTCTAGACGAAAGTTCA+AGG + chr8_3:24348294-24348313 Msa1283110:CDS 40.0%
TGGTGTCTCTTGTAACATTG+AGG - chr8_3:24348346-24348365 None:intergenic 40.0%
TATGTACCATAGATAGTCGC+TGG - chr8_3:24348366-24348385 None:intergenic 40.0%
TATCTCCTAGATCTTCAGTC+AGG + chr8_3:24348413-24348432 Msa1283110:intron 40.0%
ATGTTGAGAACTGAGAAGGT+AGG - chr8_3:24348634-24348653 None:intergenic 40.0%
TCAGAATCATTTCTTCGAGG+AGG + chr8_3:24348706-24348725 Msa1283110:CDS 40.0%
GCAGACTGCACATTAATGTT+GGG - chr8_3:24348739-24348758 None:intergenic 40.0%
TGCAGACTGCACATTAATGT+TGG - chr8_3:24348740-24348759 None:intergenic 40.0%
AACATTAATGTGCAGTCTGC+AGG + chr8_3:24348739-24348758 Msa1283110:CDS 40.0%
!! TCTTTTAAAGGGTCGGCATT+TGG + chr8_3:24348878-24348897 Msa1283110:intron 40.0%
!! CTTTTAAAGGGTCGGCATTT+GGG + chr8_3:24348879-24348898 Msa1283110:intron 40.0%
CTGAATGCTCAAGTTCAAGT+TGG - chr8_3:24349028-24349047 None:intergenic 40.0%
TTGGCCGACATTATGAAACA+TGG + chr8_3:24349151-24349170 Msa1283110:CDS 40.0%
TGGCCGACATTATGAAACAT+GGG + chr8_3:24349152-24349171 Msa1283110:CDS 40.0%
CATTATGAAACATGGGAGAC+GGG + chr8_3:24349159-24349178 Msa1283110:CDS 40.0%
ATTATGAAACATGGGAGACG+GGG + chr8_3:24349160-24349179 Msa1283110:CDS 40.0%
! GTTGAACAGGTTGGACTAAA+AGG + chr8_3:24349348-24349367 Msa1283110:intron 40.0%
AAAAGGAGAGGCTGTGAATT+TGG + chr8_3:24349365-24349384 Msa1283110:CDS 40.0%
GTGAATTTGGTATCACCCAA+TGG + chr8_3:24349378-24349397 Msa1283110:CDS 40.0%
GAATTTGGTATCACCCAATG+GGG + chr8_3:24349380-24349399 Msa1283110:CDS 40.0%
CAAGGTAAGAGCAGTTTACT+AGG + chr8_3:24349467-24349486 Msa1283110:intron 40.0%
! GAGGTTTGAAGTTTGTGGTA+AGG - chr8_3:24349527-24349546 None:intergenic 40.0%
!!! GCTTATTTTAACACGCCTGA+GGG + chr8_3:24349550-24349569 Msa1283110:CDS 40.0%
AAGGGCCAAGTATGGATAAA+TGG + chr8_3:24349610-24349629 Msa1283110:CDS 40.0%
TGCAATTCCTGCAACTATTC+TGG + chr8_3:24349676-24349695 Msa1283110:CDS 40.0%
GCAATTCCTGCAACTATTCT+GGG + chr8_3:24349677-24349696 Msa1283110:CDS 40.0%
!! ACTCAAGTTGGTCCTTGAAA+TGG + chr8_3:24349827-24349846 Msa1283110:intron 40.0%
! AAGTTGGTCCTTGAAATGGT+AGG + chr8_3:24349831-24349850 Msa1283110:intron 40.0%
GGTACTTTCCTACCATTTCA+AGG - chr8_3:24349842-24349861 None:intergenic 40.0%
TCCTTGCAAGTATCAACAGA+GGG + chr8_3:24350024-24350043 Msa1283110:intron 40.0%
GTAGTGTTTGAAGAACTTGG+CGG + chr8_3:24350352-24350371 Msa1283110:CDS 40.0%
