AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1322430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322430 MtrunA17_Chr3g0142001 97.720 307 7 0 1 307 427 733 0.0 625
Msa1322430 MtrunA17_Chr1g0155701 76.316 304 71 1 1 303 427 730 1.65e-169 488
Msa1322430 MtrunA17_Chr8g0372421 65.147 307 106 1 1 306 427 733 1.67e-145 430
Msa1322430 MtrunA17_Chr5g0404841 65.798 307 103 2 1 306 425 730 2.77e-139 414
Msa1322430 MtrunA17_Chr2g0299161 55.482 301 132 2 1 300 427 726 9.31e-116 350
Msa1322430 MtrunA17_Chr1g0152571 54.485 301 135 2 1 300 431 730 1.00e-114 347
Msa1322430 MtrunA17_Chr8g0342001 54.902 306 133 4 3 306 428 730 1.36e-107 332
Msa1322430 MtrunA17_Chr2g0330291 55.229 306 132 4 3 306 431 733 5.62e-106 327
Msa1322430 MtrunA17_Chr3g0130711 41.584 303 170 5 8 306 441 740 3.33e-82 263
Msa1322430 MtrunA17_Chr2g0326451 42.857 322 154 7 6 306 125 437 7.93e-80 252
Msa1322430 MtrunA17_Chr4g0029301 45.263 285 143 5 26 306 457 732 4.13e-75 246
Msa1322430 MtrunA17_Chr2g0326481 42.492 313 150 6 15 306 423 726 1.74e-72 239
Msa1322430 MtrunA17_Chr8g0378221 41.447 304 164 7 9 307 491 785 6.92e-66 221
Msa1322430 MtrunA17_Chr5g0408371 39.661 295 161 6 19 306 451 735 2.06e-64 217
Msa1322430 MtrunA17_Chr5g0406921 40.351 285 161 4 26 306 459 738 3.11e-63 213
Msa1322430 MtrunA17_Chr4g0071281 40.614 293 120 5 1 291 3 243 1.51e-62 199
Msa1322430 MtrunA17_Chr2g0301001 37.838 296 175 4 18 306 448 741 2.79e-61 208
Msa1322430 MtrunA17_Chr3g0077531 38.361 305 169 8 7 301 438 733 4.77e-59 201
Msa1322430 MtrunA17_Chr3g0124931 37.329 292 148 6 5 296 431 687 1.67e-54 188
Msa1322430 MtrunA17_Chr4g0037031 35.959 292 159 5 8 297 446 711 3.07e-54 189
Msa1322430 MtrunA17_Chr3g0130721 35.540 287 158 4 10 296 439 698 3.50e-53 185
Msa1322430 MtrunA17_Chr3g0145581 34.868 304 155 9 2 297 439 707 1.74e-50 178
Msa1322430 MtrunA17_Chr2g0326521 42.857 224 96 6 88 306 4 200 3.51e-50 168
Msa1322430 MtrunA17_Chr2g0307981 33.218 289 150 10 8 288 38 291 9.94e-35 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322430 AT1G45130.2 68.475 295 93 0 8 302 359 653 8.59e-146 425
Msa1322430 AT1G45130.1 68.475 295 93 0 8 302 438 732 8.21e-145 425
Msa1322430 AT4G36360.2 63.961 308 110 1 1 307 432 739 5.00e-144 427
Msa1322430 AT4G36360.1 63.961 308 110 1 1 307 432 739 5.83e-144 426
Msa1322430 AT4G26140.1 52.159 301 141 3 1 300 428 726 3.15e-110 336
Msa1322430 AT3G13750.1 55.556 306 131 4 3 306 437 739 7.57e-110 338
Msa1322430 AT5G56870.1 54.153 301 135 3 1 300 426 724 3.94e-109 333
Msa1322430 AT3G52840.1 52.492 301 141 2 1 300 426 725 7.01e-109 332
Msa1322430 AT3G52840.2 52.492 301 141 2 1 300 480 779 1.39e-108 333
Msa1322430 AT4G26140.7 48.160 326 141 4 1 300 428 751 1.68e-104 322
Msa1322430 AT4G26140.9 44.863 292 133 4 1 266 428 717 1.39e-84 269
Msa1322430 AT5G63810.1 43.377 302 162 4 6 301 440 738 1.08e-81 262
Msa1322430 AT2G28470.1 44.178 292 152 5 12 299 451 735 1.08e-76 251
Msa1322430 AT2G28470.3 44.178 292 152 5 12 299 451 735 1.08e-76 251
Msa1322430 AT2G28470.2 44.178 292 152 5 12 299 445 729 1.11e-76 250
Msa1322430 AT2G28470.4 44.178 292 152 5 12 299 445 729 1.11e-76 250
Msa1322430 AT5G20710.2 39.936 313 176 7 3 307 226 534 2.41e-67 221
Msa1322430 AT5G20710.1 39.936 313 176 7 3 307 431 739 3.21e-66 222
Msa1322430 AT2G32810.1 43.003 293 155 7 9 296 470 755 3.65e-66 223
Msa1322430 AT2G32810.2 43.003 293 155 7 9 296 470 755 4.28e-66 222
Msa1322430 AT1G77410.2 42.069 290 132 8 10 296 330 586 2.06e-61 207
Msa1322430 AT1G77410.4 42.069 290 132 8 10 296 330 586 2.06e-61 207
Msa1322430 AT1G77410.3 42.069 290 132 8 10 296 441 697 8.27e-61 207
Msa1322430 AT1G77410.1 42.069 290 132 8 10 296 436 692 8.45e-61 207
Msa1322430 AT2G28470.5 42.412 257 137 5 12 264 451 700 8.13e-60 203
Msa1322430 AT5G63800.1 39.583 288 147 5 9 296 442 702 4.27e-59 201
Msa1322430 AT4G26140.6 45.226 199 107 2 1 199 428 624 1.50e-55 190
Msa1322430 AT4G26140.3 45.226 199 107 2 1 199 426 622 1.59e-55 190
Msa1322430 AT4G26140.2 45.226 199 107 2 1 199 426 622 1.59e-55 190
Msa1322430 AT2G16730.1 37.891 256 135 4 32 286 476 708 1.51e-52 184
Msa1322430 AT4G35010.1 34.507 284 157 7 5 286 449 705 2.46e-48 173
Msa1322430 AT4G38590.1 34.386 285 157 6 8 289 382 639 1.38e-47 171
Msa1322430 AT1G31740.1 35.154 293 142 7 3 291 429 677 1.15e-42 156
Msa1322430 AT4G38590.2 32.982 285 157 7 8 289 450 703 2.36e-42 156
Msa1322430 AT4G26140.8 44.715 123 67 1 1 123 428 549 3.12e-31 123
Msa1322430 AT4G26140.4 37.162 148 67 2 1 123 428 574 2.36e-26 109
Msa1322430 AT4G26140.5 37.162 148 67 2 1 123 428 574 2.36e-26 109
Msa1322430 AT2G04060.1 30.455 220 117 4 14 233 132 315 2.38e-20 91.3

Find 225 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAAGGTTTACAGATTT+TGG 0.145312 8_4:-29469121 Msa1322430:intron
CTAGGCTTATATGGTTTATT+TGG 0.151791 8_4:+29469260 None:intergenic
TCCTTCAAATGACTATATTT+TGG 0.162196 8_4:+29468483 None:intergenic
CCTAAACTGGGCTGCAAATA+TGG 0.190750 8_4:-29469557 Msa1322430:five_prime_UTR
TGCAATTCCTGCAACTATTC+TGG 0.212314 8_4:-29466353 Msa1322430:CDS
CAAAGAAGAATTCTAATTTC+TGG 0.218304 8_4:-29470714 Msa1322430:five_prime_UTR
TAAATTACAAATGATATTCT+AGG 0.219127 8_4:+29465417 None:intergenic
CAGAGAAGTTGCACATTTAA+TGG 0.237000 8_4:-29467118 Msa1322430:CDS
TTATAGACACTTATGTCTTC+TGG 0.248647 8_4:-29470526 Msa1322430:five_prime_UTR
GGCTTTGGACCTAGGAAGTA+TGG 0.252554 8_4:-29466444 Msa1322430:CDS
TTCTAGATTGAGAACGAATA+TGG 0.253847 8_4:-29469619 Msa1322430:intron
CTGGTCATGCATACCTAAAC+TGG 0.257224 8_4:-29469570 Msa1322430:five_prime_UTR
GTTGAACAGGTTGGACTAAA+AGG 0.259985 8_4:-29466681 Msa1322430:intron
GTTCTTCAAACACTACTATT+AGG 0.264193 8_4:+29465684 None:intergenic
CATACTTCAGGGGTGCTTCT+TGG 0.275672 8_4:+29470678 None:intergenic
AAAAGGAGAGGCTGTGAATT+TGG 0.279573 8_4:-29466664 Msa1322430:CDS
CAGAAATTAGAATTCTTCTT+TGG 0.285761 8_4:+29470715 None:intergenic
ATCCGTTCTGAAGCTTATTC+CGG 0.289249 8_4:+29470145 None:intergenic
TGAACTGGTCGCTGGTGAAT+TGG 0.296094 8_4:+29469094 None:intergenic
CATACCTGAGAGAGAATTAT+TGG 0.300613 8_4:+29469934 None:intergenic
ACCAAGGCTACCCTCGTTTC+AGG 0.301207 8_4:+29465555 None:intergenic
CCATATTTGCAGCCCAGTTT+AGG 0.306276 8_4:+29469557 None:intergenic
GAATCCTTGGAAAATTTCTT+TGG 0.309226 8_4:-29465654 Msa1322430:CDS
GTTCATGTGTGGTGTGAAAA+TGG 0.313581 8_4:-29470929 Msa1322430:five_prime_UTR
AAATGAGTCCTGTCGATTCT+AGG 0.326359 8_4:-29467789 Msa1322430:CDS
GCTCCAGCATGTAGATTAAC+TGG 0.327345 8_4:+29467094 None:intergenic
CAACCAAGTTGGCACTTTGC+AGG 0.328605 8_4:+29466320 None:intergenic
TTCTTACCATATTCATCAAT+TGG 0.333167 8_4:+29468783 None:intergenic
GTCCACATGCTAGGCTTATA+TGG 0.334733 8_4:+29469251 None:intergenic
GCATAATAAATGGTCTTATC+AGG 0.334788 8_4:-29466793 Msa1322430:intron
CAAGCCGGTCACAACTAAAA+TGG 0.339053 8_4:-29466587 Msa1322430:CDS
AAGGGCCAAGTATGGATAAA+TGG 0.348408 8_4:-29466419 Msa1322430:CDS
TGCAAATATGGCTGTTGGAT+TGG 0.363301 8_4:-29469545 Msa1322430:five_prime_UTR
GACAAAGCATAGGAAGATAT+TGG 0.368369 8_4:-29466397 Msa1322430:CDS
CAGCGTGACTGTCGGATTGC+CGG 0.369336 8_4:-29467053 Msa1322430:intron
