Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404200 | KEH17492.1 | 55.000 | 160 | 55 | 2 | 40 | 182 | 201 | 360 | 4.89e-41 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404200 | A0A072TJ79 | 55.000 | 160 | 55 | 2 | 40 | 182 | 201 | 360 | 2.33e-41 | 152 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623950 | Msa1404200 | 0.922832 | 5.881406e-89 | -8.615850e-47 |
| Msa0392490 | Msa1404200 | 0.804968 | 1.674680e-49 | -8.615850e-47 |
| Msa1191700 | Msa1404200 | 0.950060 | 3.582562e-108 | -8.615850e-47 |
| Msa0487630 | Msa1404200 | 0.807743 | 4.354641e-50 | -8.615850e-47 |
| Msa0591790 | Msa1404200 | 0.813855 | 2.072031e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404200 | MtrunA17_Chr2g0307131 | 54.717 | 159 | 55 | 2 | 40 | 181 | 197 | 355 | 1.47e-44 | 150 |
| Msa1404200 | MtrunA17_Chr2g0307141 | 54.375 | 160 | 56 | 2 | 40 | 182 | 201 | 360 | 2.02e-44 | 150 |
| Msa1404200 | MtrunA17_Chr4g0033391 | 56.250 | 144 | 49 | 2 | 51 | 180 | 176 | 319 | 1.06e-43 | 147 |
| Msa1404200 | MtrunA17_Chr4g0033291 | 56.849 | 146 | 49 | 2 | 51 | 182 | 184 | 329 | 2.45e-43 | 147 |
| Msa1404200 | MtrunA17_Chr6g0468491 | 51.250 | 160 | 61 | 2 | 40 | 182 | 155 | 314 | 2.92e-42 | 143 |
| Msa1404200 | MtrunA17_Chr4g0033281 | 54.545 | 143 | 52 | 2 | 51 | 180 | 182 | 324 | 9.89e-39 | 135 |
| Msa1404200 | MtrunA17_Chr4g0054581 | 50.327 | 153 | 55 | 2 | 51 | 182 | 227 | 379 | 1.24e-34 | 125 |
| Msa1404200 | MtrunA17_Chr7g0225901 | 49.194 | 124 | 46 | 3 | 51 | 157 | 117 | 240 | 4.34e-29 | 108 |
| Msa1404200 | MtrunA17_Chr4g0054621 | 45.775 | 142 | 65 | 3 | 52 | 182 | 202 | 342 | 1.66e-28 | 108 |
| Msa1404200 | MtrunA17_Chr5g0400621 | 45.946 | 148 | 63 | 3 | 51 | 181 | 186 | 333 | 1.10e-25 | 100 |
| Msa1404200 | MtrunA17_Chr5g0400641 | 44.030 | 134 | 50 | 4 | 51 | 163 | 27 | 156 | 2.17e-22 | 88.2 |
| Msa1404200 | MtrunA17_Chr6g0468461 | 41.803 | 122 | 66 | 2 | 40 | 157 | 191 | 311 | 4.44e-19 | 83.2 |
| Msa1404200 | MtrunA17_Chr4g0002831 | 36.134 | 119 | 69 | 3 | 63 | 174 | 83 | 201 | 2.48e-14 | 68.2 |
| Msa1404200 | MtrunA17_Chr4g0049331 | 32.237 | 152 | 76 | 4 | 51 | 180 | 164 | 310 | 4.43e-14 | 68.9 |
| Msa1404200 | MtrunA17_Chr4g0054561 | 34.286 | 140 | 71 | 4 | 51 | 172 | 184 | 320 | 1.39e-13 | 67.4 |
| Msa1404200 | MtrunA17_Chr4g0002781 | 31.333 | 150 | 79 | 3 | 51 | 178 | 203 | 350 | 2.09e-13 | 67.0 |
| Msa1404200 | MtrunA17_Chr4g0002851 | 33.333 | 117 | 69 | 2 | 63 | 175 | 83 | 194 | 2.94e-13 | 65.1 |
| Msa1404200 | MtrunA17_Chr4g0002801 | 31.579 | 190 | 105 | 7 | 1 | 178 | 155 | 331 | 3.78e-13 | 66.2 |