TAGTGTTTGAAGAACTTGGC+GGG + chr8_3:24350353-24350372 Msa1283110:CDS 40.0%
GGTGCTTCTTGGATAGTGAA+TGG - chr8_3:24345347-24345366 None:intergenic 45.0%
GATGTTCATGAACCATCTCC+TGG + chr8_3:24345530-24345549 Msa1283110:five_prime_UTR 45.0%
GGTATTACATTGCCAGGAGA+TGG - chr8_3:24345545-24345564 None:intergenic 45.0%
CTTTATGCCAATCTCCGCAT+TGG + chr8_3:24345713-24345732 Msa1283110:five_prime_UTR 45.0%
ATAAGGTCCAATGCGGAGAT+TGG - chr8_3:24345723-24345742 None:intergenic 45.0%
GACCTTATATATGCGCTGAG+TGG + chr8_3:24345735-24345754 Msa1283110:five_prime_UTR 45.0%
ATATGCGCTGAGTGGAACTT+TGG + chr8_3:24345743-24345762 Msa1283110:five_prime_UTR 45.0%
TATGCGCTGAGTGGAACTTT+GGG + chr8_3:24345744-24345763 Msa1283110:five_prime_UTR 45.0%
GGTGTAGAGGAATTCCTGTT+TGG + chr8_3:24345848-24345867 Msa1283110:intron 45.0%
GGCACATACTTCAACCAAAC+AGG - chr8_3:24345865-24345884 None:intergenic 45.0%
GTTTGGTTGAAGTATGTGCC+CGG + chr8_3:24345865-24345884 Msa1283110:five_prime_UTR 45.0%
!! TCCGTTCTGAAGCTTATTCC+GGG - chr8_3:24345886-24345905 None:intergenic 45.0%
!! AACGGATAACGGACCTTTCA+AGG + chr8_3:24345900-24345919 Msa1283110:five_prime_UTR 45.0%
GACTGTAGCAAAGGTAAGAG+AGG - chr8_3:24346307-24346326 None:intergenic 45.0%
AACGAATATGGACCAGAGAG+CGG + chr8_3:24346422-24346441 Msa1283110:five_prime_UTR 45.0%
CTGGTCATGCATACCTAAAC+TGG + chr8_3:24346459-24346478 Msa1283110:five_prime_UTR 45.0%
CCATATTTGCAGCCCAGTTT+AGG - chr8_3:24346475-24346494 None:intergenic 45.0%
CCTAAACTGGGCTGCAAATA+TGG + chr8_3:24346472-24346491 Msa1283110:five_prime_UTR 45.0%
TTTCCTTGCACATCACCCAA+GGG - chr8_3:24346520-24346539 None:intergenic 45.0%
! TTTTCCTTGCACATCACCCA+AGG - chr8_3:24346521-24346540 None:intergenic 45.0%
AGAATGAAAGAGCTCACCAC+AGG - chr8_3:24346557-24346576 None:intergenic 45.0%
GGTGAGCTCTTTCATTCTCT+TGG + chr8_3:24346559-24346578 Msa1283110:intron 45.0%
AGTGTGACAGCTGAAGCAAA+CGG - chr8_3:24346590-24346609 None:intergenic 45.0%
TGCTTCAGCTGTCACACTTA+AGG + chr8_3:24346592-24346611 Msa1283110:intron 45.0%
GCTTCAGCTGTCACACTTAA+GGG + chr8_3:24346593-24346612 Msa1283110:intron 45.0%
CTTCAGCTGTCACACTTAAG+GGG + chr8_3:24346594-24346613 Msa1283110:intron 45.0%
TTCAGCTGTCACACTTAAGG+GGG + chr8_3:24346595-24346614 Msa1283110:intron 45.0%
GTCCACATGCTAGGCTTATA+TGG - chr8_3:24346781-24346800 None:intergenic 45.0%
GCAAATGCTAGATCCTGAAC+TGG - chr8_3:24346953-24346972 None:intergenic 45.0%