AGAGAAGTTGCACATTTAAT+GGG 0.370621 8_4:-29467117 Msa1322430:CDS
TGAAAAGCTGTTTCAGTCTC+AGG 0.371686 8_4:-29469962 Msa1322430:five_prime_UTR
GAGACACCAGCGACTATCTA+TGG 0.372196 8_4:-29467672 Msa1322430:CDS
TCCGTTCTGAAGCTTATTCC+GGG 0.373173 8_4:+29470146 None:intergenic
AGGATCTGTCGCATAATAAA+TGG 0.374726 8_4:-29466803 Msa1322430:CDS
GATGCTCCAATTGATGAATA+TGG 0.376118 8_4:-29468789 Msa1322430:intron
GATCCTACTGTTACACCATT+AGG 0.383098 8_4:-29468414 Msa1322430:five_prime_UTR
TATATAAAATCATGGTGGTT+TGG 0.385322 8_4:+29465450 None:intergenic
GCAATCAGGAAGGATACTTA+TGG 0.386473 8_4:+29468143 None:intergenic
AAAGAGCTCACCACAGGATC+CGG 0.390775 8_4:+29469481 None:intergenic
AACATCAAGACCACCATGTT+TGG 0.392980 8_4:+29470547 None:intergenic
TCAAGACCATGGAGCACAAC+TGG 0.398051 8_4:+29466837 None:intergenic
TTCCACTCAGCGCATATATA+AGG 0.400728 8_4:+29470292 None:intergenic
ACCTGCTGAAGTGTTCCTAA+TGG 0.401362 8_4:+29468399 None:intergenic
CACTATGTTTAGGTTTGGTC+AGG 0.404037 8_4:-29468509 Msa1322430:intron
AAGAACTTGGCGGGAATCCT+TGG 0.405390 8_4:-29465667 Msa1322430:CDS
TTTGTATGTAGCTTCACTTA+GGG 0.406029 8_4:-29465505 Msa1322430:three_prime_UTR
AAGGAAGATATGATTTAGTA+AGG 0.409592 8_4:-29470366 Msa1322430:five_prime_UTR
TGAGCATGCTTTGGTTTCTT+CGG 0.409709 8_4:-29468436 Msa1322430:five_prime_UTR
GTTTGTATGTAGCTTCACTT+AGG 0.414133 8_4:-29465506 Msa1322430:three_prime_UTR
ACTACTATTAGGTTCTTTGT+TGG 0.415891 8_4:+29465695 None:intergenic
GATTGGGAACAGGAGTCCCT+TGG 0.418192 8_4:-29469528 Msa1322430:five_prime_UTR
TATAGACACTTATGTCTTCT+GGG 0.418303 8_4:-29470525 Msa1322430:five_prime_UTR
ATATGCGCTGAGTGGAACTT+TGG 0.418404 8_4:-29470286 Msa1322430:five_prime_UTR
CTACAGATTAATTCATGTAA+TGG 0.419307 8_4:-29469305 Msa1322430:intron
CTTCTCTAGACGAAAGTTCA+AGG 0.419593 8_4:-29467735 Msa1322430:CDS
GGGCAACGAACCATTGGCTT+TGG 0.420385 8_4:-29466459 Msa1322430:CDS
ATGGGGTCTCAGCTAATGAT+TGG 0.421674 8_4:-29466632 Msa1322430:CDS
GAACTGGTCGCTGGTGAATT+GGG 0.422236 8_4:+29469095 None:intergenic
AACGGATAACGGACCTTTCA+AGG 0.423232 8_4:-29470129 Msa1322430:intron
TACATTTGCAGTATTAAATA+CGG 0.423954 8_4:+29468113 None:intergenic
CCGTCCATGTGTTTGCTAAC+GGG 0.424113 8_4:-29467262 Msa1322430:CDS
CAAGCGATGTGAGCATGCTT+TGG 0.424324 8_4:-29468445 Msa1322430:five_prime_UTR
GTATGGGTAAGGGCCAAGTA+TGG 0.425767 8_4:-29466427 Msa1322430:CDS
GTATTCTCTGCAGGAACTAC+AGG 0.432210 8_4:-29468252 Msa1322430:five_prime_UTR
GCAATTCCTGCAACTATTCT+GGG 0.432599 8_4:-29466352 Msa1322430:CDS
CTGTCGATTCTAGGTTCTCA+TGG 0.435814 8_4:-29467780 Msa1322430:CDS
GCAAATATGGCTGTTGGATT+GGG 0.435937 8_4:-29469544 Msa1322430:five_prime_UTR
AAGTTCACTCGCGAATTCTC+TGG 0.443666 8_4:-29465583 Msa1322430:three_prime_UTR
GAATGTCCCAGAATAGTTGC+AGG 0.446858 8_4:+29466346 None:intergenic
TTTGTCCATTTATCCATACT+TGG 0.449902 8_4:+29466414 None:intergenic
ACGAATATGGACCAGAGAGC+GGG 0.449957 8_4:-29469606 Msa1322430:five_prime_UTR
AATTCACCAGCGACCAGTTC+AGG 0.450278 8_4:-29469092 Msa1322430:five_prime_UTR
GGCACATACTTCAACCAAAC+AGG 0.450745 8_4:+29470167 None:intergenic
CAGGCTCATGTATTCTCTGC+AGG 0.451671 8_4:-29468261 Msa1322430:five_prime_UTR
GCAGACTGCACATTAATGTT+GGG 0.452299 8_4:+29467293 None:intergenic
AATACGGAAGTTATGCAATC+AGG 0.453209 8_4:+29468129 None:intergenic
ACAATGTTGTTACTACTACT+AGG 0.454031 8_4:+29470802 None:intergenic
AGCGGGGCAATGGGAGCTGC+TGG 0.456168 8_4:-29469589 Msa1322430:five_prime_UTR
TCTAGCAAACTATCATCTAA+AGG 0.456243 8_4:-29468217 Msa1322430:five_prime_UTR
TCTAAAGGCTGCTGCTACTG+TGG 0.460350 8_4:-29468202 Msa1322430:five_prime_UTR
TACCATGGAGGAACCAACTT+TGG 0.460352 8_4:-29468855 Msa1322430:five_prime_UTR
ATAAGGTCCAATGCGGAGAT+TGG 0.463256 8_4:+29470309 None:intergenic
TGAATTTGGTATCACCCAAT+GGG 0.463630 8_4:-29466650 Msa1322430:CDS
AGACCTGCAAAGTGCCAACT+TGG 0.468347 8_4:-29466323 Msa1322430:CDS
AACATTAATGTGCAGTCTGC+AGG 0.468569 8_4:-29467290 Msa1322430:CDS
ACGGACAAAGGTGAAACTTA+AGG 0.469754 8_4:+29468893 None:intergenic
TATTGGATGGCTTATGCAAA+GGG 0.471536 8_4:-29466380 Msa1322430:CDS
TTATTATGCGACAGATCCTT+CGG 0.472013 8_4:+29466807 None:intergenic
ATTAAGGGTATTACATTGCC+AGG 0.472942 8_4:+29470485 None:intergenic
ATGGCTGTTGGATTGGGAAC+AGG 0.475126 8_4:-29469538 Msa1322430:five_prime_UTR
AGTTGCTCGTTTCATTCAGA+AGG 0.475641 8_4:-29469056 Msa1322430:five_prime_UTR
CATTATGAAACATGGGAGAC+GGG 0.480780 8_4:-29466870 Msa1322430:CDS
GGACCAGAGAGCGGGGCAAT+GGG 0.481155 8_4:-29469598 Msa1322430:five_prime_UTR
CTTTATGCCAATCTCCGCAT+TGG 0.482995 8_4:-29470316 Msa1322430:five_prime_UTR
TATGCGCTGAGTGGAACTTT+GGG 0.484699 8_4:-29470285 Msa1322430:intron
TGCAGACTGCACATTAATGT+TGG 0.486330 8_4:+29467292 None:intergenic
GAACCATTGGCTTTGGACCT+AGG 0.487914 8_4:-29466452 Msa1322430:CDS
AGTTCAAGGATTACAGCTGC+TGG 0.488592 8_4:-29467721 Msa1322430:CDS
GGTGTAGAGGAATTCCTGTT+TGG 0.489840 8_4:-29470181 Msa1322430:intron
CAATGTTGTTACTACTACTA+GGG 0.491765 8_4:+29470803 None:intergenic
AGAAAGTCTCTTCTCATCAA+TGG 0.493105 8_4:-29470738 Msa1322430:five_prime_UTR
GCAAATGCTAGATCCTGAAC+TGG 0.493575 8_4:+29469079 None:intergenic
TCATAGCTTGTAGTAATGAA+TGG 0.494227 8_4:+29468816 None:intergenic
ATTGGGAACAGGAGTCCCTT+GGG 0.494679 8_4:-29469527 Msa1322430:five_prime_UTR
TCTTCTTCTTCTTTGAGACA+TGG 0.494763 8_4:-29470850 Msa1322430:five_prime_UTR
ACATGGGAGACGGGGATCAC+TGG 0.494793 8_4:-29466861 Msa1322430:CDS
ACTGGTCCAGTTGTGCTCCA+TGG 0.498783 8_4:-29466843 Msa1322430:CDS
AGAAGATAGATCTTCATCAT+AGG 0.502038 8_4:+29467753 None:intergenic
TGGTCCAATAATTCTCTCTC+AGG 0.502761 8_4:-29469938 Msa1322430:intron
GCCAATGGTTCGTTGCCCTC+AGG 0.502891 8_4:+29466464 None:intergenic
ACCAACTTTGGACGATCAGC+TGG 0.503084 8_4:-29468843 Msa1322430:five_prime_UTR
TGGGTTTAGGCTGCAATGCA+AGG 0.504866 8_4:-29470018 Msa1322430:intron
TCATTAGCTGAGACCCCATT+GGG 0.506426 8_4:+29466636 None:intergenic
GGCCCTTACCCATACTTCCT+AGG 0.508915 8_4:+29466435 None:intergenic
TGGACCAGAGAGCGGGGCAA+TGG 0.509550 8_4:-29469599 Msa1322430:five_prime_UTR
GATGTTCATGAACCATCTCC+TGG 0.509570 8_4:-29470503 Msa1322430:five_prime_UTR
ATAGTAGTGTTTGAAGAACT+TGG 0.510118 8_4:-29465680 Msa1322430:CDS
GGACCTAGGAAGTATGGGTA+AGG 0.511953 8_4:-29466438 Msa1322430:CDS
GCCTGAGGGCAACGAACCAT+TGG 0.512441 8_4:-29466465 Msa1322430:CDS
AAGGGTCGGCATTTGGGACG+AGG 0.513971 8_4:-29467144 Msa1322430:CDS
GTTGGCTTTAGCCATGACCT+TGG 0.514639 8_4:+29465713 None:intergenic
GGTATTACATTGCCAGGAGA+TGG 0.515365 8_4:+29470491 None:intergenic
AAGAGCTCACCACAGGATCC+GGG 0.516437 8_4:+29469482 None:intergenic
CTAGCATGTGGACGGAGTCT+TGG 0.516868 8_4:-29469241 Msa1322430:five_prime_UTR
GAAAATTACAATCTTAAGAC+GGG 0.517094 8_4:-29465354 Msa1322430:three_prime_UTR
GCCGTCCATGTGTTTGCTAA+CGG 0.518416 8_4:-29467263 Msa1322430:CDS
TGGGGTCTCAGCTAATGATT+GGG 0.518992 8_4:-29466631 Msa1322430:CDS
ATAAGCTTCAGAACGGATAA+CGG 0.519465 8_4:-29470140 Msa1322430:five_prime_UTR
ACCATTAGGAACACTTCAGC+AGG 0.524150 8_4:-29468400 Msa1322430:intron
ATCATTAGCTGAGACCCCAT+TGG 0.526712 8_4:+29466635 None:intergenic
GGCACTATGACTTGCCTCCA+TGG 0.528134 8_4:-29468167 Msa1322430:five_prime_UTR
GCCAAAATATAGTCATTTGA+AGG 0.528138 8_4:-29468484 Msa1322430:five_prime_UTR