| Msa1404200 | MtrunA17_Chr2g0280161 | 28.302 | 159 | 96 | 2 | 40 | 180 | 195 | 353 | 1.01e-12 | 65.1 |
| Msa1404200 | MtrunA17_Chr2g0333641 | 31.429 | 140 | 75 | 4 | 51 | 172 | 166 | 302 | 1.52e-12 | 64.3 |
| Msa1404200 | MtrunA17_Chr2g0333541 | 37.063 | 143 | 71 | 4 | 51 | 174 | 123 | 265 | 2.58e-12 | 63.5 |
| Msa1404200 | MtrunA17_Chr7g0249811 | 32.824 | 131 | 80 | 2 | 51 | 173 | 194 | 324 | 4.14e-12 | 63.5 |
| Msa1404200 | MtrunA17_Chr7g0233441 | 31.667 | 120 | 75 | 3 | 63 | 175 | 75 | 194 | 5.23e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATATGTTAGATAAAT+AGG | 0.149320 | tig0023048:+37875 | Msa1404200:intron |
| AAAAGCAATGTCTTATCTTT+TGG | 0.203496 | tig0023048:+38197 | Msa1404200:CDS |
| GAGAACATTGAAGGTATTAT+TGG | 0.253567 | tig0023048:+38047 | Msa1404200:CDS |
| CATGTGGAAGCAAGGGTGTT+AGG | 0.291400 | tig0023048:+38080 | Msa1404200:CDS |
| ATCCCTTGCACTTCTGAGAT+TGG | 0.311626 | tig0023048:-38124 | Msa1404200:intergenic |
| TAGGGAAAGATATGTTGATT+TGG | 0.374148 | tig0023048:+38099 | Msa1404200:CDS |
| GAAAGAACTTGGAGAGCCTT+TGG | 0.390032 | tig0023048:+37930 | Msa1404200:CDS |
| ACCCTTGCTTCCACATGAAA+TGG | 0.403044 | tig0023048:-38074 | Msa1404200:intergenic |
| GAATGAACTTGAAAAGCGTT+TGG | 0.404274 | tig0023048:+35977 | Msa1404200:CDS |
| TTATGCAATTCCACATGAAA+TGG | 0.413126 | tig0023048:-36116 | Msa1404200:intergenic |
| TCATTTGATGAGAGCATTGA+AGG | 0.427338 | tig0023048:+36080 | Msa1404200:CDS |
| ATGTGGAAGCAAGGGTGTTA+GGG | 0.446382 | tig0023048:+38081 | Msa1404200:CDS |
| TCATTTGATGAGAACATTGA+AGG | 0.469099 | tig0023048:+38038 | Msa1404200:CDS |
| ATCGCTACAGAGGTCTGGTT+TGG | 0.482022 | tig0023048:-36045 | Msa1404200:intergenic |
| CACCATTTCATGTGGAAGCA+AGG | 0.482800 | tig0023048:+38072 | Msa1404200:CDS |
| ATCAAATACATGAAAGAACT+TGG | 0.484281 | tig0023048:+37919 | Msa1404200:CDS |
| GAGAGCATTGAAGGTGTTGT+TGG | 0.490602 | tig0023048:+36089 | Msa1404200:CDS |
| AATCCCTACCTGAGTAATGA+TGG | 0.502166 | tig0023048:-38228 | Msa1404200:intergenic |
| TCGTCATCGCTACAGAGGTC+TGG | 0.520023 | tig0023048:-36050 | Msa1404200:intergenic |
| TGTTCTTCTAAAACTTCCAA+AGG | 0.524143 | tig0023048:-37946 | Msa1404200:intergenic |
| AGGCAACAACTTGAGCATAA+AGG | 0.528487 | tig0023048:+38542 | Msa1404200:CDS |
| CCAAACCTCTGCAGCAATGA+CGG | 0.528577 | tig0023048:+38008 | Msa1404200:intron |
| ACCATTTCATGTGGAAGCAA+GGG | 0.554925 | tig0023048:+38073 | Msa1404200:CDS |
| TATTGGTTCACCATTTCATG+TGG | 0.594573 | tig0023048:+38064 | Msa1404200:CDS |