TACCATGGAGGAACCAACTT+TGG + chr8_3:24347174-24347193 Msa1283110:five_prime_UTR 45.0%
ACCATTAGGAACACTTCAGC+AGG + chr8_3:24347629-24347648 Msa1283110:five_prime_UTR 45.0%
! ACCTGCTGAAGTGTTCCTAA+TGG - chr8_3:24347633-24347652 None:intergenic 45.0%
GTATTCTCTGCAGGAACTAC+AGG + chr8_3:24347777-24347796 Msa1283110:five_prime_UTR 45.0%
AGGATACTTATGGACCATGG+AGG - chr8_3:24347879-24347898 None:intergenic 45.0%
GGAAGGATACTTATGGACCA+TGG - chr8_3:24347882-24347901 None:intergenic 45.0%
CGGAAGTTATGCAATCAGGA+AGG - chr8_3:24347899-24347918 None:intergenic 45.0%
CATGAGAACCTAGAATCGAC+AGG - chr8_3:24348251-24348270 None:intergenic 45.0%
!! CTGTCGATTCTAGGTTCTCA+TGG + chr8_3:24348249-24348268 Msa1283110:CDS 45.0%
AGTTCAAGGATTACAGCTGC+TGG + chr8_3:24348308-24348327 Msa1283110:CDS 45.0%
TGATACAATAGACACCGCCT+AGG - chr8_3:24348498-24348517 None:intergenic 45.0%
ATTGCCCGTTAGCAAACACA+TGG - chr8_3:24348774-24348793 None:intergenic 45.0%
GCTCCAGCATGTAGATTAAC+TGG - chr8_3:24348938-24348957 None:intergenic 45.0%
! CAAGGTGTCTGACAAGCAAA+TGG - chr8_3:24349071-24349090 None:intergenic 45.0%
! ACAGGTTGGACTAAAAGGAG+AGG + chr8_3:24349353-24349372 Msa1283110:intron 45.0%
TCATTAGCTGAGACCCCATT+GGG - chr8_3:24349396-24349415 None:intergenic 45.0%
ATCATTAGCTGAGACCCCAT+TGG - chr8_3:24349397-24349416 None:intergenic 45.0%
ATGGGGTCTCAGCTAATGAT+TGG + chr8_3:24349397-24349416 Msa1283110:CDS 45.0%
TGGGGTCTCAGCTAATGATT+GGG + chr8_3:24349398-24349417 Msa1283110:CDS 45.0%
ATTCACTAGCTACTCCAAGC+CGG + chr8_3:24349427-24349446 Msa1283110:CDS 45.0%
!!! CATTTTAGTTGTGACCGGCT+TGG - chr8_3:24349444-24349463 None:intergenic 45.0%
CAAGCCGGTCACAACTAAAA+TGG + chr8_3:24349442-24349461 Msa1283110:CDS 45.0%
ACCACAAACTTCAAACCTCC+AGG + chr8_3:24349528-24349547 Msa1283110:intron 45.0%
GCGTGTTAAAATAAGCCTGG+AGG - chr8_3:24349546-24349565 None:intergenic 45.0%
CAGGCGTGTTAAAATAAGCC+TGG - chr8_3:24349549-24349568 None:intergenic 45.0%
!!! GGCTTATTTTAACACGCCTG+AGG + chr8_3:24349549-24349568 Msa1283110:intron 45.0%
! GCTTTGGACCTAGGAAGTAT+GGG + chr8_3:24349586-24349605 Msa1283110:CDS 45.0%
! GACCTAGGAAGTATGGGTAA+GGG + chr8_3:24349592-24349611 Msa1283110:CDS 45.0%
GAATGTCCCAGAATAGTTGC+AGG - chr8_3:24349686-24349705 None:intergenic 45.0%
GTCCTTGCAAGTATCAACAG+AGG + chr8_3:24350023-24350042 Msa1283110:intron 45.0%
TCCCTCTGTTGATACTTGCA+AGG - chr8_3:24350028-24350047 None:intergenic 45.0%