CAAGACTCCGTCCACATGCT+AGG 0.528557 8_4:+29469242 None:intergenic
GGTGCTTCTTGGATAGTGAA+TGG 0.529489 8_4:+29470689 None:intergenic
GTGAATTTGGTATCACCCAA+TGG 0.529765 8_4:-29466651 Msa1322430:CDS
GCGACAGATCCTTCGGTCCA+TGG 0.535103 8_4:+29466814 None:intergenic
TGGGCTGCAAATATGGCTGT+TGG 0.538441 8_4:-29469550 Msa1322430:five_prime_UTR
TAGTGTTTGAAGAACTTGGC+GGG 0.545727 8_4:-29465676 Msa1322430:CDS
GCAAAGTGCCAACTTGGTTG+TGG 0.547646 8_4:-29466317 Msa1322430:CDS
TCTGGCTTTGCCTGAAACGA+GGG 0.548463 8_4:-29465565 Msa1322430:three_prime_UTR
TCTCCCATGTTTCATAATGT+CGG 0.551448 8_4:+29466874 None:intergenic
CTCTGGCTTTGCCTGAAACG+AGG 0.552043 8_4:-29465566 Msa1322430:three_prime_UTR
ACCAGCTGATCGTCCAAAGT+TGG 0.553003 8_4:+29468842 None:intergenic
AAAATTGTACCATCTTTGAG+TGG 0.553803 8_4:+29466289 None:intergenic
GGGCCAGTTAATCTACATGC+TGG 0.558839 8_4:-29467097 Msa1322430:CDS
AGAAAATTACAATCTTAAGA+CGG 0.559403 8_4:-29465355 Msa1322430:three_prime_UTR
GCTCTTCTCAGCGTGACTGT+CGG 0.563832 8_4:-29467061 Msa1322430:CDS
GGTACTATAATTTATCATAA+CGG 0.563931 8_4:+29468874 None:intergenic
CATGAGAACCTAGAATCGAC+AGG 0.568957 8_4:+29467781 None:intergenic
GGACGGAGTCTTGGAGTGGC+TGG 0.569999 8_4:-29469232 Msa1322430:intron
GTTCCTAATGGTGTAACAGT+AGG 0.571055 8_4:+29468411 None:intergenic
GGTATCATGTTCCAAGGTCA+TGG 0.571810 8_4:-29465724 Msa1322430:CDS
AAATTGTACCATCTTTGAGT+GGG 0.574497 8_4:+29466290 None:intergenic
GCTCGTTTCATTCAGAAGGG+TGG 0.575864 8_4:-29469052 Msa1322430:five_prime_UTR
CTAGATCCTGAACTGGTCGC+TGG 0.577176 8_4:+29469086 None:intergenic
TATGTACCATAGATAGTCGC+TGG 0.579264 8_4:+29467666 None:intergenic
TCATCAGAATCATTTCTTCG+AGG 0.581779 8_4:-29467326 Msa1322430:CDS
GTGCTCCATGGTCTTGACCA+TGG 0.585112 8_4:-29466831 Msa1322430:CDS
GCTTTGGACCTAGGAAGTAT+GGG 0.586075 8_4:-29466443 Msa1322430:CDS
TTGTATGTAGCTTCACTTAG+GGG 0.586985 8_4:-29465504 Msa1322430:three_prime_UTR
GTCCAAAGTTGGTTCCTCCA+TGG 0.588793 8_4:+29468853 None:intergenic
GTTGCTCGTTTCATTCAGAA+GGG 0.589466 8_4:-29469055 Msa1322430:five_prime_UTR
ATATTGGATGGCTTATGCAA+AGG 0.589804 8_4:-29466381 Msa1322430:CDS
TGGTGTCTCTTGTAACATTG+AGG 0.590267 8_4:+29467686 None:intergenic
TTGGCCGACATTATGAAACA+TGG 0.592890 8_4:-29466878 Msa1322430:CDS
TCAGAATCATTTCTTCGAGG+AGG 0.593391 8_4:-29467323 Msa1322430:CDS
TGGATAAATGGACAAAGCAT+AGG 0.594045 8_4:-29466407 Msa1322430:CDS
TCGGTCCATGGTCAAGACCA+TGG 0.594522 8_4:+29466826 None:intergenic
AGTCCCTTGGGTGATGTGCA+AGG 0.594773 8_4:-29469515 Msa1322430:five_prime_UTR
GTGGACAACCCACTCAAAGA+TGG 0.595248 8_4:-29466298 Msa1322430:intron
GTTTGGTTGAAGTATGTGCC+CGG 0.595819 8_4:-29470164 Msa1322430:five_prime_UTR
ACATTATGAAACATGGGAGA+CGG 0.597371 8_4:-29466871 Msa1322430:CDS
TGTCGATTCTAGGTTCTCAT+GGG 0.600914 8_4:-29467779 Msa1322430:CDS
TGGTCTTGACCATGGACCGA+AGG 0.602007 8_4:-29466823 Msa1322430:CDS
GTGCAAGGAAAATGATGCCC+CGG 0.603150 8_4:-29469500 Msa1322430:five_prime_UTR
ATTCACTAGCTACTCCAAGC+CGG 0.607564 8_4:-29466602 Msa1322430:CDS
CTTCCTAGGTCCAAAGCCAA+TGG 0.611721 8_4:+29466449 None:intergenic
GTCGCAGGTATCATGTTCCA+AGG 0.612046 8_4:-29465730 Msa1322430:intron
ACTATCTATGGTACATAACC+AGG 0.614868 8_4:-29467660 Msa1322430:intron
CTAATTAAGAAAGCCAAACA+TGG 0.617287 8_4:-29470560 Msa1322430:five_prime_UTR
AAGCATAGGAAGATATTGGA+TGG 0.618267 8_4:-29466393 Msa1322430:CDS
CCCGTTAGCAAACACATGGA+CGG 0.620558 8_4:+29467262 None:intergenic
ATTATGAAACATGGGAGACG+GGG 0.624351 8_4:-29466869 Msa1322430:CDS
CGAATATGGACCAGAGAGCG+GGG 0.624874 8_4:-29469605 Msa1322430:five_prime_UTR
AACGAATATGGACCAGAGAG+CGG 0.624993 8_4:-29469607 Msa1322430:five_prime_UTR
GACCTAGGAAGTATGGGTAA+GGG 0.625201 8_4:-29466437 Msa1322430:CDS
TATGATAAATTATAGTACCA+TGG 0.626716 8_4:-29468870 Msa1322430:five_prime_UTR
TAATTTATCATAACGGACAA+AGG 0.628776 8_4:+29468881 None:intergenic
TGGGTTGTCCACAACCAAGT+TGG 0.630478 8_4:+29466309 None:intergenic
TTTCCTTGCACATCACCCAA+GGG 0.630779 8_4:+29469512 None:intergenic
AGAGCTCACCACAGGATCCG+GGG 0.631333 8_4:+29469483 None:intergenic
GAAAAGCTGTTTCAGTCTCA+GGG 0.631820 8_4:-29469961 Msa1322430:five_prime_UTR
CTCATATGTGAATTACTACA+TGG 0.632328 8_4:-29469029 Msa1322430:intron
GGAAGGATACTTATGGACCA+TGG 0.637248 8_4:+29468150 None:intergenic
CGGAAGTTATGCAATCAGGA+AGG 0.637295 8_4:+29468133 None:intergenic
TGGTCATGCATACCTAAACT+GGG 0.638626 8_4:-29469569 Msa1322430:five_prime_UTR
AACTTTGGACGATCAGCTGG+TGG 0.640845 8_4:-29468840 Msa1322430:five_prime_UTR
GTCACAACTAAAATGGTACA+AGG 0.642717 8_4:-29466580 Msa1322430:intron
AACCATATAAGCCTAGCATG+TGG 0.643949 8_4:-29469253 Msa1322430:five_prime_UTR
GTAGTGTTTGAAGAACTTGG+CGG 0.651378 8_4:-29465677 Msa1322430:CDS
ATATAAGCCTAGCATGTGGA+CGG 0.652636 8_4:-29469249 Msa1322430:five_prime_UTR
CTACTAGACAAGTTCATGTG+TGG 0.655745 8_4:-29470940 None:intergenic
GACCTTATATATGCGCTGAG+TGG 0.656602 8_4:-29470294 Msa1322430:five_prime_UTR
AAATGATGCCCCGGATCCTG+TGG 0.661573 8_4:-29469491 Msa1322430:intron
GCCCGGAATAAGCTTCAGAA+CGG 0.662264 8_4:-29470147 Msa1322430:five_prime_UTR
ATTGCCCGTTAGCAAACACA+TGG 0.666309 8_4:+29467258 None:intergenic
TTGAGTTCACTAACGAGCTG+CGG 0.670744 8_4:+29465610 None:intergenic
GGTGGGAACTCAAACGTCAG+TGG 0.672709 8_4:-29467815 Msa1322430:five_prime_UTR
TTATATAACTTATTGCACCA+AGG 0.676455 8_4:+29465539 None:intergenic
TGGCCGACATTATGAAACAT+GGG 0.682911 8_4:-29466877 Msa1322430:CDS
CGCATATATAAGGTCCAATG+CGG 0.688851 8_4:+29470302 None:intergenic
CAATTGCAAACATACTTCAG+GGG 0.689900 8_4:+29470668 None:intergenic
ATTAAGAAAGCCAAACATGG+TGG 0.693632 8_4:-29470557 Msa1322430:five_prime_UTR
ATGTGGACGGAGTCTTGGAG+TGG 0.699415 8_4:-29469236 Msa1322430:five_prime_UTR
ACAGGTTGGACTAAAAGGAG+AGG 0.707740 8_4:-29466676 Msa1322430:intron
GAATTTGGTATCACCCAATG+GGG 0.708312 8_4:-29466649 Msa1322430:CDS
GATAAATTATAGTACCATGG+AGG 0.734146 8_4:-29468867 Msa1322430:five_prime_UTR
AAGCTGTTTCAGTCTCAGGG+TGG 0.745842 8_4:-29469958 Msa1322430:five_prime_UTR
AGGATACTTATGGACCATGG+AGG 0.747272 8_4:+29468153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATTTTTTTTT+GGG - chr8_4:29466251-29466270 Msa1322430:intron 0.0%
!! TTTACAATATTATTCTTTAA+TGG - chr8_4:29466086-29466105 Msa1322430:intron 10.0%
!! ATATTATCAATATTTCAAAA+TGG - chr8_4:29470134-29470153 Msa1322430:five_prime_UTR 10.0%
!! AAAAAGGAATGAAATTAAAA+TGG + chr8_4:29466049-29466068 None:intergenic 15.0%
!!! TCTTTGATTTTATGATAATT+TGG - chr8_4:29466191-29466210 Msa1322430:intron 15.0%
!!! ATATATTTTTTTTTGGGTTT+AGG - chr8_4:29466257-29466276 Msa1322430:intron 15.0%
!! AATATAGGAATAAATTATGA+TGG + chr8_4:29468397-29468416 None:intergenic 15.0%
!!! TTGAAATATTGATAATATGA+GGG + chr8_4:29470132-29470151 None:intergenic 15.0%
!!! TTTGAAATATTGATAATATG+AGG + chr8_4:29470133-29470152 None:intergenic 15.0%
!!! TGATATTAATTTGATAACAT+GGG + chr8_4:29470257-29470276 None:intergenic 15.0%
!!! ATGATATTAATTTGATAACA+TGG + chr8_4:29470258-29470277 None:intergenic 15.0%
!! TAAATTACAAATGATATTCT+AGG + chr8_4:29470874-29470893 None:intergenic 15.0%
!!! AACATTGTTTGTTTTGTTTT+TGG - chr8_4:29465501-29465520 Msa1322430:three_prime_UTR 20.0%
