Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191700 | KEH17492.1 | 54.938 | 162 | 54 | 3 | 40 | 184 | 201 | 360 | 3.18e-39 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623950 | Msa1191700 | 0.953008 | 7.036553e-111 | -8.615850e-47 |
| Msa1191700 | Msa1404200 | 0.950060 | 3.582562e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191700 | MtrunA17_Chr2g0307131 | 54.658 | 161 | 54 | 3 | 40 | 183 | 197 | 355 | 1.08e-42 | 145 |
| Msa1191700 | MtrunA17_Chr2g0307141 | 54.321 | 162 | 55 | 3 | 40 | 184 | 201 | 360 | 1.27e-42 | 145 |
| Msa1191700 | MtrunA17_Chr4g0033391 | 56.164 | 146 | 48 | 3 | 51 | 182 | 176 | 319 | 5.64e-42 | 143 |
| Msa1191700 | MtrunA17_Chr4g0033291 | 56.757 | 148 | 48 | 3 | 51 | 184 | 184 | 329 | 1.54e-41 | 142 |
| Msa1191700 | MtrunA17_Chr6g0468491 | 51.235 | 162 | 60 | 3 | 40 | 184 | 155 | 314 | 2.12e-40 | 139 |
| Msa1191700 | MtrunA17_Chr4g0033281 | 54.483 | 145 | 51 | 3 | 51 | 182 | 182 | 324 | 7.11e-37 | 130 |
| Msa1191700 | MtrunA17_Chr4g0054581 | 49.677 | 155 | 55 | 3 | 51 | 184 | 227 | 379 | 7.86e-33 | 120 |
| Msa1191700 | MtrunA17_Chr7g0225901 | 50.000 | 124 | 45 | 3 | 51 | 157 | 117 | 240 | 3.25e-29 | 108 |
| Msa1191700 | MtrunA17_Chr4g0054621 | 45.139 | 144 | 65 | 4 | 52 | 184 | 202 | 342 | 1.56e-26 | 103 |
| Msa1191700 | MtrunA17_Chr5g0400621 | 45.333 | 150 | 63 | 4 | 51 | 183 | 186 | 333 | 8.32e-24 | 95.9 |
| Msa1191700 | MtrunA17_Chr5g0400641 | 44.531 | 128 | 46 | 4 | 51 | 157 | 27 | 150 | 1.82e-21 | 85.9 |
| Msa1191700 | MtrunA17_Chr6g0468461 | 45.045 | 111 | 56 | 2 | 51 | 157 | 202 | 311 | 4.29e-19 | 83.2 |
| Msa1191700 | MtrunA17_Chr4g0049331 | 31.818 | 154 | 76 | 5 | 51 | 182 | 164 | 310 | 1.60e-12 | 64.3 |
| Msa1191700 | MtrunA17_Chr4g0002831 | 35.537 | 121 | 69 | 4 | 63 | 176 | 83 | 201 | 1.75e-12 | 63.2 |
| Msa1191700 | MtrunA17_Chr4g0054561 | 33.803 | 142 | 71 | 5 | 51 | 174 | 184 | 320 | 7.20e-12 | 62.8 |
| Msa1191700 | MtrunA17_Chr4g0002781 | 30.921 | 152 | 79 | 4 | 51 | 180 | 203 | 350 | 1.44e-11 | 62.0 |
| Msa1191700 | MtrunA17_Chr2g0280161 | 29.333 | 150 | 86 | 3 | 51 | 182 | 206 | 353 | 1.82e-11 | 61.6 |
| Msa1191700 | MtrunA17_Chr4g0002801 | 31.250 | 192 | 105 | 8 | 1 | 180 | 155 | 331 | 2.13e-11 | 61.2 |
| Msa1191700 | MtrunA17_Chr4g0002851 | 32.773 | 119 | 69 | 3 | 63 | 177 | 83 | 194 | 2.71e-11 | 59.7 |
| Msa1191700 | MtrunA17_Chr5g0400661 | 33.333 | 159 | 74 | 6 | 51 | 179 | 178 | 334 | 3.33e-11 | 60.8 |
| Msa1191700 | MtrunA17_Chr2g0333641 | 30.986 | 142 | 75 | 5 | 51 | 174 | 166 | 302 | 7.67e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATATGTTAGATAAAT+AGG | 0.149320 | 8_1:+36442485 | Msa1191700:intron |
| AAAAGCAATGTCTTATCTTT+TGG | 0.203496 | 8_1:+36442807 | Msa1191700:CDS |
| CATGTGGAAGCAAGGGTGTT+AGG | 0.291400 | 8_1:+36442690 | Msa1191700:CDS |
| ATCCCTTGCACTTCTGAGAT+TGG | 0.311626 | 8_1:-36442734 | None:intergenic |
| GAGAACATTGAAGGTGTTAT+TGG | 0.322532 | 8_1:+36442657 | Msa1191700:CDS |
| TAGGGAAAGATATGTTGATT+TGG | 0.374148 | 8_1:+36442709 | Msa1191700:CDS |
| GAAAGAACTTGGAGAGCCTT+TGG | 0.390032 | 8_1:+36442540 | Msa1191700:CDS |
| ACCCTTGCTTCCACATGAAA+TGG | 0.403044 | 8_1:-36442684 | None:intergenic |
| GAATGAACTTGAAAAGCGTT+TGG | 0.404274 | 8_1:+36440585 | Msa1191700:CDS |
| TTATGCAATTCCACATGAAA+TGG | 0.413126 | 8_1:-36440724 | None:intergenic |
| TCATTTGATGAGAGCATTGA+AGG | 0.427338 | 8_1:+36440688 | Msa1191700:CDS |
| ATGTGGAAGCAAGGGTGTTA+GGG | 0.446382 | 8_1:+36442691 | Msa1191700:CDS |
| TCATTTGATGAGAACATTGA+AGG | 0.468182 | 8_1:+36442648 | Msa1191700:CDS |
| ATCGCTACAGAGGTCTGGTT+TGG | 0.482022 | 8_1:-36440653 | None:intergenic |
| CACCATTTCATGTGGAAGCA+AGG | 0.482800 | 8_1:+36442682 | Msa1191700:CDS |
| ATCAAATACATGAAAGAACT+TGG | 0.484281 | 8_1:+36442529 | Msa1191700:CDS |
| GAGAGCATTGAAGGTGTTGT+TGG | 0.490602 | 8_1:+36440697 | Msa1191700:CDS |
| AATCCCTACCTGAGTAATGA+TGG | 0.502166 | 8_1:-36442838 | None:intergenic |
| TCGTCATCGCTACAGAGGTC+TGG | 0.520023 | 8_1:-36440658 | None:intergenic |
| TGTTCTTCTAAAACTTCCAA+AGG | 0.524143 | 8_1:-36442556 | None:intergenic |
| AGGCAACAACTTGAGCATAA+AGG | 0.528487 | 8_1:+36443126 | Msa1191700:CDS |
| CCAAGCCTCTGCAGCAATGA+CGG | 0.537916 | 8_1:+36442618 | Msa1191700:intron |
| ACCATTTCATGTGGAAGCAA+GGG | 0.554925 | 8_1:+36442683 | Msa1191700:CDS |
| TATTGGTTCACCATTTCATG+TGG | 0.603150 | 8_1:+36442674 | Msa1191700:CDS |
| ACTTCAATGTTGTCATGCGT+AGG | 0.604852 | 8_1:-36443162 | None:intergenic |
| AGACATTACCATCATTACTC+AGG | 0.612640 | 8_1:+36442830 | Msa1191700:CDS |
| GATCCAATCTCAGAAGTGCA+AGG | 0.613626 | 8_1:+36442731 | Msa1191700:CDS |
| AGGAATCGTCATCGCTACAG+AGG | 0.620384 | 8_1:-36440663 | None:intergenic |
| ATCCAATCTCAGAAGTGCAA+GGG | 0.627063 | 8_1:+36442732 | Msa1191700:CDS |
| AATGCTCTCATCAAATGACG+AGG | 0.687926 | 8_1:-36440683 | None:intergenic |
| AATGTTCTCATCAAATGACG+AGG | 0.702664 | 8_1:-36442643 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAGTATTTTTTATTCT+AGG | + | chr8_1:36441137-36441156 | Msa1191700:intron | 10.0% |
| !!! | AATCTTATTTATTTTATAGT+TGG | + | chr8_1:36441258-36441277 | Msa1191700:intron | 10.0% |
| !!! | ATCTTATTTATTTTATAGTT+GGG | + | chr8_1:36441259-36441278 | Msa1191700:intron | 10.0% |
| !!! | CAAATATTTTCTTTATTTAA+TGG | + | chr8_1:36441419-36441438 | Msa1191700:intron | 10.0% |
| !!! | AAATTTTGTAAGTTTTAAAT+AGG | + | chr8_1:36441713-36441732 | Msa1191700:intron | 10.0% |
| !! | AACTTAAAAAAAAAACTTAA+AGG | - | chr8_1:36441740-36441759 | None:intergenic | 10.0% |
| !! | TTTCAAATATGTTATTAAAA+GGG | + | chr8_1:36441758-36441777 | Msa1191700:intron | 10.0% |
| !!! | AATCTTTTTTTAGTTATTAT+TGG | + | chr8_1:36442914-36442933 | Msa1191700:intron | 10.0% |
| !!! | TAAAATAAATATTTTGTTCT+AGG | + | chr8_1:36442980-36442999 | Msa1191700:intron | 10.0% |
| !! | AAGATTGATATTAAATATAA+TGG | - | chr8_1:36443085-36443104 | None:intergenic | 10.0% |
| !! | AATATATCTAGCAAATATAA+TGG | - | chr8_1:36441170-36441189 | None:intergenic | 15.0% |
| !!! | ATTTTGTTGTCTTTTTATTT+TGG | + | chr8_1:36441191-36441210 | Msa1191700:intron | 15.0% |
| !!! | TTTTGTTGTCTTTTTATTTT+GGG | + | chr8_1:36441192-36441211 | Msa1191700:intron | 15.0% |
| !!! | GATATTTTTGTCAAATTTAA+TGG | - | chr8_1:36441651-36441670 | None:intergenic | 15.0% |
| !! | GTTTCAAATATGTTATTAAA+AGG | + | chr8_1:36441757-36441776 | Msa1191700:intron | 15.0% |
| !!! | ATTGTTTTGTAGTAAAAAAA+AGG | - | chr8_1:36442066-36442085 | None:intergenic | 15.0% |
| !!! | ATGAGCATAATTTTTTTATA+AGG | + | chr8_1:36442204-36442223 | Msa1191700:intron | 15.0% |
| !!! | TTCATTTTGTTTGTATTTTT+CGG | + | chr8_1:36442261-36442280 | Msa1191700:intron | 15.0% |
| !! | TGAAAATATGTTAGATAAAT+AGG | + | chr8_1:36442485-36442504 | Msa1191700:intron | 15.0% |
| !!! | TTTTTTTTTGAAGTAGTTAT+TGG | + | chr8_1:36442940-36442959 | Msa1191700:intron | 15.0% |
| !! | AATATATCAAGCAAAAATAA+TGG | - | chr8_1:36443013-36443032 | None:intergenic | 15.0% |
| !!! | ATTTTGTTGTCTTTTTATTT+TGG | + | chr8_1:36441191-36441210 | Msa1191700:intron | 15.0% |
| !!! | AATCTTAATTATTTTAGAGT+TGG | + | chr8_1:36443099-36443118 | Msa1191700:intron | 15.0% |
| !!! | ATCTTAATTATTTTAGAGTT+GGG | + | chr8_1:36443100-36443119 | Msa1191700:intron | 15.0% |
| !!! | AGGGATTTTTTTTTTTTTTG+TGG | + | chr8_1:36440961-36440980 | Msa1191700:intron | 20.0% |
| !!! | GATTTTTTTTTTTTTTGTGG+TGG | + | chr8_1:36440964-36440983 | Msa1191700:intron | 20.0% |
| !!! | TTTGTTGTCTTTTTATTTTG+GGG | + | chr8_1:36441193-36441212 | Msa1191700:intron | 20.0% |
| !!! | AATATTTTGTCGAGAAAAAA+AGG | - | chr8_1:36441619-36441638 | None:intergenic | 20.0% |
| !! | ATGTTATTAAAAGGGTAATA+AGG | + | chr8_1:36441766-36441785 | Msa1191700:intron | 20.0% |
| !! | AAAATATAAAAAGATACGAG+GGG | - | chr8_1:36442233-36442252 | None:intergenic | 20.0% |
| !! | GAAAATATAAAAAGATACGA+GGG | - | chr8_1:36442234-36442253 | None:intergenic | 20.0% |
| !! | AGAAAATATAAAAAGATACG+AGG | - | chr8_1:36442235-36442254 | None:intergenic | 20.0% |
| !!! | TCATTTTGTTTGTATTTTTC+GGG | + | chr8_1:36442262-36442281 | Msa1191700:intron | 20.0% |
| !!! | GGGATTTTTAGTTAAAATTA+TGG | + | chr8_1:36442752-36442771 | Msa1191700:CDS | 20.0% |
| !! | TAGGGAAATATATGTTGATT+TGG | + | chr8_1:36440751-36440770 | Msa1191700:intron | 25.0% |
| !! | GGTACTTCTAGTTAAAATTA+TGG | + | chr8_1:36440794-36440813 | Msa1191700:intron | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | - | chr8_1:36441009-36441028 | None:intergenic | 25.0% |
| !!! | TTTATTTTATAGTTGGGTGA+AGG | + | chr8_1:36441265-36441284 | Msa1191700:intron | 25.0% |
| ! | GTATATAAAGAGAGAGAAAA+AGG | - | chr8_1:36441871-36441890 | None:intergenic | 25.0% |
| ! | CAAGATAGTAACAAAATTTG+CGG | + | chr8_1:36441957-36441976 | Msa1191700:intron | 25.0% |
| !!! | TTCCTTCCATGTTTTTTTAA+TGG | + | chr8_1:36442033-36442052 | Msa1191700:intron | 25.0% |
| ! | TGTAGTAAAAAAAAGGATCA+AGG | - | chr8_1:36442059-36442078 | None:intergenic | 25.0% |
| !! | TAAGATCACTACACAAATTT+TGG | - | chr8_1:36442160-36442179 | None:intergenic | 25.0% |
| ! | AATGAATTGAGAGTCTAATT+TGG | + | chr8_1:36442294-36442313 | Msa1191700:intron | 25.0% |
| ! | TTCCTTTGACATATAATTTC+CGG | - | chr8_1:36442341-36442360 | None:intergenic | 25.0% |
| ! | GTAAAAATATGTTAGCTAGA+TGG | - | chr8_1:36442434-36442453 | None:intergenic | 25.0% |
| !!! | GATAAATAGGTTTTATGTAG+TGG | + | chr8_1:36442498-36442517 | Msa1191700:intron | 25.0% |
| ! | ATCAAATACATGAAAGAACT+TGG | + | chr8_1:36442529-36442548 | Msa1191700:CDS | 25.0% |
| !! | AAAAGCAATGTCTTATCTTT+TGG | + | chr8_1:36442807-36442826 | Msa1191700:CDS | 25.0% |
| AACAAAAACAGAGTTACGTA+TGG | + | chr8_1:36440620-36440639 | Msa1191700:CDS | 30.0% | |
| ACAAAAACAGAGTTACGTAT+GGG | + | chr8_1:36440621-36440640 | Msa1191700:CDS | 30.0% | |
| TTATGCAATTCCACATGAAA+TGG | - | chr8_1:36440727-36440746 | None:intergenic | 30.0% | |
| !! | GTTGATTTGGATCTAATGAT+AGG | + | chr8_1:36440764-36440783 | Msa1191700:intron | 30.0% |
| ! | AAACGCAATGTCTTATCTTT+TGG | + | chr8_1:36440848-36440867 | Msa1191700:intron | 30.0% |
| GACAACAAATAGTTACAATG+CGG | - | chr8_1:36440883-36440902 | None:intergenic | 30.0% | |
| ! | AAACGCAATGTCTTATCTTT+TGG | + | chr8_1:36440848-36440867 | Msa1191700:intron | 30.0% |
| ATTACCATCATTACTCACTA+GGG | + | chr8_1:36440942-36440961 | Msa1191700:intron | 30.0% | |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr8_1:36440968-36440987 | Msa1191700:intron | 30.0% |
| ATAAAAATATGCAAGGTTCG+GGG | - | chr8_1:36441002-36441021 | None:intergenic | 30.0% | |
| CATAAAAATATGCAAGGTTC+GGG | - | chr8_1:36441003-36441022 | None:intergenic | 30.0% | |
| GCATAAAAATATGCAAGGTT+CGG | - | chr8_1:36441004-36441023 | None:intergenic | 30.0% | |
| ! | TATTTGTGACTTTTGTTCAG+CGG | - | chr8_1:36441405-36441424 | None:intergenic | 30.0% |
| ! | AACGTTCACGTTTGATTTAT+TGG | + | chr8_1:36441520-36441539 | Msa1191700:intron | 30.0% |
| ! | ACGTTCACGTTTGATTTATT+GGG | + | chr8_1:36441521-36441540 | Msa1191700:intron | 30.0% |
| AAAAAGGCCAACAAATTGAT+GGG | - | chr8_1:36441603-36441622 | None:intergenic | 30.0% | |
| AAAAAAGGCCAACAAATTGA+TGG | - | chr8_1:36441604-36441623 | None:intergenic | 30.0% | |
| TCAAGGCCATTAAAAAAACA+TGG | - | chr8_1:36442042-36442061 | None:intergenic | 30.0% | |
| TACTACGTACTATATTAGCA+TGG | - | chr8_1:36442089-36442108 | None:intergenic | 30.0% | |
| !!! | GTACGTAGTACTTTTTCAAA+TGG | + | chr8_1:36442099-36442118 | Msa1191700:intron | 30.0% |
| AATATGTTAGCTAGATGGAT+AGG | - | chr8_1:36442429-36442448 | None:intergenic | 30.0% | |
| !! | TGTTCTTCTAAAACTTCCAA+AGG | - | chr8_1:36442559-36442578 | None:intergenic | 30.0% |
| TCATTTGATGAGAACATTGA+AGG | + | chr8_1:36442648-36442667 | Msa1191700:CDS | 30.0% | |
| ! | TAGGGAAAGATATGTTGATT+TGG | + | chr8_1:36442709-36442728 | Msa1191700:CDS | 30.0% |
| !!! | ATTATTTTAGAGTTGGGTGA+AGG | + | chr8_1:36443106-36443125 | Msa1191700:intron | 30.0% |
| !! | GAATGAACTTGAAAAGCGTT+TGG | + | chr8_1:36440585-36440604 | Msa1191700:CDS | 35.0% |
| !! | TCATTTGATGAGAGCATTGA+AGG | + | chr8_1:36440688-36440707 | Msa1191700:CDS | 35.0% |
| TGTGGAATTGCATAAGTGTT+AGG | + | chr8_1:36440732-36440751 | Msa1191700:intron | 35.0% | |
| GTGGAATTGCATAAGTGTTA+GGG | + | chr8_1:36440733-36440752 | Msa1191700:intron | 35.0% | |
| ! | GATCTAATGATAGGAGTACA+AGG | + | chr8_1:36440773-36440792 | Msa1191700:intron | 35.0% |
| ACAAATAGTTACAATGCGGA+TGG | - | chr8_1:36440879-36440898 | None:intergenic | 35.0% | |
| ! | AATGATGGTAATGTCAAGGA+TGG | - | chr8_1:36440934-36440953 | None:intergenic | 35.0% |
| ! | GAGTAATGATGGTAATGTCA+AGG | - | chr8_1:36440938-36440957 | None:intergenic | 35.0% |
| CATTACCATCATTACTCACT+AGG | + | chr8_1:36440941-36440960 | Msa1191700:intron | 35.0% | |
| AAATCCCTAGTGAGTAATGA+TGG | - | chr8_1:36440949-36440968 | None:intergenic | 35.0% | |
| !! | TGATACAACTTGCTGGAATT+AGG | - | chr8_1:36441495-36441514 | None:intergenic | 35.0% |
| TACACATGCTAATGAACAAG+AGG | + | chr8_1:36441888-36441907 | Msa1191700:intron | 35.0% | |
| GGCCATTAAAAAAACATGGA+AGG | - | chr8_1:36442038-36442057 | None:intergenic | 35.0% | |
| !! | TTGAGAGTCTAATTTGGTGT+TGG | + | chr8_1:36442300-36442319 | Msa1191700:intron | 35.0% |
| TGCCGGAAATTATATGTCAA+AGG | + | chr8_1:36442336-36442355 | Msa1191700:intron | 35.0% | |
| ACAAAAATAGAGTCACGTAG+AGG | + | chr8_1:36442581-36442600 | Msa1191700:intron | 35.0% | |
| AATGTTCTCATCAAATGACG+AGG | - | chr8_1:36442646-36442665 | None:intergenic | 35.0% | |
| !! | GAGAACATTGAAGGTGTTAT+TGG | + | chr8_1:36442657-36442676 | Msa1191700:CDS | 35.0% |
| !! | TATTGGTTCACCATTTCATG+TGG | + | chr8_1:36442674-36442693 | Msa1191700:CDS | 35.0% |
| AGACATTACCATCATTACTC+AGG | + | chr8_1:36442830-36442849 | Msa1191700:CDS | 35.0% | |
| ATTACCATCATTACTCAGGT+AGG | + | chr8_1:36442834-36442853 | Msa1191700:intron | 35.0% | |
| TTACCATCATTACTCAGGTA+GGG | + | chr8_1:36442835-36442854 | Msa1191700:intron | 35.0% | |
| !!! | CAGGTAGGGATTTCTTTTTT+TGG | + | chr8_1:36442849-36442868 | Msa1191700:intron | 35.0% |
| !!! | CTTTTTTTGGTTTCGAACTC+AGG | + | chr8_1:36442862-36442881 | Msa1191700:intron | 35.0% |
| AATGCTCTCATCAAATGACG+AGG | - | chr8_1:36440686-36440705 | None:intergenic | 40.0% | |
| !! | TGTTGGTTCACCATTTCATG+TGG | + | chr8_1:36440714-36440733 | Msa1191700:intron | 40.0% |
| ACTTCAATGCTATCATGCGT+AGG | - | chr8_1:36441324-36441343 | None:intergenic | 40.0% | |
| TTCTCTCTGATACAACTTGC+TGG | - | chr8_1:36441502-36441521 | None:intergenic | 40.0% | |
| GCATGTTCCCATCAATTTGT+TGG | + | chr8_1:36441593-36441612 | Msa1191700:intron | 40.0% | |
| AAAATCGCTCACCAATCTCA+CGG | + | chr8_1:36441987-36442006 | Msa1191700:intron | 40.0% | |
| ACCATTTCATGTGGAAGCAA+GGG | + | chr8_1:36442683-36442702 | Msa1191700:CDS | 40.0% | |
| ! | ATCCAATCTCAGAAGTGCAA+GGG | + | chr8_1:36442732-36442751 | Msa1191700:CDS | 40.0% |
| AATCCCTACCTGAGTAATGA+TGG | - | chr8_1:36442841-36442860 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTTCGAACTCAGGT+AGG | + | chr8_1:36442866-36442885 | Msa1191700:intron | 40.0% |
| ! | TTTGGTTTCGAACTCAGGTA+GGG | + | chr8_1:36442867-36442886 | Msa1191700:intron | 40.0% |
| AGGCAACAACTTGAGCATAA+AGG | + | chr8_1:36443126-36443145 | Msa1191700:CDS | 40.0% | |
| ACTTCAATGTTGTCATGCGT+AGG | - | chr8_1:36443165-36443184 | None:intergenic | 40.0% | |
| !! | GAGAGCATTGAAGGTGTTGT+TGG | + | chr8_1:36440697-36440716 | Msa1191700:CDS | 45.0% |
| !! | GTCTAATTTGGTGTTGGTGC+AGG | + | chr8_1:36442306-36442325 | Msa1191700:intron | 45.0% |
| GAAAGAACTTGGAGAGCCTT+TGG | + | chr8_1:36442540-36442559 | Msa1191700:CDS | 45.0% | |
| CACCATTTCATGTGGAAGCA+AGG | + | chr8_1:36442682-36442701 | Msa1191700:CDS | 45.0% | |
| ACCCTTGCTTCCACATGAAA+TGG | - | chr8_1:36442687-36442706 | None:intergenic | 45.0% | |
| !! | ATGTGGAAGCAAGGGTGTTA+GGG | + | chr8_1:36442691-36442710 | Msa1191700:CDS | 45.0% |
| ! | GATCCAATCTCAGAAGTGCA+AGG | + | chr8_1:36442731-36442750 | Msa1191700:CDS | 45.0% |
| !! | ATCCCTTGCACTTCTGAGAT+TGG | - | chr8_1:36442737-36442756 | None:intergenic | 45.0% |
| !! | AAGATTAATATTAAATATAA+TGG | - | chr8_1:36441244-36441263 | None:intergenic | 5.0% |
| !!! | AAATATTTTCTTTATTTAAT+GGG | + | chr8_1:36441420-36441439 | Msa1191700:intron | 5.0% |
| !!! | AAGTTTTTTAAATTTTAAAT+AGG | - | chr8_1:36441793-36441812 | None:intergenic | 5.0% |
| !! | TTAAAATTTAAAAAACTTAA+AGG | + | chr8_1:36441795-36441814 | Msa1191700:intron | 5.0% |
| ATCGCTACAGAGGTCTGGTT+TGG | - | chr8_1:36440656-36440675 | None:intergenic | 50.0% | |
| AGGAATCGTCATCGCTACAG+AGG | - | chr8_1:36440666-36440685 | None:intergenic | 50.0% | |
| ! | TGAGCTTGGCTCAGTTGGTA+TGG | - | chr8_1:36441032-36441051 | None:intergenic | 50.0% |
| TGAGTAAGTCCTCGTGAGCT+TGG | - | chr8_1:36441046-36441065 | None:intergenic | 50.0% | |
| AAGCTCACGAGGACTTACTC+AGG | + | chr8_1:36441045-36441064 | Msa1191700:intron | 50.0% | |
| TCACGAGGACTTACTCAGGT+AGG | + | chr8_1:36441049-36441068 | Msa1191700:intron | 50.0% | |
| CACGAGGACTTACTCAGGTA+GGG | + | chr8_1:36441050-36441069 | Msa1191700:intron | 50.0% | |
| !! | GTGAGAGAGTACCGTGAGAT+TGG | - | chr8_1:36442001-36442020 | None:intergenic | 50.0% |
| TTGGTGCAGGTTCAACTTGC+CGG | + | chr8_1:36442319-36442338 | Msa1191700:intron | 50.0% | |
| !! | CATGTGGAAGCAAGGGTGTT+AGG | + | chr8_1:36442690-36442709 | Msa1191700:CDS | 50.0% |
| TCGTCATCGCTACAGAGGTC+TGG | - | chr8_1:36440661-36440680 | None:intergenic | 55.0% | |
| AAGGTTCGGGGTTCGAACTC+CGG | - | chr8_1:36440990-36441009 | None:intergenic | 55.0% | |
| CCAAGCCTCTGCAGCAATGA+CGG | + | chr8_1:36442618-36442637 | Msa1191700:intron | 55.0% | |
| AGGAACCGTCATTGCTGCAG+AGG | - | chr8_1:36442626-36442645 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTGGCTCAGT+TGG | - | chr8_1:36441037-36441056 | None:intergenic | 60.0% | |
| CCAACTGAGCCAAGCTCACG+AGG | + | chr8_1:36441034-36441053 | Msa1191700:intron | 60.0% | |
| CCGTCATTGCTGCAGAGGCT+TGG | - | chr8_1:36442621-36442640 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 36440583 | 36443217 | 36440583 | ID=Msa1191700;Name=Msa1191700 |
| chr8_1 | mRNA | 36440583 | 36443217 | 36440583 | ID=Msa1191700-mRNA-1;Parent=Msa1191700;Name=Msa1191700-mRNA-1;_AED=0.24;_eAED=0.25;_QI=0|0|0|1|0|0|5|19|184 |
| chr8_1 | exon | 36440583 | 36440732 | 36440583 | ID=Msa1191700-mRNA-1:exon:12002;Parent=Msa1191700-mRNA-1 |
| chr8_1 | exon | 36442499 | 36442596 | 36442499 | ID=Msa1191700-mRNA-1:exon:12003;Parent=Msa1191700-mRNA-1 |
| chr8_1 | exon | 36442632 | 36442851 | 36442632 | ID=Msa1191700-mRNA-1:exon:12004;Parent=Msa1191700-mRNA-1 |
| chr8_1 | exon | 36442956 | 36442961 | 36442956 | ID=Msa1191700-mRNA-1:exon:12005;Parent=Msa1191700-mRNA-1 |
| chr8_1 | exon | 36443118 | 36443217 | 36443118 | ID=Msa1191700-mRNA-1:exon:12006;Parent=Msa1191700-mRNA-1 |
| chr8_1 | CDS | 36440583 | 36440732 | 36440583 | ID=Msa1191700-mRNA-1:cds;Parent=Msa1191700-mRNA-1 |
| chr8_1 | CDS | 36442499 | 36442596 | 36442499 | ID=Msa1191700-mRNA-1:cds;Parent=Msa1191700-mRNA-1 |
| chr8_1 | CDS | 36442632 | 36442851 | 36442632 | ID=Msa1191700-mRNA-1:cds;Parent=Msa1191700-mRNA-1 |
| chr8_1 | CDS | 36442956 | 36442961 | 36442956 | ID=Msa1191700-mRNA-1:cds;Parent=Msa1191700-mRNA-1 |
| chr8_1 | CDS | 36443118 | 36443198 | 36443118 | ID=Msa1191700-mRNA-1:cds;Parent=Msa1191700-mRNA-1 |
| chr8_1 | three_prime_UTR | 36443199 | 36443217 | 36443199 | ID=Msa1191700-mRNA-1:three_prime_utr;Parent=Msa1191700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