| ACTTCAATGTTGTCATGCGT+AGG | 0.604852 | tig0023048:-38578 | Msa1404200:intergenic |
| AGACATTACCATCATTACTC+AGG | 0.612640 | tig0023048:+38220 | Msa1404200:CDS |
| GATCCAATCTCAGAAGTGCA+AGG | 0.613626 | tig0023048:+38121 | Msa1404200:CDS |
| AGGAATCGTCATCGCTACAG+AGG | 0.620384 | tig0023048:-36055 | Msa1404200:intergenic |
| ATCCAATCTCAGAAGTGCAA+GGG | 0.627063 | tig0023048:+38122 | Msa1404200:CDS |
| AATGCTCTCATCAAATGACG+AGG | 0.687926 | tig0023048:-36075 | Msa1404190:intergenic |
| AATGTTCTCATCAAATGACG+AGG | 0.702664 | tig0023048:-38033 | Msa1404190:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAGTATTTTTTATTCT+AGG | + | tig0023048:36527-36546 | Msa1404200:intron | 10.0% |
| !!! | AATCTTATTTATTTTATAGT+TGG | + | tig0023048:36648-36667 | Msa1404200:intron | 10.0% |
| !!! | ATCTTATTTATTTTATAGTT+GGG | + | tig0023048:36649-36668 | Msa1404200:intron | 10.0% |
| !!! | CAAATATTTTCTTTATTTAA+TGG | + | tig0023048:36809-36828 | Msa1404200:intron | 10.0% |
| !!! | AAATTTTGTAAGTTTTAAAT+AGG | + | tig0023048:37103-37122 | Msa1404200:intron | 10.0% |
| !! | ACTTAAAAAAAAAAACTTAA+AGG | - | tig0023048:37130-37149 | Msa1404200:intergenic | 10.0% |
| !! | TTTCAAATATGTTATTAAAA+GGG | + | tig0023048:37149-37168 | Msa1404200:intron | 10.0% |
| !!! | AATCTTTTTTTAGTTATTAT+TGG | + | tig0023048:38329-38348 | Msa1404200:intron | 10.0% |
| !!! | TAAAATAAATATTTTGTTCT+AGG | + | tig0023048:38396-38415 | Msa1404200:intron | 10.0% |
| !! | AAGATTGATATTAAATATAA+TGG | - | tig0023048:38501-38520 | Msa1404200:intergenic | 10.0% |
| !! | AATATATCTAGCAAATATAA+TGG | - | tig0023048:36560-36579 | Msa1404200:intergenic | 15.0% |
| !!! | ATTTTGTTGTCTTTTTATTT+TGG | + | tig0023048:36581-36600 | Msa1404200:intron | 15.0% |
| !!! | TTTTGTTGTCTTTTTATTTT+GGG | + | tig0023048:36582-36601 | Msa1404200:intron | 15.0% |
| !!! | GATATTTTTGTCAAATTTAA+TGG | - | tig0023048:37041-37060 | Msa1404200:intergenic | 15.0% |
| !! | GTTTCAAATATGTTATTAAA+AGG | + | tig0023048:37148-37167 | Msa1404200:intron | 15.0% |
| !!! | ATTGTTTTGTAGTAAAAAAA+AGG | - | tig0023048:37456-37475 | Msa1404200:intergenic | 15.0% |
| !!! | ATGAGCATAATTTTTTTATA+AGG | + | tig0023048:37594-37613 | Msa1404200:intron | 15.0% |
| !!! | TTCATTTTGTTTGTATTTTT+CGG | + | tig0023048:37651-37670 | Msa1404200:intron | 15.0% |
| !! | TGAAAATATGTTAGATAAAT+AGG | + | tig0023048:37875-37894 | Msa1404200:intron | 15.0% |
| !!! | TTTTTTTTTGAAGTAGTTAT+TGG | + | tig0023048:38356-38375 | Msa1404200:intron | 15.0% |
| !! | AATATATCAAGCAAAAATAA+TGG | - | tig0023048:38429-38448 | Msa1404200:intergenic | 15.0% |
| !!! | ATTTTGTTGTCTTTTTATTT+TGG | + | tig0023048:36581-36600 | Msa1404200:intron | 15.0% |
| !!! | AATCTTAATTATTTTAGAGT+TGG | + | tig0023048:38515-38534 | Msa1404200:intron | 15.0% |
| !!! | ATCTTAATTATTTTAGAGTT+GGG | + | tig0023048:38516-38535 | Msa1404200:intron | 15.0% |
| !!! | TTTGTTGTCTTTTTATTTTG+GGG | + | tig0023048:36583-36602 | Msa1404200:intron | 20.0% |
| !!! | AATATTTTGTCGAGAAAAAA+AGG | - | tig0023048:37009-37028 | Msa1404200:intergenic | 20.0% |
| !! | ATGTTATTAAAAGGGTAATA+AGG | + | tig0023048:37157-37176 | Msa1404200:intron | 20.0% |
| !! | AAAATATAAAAAGATACGAG+GGG | - | tig0023048:37623-37642 | Msa1404200:intergenic | 20.0% |
| !! | GAAAATATAAAAAGATACGA+GGG | - | tig0023048:37624-37643 | Msa1404200:intergenic | 20.0% |
| !! | AGAAAATATAAAAAGATACG+AGG | - | tig0023048:37625-37644 | Msa1404200:intergenic | 20.0% |
| !!! | TCATTTTGTTTGTATTTTTC+GGG | + | tig0023048:37652-37671 | Msa1404200:intron | 20.0% |
| !!! | GGGATTTTTAGTTAAAATTA+TGG | + | tig0023048:38142-38161 | Msa1404200:CDS | 20.0% |
| !! | TAGGGAAATATATGTTGATT+TGG | + | tig0023048:36143-36162 | Msa1404200:intron | 25.0% |
| !! | GGTACTTCTAGTTAAAATTA+TGG | + | tig0023048:36186-36205 | Msa1404200:intron | 25.0% |
| !!! | CTAGGGATTTTTTTTTTTTG+TGG | + | tig0023048:36351-36370 | Msa1404200:intron | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | - | tig0023048:36399-36418 | Msa1404200:intergenic | 25.0% |
| !!! | TTTATTTTATAGTTGGGTGA+AGG | + | tig0023048:36655-36674 | Msa1404200:intron | 25.0% |
| ! | GTATATAAAGAGAGAGAAAA+AGG | - | tig0023048:37261-37280 | Msa1404200:intergenic | 25.0% |
| ! | CAAGATAGTAACAAAATTTG+CGG | + | tig0023048:37347-37366 | Msa1404200:intron | 25.0% |
| !!! | TTCCTTCCATGTTTTTTTAA+TGG | + | tig0023048:37423-37442 | Msa1404200:intron | 25.0% |
| ! | TGTAGTAAAAAAAAGGATCA+AGG | - | tig0023048:37449-37468 | Msa1404200:intergenic | 25.0% |
| !! | TAAGATCACTACACAAATTT+TGG | - | tig0023048:37550-37569 | Msa1404200:intergenic | 25.0% |
| ! | AATGAATTGAGAGTCTAATT+TGG | + | tig0023048:37684-37703 | Msa1404200:intron | 25.0% |
| ! | TTCCTTTGACATATAATTTC+CGG | - | tig0023048:37731-37750 | Msa1404200:intergenic | 25.0% |
| ! | GTAAAAATATGTTAGCTAGA+TGG | - | tig0023048:37824-37843 | Msa1404200:intergenic | 25.0% |
| !!! | GATAAATAGGTTTTATGTAG+TGG | + | tig0023048:37888-37907 | Msa1404200:intron | 25.0% |
| ! | ATCAAATACATGAAAGAACT+TGG | + | tig0023048:37919-37938 | Msa1404200:CDS | 25.0% |
| !! | AAAAGCAATGTCTTATCTTT+TGG | + | tig0023048:38197-38216 | Msa1404200:CDS | 25.0% |
| AACAAAAACAGAGTTACGTA+TGG | + | tig0023048:36012-36031 | Msa1404200:CDS | 30.0% | |
| ACAAAAACAGAGTTACGTAT+GGG | + | tig0023048:36013-36032 | Msa1404200:CDS | 30.0% | |
| TTATGCAATTCCACATGAAA+TGG | - | tig0023048:36119-36138 | Msa1404200:intergenic | 30.0% | |
| !! | GTTGATTTGGATCTAATGAT+AGG | + | tig0023048:36156-36175 | Msa1404200:intron | 30.0% |
| ! | AAACGCAATGTCTTATCTTT+TGG | + | tig0023048:36240-36259 | Msa1404200:intron | 30.0% |
| GACAACAAATAGTTACAATG+CGG | - | tig0023048:36275-36294 | Msa1404200:intergenic | 30.0% | |
| ! | AAACGCAATGTCTTATCTTT+TGG | + | tig0023048:36240-36259 | Msa1404200:intron | 30.0% |
| ATTACCATCATTACTCACTA+GGG | + | tig0023048:36334-36353 | Msa1404200:intron | 30.0% | |
| !!! | GGGATTTTTTTTTTTTGTGG+TGG | + | tig0023048:36354-36373 | Msa1404200:intron | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | tig0023048:36358-36377 | Msa1404200:intron | 30.0% |
| ATAAAAATATGCAAGGTTCG+GGG | - | tig0023048:36392-36411 | Msa1404200:intergenic | 30.0% | |
| CATAAAAATATGCAAGGTTC+GGG | - | tig0023048:36393-36412 | Msa1404200:intergenic | 30.0% | |
| GCATAAAAATATGCAAGGTT+CGG | - | tig0023048:36394-36413 | Msa1404200:intergenic | 30.0% | |
| ! | TATTTGTGACTTTTGTTCAG+CGG | - | tig0023048:36795-36814 | Msa1404200:intergenic | 30.0% |
| ! | AACGTTCACGTTTGATTTAT+TGG | + | tig0023048:36910-36929 | Msa1404200:intron | 30.0% |
| ! | ACGTTCACGTTTGATTTATT+GGG | + | tig0023048:36911-36930 | Msa1404200:intron | 30.0% |
| AAAAAGGCCAACAAATTGAT+GGG | - | tig0023048:36993-37012 | Msa1404200:intergenic | 30.0% | |
| AAAAAAGGCCAACAAATTGA+TGG | - | tig0023048:36994-37013 | Msa1404200:intergenic | 30.0% | |
| TCAAGGCCATTAAAAAAACA+TGG | - | tig0023048:37432-37451 | Msa1404200:intergenic | 30.0% | |
| TACTACGTACTATATTAGCA+TGG | - | tig0023048:37479-37498 | Msa1404200:intergenic | 30.0% | |
| !!! | GTACGTAGTACTTTTTCAAA+TGG | + | tig0023048:37489-37508 | Msa1404200:intron | 30.0% |
| AATATGTTAGCTAGATGGAT+AGG | - | tig0023048:37819-37838 | Msa1404200:intergenic | 30.0% | |
| !! | TGTTCTTCTAAAACTTCCAA+AGG | - | tig0023048:37949-37968 | Msa1404200:intergenic | 30.0% |
| TCATTTGATGAGAACATTGA+AGG | + | tig0023048:38038-38057 | Msa1404200:CDS | 30.0% | |
| !! | GAGAACATTGAAGGTATTAT+TGG | + | tig0023048:38047-38066 | Msa1404200:CDS | 30.0% |
| ! | TAGGGAAAGATATGTTGATT+TGG | + | tig0023048:38099-38118 | Msa1404200:CDS | 30.0% |
| !!! | ATTATTTTAGAGTTGGGTGA+AGG | + | tig0023048:38522-38541 | Msa1404200:intron | 30.0% |
| !! | GAATGAACTTGAAAAGCGTT+TGG | + | tig0023048:35977-35996 | Msa1404200:CDS | 35.0% |
| !! | TCATTTGATGAGAGCATTGA+AGG | + | tig0023048:36080-36099 | Msa1404200:CDS | 35.0% |
| TGTGGAATTGCATAAGTGTT+AGG | + | tig0023048:36124-36143 | Msa1404200:intron | 35.0% | |
| GTGGAATTGCATAAGTGTTA+GGG | + | tig0023048:36125-36144 | Msa1404200:intron | 35.0% | |
| ! | GATCTAATGATAGGAGTACA+AGG | + | tig0023048:36165-36184 | Msa1404200:intron | 35.0% |
| ACAAATAGTTACAATGCGGA+TGG | - | tig0023048:36271-36290 | Msa1404200:intergenic | 35.0% | |
| ! | AATGATGGTAATGTCAAGGA+TGG | - | tig0023048:36326-36345 | Msa1404200:intergenic | 35.0% |
| ! | GAGTAATGATGGTAATGTCA+AGG | - | tig0023048:36330-36349 | Msa1404200:intergenic | 35.0% |
| CATTACCATCATTACTCACT+AGG | + | tig0023048:36333-36352 | Msa1404200:intron | 35.0% | |
| AAATCCCTAGTGAGTAATGA+TGG | - | tig0023048:36341-36360 | Msa1404200:intergenic | 35.0% | |
| ACTTCAATGCTATCATGTGT+AGG | - | tig0023048:36714-36733 | Msa1404200:intergenic | 35.0% | |
| !! | TGATACAACTTGCTGGAATT+AGG | - | tig0023048:36885-36904 | Msa1404200:intergenic | 35.0% |
| TACACATGCTAATGAACAAG+AGG | + | tig0023048:37278-37297 | Msa1404200:intron | 35.0% | |
| GGCCATTAAAAAAACATGGA+AGG | - | tig0023048:37428-37447 | Msa1404200:intergenic | 35.0% | |
| !! | TTGAGAGTCTAATTTGGTGT+TGG | + | tig0023048:37690-37709 | Msa1404200:intron | 35.0% |
| TGCCGGAAATTATATGTCAA+AGG | + | tig0023048:37726-37745 | Msa1404200:intron | 35.0% | |
| ACAAAAATAGAGTCACGTAG+AGG | + | tig0023048:37971-37990 | Msa1404200:intron | 35.0% | |
| AATGTTCTCATCAAATGACG+AGG | - | tig0023048:38036-38055 | Msa1404200:intergenic | 35.0% | |
| !! | TATTGGTTCACCATTTCATG+TGG | + | tig0023048:38064-38083 | Msa1404200:CDS | 35.0% |
| AGACATTACCATCATTACTC+AGG | + | tig0023048:38220-38239 | Msa1404200:CDS | 35.0% | |
| ATTACCATCATTACTCAGGT+AGG | + | tig0023048:38224-38243 | Msa1404200:intron | 35.0% | |
| TTACCATCATTACTCAGGTA+GGG | + | tig0023048:38225-38244 | Msa1404200:intron | 35.0% | |
| !!! | CAGGTAGGGATTTCTTTTTT+TGG | + | tig0023048:38239-38258 | Msa1404200:intron | 35.0% |
| !! | TTTTTGGTCAAGTAGACTAG+TGG | + | tig0023048:38255-38274 | Msa1404200:intron | 35.0% |
| ! | TTTTGGTCAAGTAGACTAGT+GGG | + | tig0023048:38256-38275 | Msa1404200:intron | 35.0% |
| AATGCTCTCATCAAATGACG+AGG | - | tig0023048:36078-36097 | Msa1404200:intergenic | 40.0% | |
| !! | TGTTGGTTCACCATTTCATG+TGG | + | tig0023048:36106-36125 | Msa1404200:intron | 40.0% |
| TTCTCTCTGATACAACTTGC+TGG | - | tig0023048:36892-36911 | Msa1404200:intergenic | 40.0% | |
| GCATGTTCCCATCAATTTGT+TGG | + | tig0023048:36983-37002 | Msa1404200:intron | 40.0% | |
| AAAATCGCTCACCAATCTCA+CGG | + | tig0023048:37377-37396 | Msa1404200:intron | 40.0% | |
| ACCATTTCATGTGGAAGCAA+GGG | + | tig0023048:38073-38092 | Msa1404200:CDS | 40.0% | |
| ! | ATCCAATCTCAGAAGTGCAA+GGG | + | tig0023048:38122-38141 | Msa1404200:CDS | 40.0% |
| AATCCCTACCTGAGTAATGA+TGG | - | tig0023048:38231-38250 | Msa1404200:intergenic | 40.0% | |
| TTTGGTCAAGTAGACTAGTG+GGG | + | tig0023048:38257-38276 | Msa1404200:intron | 40.0% | |
| AGGCAACAACTTGAGCATAA+AGG | + | tig0023048:38542-38561 | Msa1404200:CDS | 40.0% | |
| ACTTCAATGTTGTCATGCGT+AGG | - | tig0023048:38581-38600 | Msa1404200:intergenic | 40.0% | |
| !! | GAGAGCATTGAAGGTGTTGT+TGG | + | tig0023048:36089-36108 | Msa1404200:CDS | 45.0% |
| !! | GTCTAATTTGGTGTTGGTGC+AGG | + | tig0023048:37696-37715 | Msa1404200:intron | 45.0% |
| GAAAGAACTTGGAGAGCCTT+TGG | + | tig0023048:37930-37949 | Msa1404200:CDS | 45.0% | |
| ! | ATTGCTGCAGAGGTTTGGTT+TGG | - | tig0023048:38006-38025 | Msa1404200:intergenic | 45.0% |
| CACCATTTCATGTGGAAGCA+AGG | + | tig0023048:38072-38091 | Msa1404200:CDS | 45.0% | |
| ACCCTTGCTTCCACATGAAA+TGG | - | tig0023048:38077-38096 | Msa1404200:intergenic | 45.0% | |
| !! | ATGTGGAAGCAAGGGTGTTA+GGG | + | tig0023048:38081-38100 | Msa1404200:CDS | 45.0% |
| ! | GATCCAATCTCAGAAGTGCA+AGG | + | tig0023048:38121-38140 | Msa1404200:CDS | 45.0% |
| !! | ATCCCTTGCACTTCTGAGAT+TGG | - | tig0023048:38127-38146 | Msa1404200:intergenic | 45.0% |
| !! | AAGATTAATATTAAATATAA+TGG | - | tig0023048:36634-36653 | Msa1404200:intergenic | 5.0% |
| !!! | AAATATTTTCTTTATTTAAT+GGG | + | tig0023048:36810-36829 | Msa1404200:intron | 5.0% |
| !!! | AAGTTTTTTAAATTTTAAAT+AGG | - | tig0023048:37184-37203 | Msa1404200:intergenic | 5.0% |
| !! | TTAAAATTTAAAAAACTTAA+AGG | + | tig0023048:37186-37205 | Msa1404200:intron | 5.0% |
| ATCGCTACAGAGGTCTGGTT+TGG | - | tig0023048:36048-36067 | Msa1404200:intergenic | 50.0% | |
| AGGAATCGTCATCGCTACAG+AGG | - | tig0023048:36058-36077 | Msa1404200:intergenic | 50.0% | |
| ! | TGAGCTTGGCTCAGTTGGTA+TGG | - | tig0023048:36422-36441 | Msa1404200:intergenic | 50.0% |
| TGAGTAAGTCCTCGTGAGCT+TGG | - | tig0023048:36436-36455 | Msa1404200:intergenic | 50.0% | |
| AAGCTCACGAGGACTTACTC+AGG | + | tig0023048:36435-36454 | Msa1404200:intron | 50.0% | |
| TCACGAGGACTTACTCAGGT+AGG | + | tig0023048:36439-36458 | Msa1404200:intron | 50.0% | |
| CACGAGGACTTACTCAGGTA+GGG | + | tig0023048:36440-36459 | Msa1404200:intron | 50.0% | |
| !! | GTGAGAGAGTACCGTGAGAT+TGG | - | tig0023048:37391-37410 | Msa1404200:intergenic | 50.0% |
| TTGGTGCAGGTTCAACTTGC+CGG | + | tig0023048:37709-37728 | Msa1404200:intron | 50.0% | |
| CCAAACCTCTGCAGCAATGA+CGG | + | tig0023048:38008-38027 | Msa1404200:intron | 50.0% | |
| !! | CATGTGGAAGCAAGGGTGTT+AGG | + | tig0023048:38080-38099 | Msa1404200:CDS | 50.0% |
| TCCGAGTTCGAACTCAGGTA+GGG | + | tig0023048:38282-38301 | Msa1404200:intron | 50.0% | |
| TCCCTACCTGAGTTCGAACT+CGG | - | tig0023048:38286-38305 | Msa1404200:intergenic | 50.0% | |
| TCGTCATCGCTACAGAGGTC+TGG | - | tig0023048:36053-36072 | Msa1404200:intergenic | 55.0% | |
| AAGGTTCGGGGTTCGAACTC+CGG | - | tig0023048:36380-36399 | Msa1404200:intergenic | 55.0% | |
| CCGTCATTGCTGCAGAGGTT+TGG | - | tig0023048:38011-38030 | Msa1404200:intergenic | 55.0% | |
| AGGAACCGTCATTGCTGCAG+AGG | - | tig0023048:38016-38035 | Msa1404200:intergenic | 55.0% | |
| GTCCGAGTTCGAACTCAGGT+AGG | + | tig0023048:38281-38300 | Msa1404200:intron | 55.0% | |
| CCTCGTGAGCTTGGCTCAGT+TGG | - | tig0023048:36427-36446 | Msa1404200:intergenic | 60.0% | |
| CCAACTGAGCCAAGCTCACG+AGG | + | tig0023048:36424-36443 | Msa1404200:intron | 60.0% | |
| GGGTGTCCGAGTTCGAACTC+AGG | + | tig0023048:38277-38296 | Msa1404200:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023048 | gene | 35975 | 38633 | 35975 | ID=Msa1404200;Name=Msa1404200 |
| tig0023048 | mRNA | 35975 | 38633 | 35975 | ID=Msa1404200-mRNA-1;Parent=Msa1404200;Name=Msa1404200-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0.25|4|19|182 |
| tig0023048 | exon | 35975 | 36124 | 35975 | ID=Msa1404200-mRNA-1:exon:19677;Parent=Msa1404200-mRNA-1 |
| tig0023048 | exon | 37889 | 37986 | 37889 | ID=Msa1404200-mRNA-1:exon:19678;Parent=Msa1404200-mRNA-1 |
| tig0023048 | exon | 38022 | 38241 | 38022 | ID=Msa1404200-mRNA-1:exon:19679;Parent=Msa1404200-mRNA-1 |
| tig0023048 | exon | 38534 | 38633 | 38534 | ID=Msa1404200-mRNA-1:exon:19680;Parent=Msa1404200-mRNA-1 |
| tig0023048 | CDS | 35975 | 36124 | 35975 | ID=Msa1404200-mRNA-1:cds;Parent=Msa1404200-mRNA-1 |
| tig0023048 | CDS | 37889 | 37986 | 37889 | ID=Msa1404200-mRNA-1:cds;Parent=Msa1404200-mRNA-1 |
| tig0023048 | CDS | 38022 | 38241 | 38022 | ID=Msa1404200-mRNA-1:cds;Parent=Msa1404200-mRNA-1 |
| tig0023048 | CDS | 38534 | 38614 | 38534 | ID=Msa1404200-mRNA-1:cds;Parent=Msa1404200-mRNA-1 |
| tig0023048 | three_prime_UTR | 38615 | 38633 | 38615 | ID=Msa1404200-mRNA-1:three_prime_utr;Parent=Msa1404200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