!!! TTGTTTTTCTGATTATGTAT+GGG - chr8_4:29465878-29465897 Msa1322430:intron 20.0%
!! CACAACAAAATTACATAAAA+AGG + chr8_4:29466065-29466084 None:intergenic 20.0%
!!! TTTATGATAATTTGGTTTCT+CGG - chr8_4:29466199-29466218 Msa1322430:intron 20.0%
!! ACTCAATAAGTATATAATGA+TGG + chr8_4:29466936-29466955 None:intergenic 20.0%
!! CTGAAAAATAAATTCATAGA+AGG + chr8_4:29467295-29467314 None:intergenic 20.0%
!! TGACTTTAACTATTTGAATA+AGG - chr8_4:29467326-29467345 Msa1322430:CDS 20.0%
!! GGTACTATAATTTATCATAA+CGG + chr8_4:29467417-29467436 None:intergenic 20.0%
!! TATGATAAATTATAGTACCA+TGG - chr8_4:29467418-29467437 Msa1322430:intron 20.0%
!!! TTTATGTTAAAGCATTATTG+CGG - chr8_4:29467962-29467981 Msa1322430:intron 20.0%
!! TACATTTGCAGTATTAAATA+CGG + chr8_4:29468178-29468197 None:intergenic 20.0%
!! TTTAATCAACATAGCTTAAA+AGG + chr8_4:29468217-29468236 None:intergenic 20.0%
!!! TTTCTAGTTTGTATCTATTT+TGG + chr8_4:29468279-29468298 None:intergenic 20.0%
!! ACTATTACATCACATTTAAA+TGG + chr8_4:29468371-29468390 None:intergenic 20.0%
!! TGATATATATTTATACAGGT+GGG - chr8_4:29468456-29468475 Msa1322430:five_prime_UTR 20.0%
!!! TTTCAAATGTTACTGTTTTT+TGG - chr8_4:29468912-29468931 Msa1322430:five_prime_UTR 20.0%
!!! TTACTATTGCCATTTTTTAT+TGG - chr8_4:29469380-29469399 Msa1322430:intron 20.0%
!!! GATATTAATTTGATAACATG+GGG + chr8_4:29470256-29470275 None:intergenic 20.0%
!! TATAATTTCAATGACCAAAT+TGG - chr8_4:29470383-29470402 Msa1322430:intron 20.0%
!! AATAATAATATTAGTGGCAT+TGG + chr8_4:29470472-29470491 None:intergenic 20.0%
!! CAGAAGAATAATAATATTAG+TGG + chr8_4:29470478-29470497 None:intergenic 20.0%
!!! TCTTTTATATAAAATCATGG+TGG + chr8_4:29470846-29470865 None:intergenic 20.0%
!!! GCATCTTTTATATAAAATCA+TGG + chr8_4:29470849-29470868 None:intergenic 20.0%
!! AGAAAATTACAATCTTAAGA+CGG - chr8_4:29470933-29470952 Msa1322430:five_prime_UTR 20.0%
! CAGAAATTAGAATTCTTCTT+TGG + chr8_4:29465576-29465595 None:intergenic 25.0%
! CAAAGAAGAATTCTAATTTC+TGG - chr8_4:29465574-29465593 Msa1322430:three_prime_UTR 25.0%
!!! AAATGTGTGATTTTTAGATG+TGG - chr8_4:29465699-29465718 Msa1322430:CDS 25.0%
!!! AATGTGTGATTTTTAGATGT+GGG - chr8_4:29465700-29465719 Msa1322430:CDS 25.0%
!!! GTTGTTTTTCTGATTATGTA+TGG - chr8_4:29465877-29465896 Msa1322430:intron 25.0%
! AAGGAAGATATGATTTAGTA+AGG - chr8_4:29465922-29465941 Msa1322430:intron 25.0%
! TATTAAGACAATGCAAAAAG+TGG - chr8_4:29465947-29465966 Msa1322430:intron 25.0%
! ATTAAGACAATGCAAAAAGT+GGG - chr8_4:29465948-29465967 Msa1322430:intron 25.0%
! ATTATTCTTTAATGGTGTAG+AGG - chr8_4:29466094-29466113 Msa1322430:intron 25.0%
! AAGAAAAATTCAACCTTGAA+AGG + chr8_4:29466175-29466194 None:intergenic 25.0%
! ATCTTGAAGTAGTAATTTGA+TGG + chr8_4:29466467-29466486 None:intergenic 25.0%
! TTACATGAATTAATCTGTAG+TGG + chr8_4:29466983-29467002 None:intergenic 25.0%
! CTACAGATTAATTCATGTAA+TGG - chr8_4:29466983-29467002 Msa1322430:intron 25.0%
!! ATCATAAGGTTTACAGATTT+TGG - chr8_4:29467167-29467186 Msa1322430:intron 25.0%
!!! TAATTTATCATAACGGACAA+AGG + chr8_4:29467410-29467429 None:intergenic 25.0%
! TTCTTACCATATTCATCAAT+TGG + chr8_4:29467508-29467527 None:intergenic 25.0%
!! TCCTTCAAATGACTATATTT+TGG + chr8_4:29467808-29467827 None:intergenic 25.0%
!! CAAATGTAAGAATATTTTGC+AGG - chr8_4:29468190-29468209 Msa1322430:five_prime_UTR 25.0%
! CAAATAATTGATTGATGCAA+AGG + chr8_4:29468429-29468448 None:intergenic 25.0%
! GGACTGATATATATTTATAC+AGG - chr8_4:29468452-29468471 Msa1322430:five_prime_UTR 25.0%
! CTGATATATATTTATACAGG+TGG - chr8_4:29468455-29468474 Msa1322430:five_prime_UTR 25.0%
!! AGTTTTCGTAATTCATTTGA+TGG + chr8_4:29468698-29468717 None:intergenic 25.0%
! TATCAAAGCAATAATTTCCT+AGG - chr8_4:29468737-29468756 Msa1322430:intron 25.0%
! AATCTGAAAGATGCTTAAAA+TGG + chr8_4:29468842-29468861 None:intergenic 25.0%
!!! AAATGTTACTGTTTTTTGGT+TGG - chr8_4:29468916-29468935 Msa1322430:five_prime_UTR 25.0%
! ATTAATTCTGAGTTAACTGA+AGG - chr8_4:29469105-29469124 Msa1322430:five_prime_UTR 25.0%
!!! TTCAAGTTGGATTTAGAATA+TGG + chr8_4:29469274-29469293 None:intergenic 25.0%
! AACGTTCTTCCAATAAAAAA+TGG + chr8_4:29469392-29469411 None:intergenic 25.0%
!!! ATTTTTTATTGGAAGAACGT+TGG - chr8_4:29469391-29469410 Msa1322430:intron 25.0%
! TTTGTTTGTTTAGGAAAATG+TGG - chr8_4:29470056-29470075 Msa1322430:intron 25.0%
! TAAAGTTGAAAAGGTTAATC+AGG + chr8_4:29470314-29470333 None:intergenic 25.0%
!! TGATTAACCTTTTCAACTTT+AGG - chr8_4:29470313-29470332 Msa1322430:five_prime_UTR 25.0%
! AATGATTCCTAAAGTTGAAA+AGG + chr8_4:29470323-29470342 None:intergenic 25.0%
!!! TTCAACTTTAGGAATCATTT+TGG - chr8_4:29470324-29470343 Msa1322430:five_prime_UTR 25.0%
!!! ATGATAATGACACGTTATTT+TGG - chr8_4:29470430-29470449 Msa1322430:intron 25.0%
!!! TGATAATGACACGTTATTTT+GGG - chr8_4:29470431-29470450 Msa1322430:intron 25.0%
! ATTATTCTTCTGTATACAAG+AGG - chr8_4:29470486-29470505 Msa1322430:intron 25.0%
! TTATATAACTTATTGCACCA+AGG + chr8_4:29470752-29470771 None:intergenic 25.0%
! TATATAAAATCATGGTGGTT+TGG + chr8_4:29470841-29470860 None:intergenic 25.0%
AAGAAGAAGAAGAAGAAGAA+TGG + chr8_4:29465431-29465450 None:intergenic 30.0%
CAATGTTGTTACTACTACTA+GGG + chr8_4:29465488-29465507 None:intergenic 30.0%
ACAATGTTGTTACTACTACT+AGG + chr8_4:29465489-29465508 None:intergenic 30.0%
CTAATTAAGAAAGCCAAACA+TGG - chr8_4:29465728-29465747 Msa1322430:intron 30.0%
TTATAGACACTTATGTCTTC+TGG - chr8_4:29465762-29465781 Msa1322430:intron 30.0%
TATAGACACTTATGTCTTCT+GGG - chr8_4:29465763-29465782 Msa1322430:intron 30.0%
AAGGGCTTCATGAAAATTAA+GGG + chr8_4:29465821-29465840 None:intergenic 30.0%
AAAGGGCTTCATGAAAATTA+AGG + chr8_4:29465822-29465841 None:intergenic 30.0%
TTAAGACAATGCAAAAAGTG+GGG - chr8_4:29465949-29465968 Msa1322430:intron 30.0%
CTTATGTTTCATCTACTTCT+AGG + chr8_4:29466426-29466445 None:intergenic 30.0%
TTCTAGATTGAGAACGAATA+TGG - chr8_4:29466669-29466688 Msa1322430:CDS 30.0%
GAGTCTCAAGTTCTATATTT+AGG - chr8_4:29466906-29466925 Msa1322430:intron 30.0%
! ATTAATCTGTAGTGGAGAAT+TGG + chr8_4:29466975-29466994 None:intergenic 30.0%
CTAGGCTTATATGGTTTATT+TGG + chr8_4:29467031-29467050 None:intergenic 30.0%
! GAGAGATCAGAAGTATAAAA+GGG + chr8_4:29467130-29467149 None:intergenic 30.0%
! AGAGAGATCAGAAGTATAAA+AGG + chr8_4:29467131-29467150 None:intergenic 30.0%
TTCTATTCTCCATGATCATA+AGG - chr8_4:29467153-29467172 Msa1322430:intron 30.0%
ATCTGTAAACCTTATGATCA+TGG + chr8_4:29467165-29467184 None:intergenic 30.0%
! ATAAGGTTTACAGATTTTGG+TGG - chr8_4:29467170-29467189 Msa1322430:intron 30.0%
CTCATATGTGAATTACTACA+TGG - chr8_4:29467259-29467278 Msa1322430:CDS 30.0%
TATGTGAATTACTACATGGT+TGG - chr8_4:29467263-29467282 Msa1322430:CDS 30.0%
! TTTTGTTGCAAGAAAACATG+TGG - chr8_4:29467358-29467377 Msa1322430:intron 30.0%
GATAAATTATAGTACCATGG+AGG - chr8_4:29467421-29467440 Msa1322430:intron 30.0%
! TCATAGCTTGTAGTAATGAA+TGG + chr8_4:29467475-29467494 None:intergenic 30.0%
TGATTCACTGAGAATTTGAA+TGG - chr8_4:29467574-29467593 Msa1322430:intron 30.0%
!!! ATTTTCTTTAAGACCACTCA+GGG + chr8_4:29467702-29467721 None:intergenic 30.0%
!!! AATTTTCTTTAAGACCACTC+AGG + chr8_4:29467703-29467722 None:intergenic 30.0%
! TAAAAGCTCTCTTTTTGTTC+AGG + chr8_4:29467746-29467765 None:intergenic 30.0%
GCCAAAATATAGTCATTTGA+AGG - chr8_4:29467804-29467823 Msa1322430:exon 30.0%
ACAAGCAAAGAACTAGAAAA+GGG + chr8_4:29467943-29467962 None:intergenic 30.0%
AACAAGCAAAGAACTAGAAA+AGG + chr8_4:29467944-29467963 None:intergenic 30.0%
TCTAGCAAACTATCATCTAA+AGG - chr8_4:29468071-29468090 Msa1322430:intron 30.0%
! CTACTGTGGTTTTCAATAAT+AGG - chr8_4:29468100-29468119 Msa1322430:intron 30.0%
GCATCAATCAATTATTTGAC+TGG - chr8_4:29468431-29468450 Msa1322430:five_prime_UTR 30.0%
AGAAGATAGATCTTCATCAT+AGG + chr8_4:29468538-29468557 None:intergenic 30.0%
ATTATATCACTCATCTTACC+TGG + chr8_4:29468649-29468668 None:intergenic 30.0%
CAAATTTCTTCTGCTTGAAT+TGG + chr8_4:29468785-29468804 None:intergenic 30.0%
!! AGGTGACTGATTTCTTTTAA+AGG - chr8_4:29469125-29469144 Msa1322430:intron 30.0%
!! GGTGACTGATTTCTTTTAAA+GGG - chr8_4:29469126-29469145 Msa1322430:intron 30.0%
!! ACTGATTTCTTTTAAAGGGT+CGG - chr8_4:29469130-29469149 Msa1322430:intron 30.0%
AGAGAAGTTGCACATTTAAT+GGG - chr8_4:29469171-29469190 Msa1322430:intron 30.0%
ATATGGTATTAAGCACTAAC+CGG + chr8_4:29469257-29469276 None:intergenic 30.0%
!! GCATAATAAATGGTCTTATC+AGG - chr8_4:29469495-29469514 Msa1322430:five_prime_UTR 30.0%
AGTAGAATATGTTGTTGAAC+AGG - chr8_4:29469594-29469613 Msa1322430:five_prime_UTR 30.0%
TTTGTCCATTTATCCATACT+TGG + chr8_4:29469877-29469896 None:intergenic 30.0%
AAATTGTACCATCTTTGAGT+GGG + chr8_4:29470001-29470020 None:intergenic 30.0%
AAAATTGTACCATCTTTGAG+TGG + chr8_4:29470002-29470021 None:intergenic 30.0%
CCTAAACAAACAAAGAAGTA+AGG + chr8_4:29470050-29470069 None:intergenic 30.0%
! CCTTACTTCTTTGTTTGTTT+AGG - chr8_4:29470047-29470066 Msa1322430:intron 30.0%
TATGTCGCAAATATCCAATT+TGG + chr8_4:29470400-29470419 None:intergenic 30.0%
ATGTTTACAAGTGTTCTGTT+TGG - chr8_4:29470529-29470548 Msa1322430:five_prime_UTR 30.0%
ACTACTATTAGGTTCTTTGT+TGG + chr8_4:29470596-29470615 None:intergenic 30.0%
GTTCTTCAAACACTACTATT+AGG + chr8_4:29470607-29470626 None:intergenic 30.0%
ATAGTAGTGTTTGAAGAACT+TGG - chr8_4:29470608-29470627 Msa1322430:intron 30.0%
GAATCCTTGGAAAATTTCTT+TGG - chr8_4:29470634-29470653 Msa1322430:intron 30.0%
! TTCACCAAAGAAATTTTCCA+AGG + chr8_4:29470641-29470660 None:intergenic 30.0%
TTTGTATGTAGCTTCACTTA+GGG - chr8_4:29470783-29470802 Msa1322430:five_prime_UTR 30.0%
!! GTCATTTTATTGTATCTAGC+TGG - chr8_4:29470907-29470926 Msa1322430:five_prime_UTR 30.0%
!! TCTTCTTCTTCTTTGAGACA+TGG - chr8_4:29465438-29465457 Msa1322430:three_prime_UTR 35.0%
AGAAAGTCTCTTCTCATCAA+TGG - chr8_4:29465550-29465569 Msa1322430:three_prime_UTR 35.0%
CAATTGCAAACATACTTCAG+GGG + chr8_4:29465623-29465642 None:intergenic 35.0%
GCAATTGCAAACATACTTCA+GGG + chr8_4:29465624-29465643 None:intergenic 35.0%
TGCAATTGCAAACATACTTC+AGG + chr8_4:29465625-29465644 None:intergenic 35.0%
ATTAAGAAAGCCAAACATGG+TGG - chr8_4:29465731-29465750 Msa1322430:intron 35.0%
!! ATTAAGGGTATTACATTGCC+AGG + chr8_4:29465806-29465825 None:intergenic 35.0%
! GCATTGCAGTACAATTTTGA+AGG - chr8_4:29465903-29465922 Msa1322430:intron 35.0%
ATAAGCTTCAGAACGGATAA+CGG - chr8_4:29466148-29466167 Msa1322430:intron 35.0%
!! ATTTGGTTTCTCGGTTTTGA+CGG - chr8_4:29466208-29466227 Msa1322430:intron 35.0%
! GCTTTTCACTCTTCATCATT+TGG + chr8_4:29466314-29466333 None:intergenic 35.0%
CATACCTGAGAGAGAATTAT+TGG + chr8_4:29466357-29466376 None:intergenic 35.0%
TTGAATGTGTGCGTAATTGA+AGG - chr8_4:29466387-29466406 Msa1322430:CDS 35.0%
GATGCTCCAATTGATGAATA+TGG - chr8_4:29467499-29467518 Msa1322430:intron 35.0%
AATATCGAAGAATCTGCTTC+TGG + chr8_4:29467542-29467561 None:intergenic 35.0%
CAAGAATCAACTCAACTTGA+GGG + chr8_4:29467667-29467686 None:intergenic 35.0%
!!! TTTTCTTTAAGACCACTCAG+GGG + chr8_4:29467701-29467720 None:intergenic 35.0%
TTGAGCACTTCACTATGTTT+AGG - chr8_4:29467769-29467788 Msa1322430:CDS 35.0%
! CACTTCACTATGTTTAGGTT+TGG - chr8_4:29467774-29467793 Msa1322430:CDS 35.0%
AAGCACATACAGAGAGAATA+AGG + chr8_4:29467997-29468016 None:intergenic 35.0%
TTATTCTCTCTGTATGTGCT+TGG - chr8_4:29467996-29468015 Msa1322430:intron 35.0%
AATACGGAAGTTATGCAATC+AGG + chr8_4:29468162-29468181 None:intergenic 35.0%
CAAAGGACAAGGCTTAATAT+AGG + chr8_4:29468412-29468431 None:intergenic 35.0%
ATTGATTGATGCAAAGGACA+AGG + chr8_4:29468423-29468442 None:intergenic 35.0%
ACTATCTATGGTACATAACC+AGG - chr8_4:29468628-29468647 Msa1322430:intron 35.0%
!! ACGAAAACTTTTTGAGCTGT+TGG - chr8_4:29468709-29468728 Msa1322430:intron 35.0%
CAAAGCAATAATTTCCTAGG+CGG - chr8_4:29468740-29468759 Msa1322430:intron 35.0%
GGTCAAGTACAGGAATTTAT+TGG + chr8_4:29468821-29468840 None:intergenic 35.0%
TGCTTAAAATGGTCAAGTAC+AGG + chr8_4:29468831-29468850 None:intergenic 35.0%
TGAAATGTTGAGAACTGAGA+AGG + chr8_4:29468897-29468916 None:intergenic 35.0%
TCATCAGAATCATTTCTTCG+AGG - chr8_4:29468962-29468981 Msa1322430:intron 35.0%
!! TTTGCTAACGGGCAATTTTT+AGG - chr8_4:29469037-29469056 Msa1322430:five_prime_UTR 35.0%
CAGAGAAGTTGCACATTTAA+TGG - chr8_4:29469170-29469189 Msa1322430:intron 35.0%
AATTCAATCAGTGACAAGCA+AGG + chr8_4:29469348-29469367 None:intergenic 35.0%
TCTCCCATGTTTCATAATGT+CGG + chr8_4:29469417-29469436 None:intergenic 35.0%
ACATTATGAAACATGGGAGA+CGG - chr8_4:29469417-29469436 Msa1322430:intron 35.0%
TTATTATGCGACAGATCCTT+CGG + chr8_4:29469484-29469503 None:intergenic 35.0%
AGGATCTGTCGCATAATAAA+TGG - chr8_4:29469485-29469504 Msa1322430:intron 35.0%
GAATATGTTGTTGAACAGGT+TGG - chr8_4:29469598-29469617 Msa1322430:five_prime_UTR 35.0%
TGAATTTGGTATCACCCAAT+GGG - chr8_4:29469638-29469657 Msa1322430:intron 35.0%
!!! TGTACCATTTTAGTTGTGAC+CGG + chr8_4:29469708-29469727 None:intergenic 35.0%
GTCACAACTAAAATGGTACA+AGG - chr8_4:29469708-29469727 Msa1322430:intron 35.0%
TGGATAAATGGACAAAGCAT+AGG - chr8_4:29469881-29469900 Msa1322430:intron 35.0%
GACAAAGCATAGGAAGATAT+TGG - chr8_4:29469891-29469910 Msa1322430:intron 35.0%
AAGCATAGGAAGATATTGGA+TGG - chr8_4:29469895-29469914 Msa1322430:intron 35.0%
ATATTGGATGGCTTATGCAA+AGG - chr8_4:29469907-29469926 Msa1322430:intron 35.0%
TATTGGATGGCTTATGCAAA+GGG - chr8_4:29469908-29469927 Msa1322430:intron 35.0%
TGTGGAGTAAATACTCAAGT+TGG - chr8_4:29470074-29470093 Msa1322430:intron 35.0%
GATAATATGAGGGACTAGAT+TGG + chr8_4:29470122-29470141 None:intergenic 35.0%
TGATAACAGGTCAAAACAGA+GGG + chr8_4:29470193-29470212 None:intergenic 35.0%
! TTGATAACAGGTCAAAACAG+AGG + chr8_4:29470194-29470213 None:intergenic 35.0%
! TCAGAGATGCATTTGATAAC+AGG + chr8_4:29470206-29470225 None:intergenic 35.0%
! AATATTAGTGGCATTGGATC+TGG + chr8_4:29470466-29470485 None:intergenic 35.0%
GTTTGTATGTAGCTTCACTT+AGG - chr8_4:29470782-29470801 Msa1322430:five_prime_UTR 35.0%
TTGTATGTAGCTTCACTTAG+GGG - chr8_4:29470784-29470803 Msa1322430:five_prime_UTR 35.0%
GTTCATGTGTGGTGTGAAAA+TGG - chr8_4:29465359-29465378 Msa1322430:three_prime_UTR 40.0%
AACATCAAGACCACCATGTT+TGG + chr8_4:29465744-29465763 None:intergenic 40.0%
CGCATATATAAGGTCCAATG+CGG + chr8_4:29465989-29466008 None:intergenic 40.0%
TTCCACTCAGCGCATATATA+AGG + chr8_4:29465999-29466018 None:intergenic 40.0%
!! ATCCGTTCTGAAGCTTATTC+CGG + chr8_4:29466146-29466165 None:intergenic 40.0%
! TGAAAAGCTGTTTCAGTCTC+AGG - chr8_4:29466326-29466345 Msa1322430:CDS 40.0%
! GAAAAGCTGTTTCAGTCTCA+GGG - chr8_4:29466327-29466346 Msa1322430:CDS 40.0%
TGGTCCAATAATTCTCTCTC+AGG - chr8_4:29466350-29466369 Msa1322430:CDS 40.0%
CGCACACATTCAAAAGAGAA+AGG + chr8_4:29466380-29466399 None:intergenic 40.0%
ACTGTAGCAAAGGTAAGAGA+GGG + chr8_4:29466565-29466584 None:intergenic 40.0%
ATGTACGTAGACTGTAGCAA+AGG + chr8_4:29466575-29466594 None:intergenic 40.0%
TGGTCATGCATACCTAAACT+GGG - chr8_4:29466719-29466738 Msa1322430:intron 40.0%
TGCAAATATGGCTGTTGGAT+TGG - chr8_4:29466743-29466762 Msa1322430:intron 40.0%
GCAAATATGGCTGTTGGATT+GGG - chr8_4:29466744-29466763 Msa1322430:intron 40.0%
! ATCTGTAGTGGAGAATTGGA+TGG + chr8_4:29466971-29466990 None:intergenic 40.0%
AACCATATAAGCCTAGCATG+TGG - chr8_4:29467035-29467054 Msa1322430:intron 40.0%
ATATAAGCCTAGCATGTGGA+CGG - chr8_4:29467039-29467058 Msa1322430:intron 40.0%
AGTTGCTCGTTTCATTCAGA+AGG - chr8_4:29467232-29467251 Msa1322430:intron 40.0%
GTTGCTCGTTTCATTCAGAA+GGG - chr8_4:29467233-29467252 Msa1322430:intron 40.0%
GTGAATTACTACATGGTTGG+TGG - chr8_4:29467266-29467285 Msa1322430:CDS 40.0%
ACGGACAAAGGTGAAACTTA+AGG + chr8_4:29467398-29467417 None:intergenic 40.0%
CCAAGAATCAACTCAACTTG+AGG + chr8_4:29467668-29467687 None:intergenic 40.0%
!! CCTCAAGTTGAGTTGATTCT+TGG - chr8_4:29467665-29467684 Msa1322430:CDS 40.0%
! AGCTCTCTTTTTGTTCAGGA+TGG + chr8_4:29467742-29467761 None:intergenic 40.0%
! CACTATGTTTAGGTTTGGTC+AGG - chr8_4:29467779-29467798 Msa1322430:CDS 40.0%
! TGAGCATGCTTTGGTTTCTT+CGG - chr8_4:29467852-29467871 Msa1322430:intron 40.0%
GATCCTACTGTTACACCATT+AGG - chr8_4:29467874-29467893 Msa1322430:intron 40.0%
GTTCCTAATGGTGTAACAGT+AGG + chr8_4:29467880-29467899 None:intergenic 40.0%
!! TATGTGCTTGGTGATTTTCC+AGG - chr8_4:29468008-29468027 Msa1322430:intron 40.0%
GCAATCAGGAAGGATACTTA+TGG + chr8_4:29468148-29468167 None:intergenic 40.0%
!! AAATGAGTCCTGTCGATTCT+AGG - chr8_4:29468499-29468518 Msa1322430:five_prime_UTR 40.0%
!! TGTCGATTCTAGGTTCTCAT+GGG - chr8_4:29468509-29468528 Msa1322430:intron 40.0%
CTTCTCTAGACGAAAGTTCA+AGG - chr8_4:29468553-29468572 Msa1322430:intron 40.0%
TGGTGTCTCTTGTAACATTG+AGG + chr8_4:29468605-29468624 None:intergenic 40.0%
TATGTACCATAGATAGTCGC+TGG + chr8_4:29468625-29468644 None:intergenic 40.0%
TATCTCCTAGATCTTCAGTC+AGG - chr8_4:29468672-29468691 Msa1322430:intron 40.0%
ATGTTGAGAACTGAGAAGGT+AGG + chr8_4:29468893-29468912 None:intergenic 40.0%
TCAGAATCATTTCTTCGAGG+AGG - chr8_4:29468965-29468984 Msa1322430:intron 40.0%
GCAGACTGCACATTAATGTT+GGG + chr8_4:29468998-29469017 None:intergenic 40.0%
TGCAGACTGCACATTAATGT+TGG + chr8_4:29468999-29469018 None:intergenic 40.0%
AACATTAATGTGCAGTCTGC+AGG - chr8_4:29468998-29469017 Msa1322430:intron 40.0%
!! TCTTTTAAAGGGTCGGCATT+TGG - chr8_4:29469137-29469156 Msa1322430:intron 40.0%
!! CTTTTAAAGGGTCGGCATTT+GGG - chr8_4:29469138-29469157 Msa1322430:intron 40.0%
CTGAATGCTCAAGTTCAAGT+TGG + chr8_4:29469287-29469306 None:intergenic 40.0%
TTGGCCGACATTATGAAACA+TGG - chr8_4:29469410-29469429 Msa1322430:intron 40.0%
TGGCCGACATTATGAAACAT+GGG - chr8_4:29469411-29469430 Msa1322430:intron 40.0%
CATTATGAAACATGGGAGAC+GGG - chr8_4:29469418-29469437 Msa1322430:intron 40.0%
ATTATGAAACATGGGAGACG+GGG - chr8_4:29469419-29469438 Msa1322430:intron 40.0%
! GTTGAACAGGTTGGACTAAA+AGG - chr8_4:29469607-29469626 Msa1322430:five_prime_UTR 40.0%
AAAAGGAGAGGCTGTGAATT+TGG - chr8_4:29469624-29469643 Msa1322430:intron 40.0%
GTGAATTTGGTATCACCCAA+TGG - chr8_4:29469637-29469656 Msa1322430:intron 40.0%
GAATTTGGTATCACCCAATG+GGG - chr8_4:29469639-29469658 Msa1322430:intron 40.0%
CAAGGTAAGAGCAGTTTACT+AGG - chr8_4:29469726-29469745 Msa1322430:intron 40.0%
! GAGGTTTGAAGTTTGTGGTA+AGG + chr8_4:29469786-29469805 None:intergenic 40.0%
!!! GCTTATTTTAACACGCCTGA+GGG - chr8_4:29469809-29469828 Msa1322430:intron 40.0%
AAGGGCCAAGTATGGATAAA+TGG - chr8_4:29469869-29469888 Msa1322430:intron 40.0%
TGCAATTCCTGCAACTATTC+TGG - chr8_4:29469935-29469954 Msa1322430:intron 40.0%
GCAATTCCTGCAACTATTCT+GGG - chr8_4:29469936-29469955 Msa1322430:intron 40.0%
!! ACTCAAGTTGGTCCTTGAAA+TGG - chr8_4:29470086-29470105 Msa1322430:intron 40.0%
! AAGTTGGTCCTTGAAATGGT+AGG - chr8_4:29470090-29470109 Msa1322430:intron 40.0%
GGTACTTTCCTACCATTTCA+AGG + chr8_4:29470101-29470120 None:intergenic 40.0%
TCCTTGCAAGTATCAACAGA+GGG - chr8_4:29470283-29470302 Msa1322430:intron 40.0%
GTAGTGTTTGAAGAACTTGG+CGG - chr8_4:29470611-29470630 Msa1322430:intron 40.0%
TAGTGTTTGAAGAACTTGGC+GGG - chr8_4:29470612-29470631 Msa1322430:intron 40.0%
GGTGCTTCTTGGATAGTGAA+TGG + chr8_4:29465602-29465621 None:intergenic 45.0%
GATGTTCATGAACCATCTCC+TGG - chr8_4:29465785-29465804 Msa1322430:intron 45.0%
GGTATTACATTGCCAGGAGA+TGG + chr8_4:29465800-29465819 None:intergenic 45.0%
CTTTATGCCAATCTCCGCAT+TGG - chr8_4:29465972-29465991 Msa1322430:intron 45.0%
ATAAGGTCCAATGCGGAGAT+TGG + chr8_4:29465982-29466001 None:intergenic 45.0%
GACCTTATATATGCGCTGAG+TGG - chr8_4:29465994-29466013 Msa1322430:intron 45.0%
ATATGCGCTGAGTGGAACTT+TGG - chr8_4:29466002-29466021 Msa1322430:intron 45.0%
TATGCGCTGAGTGGAACTTT+GGG - chr8_4:29466003-29466022 Msa1322430:intron 45.0%
GGTGTAGAGGAATTCCTGTT+TGG - chr8_4:29466107-29466126 Msa1322430:intron 45.0%
GGCACATACTTCAACCAAAC+AGG + chr8_4:29466124-29466143 None:intergenic 45.0%
GTTTGGTTGAAGTATGTGCC+CGG - chr8_4:29466124-29466143 Msa1322430:intron 45.0%
!! TCCGTTCTGAAGCTTATTCC+GGG + chr8_4:29466145-29466164 None:intergenic 45.0%
!! AACGGATAACGGACCTTTCA+AGG - chr8_4:29466159-29466178 Msa1322430:intron 45.0%
GACTGTAGCAAAGGTAAGAG+AGG + chr8_4:29466566-29466585 None:intergenic 45.0%
AACGAATATGGACCAGAGAG+CGG - chr8_4:29466681-29466700 Msa1322430:intron 45.0%
CTGGTCATGCATACCTAAAC+TGG - chr8_4:29466718-29466737 Msa1322430:intron 45.0%
CCATATTTGCAGCCCAGTTT+AGG + chr8_4:29466734-29466753 None:intergenic 45.0%
CCTAAACTGGGCTGCAAATA+TGG - chr8_4:29466731-29466750 Msa1322430:intron 45.0%
TTTCCTTGCACATCACCCAA+GGG + chr8_4:29466779-29466798 None:intergenic 45.0%
! TTTTCCTTGCACATCACCCA+AGG + chr8_4:29466780-29466799 None:intergenic 45.0%
AGAATGAAAGAGCTCACCAC+AGG + chr8_4:29466816-29466835 None:intergenic 45.0%
GGTGAGCTCTTTCATTCTCT+TGG - chr8_4:29466818-29466837 Msa1322430:CDS 45.0%
AGTGTGACAGCTGAAGCAAA+CGG + chr8_4:29466849-29466868 None:intergenic 45.0%
TGCTTCAGCTGTCACACTTA+AGG - chr8_4:29466851-29466870 Msa1322430:CDS 45.0%
GCTTCAGCTGTCACACTTAA+GGG - chr8_4:29466852-29466871 Msa1322430:CDS 45.0%
CTTCAGCTGTCACACTTAAG+GGG - chr8_4:29466853-29466872 Msa1322430:CDS 45.0%
TTCAGCTGTCACACTTAAGG+GGG - chr8_4:29466854-29466873 Msa1322430:CDS 45.0%
GTCCACATGCTAGGCTTATA+TGG + chr8_4:29467040-29467059 None:intergenic 45.0%
GCAAATGCTAGATCCTGAAC+TGG + chr8_4:29467212-29467231 None:intergenic 45.0%
TACCATGGAGGAACCAACTT+TGG - chr8_4:29467433-29467452 Msa1322430:intron 45.0%
ACCATTAGGAACACTTCAGC+AGG - chr8_4:29467888-29467907 Msa1322430:intron 45.0%
! ACCTGCTGAAGTGTTCCTAA+TGG + chr8_4:29467892-29467911 None:intergenic 45.0%
GTATTCTCTGCAGGAACTAC+AGG - chr8_4:29468036-29468055 Msa1322430:intron 45.0%
AGGATACTTATGGACCATGG+AGG + chr8_4:29468138-29468157 None:intergenic 45.0%
GGAAGGATACTTATGGACCA+TGG + chr8_4:29468141-29468160 None:intergenic 45.0%
CGGAAGTTATGCAATCAGGA+AGG + chr8_4:29468158-29468177 None:intergenic 45.0%
CATGAGAACCTAGAATCGAC+AGG + chr8_4:29468510-29468529 None:intergenic 45.0%
!! CTGTCGATTCTAGGTTCTCA+TGG - chr8_4:29468508-29468527 Msa1322430:intron 45.0%
AGTTCAAGGATTACAGCTGC+TGG - chr8_4:29468567-29468586 Msa1322430:intron 45.0%
TGATACAATAGACACCGCCT+AGG + chr8_4:29468757-29468776 None:intergenic 45.0%
ATTGCCCGTTAGCAAACACA+TGG + chr8_4:29469033-29469052 None:intergenic 45.0%
GCTCCAGCATGTAGATTAAC+TGG + chr8_4:29469197-29469216 None:intergenic 45.0%
! CAAGGTGTCTGACAAGCAAA+TGG + chr8_4:29469330-29469349 None:intergenic 45.0%
! ACAGGTTGGACTAAAAGGAG+AGG - chr8_4:29469612-29469631 Msa1322430:five_prime_UTR 45.0%
TCATTAGCTGAGACCCCATT+GGG + chr8_4:29469655-29469674 None:intergenic 45.0%
ATCATTAGCTGAGACCCCAT+TGG + chr8_4:29469656-29469675 None:intergenic 45.0%
ATGGGGTCTCAGCTAATGAT+TGG - chr8_4:29469656-29469675 Msa1322430:intron 45.0%
TGGGGTCTCAGCTAATGATT+GGG - chr8_4:29469657-29469676 Msa1322430:intron 45.0%
ATTCACTAGCTACTCCAAGC+CGG - chr8_4:29469686-29469705 Msa1322430:intron 45.0%
!!! CATTTTAGTTGTGACCGGCT+TGG + chr8_4:29469703-29469722 None:intergenic 45.0%
CAAGCCGGTCACAACTAAAA+TGG - chr8_4:29469701-29469720 Msa1322430:intron 45.0%
ACCACAAACTTCAAACCTCC+AGG - chr8_4:29469787-29469806 Msa1322430:intron 45.0%
GCGTGTTAAAATAAGCCTGG+AGG + chr8_4:29469805-29469824 None:intergenic 45.0%
CAGGCGTGTTAAAATAAGCC+TGG + chr8_4:29469808-29469827 None:intergenic 45.0%
!!! GGCTTATTTTAACACGCCTG+AGG - chr8_4:29469808-29469827 Msa1322430:intron 45.0%
! GCTTTGGACCTAGGAAGTAT+GGG - chr8_4:29469845-29469864 Msa1322430:intron 45.0%
! GACCTAGGAAGTATGGGTAA+GGG - chr8_4:29469851-29469870 Msa1322430:intron 45.0%
GAATGTCCCAGAATAGTTGC+AGG + chr8_4:29469945-29469964 None:intergenic 45.0%
GTCCTTGCAAGTATCAACAG+AGG - chr8_4:29470282-29470301 Msa1322430:intron 45.0%
TCCCTCTGTTGATACTTGCA+AGG + chr8_4:29470287-29470306 None:intergenic 45.0%
! TCTGTTTGGAATGATGTCGC+AGG - chr8_4:29470543-29470562 Msa1322430:five_prime_UTR 45.0%
GGTATCATGTTCCAAGGTCA+TGG - chr8_4:29470564-29470583 Msa1322430:five_prime_UTR 45.0%
TTGAGTTCACTAACGAGCTG+CGG + chr8_4:29470681-29470700 None:intergenic 45.0%
AAGTTCACTCGCGAATTCTC+TGG - chr8_4:29470705-29470724 Msa1322430:five_prime_UTR 45.0%
!!! AAATACATTTTTTTTTAAAA+GGG + chr8_4:29465839-29465858 None:intergenic 5.0%
!!! AAAATACATTTTTTTTTAAA+AGG + chr8_4:29465840-29465859 None:intergenic 5.0%
!!! GATATATATATATTTTTTTT+TGG - chr8_4:29466250-29466269 Msa1322430:intron 5.0%
!! CATACTTCAGGGGTGCTTCT+TGG + chr8_4:29465613-29465632 None:intergenic 50.0%
GCCCGGAATAAGCTTCAGAA+CGG - chr8_4:29466141-29466160 Msa1322430:intron 50.0%
TGGGTTTAGGCTGCAATGCA+AGG - chr8_4:29466270-29466289 Msa1322430:intron 50.0%
! AAGCTGTTTCAGTCTCAGGG+TGG - chr8_4:29466330-29466349 Msa1322430:CDS 50.0%
ACGAATATGGACCAGAGAGC+GGG - chr8_4:29466682-29466701 Msa1322430:intron 50.0%
TGGGCTGCAAATATGGCTGT+TGG - chr8_4:29466738-29466757 Msa1322430:intron 50.0%
! ATGGCTGTTGGATTGGGAAC+AGG - chr8_4:29466750-29466769 Msa1322430:intron 50.0%
ATTGGGAACAGGAGTCCCTT+GGG - chr8_4:29466761-29466780 Msa1322430:intron 50.0%
GTGCAAGGAAAATGATGCCC+CGG - chr8_4:29466788-29466807 Msa1322430:intron 50.0%
AAAGAGCTCACCACAGGATC+CGG + chr8_4:29466810-29466829 None:intergenic 50.0%
GTGTGACAGCTGAAGCAAAC+GGG + chr8_4:29466848-29466867 None:intergenic 50.0%
GAACTGGTCGCTGGTGAATT+GGG + chr8_4:29467196-29467215 None:intergenic 50.0%
TGAACTGGTCGCTGGTGAAT+TGG + chr8_4:29467197-29467216 None:intergenic 50.0%
AATTCACCAGCGACCAGTTC+AGG - chr8_4:29467196-29467215 Msa1322430:intron 50.0%
GCTCGTTTCATTCAGAAGGG+TGG - chr8_4:29467236-29467255 Msa1322430:intron 50.0%
! GTCCAAAGTTGGTTCCTCCA+TGG + chr8_4:29467438-29467457 None:intergenic 50.0%
ACCAACTTTGGACGATCAGC+TGG - chr8_4:29467445-29467464 Msa1322430:intron 50.0%
ACCAGCTGATCGTCCAAAGT+TGG + chr8_4:29467449-29467468 None:intergenic 50.0%
AACTTTGGACGATCAGCTGG+TGG - chr8_4:29467448-29467467 Msa1322430:intron 50.0%
GGATCATTTCAACCCCTGAG+TGG - chr8_4:29467686-29467705 Msa1322430:CDS 50.0%
CAAGCGATGTGAGCATGCTT+TGG - chr8_4:29467843-29467862 Msa1322430:intron 50.0%
CTGCAGAGAATACATGAGCC+TGG + chr8_4:29468029-29468048 None:intergenic 50.0%
CAGGCTCATGTATTCTCTGC+AGG - chr8_4:29468027-29468046 Msa1322430:intron 50.0%
TCTAAAGGCTGCTGCTACTG+TGG - chr8_4:29468086-29468105 Msa1322430:intron 50.0%
GAGACACCAGCGACTATCTA+TGG - chr8_4:29468616-29468635 Msa1322430:intron 50.0%
GATGGCCTGACTGAAGATCT+AGG + chr8_4:29468680-29468699 None:intergenic 50.0%
! GCCGTCCATGTGTTTGCTAA+CGG - chr8_4:29469025-29469044 Msa1322430:intron 50.0%
CCCGTTAGCAAACACATGGA+CGG + chr8_4:29469029-29469048 None:intergenic 50.0%
! CCGTCCATGTGTTTGCTAAC+GGG - chr8_4:29469026-29469045 Msa1322430:intron 50.0%
GGGCCAGTTAATCTACATGC+TGG - chr8_4:29469191-29469210 Msa1322430:intron 50.0%
TCAAGACCATGGAGCACAAC+TGG + chr8_4:29469454-29469473 None:intergenic 50.0%
! GCCTGGAGGTTTGAAGTTTG+TGG + chr8_4:29469791-29469810 None:intergenic 50.0%
!! GAACCATTGGCTTTGGACCT+AGG - chr8_4:29469836-29469855 Msa1322430:intron 50.0%
CTTCCTAGGTCCAAAGCCAA+TGG + chr8_4:29469842-29469861 None:intergenic 50.0%
!! GGCTTTGGACCTAGGAAGTA+TGG - chr8_4:29469844-29469863 Msa1322430:intron 50.0%
! GGACCTAGGAAGTATGGGTA+AGG - chr8_4:29469850-29469869 Msa1322430:intron 50.0%
GTATGGGTAAGGGCCAAGTA+TGG - chr8_4:29469861-29469880 Msa1322430:intron 50.0%
! AGACCTGCAAAGTGCCAACT+TGG - chr8_4:29469965-29469984 Msa1322430:five_prime_UTR 50.0%
! CAACCAAGTTGGCACTTTGC+AGG + chr8_4:29469971-29469990 None:intergenic 50.0%
! GCAAAGTGCCAACTTGGTTG+TGG - chr8_4:29469971-29469990 Msa1322430:five_prime_UTR 50.0%
TGGGTTGTCCACAACCAAGT+TGG + chr8_4:29469982-29470001 None:intergenic 50.0%
GTGGACAACCCACTCAAAGA+TGG - chr8_4:29469990-29470009 Msa1322430:five_prime_UTR 50.0%
GTCGCAGGTATCATGTTCCA+AGG - chr8_4:29470558-29470577 Msa1322430:five_prime_UTR 50.0%
!! GTTGGCTTTAGCCATGACCT+TGG + chr8_4:29470578-29470597 None:intergenic 50.0%
AAGAACTTGGCGGGAATCCT+TGG - chr8_4:29470621-29470640 Msa1322430:intron 50.0%
!! TCTGGCTTTGCCTGAAACGA+GGG - chr8_4:29470723-29470742 Msa1322430:five_prime_UTR 50.0%
CGAATATGGACCAGAGAGCG+GGG - chr8_4:29466683-29466702 Msa1322430:intron 55.0%
GATTGGGAACAGGAGTCCCT+TGG - chr8_4:29466760-29466779 Msa1322430:intron 55.0%
AGTCCCTTGGGTGATGTGCA+AGG - chr8_4:29466773-29466792 Msa1322430:intron 55.0%
AAATGATGCCCCGGATCCTG+TGG - chr8_4:29466797-29466816 Msa1322430:CDS 55.0%
AAGAGCTCACCACAGGATCC+GGG + chr8_4:29466809-29466828 None:intergenic 55.0%
CAAGACTCCGTCCACATGCT+AGG + chr8_4:29467049-29467068 None:intergenic 55.0%
CTAGCATGTGGACGGAGTCT+TGG - chr8_4:29467047-29467066 Msa1322430:intron 55.0%
ATGTGGACGGAGTCTTGGAG+TGG - chr8_4:29467052-29467071 Msa1322430:intron 55.0%
CTAGATCCTGAACTGGTCGC+TGG + chr8_4:29467205-29467224 None:intergenic 55.0%
! GGCACTATGACTTGCCTCCA+TGG - chr8_4:29468121-29468140 Msa1322430:five_prime_UTR 55.0%
GGTGGGAACTCAAACGTCAG+TGG - chr8_4:29468473-29468492 Msa1322430:five_prime_UTR 55.0%
GCTCTTCTCAGCGTGACTGT+CGG - chr8_4:29469227-29469246 Msa1322430:intron 55.0%
ACTGGTCCAGTTGTGCTCCA+TGG - chr8_4:29469445-29469464 Msa1322430:intron 55.0%
! GTGCTCCATGGTCTTGACCA+TGG - chr8_4:29469457-29469476 Msa1322430:intron 55.0%
TCGGTCCATGGTCAAGACCA+TGG + chr8_4:29469465-29469484 None:intergenic 55.0%
! TGGTCTTGACCATGGACCGA+AGG - chr8_4:29469465-29469484 Msa1322430:intron 55.0%
!! GGGCAACGAACCATTGGCTT+TGG - chr8_4:29469829-29469848 Msa1322430:intron 55.0%
GGCCCTTACCCATACTTCCT+AGG + chr8_4:29469856-29469875 None:intergenic 55.0%
!! CTCTGGCTTTGCCTGAAACG+AGG - chr8_4:29470722-29470741 Msa1322430:five_prime_UTR 55.0%
ACCAAGGCTACCCTCGTTTC+AGG + chr8_4:29470736-29470755 None:intergenic 55.0%
AGAGCTCACCACAGGATCCG+GGG + chr8_4:29466808-29466827 None:intergenic 60.0%
! AAGGGTCGGCATTTGGGACG+AGG - chr8_4:29469144-29469163 Msa1322430:intron 60.0%
CAGCGTGACTGTCGGATTGC+CGG - chr8_4:29469235-29469254 Msa1322430:five_prime_UTR 60.0%
ACATGGGAGACGGGGATCAC+TGG - chr8_4:29469427-29469446 Msa1322430:intron 60.0%
GCGACAGATCCTTCGGTCCA+TGG + chr8_4:29469477-29469496 None:intergenic 60.0%
GCCTGAGGGCAACGAACCAT+TGG - chr8_4:29469823-29469842 Msa1322430:intron 60.0%
GCCAATGGTTCGTTGCCCTC+AGG + chr8_4:29469827-29469846 None:intergenic 60.0%
GCCTGAAACGAGGGTAGCCT+TGG - chr8_4:29470732-29470751 Msa1322430:five_prime_UTR 60.0%
TGGACCAGAGAGCGGGGCAA+TGG - chr8_4:29466689-29466708 Msa1322430:intron 65.0%
GGACCAGAGAGCGGGGCAAT+GGG - chr8_4:29466690-29466709 Msa1322430:intron 65.0%
GGACGGAGTCTTGGAGTGGC+TGG - chr8_4:29467056-29467075 Msa1322430:CDS 65.0%
GCTCCCATTGCCCCGCTCTC+TGG + chr8_4:29466696-29466715 None:intergenic 70.0%
AGCGGGGCAATGGGAGCTGC+TGG - chr8_4:29466699-29466718 Msa1322430:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 29465354 29470956 29465354 ID=Msa1322430;Name=Msa1322430
chr8_4 mRNA 29465354 29470956 29465354 ID=Msa1322430-mRNA-1;Parent=Msa1322430;Name=Msa1322430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1444|1|1|1|0.94|0.94|18|265|307
chr8_4 exon 29465354 29465745 29465354 ID=Msa1322430-mRNA-1:exon:9783;Parent=Msa1322430-mRNA-1
chr8_4 exon 29466299 29466501 29466299 ID=Msa1322430-mRNA-1:exon:9782;Parent=Msa1322430-mRNA-1
chr8_4 exon 29466581 29466694 29466581 ID=Msa1322430-mRNA-1:exon:9781;Parent=Msa1322430-mRNA-1
chr8_4 exon 29466794 29466904 29466794 ID=Msa1322430-mRNA-1:exon:9780;Parent=Msa1322430-mRNA-1
chr8_4 exon 29467054 29467163 29467054 ID=Msa1322430-mRNA-1:exon:9779;Parent=Msa1322430-mRNA-1
chr8_4 exon 29467252 29467361 29467252 ID=Msa1322430-mRNA-1:exon:9778;Parent=Msa1322430-mRNA-1
chr8_4 exon 29467661 29467836 29467661 ID=Msa1322430-mRNA-1:exon:9777;Parent=Msa1322430-mRNA-1
chr8_4 exon 29468116 29468280 29468116 ID=Msa1322430-mRNA-1:exon:9776;Parent=Msa1322430-mRNA-1
chr8_4 exon 29468401 29468519 29468401 ID=Msa1322430-mRNA-1:exon:9775;Parent=Msa1322430-mRNA-1
chr8_4 exon 29468790 29468940 29468790 ID=Msa1322430-mRNA-1:exon:9774;Parent=Msa1322430-mRNA-1
chr8_4 exon 29469030 29469135 29469030 ID=Msa1322430-mRNA-1:exon:9773;Parent=Msa1322430-mRNA-1
chr8_4 exon 29469233 29469321 29469233 ID=Msa1322430-mRNA-1:exon:9772;Parent=Msa1322430-mRNA-1
chr8_4 exon 29469492 29469635 29469492 ID=Msa1322430-mRNA-1:exon:9771;Parent=Msa1322430-mRNA-1
chr8_4 exon 29469939 29470031 29469939 ID=Msa1322430-mRNA-1:exon:9770;Parent=Msa1322430-mRNA-1
chr8_4 exon 29470130 29470196 29470130 ID=Msa1322430-mRNA-1:exon:9769;Parent=Msa1322430-mRNA-1
chr8_4 exon 29470286 29470398 29470286 ID=Msa1322430-mRNA-1:exon:9768;Parent=Msa1322430-mRNA-1
chr8_4 exon 29470499 29470594 29470499 ID=Msa1322430-mRNA-1:exon:9767;Parent=Msa1322430-mRNA-1
chr8_4 exon 29470683 29470956 29470683 ID=Msa1322430-mRNA-1:exon:9766;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29470683 29470956 29470683 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29470499 29470594 29470499 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29470286 29470398 29470286 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29470130 29470196 29470130 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29469939 29470031 29469939 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29469492 29469635 29469492 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29469233 29469321 29469233 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29469030 29469135 29469030 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29468790 29468940 29468790 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29468401 29468519 29468401 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29468116 29468280 29468116 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 five_prime_UTR 29467810 29467836 29467810 ID=Msa1322430-mRNA-1:five_prime_utr;Parent=Msa1322430-mRNA-1
chr8_4 CDS 29467661 29467809 29467661 ID=Msa1322430-mRNA-1:cds;Parent=Msa1322430-mRNA-1
chr8_4 CDS 29467252 29467361 29467252 ID=Msa1322430-mRNA-1:cds;Parent=Msa1322430-mRNA-1
chr8_4 CDS 29467054 29467163 29467054 ID=Msa1322430-mRNA-1:cds;Parent=Msa1322430-mRNA-1
chr8_4 CDS 29466794 29466904 29466794 ID=Msa1322430-mRNA-1:cds;Parent=Msa1322430-mRNA-1
chr8_4 CDS 29466581 29466694 29466581 ID=Msa1322430-mRNA-1:cds;Parent=Msa1322430-mRNA-1
chr8_4 CDS 29466299 29466501 29466299 ID=Msa1322430-mRNA-1:cds;Parent=Msa1322430-mRNA-1
chr8_4 CDS 29465619 29465745 29465619 ID=Msa1322430-mRNA-1:cds;Parent=Msa1322430-mRNA-1
chr8_4 three_prime_UTR 29465354 29465618 29465354 ID=Msa1322430-mRNA-1:three_prime_utr;Parent=Msa1322430-mRNA-1
Gene Sequence

>Msa1322430

ATGAGTCCTGTCGATTCTAGGTTCTCATGGGAGACCTATGATGAAGATCTATCTTCTCTAGACGAAAGTTCAAGGATTACAGCTGCTGGACTCTTAGAACACCTCAATGTTACAAGAGACACCAGCGACTATCTATGGTACATAACCAGTGTTGACATAAGTTCATCAGAATCATTTCTTCGAGGAGGACACAAACCCAACATTAATGTGCAGTCTGCAGGACATGCCGTCCATGTGTTTGCTAACGGGCAATTTTTAGGGTCGGCATTTGGGACGAGGAAACAGAGAAGTTGCACATTTAATGGGCCAGTTAATCTACATGCTGGAGCAAATAAAATTGCTCTTCTCAGCGTGACTGTCGGATTGCCGAACGTTGGCCGACATTATGAAACATGGGAGACGGGGATCACTGGTCCAGTTGTGCTCCATGGTCTTGACCATGGACCGAAGGATCTGTCGCATAATAAATGGTCTTATCAGGTTGGACTAAAAGGAGAGGCTGTGAATTTGGTATCACCCAATGGGGTCTCAGCTAATGATTGGGTTCAAGATTCACTAGCTACTCCAAGCCGGTCACAACTAAAATGGTACAAGGCTTATTTTAACACGCCTGAGGGCAACGAACCATTGGCTTTGGACCTAGGAAGTATGGGTAAGGGCCAAGTATGGATAAATGGACAAAGCATAGGAAGATATTGGATGGCTTATGCAAAGGGTGACTGCAATTCCTGCAACTATTCTGGGACATTCAGACCTGCAAAGTGCCAACTTGGTTGTGGACAACCCACTCAAAGATGGTATCATGTTCCAAGGTCATGGCTAAAGCCAACAAAGAACCTAATAGTAGTGTTTGAAGAACTTGGCGGGAATCCTTGGAAAATTTCTTTGGTGAAGAGAACAGTACATACTGCCGCAGCTCGTTAG
Protein sequence

>Msa1322430

MSPVDSRFSWETYDEDLSSLDESSRITAAGLLEHLNVTRDTSDYLWYITSVDISSSESFLRGGHKPNINVQSAGHAVHVFANGQFLGSAFGTRKQRSCTFNGPVNLHAGANKIALLSVTVGLPNVGRHYETWETGITGPVVLHGLDHGPKDLSHNKWSYQVGLKGEAVNLVSPNGVSANDWVQDSLATPSRSQLKWYKAYFNTPEGNEPLALDLGSMGKGQVWINGQSIGRYWMAYAKGDCNSCNYSGTFRPAKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRTVHTAAAR*