Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193090 | AET03213.1 | 85.285 | 333 | 33 | 2 | 1 | 332 | 1 | 318 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193090 | sp|Q8L5A7|SOT15_ARATH | 49.231 | 325 | 161 | 2 | 11 | 332 | 33 | 356 | 1.27e-119 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1193090 | Msa1251040 | 0.936051 | 3.218239e-97 | -8.615850e-47 |
| Msa1193090 | Msa1291620 | 0.933240 | 2.537119e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193090 | MtrunA17_Chr8g0366181 | 84.084 | 333 | 31 | 2 | 1 | 332 | 1 | 312 | 0.0 | 558 |
| Msa1193090 | MtrunA17_Chr3g0091901 | 78.443 | 334 | 70 | 1 | 1 | 332 | 1 | 334 | 0.0 | 551 |
| Msa1193090 | MtrunA17_Chr8g0366191 | 76.276 | 333 | 78 | 1 | 1 | 332 | 1 | 333 | 0.0 | 539 |
| Msa1193090 | MtrunA17_Chr3g0096081 | 71.386 | 332 | 93 | 1 | 3 | 332 | 5 | 336 | 0.0 | 508 |
| Msa1193090 | MtrunA17_Chr3g0081701 | 50.943 | 318 | 155 | 1 | 16 | 332 | 20 | 337 | 6.10e-121 | 351 |
| Msa1193090 | MtrunA17_Chr7g0215701 | 48.598 | 321 | 161 | 2 | 16 | 332 | 12 | 332 | 1.09e-116 | 340 |
| Msa1193090 | MtrunA17_Chr3g0094771 | 71.364 | 220 | 62 | 1 | 113 | 332 | 2 | 220 | 4.27e-113 | 327 |
| Msa1193090 | MtrunA17_Chr7g0215691 | 47.188 | 320 | 162 | 3 | 16 | 332 | 18 | 333 | 2.15e-112 | 329 |
| Msa1193090 | MtrunA17_Chr8g0366241 | 80.319 | 188 | 37 | 0 | 145 | 332 | 22 | 209 | 9.96e-111 | 320 |
| Msa1193090 | MtrunA17_Chr8g0353591 | 48.562 | 313 | 154 | 5 | 24 | 332 | 15 | 324 | 3.64e-108 | 318 |
| Msa1193090 | MtrunA17_Chr8g0351331 | 44.681 | 329 | 176 | 3 | 10 | 332 | 1 | 329 | 7.69e-107 | 315 |
| Msa1193090 | MtrunA17_Chr8g0353731 | 48.012 | 327 | 154 | 5 | 4 | 326 | 21 | 335 | 5.31e-105 | 311 |
| Msa1193090 | MtrunA17_Chr8g0353721 | 43.544 | 333 | 174 | 4 | 4 | 332 | 21 | 343 | 1.01e-103 | 308 |
| Msa1193090 | MtrunA17_Chr8g0354381 | 49.421 | 259 | 127 | 3 | 78 | 332 | 2 | 260 | 9.54e-92 | 274 |
| Msa1193090 | MtrunA17_Chr8g0353921 | 47.489 | 219 | 111 | 3 | 118 | 332 | 27 | 245 | 3.39e-77 | 236 |
| Msa1193090 | MtrunA17_Chr8g0340661 | 43.629 | 259 | 119 | 3 | 4 | 260 | 10 | 243 | 7.46e-75 | 231 |
| Msa1193090 | MtrunA17_Chr8g0353691 | 48.402 | 219 | 109 | 2 | 118 | 332 | 27 | 245 | 6.66e-74 | 228 |
| Msa1193090 | MtrunA17_Chr8g0353871 | 51.685 | 178 | 79 | 5 | 78 | 250 | 3 | 178 | 3.99e-52 | 170 |
| Msa1193090 | MtrunA17_Chr8g0353861 | 50.641 | 156 | 73 | 3 | 22 | 175 | 20 | 173 | 3.79e-48 | 161 |
| Msa1193090 | MtrunA17_Chr3g0094781 | 68.317 | 101 | 31 | 1 | 1 | 100 | 1 | 101 | 5.30e-43 | 144 |
| Msa1193090 | MtrunA17_Chr8g0353631 | 45.238 | 126 | 68 | 1 | 207 | 332 | 4 | 128 | 9.27e-31 | 113 |
| Msa1193090 | MtrunA17_Chr8g0353841 | 50.505 | 99 | 49 | 0 | 224 | 322 | 4 | 102 | 1.49e-29 | 108 |
| Msa1193090 | MtrunA17_Chr8g0366161 | 83.607 | 61 | 10 | 0 | 224 | 284 | 2 | 62 | 4.98e-28 | 103 |
| Msa1193090 | MtrunA17_Chr8g0366171 | 77.778 | 36 | 8 | 0 | 150 | 185 | 28 | 63 | 5.28e-15 | 68.9 |
| Msa1193090 | MtrunA17_Chr8g0353671 | 37.079 | 89 | 38 | 1 | 216 | 304 | 44 | 114 | 6.73e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193090 | AT5G07010.1 | 49.231 | 325 | 161 | 2 | 11 | 332 | 33 | 356 | 1.29e-120 | 352 |
| Msa1193090 | AT2G03760.1 | 52.599 | 327 | 147 | 3 | 8 | 332 | 4 | 324 | 1.32e-117 | 343 |
| Msa1193090 | AT3G45070.1 | 52.500 | 320 | 149 | 3 | 15 | 332 | 5 | 323 | 1.18e-114 | 335 |
| Msa1193090 | AT3G45070.3 | 52.500 | 320 | 149 | 3 | 15 | 332 | 10 | 328 | 1.21e-114 | 335 |
| Msa1193090 | AT3G45070.2 | 52.500 | 320 | 149 | 3 | 15 | 332 | 37 | 355 | 1.61e-114 | 336 |
| Msa1193090 | AT2G03770.1 | 48.916 | 323 | 156 | 2 | 4 | 325 | 1 | 315 | 3.66e-113 | 331 |
| Msa1193090 | AT5G07000.1 | 47.826 | 322 | 162 | 3 | 16 | 332 | 24 | 344 | 1.07e-109 | 323 |
| Msa1193090 | AT3G45080.1 | 51.090 | 321 | 153 | 4 | 15 | 332 | 10 | 329 | 5.07e-108 | 318 |
| Msa1193090 | AT5G43690.1 | 48.673 | 339 | 159 | 6 | 1 | 332 | 1 | 331 | 6.40e-106 | 313 |
| Msa1193090 | AT1G13420.1 | 51.290 | 310 | 145 | 4 | 25 | 332 | 26 | 331 | 2.43e-104 | 309 |
| Msa1193090 | AT2G03750.1 | 48.338 | 331 | 168 | 3 | 3 | 332 | 22 | 350 | 2.82e-104 | 310 |
| Msa1193090 | AT4G26280.1 | 48.408 | 314 | 141 | 2 | 15 | 325 | 7 | 302 | 1.15e-98 | 294 |
| Msa1193090 | AT1G28170.1 | 50.154 | 325 | 155 | 6 | 11 | 332 | 6 | 326 | 1.71e-98 | 294 |
| Msa1193090 | AT1G18590.1 | 44.409 | 313 | 162 | 5 | 25 | 330 | 34 | 341 | 5.43e-94 | 283 |
| Msa1193090 | AT2G14920.1 | 46.497 | 314 | 160 | 4 | 25 | 332 | 22 | 333 | 2.21e-93 | 281 |
| Msa1193090 | AT1G74100.1 | 43.038 | 316 | 162 | 6 | 25 | 330 | 26 | 333 | 1.49e-91 | 277 |
| Msa1193090 | AT1G74090.1 | 46.497 | 314 | 154 | 8 | 25 | 330 | 38 | 345 | 2.62e-86 | 264 |
| Msa1193090 | AT1G13430.1 | 45.122 | 328 | 158 | 5 | 25 | 332 | 26 | 351 | 2.20e-84 | 259 |
| Msa1193090 | AT2G27570.1 | 41.693 | 319 | 130 | 4 | 15 | 332 | 10 | 273 | 2.64e-80 | 246 |
Find 71 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATCAATATCAAGGATTT+TGG | 0.103784 | 8_1:-39268292 | Msa1193090:CDS |
| TCATGCTCTTGTTCCCTTCT+TGG | 0.120006 | 8_1:-39268084 | Msa1193090:CDS |
| AAAGGATGGTTCTGAATATT+TGG | 0.223698 | 8_1:+39268122 | None:intergenic |
| AAGCCAAGTGGTACCTGATT+TGG | 0.229554 | 8_1:+39268184 | None:intergenic |
| ATATCAACTCCTTGCATTCT+TGG | 0.265457 | 8_1:+39268354 | None:intergenic |
| TTTGTCTCTTTCACAGATTT+TGG | 0.271932 | 8_1:+39267966 | None:intergenic |
| TGTAGAGGAGTGAGTTCTTA+TGG | 0.275090 | 8_1:-39267819 | Msa1193090:CDS |
| TCATCATCCTGCAAGTATTT+AGG | 0.284119 | 8_1:+39268383 | None:intergenic |
| GCCCTTGGATTCTTCTTCAT+TGG | 0.290617 | 8_1:+39267653 | None:intergenic |
| TGAGTTCTTATGGACCCTTT+TGG | 0.306745 | 8_1:-39267809 | Msa1193090:CDS |
| GGGAGCATGTATTAGGATAT+TGG | 0.331818 | 8_1:-39267788 | Msa1193090:CDS |
| AGCCAAGTGGTACCTGATTT+GGG | 0.335808 | 8_1:+39268185 | None:intergenic |
| CTCTCAAAAGCCTCTTCTAA+TGG | 0.341934 | 8_1:+39267846 | None:intergenic |
| CTAAGATGATATCTGAATCT+AGG | 0.344853 | 8_1:+39268216 | None:intergenic |
| TTTATAAACATCACCTTCTC+TGG | 0.349912 | 8_1:+39267747 | None:intergenic |
| AGTGAAACAAACATGTCTTT+AGG | 0.355827 | 8_1:+39267915 | None:intergenic |
| CATAATCTTTGTCACTATAA+AGG | 0.357838 | 8_1:+39268054 | None:intergenic |
| TCTTGTACCTAAATACTTGC+AGG | 0.394811 | 8_1:-39268390 | Msa1193090:CDS |
| GATTCTTCTTCATTGGAGAA+TGG | 0.413955 | 8_1:+39267660 | None:intergenic |
| TTAGTTACCGCTCCCAAATC+AGG | 0.417298 | 8_1:-39268197 | Msa1193090:CDS |
| AACACCTGTTGCTACTCTTC+CGG | 0.418445 | 8_1:+39267566 | None:intergenic |
| GCTGTGGCCAAGTCGGAGAT+TGG | 0.420103 | 8_1:-39267524 | Msa1193090:CDS |
| TCCTAATACATGCTCCCAAA+AGG | 0.430142 | 8_1:+39267794 | None:intergenic |
| AGGATATTGGAAGGAAAGCT+TGG | 0.445940 | 8_1:-39267775 | Msa1193090:CDS |
| GGAGATAAAGAGTGAAGGTC+AGG | 0.453042 | 8_1:+39268029 | None:intergenic |
| AAGACATGTTTGTTTCACTT+TGG | 0.453802 | 8_1:-39267911 | Msa1193090:CDS |
| TAAGATGATATCTGAATCTA+GGG | 0.463673 | 8_1:+39268217 | None:intergenic |
| TGTGTGGAGAAGAGTCTTGG+AGG | 0.474226 | 8_1:+39268008 | None:intergenic |
| CACTATCACCGAAAATAAAG+TGG | 0.478259 | 8_1:-39267463 | Msa1193090:CDS |
| TATATCATCAACCATGCCCT+TGG | 0.479593 | 8_1:+39267638 | None:intergenic |
| TCCCACACTCATCAATATCA+AGG | 0.480214 | 8_1:-39268299 | Msa1193090:CDS |
| CGATCATTTCAGTTGTGAGA+AGG | 0.489768 | 8_1:+39267496 | None:intergenic |
| GTTGATATCCACCTTGCCAT+TGG | 0.490567 | 8_1:-39268339 | Msa1193090:CDS |
| TGAGAACTTGAGCAACTTGG+AGG | 0.492399 | 8_1:-39267598 | Msa1193090:CDS |
| GAAAATAAAGTGGGTAAACA+TGG | 0.493210 | 8_1:-39267453 | Msa1193090:CDS |
| AACTTGGAGGTCAACAAGAC+CGG | 0.513880 | 8_1:-39267585 | Msa1193090:CDS |
| GAATATTTGGATACTTGTTG+CGG | 0.514493 | 8_1:+39268135 | None:intergenic |
| CCTAATACATGCTCCCAAAA+GGG | 0.526000 | 8_1:+39267795 | None:intergenic |
| ATAAAGGTCAATCTCCAAGA+AGG | 0.527045 | 8_1:+39268070 | None:intergenic |
| TTCATCACTTAATTCTGCCA+TGG | 0.537127 | 8_1:+39268418 | None:intergenic |
| CTCCCAAATCAGGTACCACT+TGG | 0.546400 | 8_1:-39268187 | Msa1193090:CDS |
| GGGAACAAGAGCATGAGGGT+TGG | 0.547139 | 8_1:+39268091 | None:intergenic |
| ATGAGTGTGGGATAAAATCC+AGG | 0.549497 | 8_1:+39268310 | None:intergenic |
| AAGACCGGAAGAGTAGCAAC+AGG | 0.551206 | 8_1:-39267570 | Msa1193090:CDS |
| AAAGCCTCTTCTAATGGAAG+TGG | 0.551607 | 8_1:+39267852 | None:intergenic |
| CTCCAATGAAGAAGAATCCA+AGG | 0.560806 | 8_1:-39267655 | Msa1193090:CDS |
| ATATGTGTGGAGAAGAGTCT+TGG | 0.570405 | 8_1:+39268005 | None:intergenic |
| TCCTTGATATTGATGAGTGT+GGG | 0.585586 | 8_1:+39268298 | None:intergenic |
| TAAAGGTCAATCTCCAAGAA+GGG | 0.586164 | 8_1:+39268071 | None:intergenic |
| AAGCTTGGAAAGGCCAGAGA+AGG | 0.595580 | 8_1:-39267760 | Msa1193090:CDS |
| TGACTTAAGCCAAGAATGCA+AGG | 0.597377 | 8_1:-39268363 | Msa1193090:CDS |
| AGGACCACTTCCATTAGAAG+AGG | 0.602220 | 8_1:-39267856 | Msa1193090:CDS |
| TGAAGAAGAATCCAAGGGCA+TGG | 0.602522 | 8_1:-39267649 | Msa1193090:CDS |
| AAGAAGGGAACAAGAGCATG+AGG | 0.605363 | 8_1:+39268086 | None:intergenic |
| ACTTTGGCATTTCTCAAACA+AGG | 0.607779 | 8_1:-39267895 | Msa1193090:CDS |
| GAAAGAGACAAACTGTAAAG+TGG | 0.612789 | 8_1:-39267955 | Msa1193090:CDS |
| ATCCTTGATATTGATGAGTG+TGG | 0.613449 | 8_1:+39268297 | None:intergenic |
| AGTCAATGCTTTAAGCCAAG+TGG | 0.615961 | 8_1:+39268172 | None:intergenic |
| AAGGTAAGAGCACAAAGTAG+AGG | 0.616375 | 8_1:-39267876 | Msa1193090:CDS |
| GGTTGGAAGTGAGCAAAGGA+TGG | 0.616548 | 8_1:+39268108 | None:intergenic |
| AAAATAAAGTGGGTAAACAT+GGG | 0.621517 | 8_1:-39267452 | Msa1193090:CDS |
| CAAAACATATGGAATATGTG+TGG | 0.621592 | 8_1:+39267992 | None:intergenic |
| GCATGTATTAGGATATTGGA+AGG | 0.624163 | 8_1:-39267784 | Msa1193090:CDS |
| TCTGACAAGATAAAACACCT+TGG | 0.628186 | 8_1:+39268252 | None:intergenic |
| AGTGGTACCTGATTTGGGAG+CGG | 0.637866 | 8_1:+39268190 | None:intergenic |
| TTGGAGGAGATAAAGAGTGA+AGG | 0.643843 | 8_1:+39268024 | None:intergenic |
| TCCAATGAAGAAGAATCCAA+GGG | 0.650057 | 8_1:-39267654 | Msa1193090:CDS |
| ACTATCACCGAAAATAAAGT+GGG | 0.651764 | 8_1:-39267462 | Msa1193090:CDS |
| TGAGGGTTGGAAGTGAGCAA+AGG | 0.653409 | 8_1:+39268104 | None:intergenic |
| ATTGGAAGGAAAGCTTGGAA+AGG | 0.672349 | 8_1:-39267770 | Msa1193090:CDS |
| AGAAGGGAACAAGAGCATGA+GGG | 0.677902 | 8_1:+39268087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTCAAATAAAAACT+AGG | + | chr8_1:39268157-39268176 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCAAATAAAAACT+AGG | + | chr8_1:39268157-39268176 | None:intergenic | 10.0% |
| !!! | AAAAAAATTGCTGAGTTTTT+GGG | - | chr8_1:39268169-39268188 | Msa1193090:CDS | 20.0% |
| !!! | AAAAAAATTGCTGAGTTTTT+GGG | - | chr8_1:39268169-39268188 | Msa1193090:CDS | 20.0% |
| ! | TAAGATGATATCTGAATCTA+GGG | + | chr8_1:39267642-39267661 | None:intergenic | 25.0% |
| ! | CATAATCTTTGTCACTATAA+AGG | + | chr8_1:39267805-39267824 | None:intergenic | 25.0% |
| !! | GAAAAAAATTGCTGAGTTTT+TGG | - | chr8_1:39268168-39268187 | Msa1193090:CDS | 25.0% |
| !!! | ATGTTTACCCACTTTATTTT+CGG | + | chr8_1:39268404-39268423 | None:intergenic | 25.0% |
| ! | AAAATAAAGTGGGTAAACAT+GGG | - | chr8_1:39268404-39268423 | Msa1193090:CDS | 25.0% |
| ! | TAAGATGATATCTGAATCTA+GGG | + | chr8_1:39267642-39267661 | None:intergenic | 25.0% |
| ! | CATAATCTTTGTCACTATAA+AGG | + | chr8_1:39267805-39267824 | None:intergenic | 25.0% |
| !! | GAAAAAAATTGCTGAGTTTT+TGG | - | chr8_1:39268168-39268187 | Msa1193090:CDS | 25.0% |
| !!! | ATGTTTACCCACTTTATTTT+CGG | + | chr8_1:39268404-39268423 | None:intergenic | 25.0% |
| ! | AAAATAAAGTGGGTAAACAT+GGG | - | chr8_1:39268404-39268423 | Msa1193090:CDS | 25.0% |
| ! | CTCATCAATATCAAGGATTT+TGG | - | chr8_1:39267564-39267583 | Msa1193090:CDS | 30.0% |
| CTAAGATGATATCTGAATCT+AGG | + | chr8_1:39267643-39267662 | None:intergenic | 30.0% | |
| ! | GAATATTTGGATACTTGTTG+CGG | + | chr8_1:39267724-39267743 | None:intergenic | 30.0% |
| !! | AAAGGATGGTTCTGAATATT+TGG | + | chr8_1:39267737-39267756 | None:intergenic | 30.0% |
| CAAAACATATGGAATATGTG+TGG | + | chr8_1:39267867-39267886 | None:intergenic | 30.0% | |
| !! | GATTTTGGCAACAAAACATA+TGG | + | chr8_1:39267878-39267897 | None:intergenic | 30.0% |
| ! | TTTGTCTCTTTCACAGATTT+TGG | + | chr8_1:39267893-39267912 | None:intergenic | 30.0% |
| AGTGAAACAAACATGTCTTT+AGG | + | chr8_1:39267944-39267963 | None:intergenic | 30.0% | |
| AAGACATGTTTGTTTCACTT+TGG | - | chr8_1:39267945-39267964 | Msa1193090:CDS | 30.0% | |
| TTTATAAACATCACCTTCTC+TGG | + | chr8_1:39268112-39268131 | None:intergenic | 30.0% | |
| !!! | AATAAAGCTTTTTTTCGCTG+TGG | - | chr8_1:39268316-39268335 | Msa1193090:CDS | 30.0% |
| ACTATCACCGAAAATAAAGT+GGG | - | chr8_1:39268394-39268413 | Msa1193090:CDS | 30.0% | |
| GAAAATAAAGTGGGTAAACA+TGG | - | chr8_1:39268403-39268422 | Msa1193090:CDS | 30.0% | |
| ! | CTCATCAATATCAAGGATTT+TGG | - | chr8_1:39267564-39267583 | Msa1193090:CDS | 30.0% |
| CTAAGATGATATCTGAATCT+AGG | + | chr8_1:39267643-39267662 | None:intergenic | 30.0% | |
| ! | GAATATTTGGATACTTGTTG+CGG | + | chr8_1:39267724-39267743 | None:intergenic | 30.0% |
| !! | AAAGGATGGTTCTGAATATT+TGG | + | chr8_1:39267737-39267756 | None:intergenic | 30.0% |
| CAAAACATATGGAATATGTG+TGG | + | chr8_1:39267867-39267886 | None:intergenic | 30.0% | |
| !! | GATTTTGGCAACAAAACATA+TGG | + | chr8_1:39267878-39267897 | None:intergenic | 30.0% |
| ! | TTTGTCTCTTTCACAGATTT+TGG | + | chr8_1:39267893-39267912 | None:intergenic | 30.0% |
| AGTGAAACAAACATGTCTTT+AGG | + | chr8_1:39267944-39267963 | None:intergenic | 30.0% | |
| AAGACATGTTTGTTTCACTT+TGG | - | chr8_1:39267945-39267964 | Msa1193090:CDS | 30.0% | |
| TTTATAAACATCACCTTCTC+TGG | + | chr8_1:39268112-39268131 | None:intergenic | 30.0% | |
| !!! | AATAAAGCTTTTTTTCGCTG+TGG | - | chr8_1:39268316-39268335 | Msa1193090:CDS | 30.0% |
| ACTATCACCGAAAATAAAGT+GGG | - | chr8_1:39268394-39268413 | Msa1193090:CDS | 30.0% | |
| GAAAATAAAGTGGGTAAACA+TGG | - | chr8_1:39268403-39268422 | Msa1193090:CDS | 30.0% | |
| TCTTGTACCTAAATACTTGC+AGG | - | chr8_1:39267466-39267485 | Msa1193090:CDS | 35.0% | |
| TCATCATCCTGCAAGTATTT+AGG | + | chr8_1:39267476-39267495 | None:intergenic | 35.0% | |
| ATATCAACTCCTTGCATTCT+TGG | + | chr8_1:39267505-39267524 | None:intergenic | 35.0% | |
| !! | AAAATCCAGGCTTTTTCCAA+TGG | + | chr8_1:39267536-39267555 | None:intergenic | 35.0% |
| TCCTTGATATTGATGAGTGT+GGG | + | chr8_1:39267561-39267580 | None:intergenic | 35.0% | |
| ATCCTTGATATTGATGAGTG+TGG | + | chr8_1:39267562-39267581 | None:intergenic | 35.0% | |
| ATTGCCACAAAAATTCTCCA+AGG | - | chr8_1:39267587-39267606 | Msa1193090:CDS | 35.0% | |
| ! | AACACCTTGGAGAATTTTTG+TGG | + | chr8_1:39267594-39267613 | None:intergenic | 35.0% |
| TCTGACAAGATAAAACACCT+TGG | + | chr8_1:39267607-39267626 | None:intergenic | 35.0% | |
| TAAAGGTCAATCTCCAAGAA+GGG | + | chr8_1:39267788-39267807 | None:intergenic | 35.0% | |
| ATAAAGGTCAATCTCCAAGA+AGG | + | chr8_1:39267789-39267808 | None:intergenic | 35.0% | |
| GAAAGAGACAAACTGTAAAG+TGG | - | chr8_1:39267901-39267920 | Msa1193090:CDS | 35.0% | |
| ACTTTGGCATTTCTCAAACA+AGG | - | chr8_1:39267961-39267980 | Msa1193090:CDS | 35.0% | |
| !! | GCTTTTGAGAGTTTTTGTAG+AGG | - | chr8_1:39268022-39268041 | Msa1193090:CDS | 35.0% |
| GCATGTATTAGGATATTGGA+AGG | - | chr8_1:39268072-39268091 | Msa1193090:CDS | 35.0% | |
| GATTCTTCTTCATTGGAGAA+TGG | + | chr8_1:39268199-39268218 | None:intergenic | 35.0% | |
| TCCAATGAAGAAGAATCCAA+GGG | - | chr8_1:39268202-39268221 | Msa1193090:CDS | 35.0% | |
| !! | TTTTGAGAACTTGAGCAACT+TGG | - | chr8_1:39268255-39268274 | Msa1193090:CDS | 35.0% |
| CACTATCACCGAAAATAAAG+TGG | - | chr8_1:39268393-39268412 | Msa1193090:CDS | 35.0% | |
| TCTTGTACCTAAATACTTGC+AGG | - | chr8_1:39267466-39267485 | Msa1193090:CDS | 35.0% | |
| TCATCATCCTGCAAGTATTT+AGG | + | chr8_1:39267476-39267495 | None:intergenic | 35.0% | |
| ATATCAACTCCTTGCATTCT+TGG | + | chr8_1:39267505-39267524 | None:intergenic | 35.0% | |
| !! | AAAATCCAGGCTTTTTCCAA+TGG | + | chr8_1:39267536-39267555 | None:intergenic | 35.0% |
| TCCTTGATATTGATGAGTGT+GGG | + | chr8_1:39267561-39267580 | None:intergenic | 35.0% | |
| ATCCTTGATATTGATGAGTG+TGG | + | chr8_1:39267562-39267581 | None:intergenic | 35.0% | |
| ATTGCCACAAAAATTCTCCA+AGG | - | chr8_1:39267587-39267606 | Msa1193090:CDS | 35.0% | |
| ! | AACACCTTGGAGAATTTTTG+TGG | + | chr8_1:39267594-39267613 | None:intergenic | 35.0% |
| TCTGACAAGATAAAACACCT+TGG | + | chr8_1:39267607-39267626 | None:intergenic | 35.0% | |
| TAAAGGTCAATCTCCAAGAA+GGG | + | chr8_1:39267788-39267807 | None:intergenic | 35.0% | |
| ATAAAGGTCAATCTCCAAGA+AGG | + | chr8_1:39267789-39267808 | None:intergenic | 35.0% | |
| GAAAGAGACAAACTGTAAAG+TGG | - | chr8_1:39267901-39267920 | Msa1193090:CDS | 35.0% | |
| ACTTTGGCATTTCTCAAACA+AGG | - | chr8_1:39267961-39267980 | Msa1193090:CDS | 35.0% | |
| !! | GCTTTTGAGAGTTTTTGTAG+AGG | - | chr8_1:39268022-39268041 | Msa1193090:CDS | 35.0% |
| GCATGTATTAGGATATTGGA+AGG | - | chr8_1:39268072-39268091 | Msa1193090:CDS | 35.0% | |
| GATTCTTCTTCATTGGAGAA+TGG | + | chr8_1:39268199-39268218 | None:intergenic | 35.0% | |
| TCCAATGAAGAAGAATCCAA+GGG | - | chr8_1:39268202-39268221 | Msa1193090:CDS | 35.0% | |
| !! | TTTTGAGAACTTGAGCAACT+TGG | - | chr8_1:39268255-39268274 | Msa1193090:CDS | 35.0% |
| CACTATCACCGAAAATAAAG+TGG | - | chr8_1:39268393-39268412 | Msa1193090:CDS | 35.0% | |
| TGACTTAAGCCAAGAATGCA+AGG | - | chr8_1:39267493-39267512 | Msa1193090:CDS | 40.0% | |
| ATGAGTGTGGGATAAAATCC+AGG | + | chr8_1:39267549-39267568 | None:intergenic | 40.0% | |
| TCCCACACTCATCAATATCA+AGG | - | chr8_1:39267557-39267576 | Msa1193090:CDS | 40.0% | |
| ! | AGTCAATGCTTTAAGCCAAG+TGG | + | chr8_1:39267687-39267706 | None:intergenic | 40.0% |
| TTGGAGGAGATAAAGAGTGA+AGG | + | chr8_1:39267835-39267854 | None:intergenic | 40.0% | |
| ATATGTGTGGAGAAGAGTCT+TGG | + | chr8_1:39267854-39267873 | None:intergenic | 40.0% | |
| ! | AAGGTAAGAGCACAAAGTAG+AGG | - | chr8_1:39267980-39267999 | Msa1193090:CDS | 40.0% |
| AAAGCCTCTTCTAATGGAAG+TGG | + | chr8_1:39268007-39268026 | None:intergenic | 40.0% | |
| CTCTCAAAAGCCTCTTCTAA+TGG | + | chr8_1:39268013-39268032 | None:intergenic | 40.0% | |
| TGTAGAGGAGTGAGTTCTTA+TGG | - | chr8_1:39268037-39268056 | Msa1193090:CDS | 40.0% | |
| ! | TGAGTTCTTATGGACCCTTT+TGG | - | chr8_1:39268047-39268066 | Msa1193090:CDS | 40.0% |
| ! | GAGTTCTTATGGACCCTTTT+GGG | - | chr8_1:39268048-39268067 | Msa1193090:CDS | 40.0% |
| CCTAATACATGCTCCCAAAA+GGG | + | chr8_1:39268064-39268083 | None:intergenic | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | + | chr8_1:39268065-39268084 | None:intergenic | 40.0% | |
| ! | GGGAGCATGTATTAGGATAT+TGG | - | chr8_1:39268068-39268087 | Msa1193090:CDS | 40.0% |
| AGGATATTGGAAGGAAAGCT+TGG | - | chr8_1:39268081-39268100 | Msa1193090:CDS | 40.0% | |
| ATTGGAAGGAAAGCTTGGAA+AGG | - | chr8_1:39268086-39268105 | Msa1193090:CDS | 40.0% | |
| CTCCAATGAAGAAGAATCCA+AGG | - | chr8_1:39268201-39268220 | Msa1193090:CDS | 40.0% | |
| TATATCATCAACCATGCCCT+TGG | + | chr8_1:39268221-39268240 | None:intergenic | 40.0% | |
| CGATCATTTCAGTTGTGAGA+AGG | + | chr8_1:39268363-39268382 | None:intergenic | 40.0% | |
| TGACTTAAGCCAAGAATGCA+AGG | - | chr8_1:39267493-39267512 | Msa1193090:CDS | 40.0% | |
| ATGAGTGTGGGATAAAATCC+AGG | + | chr8_1:39267549-39267568 | None:intergenic | 40.0% | |
| TCCCACACTCATCAATATCA+AGG | - | chr8_1:39267557-39267576 | Msa1193090:CDS | 40.0% | |
| ! | AGTCAATGCTTTAAGCCAAG+TGG | + | chr8_1:39267687-39267706 | None:intergenic | 40.0% |
| TTGGAGGAGATAAAGAGTGA+AGG | + | chr8_1:39267835-39267854 | None:intergenic | 40.0% | |
| ATATGTGTGGAGAAGAGTCT+TGG | + | chr8_1:39267854-39267873 | None:intergenic | 40.0% | |
| ! | AAGGTAAGAGCACAAAGTAG+AGG | - | chr8_1:39267980-39267999 | Msa1193090:CDS | 40.0% |
| AAAGCCTCTTCTAATGGAAG+TGG | + | chr8_1:39268007-39268026 | None:intergenic | 40.0% | |
| CTCTCAAAAGCCTCTTCTAA+TGG | + | chr8_1:39268013-39268032 | None:intergenic | 40.0% | |
| TGTAGAGGAGTGAGTTCTTA+TGG | - | chr8_1:39268037-39268056 | Msa1193090:CDS | 40.0% | |
| ! | TGAGTTCTTATGGACCCTTT+TGG | - | chr8_1:39268047-39268066 | Msa1193090:CDS | 40.0% |
| ! | GAGTTCTTATGGACCCTTTT+GGG | - | chr8_1:39268048-39268067 | Msa1193090:CDS | 40.0% |
| CCTAATACATGCTCCCAAAA+GGG | + | chr8_1:39268064-39268083 | None:intergenic | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | + | chr8_1:39268065-39268084 | None:intergenic | 40.0% | |
| ! | GGGAGCATGTATTAGGATAT+TGG | - | chr8_1:39268068-39268087 | Msa1193090:CDS | 40.0% |
| AGGATATTGGAAGGAAAGCT+TGG | - | chr8_1:39268081-39268100 | Msa1193090:CDS | 40.0% | |
| ATTGGAAGGAAAGCTTGGAA+AGG | - | chr8_1:39268086-39268105 | Msa1193090:CDS | 40.0% | |
| CTCCAATGAAGAAGAATCCA+AGG | - | chr8_1:39268201-39268220 | Msa1193090:CDS | 40.0% | |
| TATATCATCAACCATGCCCT+TGG | + | chr8_1:39268221-39268240 | None:intergenic | 40.0% | |
| CGATCATTTCAGTTGTGAGA+AGG | + | chr8_1:39268363-39268382 | None:intergenic | 40.0% | |
| GTTGATATCCACCTTGCCAT+TGG | - | chr8_1:39267517-39267536 | Msa1193090:CDS | 45.0% | |
| TTAGTTACCGCTCCCAAATC+AGG | - | chr8_1:39267659-39267678 | Msa1193090:CDS | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | + | chr8_1:39267674-39267693 | None:intergenic | 45.0% | |
| AAGCCAAGTGGTACCTGATT+TGG | + | chr8_1:39267675-39267694 | None:intergenic | 45.0% | |
| ! | AGAAGGGAACAAGAGCATGA+GGG | + | chr8_1:39267772-39267791 | None:intergenic | 45.0% |
| ! | AAGAAGGGAACAAGAGCATG+AGG | + | chr8_1:39267773-39267792 | None:intergenic | 45.0% |
| TCATGCTCTTGTTCCCTTCT+TGG | - | chr8_1:39267772-39267791 | Msa1193090:CDS | 45.0% | |
| GGAGATAAAGAGTGAAGGTC+AGG | + | chr8_1:39267830-39267849 | None:intergenic | 45.0% | |
| AGGACCACTTCCATTAGAAG+AGG | - | chr8_1:39268000-39268019 | Msa1193090:CDS | 45.0% | |
| !! | CCCTTTTGGGAGCATGTATT+AGG | - | chr8_1:39268061-39268080 | Msa1193090:CDS | 45.0% |
| GCCCTTGGATTCTTCTTCAT+TGG | + | chr8_1:39268206-39268225 | None:intergenic | 45.0% | |
| TGAAGAAGAATCCAAGGGCA+TGG | - | chr8_1:39268207-39268226 | Msa1193090:CDS | 45.0% | |
| TGAGAACTTGAGCAACTTGG+AGG | - | chr8_1:39268258-39268277 | Msa1193090:CDS | 45.0% | |
| AACTTGGAGGTCAACAAGAC+CGG | - | chr8_1:39268271-39268290 | Msa1193090:CDS | 45.0% | |
| AACACCTGTTGCTACTCTTC+CGG | + | chr8_1:39268293-39268312 | None:intergenic | 45.0% | |
| !!! | TTTTTTCGCTGTGGCCAAGT+CGG | - | chr8_1:39268325-39268344 | Msa1193090:CDS | 45.0% |
| ! | GGTTTTTCCAATCTCCGACT+TGG | + | chr8_1:39268342-39268361 | None:intergenic | 45.0% |
| GTTGATATCCACCTTGCCAT+TGG | - | chr8_1:39267517-39267536 | Msa1193090:CDS | 45.0% | |
| TTAGTTACCGCTCCCAAATC+AGG | - | chr8_1:39267659-39267678 | Msa1193090:CDS | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | + | chr8_1:39267674-39267693 | None:intergenic | 45.0% | |
| AAGCCAAGTGGTACCTGATT+TGG | + | chr8_1:39267675-39267694 | None:intergenic | 45.0% | |
| ! | AGAAGGGAACAAGAGCATGA+GGG | + | chr8_1:39267772-39267791 | None:intergenic | 45.0% |
| ! | AAGAAGGGAACAAGAGCATG+AGG | + | chr8_1:39267773-39267792 | None:intergenic | 45.0% |
| TCATGCTCTTGTTCCCTTCT+TGG | - | chr8_1:39267772-39267791 | Msa1193090:CDS | 45.0% | |
| GGAGATAAAGAGTGAAGGTC+AGG | + | chr8_1:39267830-39267849 | None:intergenic | 45.0% | |
| AGGACCACTTCCATTAGAAG+AGG | - | chr8_1:39268000-39268019 | Msa1193090:CDS | 45.0% | |
| !! | CCCTTTTGGGAGCATGTATT+AGG | - | chr8_1:39268061-39268080 | Msa1193090:CDS | 45.0% |
| GCCCTTGGATTCTTCTTCAT+TGG | + | chr8_1:39268206-39268225 | None:intergenic | 45.0% | |
| TGAAGAAGAATCCAAGGGCA+TGG | - | chr8_1:39268207-39268226 | Msa1193090:CDS | 45.0% | |
| TGAGAACTTGAGCAACTTGG+AGG | - | chr8_1:39268258-39268277 | Msa1193090:CDS | 45.0% | |
| AACTTGGAGGTCAACAAGAC+CGG | - | chr8_1:39268271-39268290 | Msa1193090:CDS | 45.0% | |
| AACACCTGTTGCTACTCTTC+CGG | + | chr8_1:39268293-39268312 | None:intergenic | 45.0% | |
| !!! | TTTTTTCGCTGTGGCCAAGT+CGG | - | chr8_1:39268325-39268344 | Msa1193090:CDS | 45.0% |
| ! | GGTTTTTCCAATCTCCGACT+TGG | + | chr8_1:39268342-39268361 | None:intergenic | 45.0% |
| !! | GGCTTTTTCCAATGGCAAGG+TGG | + | chr8_1:39267528-39267547 | None:intergenic | 50.0% |
| !! | CCAGGCTTTTTCCAATGGCA+AGG | + | chr8_1:39267531-39267550 | None:intergenic | 50.0% |
| CCTTGCCATTGGAAAAAGCC+TGG | - | chr8_1:39267528-39267547 | Msa1193090:CDS | 50.0% | |
| !! | AGTGGTACCTGATTTGGGAG+CGG | + | chr8_1:39267669-39267688 | None:intergenic | 50.0% |
| CTCCCAAATCAGGTACCACT+TGG | - | chr8_1:39267669-39267688 | Msa1193090:CDS | 50.0% | |
| GGTTGGAAGTGAGCAAAGGA+TGG | + | chr8_1:39267751-39267770 | None:intergenic | 50.0% | |
| TGAGGGTTGGAAGTGAGCAA+AGG | + | chr8_1:39267755-39267774 | None:intergenic | 50.0% | |
| TGTGTGGAGAAGAGTCTTGG+AGG | + | chr8_1:39267851-39267870 | None:intergenic | 50.0% | |
| AAGCTTGGAAAGGCCAGAGA+AGG | - | chr8_1:39268096-39268115 | Msa1193090:CDS | 50.0% | |
| AAGACCGGAAGAGTAGCAAC+AGG | - | chr8_1:39268286-39268305 | Msa1193090:CDS | 50.0% | |
| !! | GGCTTTTTCCAATGGCAAGG+TGG | + | chr8_1:39267528-39267547 | None:intergenic | 50.0% |
| !! | CCAGGCTTTTTCCAATGGCA+AGG | + | chr8_1:39267531-39267550 | None:intergenic | 50.0% |
| CCTTGCCATTGGAAAAAGCC+TGG | - | chr8_1:39267528-39267547 | Msa1193090:CDS | 50.0% | |
| !! | AGTGGTACCTGATTTGGGAG+CGG | + | chr8_1:39267669-39267688 | None:intergenic | 50.0% |
| CTCCCAAATCAGGTACCACT+TGG | - | chr8_1:39267669-39267688 | Msa1193090:CDS | 50.0% | |
| GGTTGGAAGTGAGCAAAGGA+TGG | + | chr8_1:39267751-39267770 | None:intergenic | 50.0% | |
| TGAGGGTTGGAAGTGAGCAA+AGG | + | chr8_1:39267755-39267774 | None:intergenic | 50.0% | |
| TGTGTGGAGAAGAGTCTTGG+AGG | + | chr8_1:39267851-39267870 | None:intergenic | 50.0% | |
| AAGCTTGGAAAGGCCAGAGA+AGG | - | chr8_1:39268096-39268115 | Msa1193090:CDS | 50.0% | |
| AAGACCGGAAGAGTAGCAAC+AGG | - | chr8_1:39268286-39268305 | Msa1193090:CDS | 50.0% | |
| ! | GGGAACAAGAGCATGAGGGT+TGG | + | chr8_1:39267768-39267787 | None:intergenic | 55.0% |
| ! | GGGAACAAGAGCATGAGGGT+TGG | + | chr8_1:39267768-39267787 | None:intergenic | 55.0% |
| GCTGTGGCCAAGTCGGAGAT+TGG | - | chr8_1:39268332-39268351 | Msa1193090:CDS | 60.0% | |
| GCTGTGGCCAAGTCGGAGAT+TGG | - | chr8_1:39268332-39268351 | Msa1193090:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 39267440 | 39268438 | 39267440 | ID=Msa1193090;Name=Msa1193090 |
| chr8_1 | mRNA | 39267440 | 39268438 | 39267440 | ID=Msa1193090-mRNA-1;Parent=Msa1193090;Name=Msa1193090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|332 |
| chr8_1 | exon | 39267440 | 39268438 | 39267440 | ID=Msa1193090-mRNA-1:exon:12840;Parent=Msa1193090-mRNA-1 |
| chr8_1 | CDS | 39267440 | 39268438 | 39267440 | ID=Msa1193090-mRNA-1:cds;Parent=Msa1193090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