! TCTGTTTGGAATGATGTCGC+AGG + chr8_3:24350284-24350303 Msa1283110:intron 45.0%
GGTATCATGTTCCAAGGTCA+TGG + chr8_3:24350305-24350324 Msa1283110:intron 45.0%
TTGAGTTCACTAACGAGCTG+CGG - chr8_3:24350422-24350441 None:intergenic 45.0%
AAGTTCACTCGCGAATTCTC+TGG + chr8_3:24350446-24350465 Msa1283110:three_prime_UTR 45.0%
!!! AAATACATTTTTTTTTAAAA+GGG - chr8_3:24345584-24345603 None:intergenic 5.0%
!!! AAAATACATTTTTTTTTAAA+AGG - chr8_3:24345585-24345604 None:intergenic 5.0%
!!! GATATATATATATTTTTTTT+TGG + chr8_3:24345991-24346010 Msa1283110:intron 5.0%
!! CATACTTCAGGGGTGCTTCT+TGG - chr8_3:24345358-24345377 None:intergenic 50.0%
GCCCGGAATAAGCTTCAGAA+CGG + chr8_3:24345882-24345901 Msa1283110:five_prime_UTR 50.0%
TGGGTTTAGGCTGCAATGCA+AGG + chr8_3:24346011-24346030 Msa1283110:intron 50.0%
! AAGCTGTTTCAGTCTCAGGG+TGG + chr8_3:24346071-24346090 Msa1283110:five_prime_UTR 50.0%
ACGAATATGGACCAGAGAGC+GGG + chr8_3:24346423-24346442 Msa1283110:five_prime_UTR 50.0%
TGGGCTGCAAATATGGCTGT+TGG + chr8_3:24346479-24346498 Msa1283110:five_prime_UTR 50.0%
! ATGGCTGTTGGATTGGGAAC+AGG + chr8_3:24346491-24346510 Msa1283110:five_prime_UTR 50.0%
ATTGGGAACAGGAGTCCCTT+GGG + chr8_3:24346502-24346521 Msa1283110:five_prime_UTR 50.0%
GTGCAAGGAAAATGATGCCC+CGG + chr8_3:24346529-24346548 Msa1283110:five_prime_UTR 50.0%
AAAGAGCTCACCACAGGATC+CGG - chr8_3:24346551-24346570 None:intergenic 50.0%
GTGTGACAGCTGAAGCAAAC+GGG - chr8_3:24346589-24346608 None:intergenic 50.0%
GAACTGGTCGCTGGTGAATT+GGG - chr8_3:24346937-24346956 None:intergenic 50.0%
TGAACTGGTCGCTGGTGAAT+TGG - chr8_3:24346938-24346957 None:intergenic 50.0%
AATTCACCAGCGACCAGTTC+AGG + chr8_3:24346937-24346956 Msa1283110:five_prime_UTR 50.0%
GCTCGTTTCATTCAGAAGGG+TGG + chr8_3:24346977-24346996 Msa1283110:five_prime_UTR 50.0%
! GTCCAAAGTTGGTTCCTCCA+TGG - chr8_3:24347179-24347198 None:intergenic 50.0%
ACCAACTTTGGACGATCAGC+TGG + chr8_3:24347186-24347205 Msa1283110:five_prime_UTR 50.0%
ACCAGCTGATCGTCCAAAGT+TGG - chr8_3:24347190-24347209 None:intergenic 50.0%
AACTTTGGACGATCAGCTGG+TGG + chr8_3:24347189-24347208 Msa1283110:five_prime_UTR 50.0%
GGATCATTTCAACCCCTGAG+TGG + chr8_3:24347427-24347446 Msa1283110:intron 50.0%
CAAGCGATGTGAGCATGCTT+TGG + chr8_3:24347584-24347603 Msa1283110:five_prime_UTR 50.0%
CTGCAGAGAATACATGAGCC+TGG - chr8_3:24347770-24347789 None:intergenic 50.0%
CAGGCTCATGTATTCTCTGC+AGG + chr8_3:24347768-24347787 Msa1283110:intron 50.0%
TCTAAAGGCTGCTGCTACTG+TGG + chr8_3:24347827-24347846 Msa1283110:five_prime_UTR 50.0%
GAGACACCAGCGACTATCTA+TGG + chr8_3:24348357-24348376 Msa1283110:CDS 50.0%
GATGGCCTGACTGAAGATCT+AGG - chr8_3:24348421-24348440 None:intergenic 50.0%
! GCCGTCCATGTGTTTGCTAA+CGG + chr8_3:24348766-24348785 Msa1283110:CDS 50.0%
CCCGTTAGCAAACACATGGA+CGG - chr8_3:24348770-24348789 None:intergenic 50.0%
! CCGTCCATGTGTTTGCTAAC+GGG + chr8_3:24348767-24348786 Msa1283110:CDS 50.0%
GGGCCAGTTAATCTACATGC+TGG + chr8_3:24348932-24348951 Msa1283110:CDS 50.0%
TCAAGACCATGGAGCACAAC+TGG - chr8_3:24349195-24349214 None:intergenic 50.0%
! GCCTGGAGGTTTGAAGTTTG+TGG - chr8_3:24349532-24349551 None:intergenic 50.0%
!! GAACCATTGGCTTTGGACCT+AGG + chr8_3:24349577-24349596 Msa1283110:CDS 50.0%
CTTCCTAGGTCCAAAGCCAA+TGG - chr8_3:24349583-24349602 None:intergenic 50.0%
!! GGCTTTGGACCTAGGAAGTA+TGG + chr8_3:24349585-24349604 Msa1283110:CDS 50.0%
! GGACCTAGGAAGTATGGGTA+AGG + chr8_3:24349591-24349610 Msa1283110:CDS 50.0%
GTATGGGTAAGGGCCAAGTA+TGG + chr8_3:24349602-24349621 Msa1283110:CDS 50.0%
! AGACCTGCAAAGTGCCAACT+TGG + chr8_3:24349706-24349725 Msa1283110:CDS 50.0%
! CAACCAAGTTGGCACTTTGC+AGG - chr8_3:24349712-24349731 None:intergenic 50.0%
! GCAAAGTGCCAACTTGGTTG+TGG + chr8_3:24349712-24349731 Msa1283110:CDS 50.0%
TGGGTTGTCCACAACCAAGT+TGG - chr8_3:24349723-24349742 None:intergenic 50.0%
GTGGACAACCCACTCAAAGA+TGG + chr8_3:24349731-24349750 Msa1283110:CDS 50.0%
GTCGCAGGTATCATGTTCCA+AGG + chr8_3:24350299-24350318 Msa1283110:intron 50.0%
!! GTTGGCTTTAGCCATGACCT+TGG - chr8_3:24350319-24350338 None:intergenic 50.0%
AAGAACTTGGCGGGAATCCT+TGG + chr8_3:24350362-24350381 Msa1283110:CDS 50.0%
!! TCTGGCTTTGCCTGAAACGA+GGG + chr8_3:24350464-24350483 Msa1283110:three_prime_UTR 50.0%
CGAATATGGACCAGAGAGCG+GGG + chr8_3:24346424-24346443 Msa1283110:five_prime_UTR 55.0%
GATTGGGAACAGGAGTCCCT+TGG + chr8_3:24346501-24346520 Msa1283110:five_prime_UTR 55.0%
AGTCCCTTGGGTGATGTGCA+AGG + chr8_3:24346514-24346533 Msa1283110:five_prime_UTR 55.0%
AAATGATGCCCCGGATCCTG+TGG + chr8_3:24346538-24346557 Msa1283110:five_prime_UTR 55.0%
AAGAGCTCACCACAGGATCC+GGG - chr8_3:24346550-24346569 None:intergenic 55.0%
CAAGACTCCGTCCACATGCT+AGG - chr8_3:24346790-24346809 None:intergenic 55.0%
CTAGCATGTGGACGGAGTCT+TGG + chr8_3:24346788-24346807 Msa1283110:five_prime_UTR 55.0%
ATGTGGACGGAGTCTTGGAG+TGG + chr8_3:24346793-24346812 Msa1283110:five_prime_UTR 55.0%
CTAGATCCTGAACTGGTCGC+TGG - chr8_3:24346946-24346965 None:intergenic 55.0%
! GGCACTATGACTTGCCTCCA+TGG + chr8_3:24347862-24347881 Msa1283110:five_prime_UTR 55.0%
GGTGGGAACTCAAACGTCAG+TGG + chr8_3:24348214-24348233 Msa1283110:intron 55.0%
GCTCTTCTCAGCGTGACTGT+CGG + chr8_3:24348968-24348987 Msa1283110:CDS 55.0%
ACTGGTCCAGTTGTGCTCCA+TGG + chr8_3:24349186-24349205 Msa1283110:CDS 55.0%
! GTGCTCCATGGTCTTGACCA+TGG + chr8_3:24349198-24349217 Msa1283110:CDS 55.0%
TCGGTCCATGGTCAAGACCA+TGG - chr8_3:24349206-24349225 None:intergenic 55.0%
! TGGTCTTGACCATGGACCGA+AGG + chr8_3:24349206-24349225 Msa1283110:CDS 55.0%
!! GGGCAACGAACCATTGGCTT+TGG + chr8_3:24349570-24349589 Msa1283110:CDS 55.0%
GGCCCTTACCCATACTTCCT+AGG - chr8_3:24349597-24349616 None:intergenic 55.0%
!! CTCTGGCTTTGCCTGAAACG+AGG + chr8_3:24350463-24350482 Msa1283110:three_prime_UTR 55.0%
ACCAAGGCTACCCTCGTTTC+AGG - chr8_3:24350477-24350496 None:intergenic 55.0%
AGAGCTCACCACAGGATCCG+GGG - chr8_3:24346549-24346568 None:intergenic 60.0%
! AAGGGTCGGCATTTGGGACG+AGG + chr8_3:24348885-24348904 Msa1283110:intron 60.0%
CAGCGTGACTGTCGGATTGC+CGG + chr8_3:24348976-24348995 Msa1283110:CDS 60.0%
ACATGGGAGACGGGGATCAC+TGG + chr8_3:24349168-24349187 Msa1283110:CDS 60.0%
GCGACAGATCCTTCGGTCCA+TGG - chr8_3:24349218-24349237 None:intergenic 60.0%
GCCTGAGGGCAACGAACCAT+TGG + chr8_3:24349564-24349583 Msa1283110:CDS 60.0%
GCCAATGGTTCGTTGCCCTC+AGG - chr8_3:24349568-24349587 None:intergenic 60.0%
GCCTGAAACGAGGGTAGCCT+TGG + chr8_3:24350473-24350492 Msa1283110:three_prime_UTR 60.0%
TGGACCAGAGAGCGGGGCAA+TGG + chr8_3:24346430-24346449 Msa1283110:five_prime_UTR 65.0%
GGACCAGAGAGCGGGGCAAT+GGG + chr8_3:24346431-24346450 Msa1283110:five_prime_UTR 65.0%
GGACGGAGTCTTGGAGTGGC+TGG + chr8_3:24346797-24346816 Msa1283110:five_prime_UTR 65.0%
GCTCCCATTGCCCCGCTCTC+TGG - chr8_3:24346437-24346456 None:intergenic 70.0%
AGCGGGGCAATGGGAGCTGC+TGG + chr8_3:24346440-24346459 Msa1283110:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 24345087 24350697 24345087 ID=Msa1283110;Name=Msa1283110
chr8_3 mRNA 24345087 24350697 24345087 ID=Msa1283110-mRNA-1;Parent=Msa1283110;Name=Msa1283110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1456|1|1|1|0.94|0.94|18|265|307
chr8_3 exon 24345087 24345372 24345087 ID=Msa1283110-mRNA-1:exon:8594;Parent=Msa1283110-mRNA-1
chr8_3 exon 24345461 24345556 24345461 ID=Msa1283110-mRNA-1:exon:8595;Parent=Msa1283110-mRNA-1
chr8_3 exon 24345653 24345765 24345653 ID=Msa1283110-mRNA-1:exon:8596;Parent=Msa1283110-mRNA-1
chr8_3 exon 24345855 24345921 24345855 ID=Msa1283110-mRNA-1:exon:8597;Parent=Msa1283110-mRNA-1
chr8_3 exon 24346020 24346112 24346020 ID=Msa1283110-mRNA-1:exon:8598;Parent=Msa1283110-mRNA-1
chr8_3 exon 24346416 24346559 24346416 ID=Msa1283110-mRNA-1:exon:8599;Parent=Msa1283110-mRNA-1
chr8_3 exon 24346730 24346818 24346730 ID=Msa1283110-mRNA-1:exon:8600;Parent=Msa1283110-mRNA-1
chr8_3 exon 24346916 24347021 24346916 ID=Msa1283110-mRNA-1:exon:8601;Parent=Msa1283110-mRNA-1
chr8_3 exon 24347111 24347261 24347111 ID=Msa1283110-mRNA-1:exon:8602;Parent=Msa1283110-mRNA-1
chr8_3 exon 24347532 24347650 24347532 ID=Msa1283110-mRNA-1:exon:8603;Parent=Msa1283110-mRNA-1
chr8_3 exon 24347771 24347935 24347771 ID=Msa1283110-mRNA-1:exon:8604;Parent=Msa1283110-mRNA-1
chr8_3 exon 24348215 24348390 24348215 ID=Msa1283110-mRNA-1:exon:8605;Parent=Msa1283110-mRNA-1
chr8_3 exon 24348690 24348799 24348690 ID=Msa1283110-mRNA-1:exon:8606;Parent=Msa1283110-mRNA-1
chr8_3 exon 24348888 24348997 24348888 ID=Msa1283110-mRNA-1:exon:8607;Parent=Msa1283110-mRNA-1
chr8_3 exon 24349147 24349257 24349147 ID=Msa1283110-mRNA-1:exon:8608;Parent=Msa1283110-mRNA-1
chr8_3 exon 24349357 24349470 24349357 ID=Msa1283110-mRNA-1:exon:8609;Parent=Msa1283110-mRNA-1
chr8_3 exon 24349550 24349752 24349550 ID=Msa1283110-mRNA-1:exon:8610;Parent=Msa1283110-mRNA-1
chr8_3 exon 24350306 24350697 24350306 ID=Msa1283110-mRNA-1:exon:8611;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24345087 24345372 24345087 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24345461 24345556 24345461 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24345653 24345765 24345653 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24345855 24345921 24345855 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24346020 24346112 24346020 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24346416 24346559 24346416 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24346730 24346818 24346730 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24346916 24347021 24346916 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24347111 24347261 24347111 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24347532 24347650 24347532 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24347771 24347935 24347771 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 five_prime_UTR 24348215 24348241 24348215 ID=Msa1283110-mRNA-1:five_prime_utr;Parent=Msa1283110-mRNA-1
chr8_3 CDS 24348242 24348390 24348242 ID=Msa1283110-mRNA-1:cds;Parent=Msa1283110-mRNA-1
chr8_3 CDS 24348690 24348799 24348690 ID=Msa1283110-mRNA-1:cds;Parent=Msa1283110-mRNA-1
chr8_3 CDS 24348888 24348997 24348888 ID=Msa1283110-mRNA-1:cds;Parent=Msa1283110-mRNA-1
chr8_3 CDS 24349147 24349257 24349147 ID=Msa1283110-mRNA-1:cds;Parent=Msa1283110-mRNA-1
chr8_3 CDS 24349357 24349470 24349357 ID=Msa1283110-mRNA-1:cds;Parent=Msa1283110-mRNA-1
chr8_3 CDS 24349550 24349752 24349550 ID=Msa1283110-mRNA-1:cds;Parent=Msa1283110-mRNA-1
chr8_3 CDS 24350306 24350432 24350306 ID=Msa1283110-mRNA-1:cds;Parent=Msa1283110-mRNA-1
chr8_3 three_prime_UTR 24350433 24350697 24350433 ID=Msa1283110-mRNA-1:three_prime_utr;Parent=Msa1283110-mRNA-1
Gene Sequence

>Msa1283110

ATGAGTCCTGTCGATTCTAGGTTCTCATGGGAGACCTATGATGAAGATCTATCTTCTCTAGACGAAAGTTCAAGGATTACAGCTGCTGGACTCTTAGAACACCTCAATGTTACAAGAGACACCAGCGACTATCTATGGTACATAACCAGTGTTGACATAAGTTCATCAGAATCATTTCTTCGAGGAGGACACAAACCCAACATTAATGTGCAGTCTGCAGGACATGCCGTCCATGTGTTTGCTAACGGGCAATTTTTAGGGTCGGCATTTGGGACGAGGAAACAGAGAAGTTGCACATTTAATGGGCCAGTTAATCTACATGCTGGAGCAAATAAAATTGCTCTTCTCAGCGTGACTGTCGGATTGCCGAACGTTGGCCGACATTATGAAACATGGGAGACGGGGATCACTGGTCCAGTTGTGCTCCATGGTCTTGACCATGGACCGAAGGATCTGTCGCATAATAAATGGTCTTATCAGGTTGGACTAAAAGGAGAGGCTGTGAATTTGGTATCACCCAATGGGGTCTCAGCTAATGATTGGGTTCAAGATTCACTAGCTACTCCAAGCCGGTCACAACTAAAATGGTACAAGGCTTATTTTAACACGCCTGAGGGCAACGAACCATTGGCTTTGGACCTAGGAAGTATGGGTAAGGGCCAAGTATGGATAAATGGACAAAGCATAGGAAGATATTGGATGGCTTATGCAAAGGGTGACTGCAATTCCTGCAACTATTCTGGGACATTCAGACCTGCAAAGTGCCAACTTGGTTGTGGACAACCCACTCAAAGATGGTATCATGTTCCAAGGTCATGGCTAAAGCCAACAAAGAACCTAATAGTAGTGTTTGAAGAACTTGGCGGGAATCCTTGGAAAATTTCTTTGGTGAAGAGAACAGTACATACTGCCGCAGCTCGTTAG
Protein sequence

>Msa1283110

MSPVDSRFSWETYDEDLSSLDESSRITAAGLLEHLNVTRDTSDYLWYITSVDISSSESFLRGGHKPNINVQSAGHAVHVFANGQFLGSAFGTRKQRSCTFNGPVNLHAGANKIALLSVTVGLPNVGRHYETWETGITGPVVLHGLDHGPKDLSHNKWSYQVGLKGEAVNLVSPNGVSANDWVQDSLATPSRSQLKWYKAYFNTPEGNEPLALDLGSMGKGQVWINGQSIGRYWMAYAKGDCNSCNYSGTFRPAKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRTVHTAAAR*