Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1251040 | AET03213.1 | 84.985 | 333 | 34 | 2 | 1 | 332 | 1 | 318 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1251040 | sp|Q8L5A7|SOT15_ARATH | 48.923 | 325 | 162 | 2 | 11 | 332 | 33 | 356 | 1.01e-118 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1251040 | Msa1291620 | 0.844978 | 5.406695e-59 | -8.615850e-47 |
| Msa1193090 | Msa1251040 | 0.936051 | 3.218239e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1251040 | MtrunA17_Chr8g0366181 | 83.784 | 333 | 32 | 2 | 1 | 332 | 1 | 312 | 0.0 | 556 |
| Msa1251040 | MtrunA17_Chr3g0091901 | 78.144 | 334 | 71 | 1 | 1 | 332 | 1 | 334 | 0.0 | 549 |
| Msa1251040 | MtrunA17_Chr8g0366191 | 76.577 | 333 | 77 | 1 | 1 | 332 | 1 | 333 | 0.0 | 540 |
| Msa1251040 | MtrunA17_Chr3g0096081 | 71.084 | 332 | 94 | 1 | 3 | 332 | 5 | 336 | 0.0 | 507 |
| Msa1251040 | MtrunA17_Chr3g0081701 | 50.629 | 318 | 156 | 1 | 16 | 332 | 20 | 337 | 5.17e-120 | 349 |
| Msa1251040 | MtrunA17_Chr7g0215701 | 48.287 | 321 | 162 | 2 | 16 | 332 | 12 | 332 | 1.59e-115 | 337 |
| Msa1251040 | MtrunA17_Chr3g0094771 | 70.909 | 220 | 63 | 1 | 113 | 332 | 2 | 220 | 1.67e-112 | 325 |
| Msa1251040 | MtrunA17_Chr7g0215691 | 46.875 | 320 | 163 | 3 | 16 | 332 | 18 | 333 | 3.31e-111 | 327 |
| Msa1251040 | MtrunA17_Chr8g0366241 | 79.787 | 188 | 38 | 0 | 145 | 332 | 22 | 209 | 2.63e-110 | 319 |
| Msa1251040 | MtrunA17_Chr8g0353591 | 48.243 | 313 | 155 | 5 | 24 | 332 | 15 | 324 | 3.43e-107 | 316 |
| Msa1251040 | MtrunA17_Chr8g0351331 | 44.377 | 329 | 177 | 3 | 10 | 332 | 1 | 329 | 6.64e-106 | 313 |
| Msa1251040 | MtrunA17_Chr8g0353731 | 47.706 | 327 | 155 | 5 | 4 | 326 | 21 | 335 | 4.99e-104 | 308 |
| Msa1251040 | MtrunA17_Chr8g0353721 | 43.243 | 333 | 175 | 4 | 4 | 332 | 21 | 343 | 9.23e-103 | 305 |
| Msa1251040 | MtrunA17_Chr8g0354381 | 49.035 | 259 | 128 | 3 | 78 | 332 | 2 | 260 | 2.29e-90 | 271 |
| Msa1251040 | MtrunA17_Chr8g0353921 | 47.489 | 219 | 111 | 3 | 118 | 332 | 27 | 245 | 2.15e-77 | 237 |
| Msa1251040 | MtrunA17_Chr8g0353691 | 48.402 | 219 | 109 | 2 | 118 | 332 | 27 | 245 | 8.27e-74 | 228 |
| Msa1251040 | MtrunA17_Chr8g0340661 | 43.243 | 259 | 120 | 3 | 4 | 260 | 10 | 243 | 1.42e-73 | 227 |
| Msa1251040 | MtrunA17_Chr8g0353871 | 51.685 | 178 | 79 | 5 | 78 | 250 | 3 | 178 | 8.02e-53 | 172 |
| Msa1251040 | MtrunA17_Chr8g0353861 | 50.000 | 156 | 74 | 3 | 22 | 175 | 20 | 173 | 4.01e-47 | 158 |
| Msa1251040 | MtrunA17_Chr3g0094781 | 68.317 | 101 | 31 | 1 | 1 | 100 | 1 | 101 | 4.32e-43 | 144 |
| Msa1251040 | MtrunA17_Chr8g0353631 | 45.238 | 126 | 68 | 1 | 207 | 332 | 4 | 128 | 1.02e-30 | 113 |
| Msa1251040 | MtrunA17_Chr8g0353841 | 50.505 | 99 | 49 | 0 | 224 | 322 | 4 | 102 | 1.30e-29 | 109 |
| Msa1251040 | MtrunA17_Chr8g0366161 | 83.607 | 61 | 10 | 0 | 224 | 284 | 2 | 62 | 4.63e-28 | 103 |
| Msa1251040 | MtrunA17_Chr8g0366171 | 77.778 | 36 | 8 | 0 | 150 | 185 | 28 | 63 | 5.28e-15 | 68.9 |
| Msa1251040 | MtrunA17_Chr8g0353671 | 37.079 | 89 | 38 | 1 | 216 | 304 | 44 | 114 | 6.27e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1251040 | AT5G07010.1 | 48.923 | 325 | 162 | 2 | 11 | 332 | 33 | 356 | 1.03e-119 | 349 |
| Msa1251040 | AT2G03760.1 | 51.682 | 327 | 150 | 3 | 8 | 332 | 4 | 324 | 7.75e-117 | 341 |
| Msa1251040 | AT3G45070.1 | 51.875 | 320 | 151 | 3 | 15 | 332 | 5 | 323 | 2.67e-113 | 332 |
| Msa1251040 | AT3G45070.3 | 51.875 | 320 | 151 | 3 | 15 | 332 | 10 | 328 | 2.77e-113 | 332 |
| Msa1251040 | AT3G45070.2 | 51.875 | 320 | 151 | 3 | 15 | 332 | 37 | 355 | 4.58e-113 | 332 |
| Msa1251040 | AT2G03770.1 | 48.607 | 323 | 157 | 2 | 4 | 325 | 1 | 315 | 4.64e-112 | 328 |
| Msa1251040 | AT5G07000.1 | 47.516 | 322 | 163 | 3 | 16 | 332 | 24 | 344 | 8.54e-109 | 321 |
| Msa1251040 | AT3G45080.1 | 50.467 | 321 | 155 | 4 | 15 | 332 | 10 | 329 | 2.25e-106 | 314 |
| Msa1251040 | AT5G43690.1 | 48.083 | 339 | 161 | 6 | 1 | 332 | 1 | 331 | 1.59e-104 | 310 |
| Msa1251040 | AT2G03750.1 | 48.036 | 331 | 169 | 3 | 3 | 332 | 22 | 350 | 4.94e-103 | 306 |
| Msa1251040 | AT1G13420.1 | 50.645 | 310 | 147 | 4 | 25 | 332 | 26 | 331 | 1.22e-102 | 305 |
| Msa1251040 | AT4G26280.1 | 47.771 | 314 | 143 | 2 | 15 | 325 | 7 | 302 | 6.61e-97 | 290 |
| Msa1251040 | AT1G28170.1 | 49.538 | 325 | 157 | 6 | 11 | 332 | 6 | 326 | 8.11e-97 | 290 |
| Msa1251040 | AT1G18590.1 | 43.770 | 313 | 164 | 5 | 25 | 330 | 34 | 341 | 8.57e-93 | 280 |
| Msa1251040 | AT2G14920.1 | 45.860 | 314 | 162 | 4 | 25 | 332 | 22 | 333 | 5.27e-92 | 278 |
| Msa1251040 | AT1G74100.1 | 42.405 | 316 | 164 | 6 | 25 | 330 | 26 | 333 | 3.14e-90 | 273 |
| Msa1251040 | AT1G74090.1 | 45.860 | 314 | 156 | 8 | 25 | 330 | 38 | 345 | 4.99e-85 | 260 |
| Msa1251040 | AT1G13430.1 | 44.512 | 328 | 160 | 5 | 25 | 332 | 26 | 351 | 7.03e-83 | 255 |
| Msa1251040 | AT2G27570.1 | 41.066 | 319 | 132 | 4 | 15 | 332 | 10 | 273 | 1.27e-78 | 241 |
Find 68 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATCAATATCAAGGATTT+TGG | 0.103784 | 8_2:-46713176 | Msa1251040:CDS |
| TCATGCTCTTGTTCCCTTCT+TGG | 0.158043 | 8_2:-46712968 | Msa1251040:CDS |
| AAGCCAAGTGGTACCTGATT+TGG | 0.229554 | 8_2:+46713068 | None:intergenic |
| ATATCAACTCCTTGCATTCT+TGG | 0.265457 | 8_2:+46713238 | None:intergenic |
| TTTGTCTCTTTCACAGATTT+TGG | 0.271932 | 8_2:+46712850 | None:intergenic |
| TGTAGAGGAGTGAGTTCTTA+TGG | 0.275090 | 8_2:-46712703 | Msa1251040:CDS |
| TCATCATCCTGCAAGTATTT+AGG | 0.284119 | 8_2:+46713267 | None:intergenic |
| GCCCTTGGATTCTTCTTCAT+TGG | 0.290617 | 8_2:+46712537 | None:intergenic |
| TGAGTTCTTATGGACCCTTT+TGG | 0.306745 | 8_2:-46712693 | Msa1251040:CDS |
| GGGAGCATGTATTAGGATAT+TGG | 0.331818 | 8_2:-46712672 | Msa1251040:CDS |
| AGCCAAGTGGTACCTGATTT+GGG | 0.335808 | 8_2:+46713069 | None:intergenic |
| CTCTCAAAAGCCTCTTCTAA+TGG | 0.341934 | 8_2:+46712730 | None:intergenic |
| CTAAGATGATATCTGAATCT+AGG | 0.344853 | 8_2:+46713100 | None:intergenic |
| TTTATAAACATCACCTTCTC+TGG | 0.349912 | 8_2:+46712631 | None:intergenic |
| AGTGAAACAAACATGTCTTT+AGG | 0.355827 | 8_2:+46712799 | None:intergenic |
| CATAATCTTTGTCACTATAA+AGG | 0.357838 | 8_2:+46712938 | None:intergenic |
| TCTTGTACCTAAATACTTGC+AGG | 0.394811 | 8_2:-46713274 | Msa1251040:CDS |
| GATTCTTCTTCATTGGAGAA+TGG | 0.413955 | 8_2:+46712544 | None:intergenic |
| TTAGTTACCGCTCCCAAATC+AGG | 0.417298 | 8_2:-46713081 | Msa1251040:CDS |
| AACACCTGTTGCTACTCTTC+CGG | 0.418445 | 8_2:+46712450 | None:intergenic |
| GCTGTGGCCAAGTCGGAGAT+TGG | 0.420103 | 8_2:-46712408 | Msa1251040:CDS |
| TCCTAATACATGCTCCCAAA+AGG | 0.430142 | 8_2:+46712678 | None:intergenic |
| AGGATATTGGAAGGAAAGCT+TGG | 0.445940 | 8_2:-46712659 | Msa1251040:CDS |
| AAGACATGTTTGTTTCACTT+TGG | 0.453802 | 8_2:-46712795 | Msa1251040:CDS |
| TAAGATGATATCTGAATCTA+GGG | 0.463673 | 8_2:+46713101 | None:intergenic |
| TGTGTGGAGAAGAGTCTTGG+AGG | 0.474226 | 8_2:+46712892 | None:intergenic |
| CACTATCACCGAAAATAAAG+TGG | 0.478259 | 8_2:-46712347 | Msa1251040:CDS |
| TATATCATCAACCATGCCCT+TGG | 0.479593 | 8_2:+46712522 | None:intergenic |
| TCCCACACTCATCAATATCA+AGG | 0.480214 | 8_2:-46713183 | Msa1251040:CDS |
| GTTGATATCCACCTTGCCAT+TGG | 0.490567 | 8_2:-46713223 | Msa1251040:CDS |
| TGAGAACTTGAGCAACTTGG+AGG | 0.492399 | 8_2:-46712482 | Msa1251040:CDS |
| GAAAATAAAGTGGGTAAACA+TGG | 0.493210 | 8_2:-46712337 | Msa1251040:CDS |
| TTGGAGGAGATAAAGAGTTA+AGG | 0.499984 | 8_2:+46712908 | None:intergenic |
| GGAGATAAAGAGTTAAGGTC+AGG | 0.512452 | 8_2:+46712913 | None:intergenic |
| AACTTGGAGGTCAACAAGAC+CGG | 0.513880 | 8_2:-46712469 | Msa1251040:CDS |
| GAATATTTGGATACTTGTTG+CGG | 0.516976 | 8_2:+46713019 | None:intergenic |
| ATAAAGGTCAATTTCCAAGA+AGG | 0.522644 | 8_2:+46712954 | None:intergenic |
| CCTAATACATGCTCCCAAAA+GGG | 0.526000 | 8_2:+46712679 | None:intergenic |
| TTCATCACTTAATTCTGCCA+TGG | 0.537127 | 8_2:+46713302 | None:intergenic |
| CTCCCAAATCAGGTACCACT+TGG | 0.546400 | 8_2:-46713071 | Msa1251040:CDS |
| GGGAACAAGAGCATGAGGGT+TGG | 0.547139 | 8_2:+46712975 | None:intergenic |
| ATGAGTGTGGGATAAAATCC+AGG | 0.549497 | 8_2:+46713194 | None:intergenic |
| AAGACCGGAAGAGTAGCAAC+AGG | 0.551206 | 8_2:-46712454 | Msa1251040:CDS |
| AAAGCCTCTTCTAATGGAAG+TGG | 0.551607 | 8_2:+46712736 | None:intergenic |
| CTCCAATGAAGAAGAATCCA+AGG | 0.560806 | 8_2:-46712539 | Msa1251040:CDS |
| ATATGTGTGGAGAAGAGTCT+TGG | 0.570405 | 8_2:+46712889 | None:intergenic |
| TAAAGGTCAATTTCCAAGAA+GGG | 0.570918 | 8_2:+46712955 | None:intergenic |
| TCCTTGATATTGATGAGTGT+GGG | 0.585586 | 8_2:+46713182 | None:intergenic |
| AAGCTTGGAAAGGCCAGAGA+AGG | 0.595580 | 8_2:-46712644 | Msa1251040:CDS |
| TGACTTAAGCCAAGAATGCA+AGG | 0.597377 | 8_2:-46713247 | Msa1251040:CDS |
| GGTTGGAAGTGAGCAAAGCA+TGG | 0.600406 | 8_2:+46712992 | None:intergenic |
| AGGACCACTTCCATTAGAAG+AGG | 0.602220 | 8_2:-46712740 | Msa1251040:CDS |
| TGAAGAAGAATCCAAGGGCA+TGG | 0.602522 | 8_2:-46712533 | Msa1251040:CDS |
| AAGAAGGGAACAAGAGCATG+AGG | 0.605363 | 8_2:+46712970 | None:intergenic |
| ACTTTGGCATTTCTCAAACA+AGG | 0.607779 | 8_2:-46712779 | Msa1251040:CDS |
| GAAAGAGACAAACTGTAAAG+TGG | 0.612789 | 8_2:-46712839 | Msa1251040:CDS |
| ATCCTTGATATTGATGAGTG+TGG | 0.613449 | 8_2:+46713181 | None:intergenic |
| AGTCAATGCTTTAAGCCAAG+TGG | 0.615961 | 8_2:+46713056 | None:intergenic |
| AAGGTAAGAGCACAAAGTAG+AGG | 0.616375 | 8_2:-46712760 | Msa1251040:CDS |
| AAAATAAAGTGGGTAAACAT+GGG | 0.621517 | 8_2:-46712336 | Msa1251040:CDS |
| CAAAACATATGGAATATGTG+TGG | 0.621592 | 8_2:+46712876 | None:intergenic |
| GCATGTATTAGGATATTGGA+AGG | 0.624163 | 8_2:-46712668 | Msa1251040:CDS |
| TCTGACAAGATAAAACACCT+TGG | 0.628186 | 8_2:+46713136 | None:intergenic |
| AGTGGTACCTGATTTGGGAG+CGG | 0.637866 | 8_2:+46713074 | None:intergenic |
| TCCAATGAAGAAGAATCCAA+GGG | 0.650057 | 8_2:-46712538 | Msa1251040:CDS |
| ACTATCACCGAAAATAAAGT+GGG | 0.651764 | 8_2:-46712346 | Msa1251040:CDS |
| ATTGGAAGGAAAGCTTGGAA+AGG | 0.672349 | 8_2:-46712654 | Msa1251040:CDS |
| AGAAGGGAACAAGAGCATGA+GGG | 0.677902 | 8_2:+46712971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTCAAATAAAAACT+AGG | + | chr8_2:46713041-46713060 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCAAATAAAAACT+AGG | + | chr8_2:46713041-46713060 | None:intergenic | 10.0% |
| !!! | AAAAAAATTGCTGAGTTTTT+GGG | - | chr8_2:46713053-46713072 | Msa1251040:CDS | 20.0% |
| !!! | AAAAAAATTGCTGAGTTTTT+GGG | - | chr8_2:46713053-46713072 | Msa1251040:CDS | 20.0% |
| ! | TAAGATGATATCTGAATCTA+GGG | + | chr8_2:46712526-46712545 | None:intergenic | 25.0% |
| !!! | AAAGCATGGTTTTGAATATT+TGG | + | chr8_2:46712621-46712640 | None:intergenic | 25.0% |
| ! | CATAATCTTTGTCACTATAA+AGG | + | chr8_2:46712689-46712708 | None:intergenic | 25.0% |
| !! | GAAAAAAATTGCTGAGTTTT+TGG | - | chr8_2:46713052-46713071 | Msa1251040:CDS | 25.0% |
| !!! | ATGTTTACCCACTTTATTTT+CGG | + | chr8_2:46713288-46713307 | None:intergenic | 25.0% |
| ! | AAAATAAAGTGGGTAAACAT+GGG | - | chr8_2:46713288-46713307 | Msa1251040:CDS | 25.0% |
| ! | TAAGATGATATCTGAATCTA+GGG | + | chr8_2:46712526-46712545 | None:intergenic | 25.0% |
| !!! | AAAGCATGGTTTTGAATATT+TGG | + | chr8_2:46712621-46712640 | None:intergenic | 25.0% |
| ! | CATAATCTTTGTCACTATAA+AGG | + | chr8_2:46712689-46712708 | None:intergenic | 25.0% |
| !! | GAAAAAAATTGCTGAGTTTT+TGG | - | chr8_2:46713052-46713071 | Msa1251040:CDS | 25.0% |
| !!! | ATGTTTACCCACTTTATTTT+CGG | + | chr8_2:46713288-46713307 | None:intergenic | 25.0% |
| ! | AAAATAAAGTGGGTAAACAT+GGG | - | chr8_2:46713288-46713307 | Msa1251040:CDS | 25.0% |
| ! | CTCATCAATATCAAGGATTT+TGG | - | chr8_2:46712448-46712467 | Msa1251040:CDS | 30.0% |
| CTAAGATGATATCTGAATCT+AGG | + | chr8_2:46712527-46712546 | None:intergenic | 30.0% | |
| ! | GAATATTTGGATACTTGTTG+CGG | + | chr8_2:46712608-46712627 | None:intergenic | 30.0% |
| TAAAGGTCAATTTCCAAGAA+GGG | + | chr8_2:46712672-46712691 | None:intergenic | 30.0% | |
| ATAAAGGTCAATTTCCAAGA+AGG | + | chr8_2:46712673-46712692 | None:intergenic | 30.0% | |
| CAAAACATATGGAATATGTG+TGG | + | chr8_2:46712751-46712770 | None:intergenic | 30.0% | |
| !! | GATTTTGGCAACAAAACATA+TGG | + | chr8_2:46712762-46712781 | None:intergenic | 30.0% |
| ! | TTTGTCTCTTTCACAGATTT+TGG | + | chr8_2:46712777-46712796 | None:intergenic | 30.0% |
| AGTGAAACAAACATGTCTTT+AGG | + | chr8_2:46712828-46712847 | None:intergenic | 30.0% | |
| AAGACATGTTTGTTTCACTT+TGG | - | chr8_2:46712829-46712848 | Msa1251040:CDS | 30.0% | |
| TTTATAAACATCACCTTCTC+TGG | + | chr8_2:46712996-46713015 | None:intergenic | 30.0% | |
| !!! | AATAAAGCTTTTTTTCGCTG+TGG | - | chr8_2:46713200-46713219 | Msa1251040:CDS | 30.0% |
| ACTATCACCGAAAATAAAGT+GGG | - | chr8_2:46713278-46713297 | Msa1251040:CDS | 30.0% | |
| GAAAATAAAGTGGGTAAACA+TGG | - | chr8_2:46713287-46713306 | Msa1251040:CDS | 30.0% | |
| ! | CTCATCAATATCAAGGATTT+TGG | - | chr8_2:46712448-46712467 | Msa1251040:CDS | 30.0% |
| CTAAGATGATATCTGAATCT+AGG | + | chr8_2:46712527-46712546 | None:intergenic | 30.0% | |
| ! | GAATATTTGGATACTTGTTG+CGG | + | chr8_2:46712608-46712627 | None:intergenic | 30.0% |
| TAAAGGTCAATTTCCAAGAA+GGG | + | chr8_2:46712672-46712691 | None:intergenic | 30.0% | |
| ATAAAGGTCAATTTCCAAGA+AGG | + | chr8_2:46712673-46712692 | None:intergenic | 30.0% | |
| CAAAACATATGGAATATGTG+TGG | + | chr8_2:46712751-46712770 | None:intergenic | 30.0% | |
| !! | GATTTTGGCAACAAAACATA+TGG | + | chr8_2:46712762-46712781 | None:intergenic | 30.0% |
| ! | TTTGTCTCTTTCACAGATTT+TGG | + | chr8_2:46712777-46712796 | None:intergenic | 30.0% |
| AGTGAAACAAACATGTCTTT+AGG | + | chr8_2:46712828-46712847 | None:intergenic | 30.0% | |
| AAGACATGTTTGTTTCACTT+TGG | - | chr8_2:46712829-46712848 | Msa1251040:CDS | 30.0% | |
| TTTATAAACATCACCTTCTC+TGG | + | chr8_2:46712996-46713015 | None:intergenic | 30.0% | |
| !!! | AATAAAGCTTTTTTTCGCTG+TGG | - | chr8_2:46713200-46713219 | Msa1251040:CDS | 30.0% |
| ACTATCACCGAAAATAAAGT+GGG | - | chr8_2:46713278-46713297 | Msa1251040:CDS | 30.0% | |
| GAAAATAAAGTGGGTAAACA+TGG | - | chr8_2:46713287-46713306 | Msa1251040:CDS | 30.0% | |
| TCTTGTACCTAAATACTTGC+AGG | - | chr8_2:46712350-46712369 | Msa1251040:CDS | 35.0% | |
| TCATCATCCTGCAAGTATTT+AGG | + | chr8_2:46712360-46712379 | None:intergenic | 35.0% | |
| ATATCAACTCCTTGCATTCT+TGG | + | chr8_2:46712389-46712408 | None:intergenic | 35.0% | |
| !! | AAAATCCAGGCTTTTTCCAA+TGG | + | chr8_2:46712420-46712439 | None:intergenic | 35.0% |
| TCCTTGATATTGATGAGTGT+GGG | + | chr8_2:46712445-46712464 | None:intergenic | 35.0% | |
| ATCCTTGATATTGATGAGTG+TGG | + | chr8_2:46712446-46712465 | None:intergenic | 35.0% | |
| ATTGCCACAAAAATTCTCCA+AGG | - | chr8_2:46712471-46712490 | Msa1251040:CDS | 35.0% | |
| ! | AACACCTTGGAGAATTTTTG+TGG | + | chr8_2:46712478-46712497 | None:intergenic | 35.0% |
| TCTGACAAGATAAAACACCT+TGG | + | chr8_2:46712491-46712510 | None:intergenic | 35.0% | |
| TTGGAGGAGATAAAGAGTTA+AGG | + | chr8_2:46712719-46712738 | None:intergenic | 35.0% | |
| GAAAGAGACAAACTGTAAAG+TGG | - | chr8_2:46712785-46712804 | Msa1251040:CDS | 35.0% | |
| ACTTTGGCATTTCTCAAACA+AGG | - | chr8_2:46712845-46712864 | Msa1251040:CDS | 35.0% | |
| !! | GCTTTTGAGAGTTTTTGTAG+AGG | - | chr8_2:46712906-46712925 | Msa1251040:CDS | 35.0% |
| GCATGTATTAGGATATTGGA+AGG | - | chr8_2:46712956-46712975 | Msa1251040:CDS | 35.0% | |
| GATTCTTCTTCATTGGAGAA+TGG | + | chr8_2:46713083-46713102 | None:intergenic | 35.0% | |
| TCCAATGAAGAAGAATCCAA+GGG | - | chr8_2:46713086-46713105 | Msa1251040:CDS | 35.0% | |
| !! | TTTTGAGAACTTGAGCAACT+TGG | - | chr8_2:46713139-46713158 | Msa1251040:CDS | 35.0% |
| !!! | CGATCATTTTAGTTGTGAGA+AGG | + | chr8_2:46713247-46713266 | None:intergenic | 35.0% |
| CACTATCACCGAAAATAAAG+TGG | - | chr8_2:46713277-46713296 | Msa1251040:CDS | 35.0% | |
| TCTTGTACCTAAATACTTGC+AGG | - | chr8_2:46712350-46712369 | Msa1251040:CDS | 35.0% | |
| TCATCATCCTGCAAGTATTT+AGG | + | chr8_2:46712360-46712379 | None:intergenic | 35.0% | |
| ATATCAACTCCTTGCATTCT+TGG | + | chr8_2:46712389-46712408 | None:intergenic | 35.0% | |
| !! | AAAATCCAGGCTTTTTCCAA+TGG | + | chr8_2:46712420-46712439 | None:intergenic | 35.0% |
| TCCTTGATATTGATGAGTGT+GGG | + | chr8_2:46712445-46712464 | None:intergenic | 35.0% | |
| ATCCTTGATATTGATGAGTG+TGG | + | chr8_2:46712446-46712465 | None:intergenic | 35.0% | |
| ATTGCCACAAAAATTCTCCA+AGG | - | chr8_2:46712471-46712490 | Msa1251040:CDS | 35.0% | |
| ! | AACACCTTGGAGAATTTTTG+TGG | + | chr8_2:46712478-46712497 | None:intergenic | 35.0% |
| TCTGACAAGATAAAACACCT+TGG | + | chr8_2:46712491-46712510 | None:intergenic | 35.0% | |
| TTGGAGGAGATAAAGAGTTA+AGG | + | chr8_2:46712719-46712738 | None:intergenic | 35.0% | |
| GAAAGAGACAAACTGTAAAG+TGG | - | chr8_2:46712785-46712804 | Msa1251040:CDS | 35.0% | |
| ACTTTGGCATTTCTCAAACA+AGG | - | chr8_2:46712845-46712864 | Msa1251040:CDS | 35.0% | |
| !! | GCTTTTGAGAGTTTTTGTAG+AGG | - | chr8_2:46712906-46712925 | Msa1251040:CDS | 35.0% |
| GCATGTATTAGGATATTGGA+AGG | - | chr8_2:46712956-46712975 | Msa1251040:CDS | 35.0% | |
| GATTCTTCTTCATTGGAGAA+TGG | + | chr8_2:46713083-46713102 | None:intergenic | 35.0% | |
| TCCAATGAAGAAGAATCCAA+GGG | - | chr8_2:46713086-46713105 | Msa1251040:CDS | 35.0% | |
| !! | TTTTGAGAACTTGAGCAACT+TGG | - | chr8_2:46713139-46713158 | Msa1251040:CDS | 35.0% |
| !!! | CGATCATTTTAGTTGTGAGA+AGG | + | chr8_2:46713247-46713266 | None:intergenic | 35.0% |
| CACTATCACCGAAAATAAAG+TGG | - | chr8_2:46713277-46713296 | Msa1251040:CDS | 35.0% | |
| TGACTTAAGCCAAGAATGCA+AGG | - | chr8_2:46712377-46712396 | Msa1251040:CDS | 40.0% | |
| ATGAGTGTGGGATAAAATCC+AGG | + | chr8_2:46712433-46712452 | None:intergenic | 40.0% | |
| TCCCACACTCATCAATATCA+AGG | - | chr8_2:46712441-46712460 | Msa1251040:CDS | 40.0% | |
| ! | AGTCAATGCTTTAAGCCAAG+TGG | + | chr8_2:46712571-46712590 | None:intergenic | 40.0% |
| GGAGATAAAGAGTTAAGGTC+AGG | + | chr8_2:46712714-46712733 | None:intergenic | 40.0% | |
| ATATGTGTGGAGAAGAGTCT+TGG | + | chr8_2:46712738-46712757 | None:intergenic | 40.0% | |
| ! | AAGGTAAGAGCACAAAGTAG+AGG | - | chr8_2:46712864-46712883 | Msa1251040:CDS | 40.0% |
| AAAGCCTCTTCTAATGGAAG+TGG | + | chr8_2:46712891-46712910 | None:intergenic | 40.0% | |
| CTCTCAAAAGCCTCTTCTAA+TGG | + | chr8_2:46712897-46712916 | None:intergenic | 40.0% | |
| TGTAGAGGAGTGAGTTCTTA+TGG | - | chr8_2:46712921-46712940 | Msa1251040:CDS | 40.0% | |
| ! | TGAGTTCTTATGGACCCTTT+TGG | - | chr8_2:46712931-46712950 | Msa1251040:CDS | 40.0% |
| ! | GAGTTCTTATGGACCCTTTT+GGG | - | chr8_2:46712932-46712951 | Msa1251040:CDS | 40.0% |
| CCTAATACATGCTCCCAAAA+GGG | + | chr8_2:46712948-46712967 | None:intergenic | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | + | chr8_2:46712949-46712968 | None:intergenic | 40.0% | |
| ! | GGGAGCATGTATTAGGATAT+TGG | - | chr8_2:46712952-46712971 | Msa1251040:CDS | 40.0% |
| AGGATATTGGAAGGAAAGCT+TGG | - | chr8_2:46712965-46712984 | Msa1251040:CDS | 40.0% | |
| ATTGGAAGGAAAGCTTGGAA+AGG | - | chr8_2:46712970-46712989 | Msa1251040:CDS | 40.0% | |
| CTCCAATGAAGAAGAATCCA+AGG | - | chr8_2:46713085-46713104 | Msa1251040:CDS | 40.0% | |
| TATATCATCAACCATGCCCT+TGG | + | chr8_2:46713105-46713124 | None:intergenic | 40.0% | |
| TGACTTAAGCCAAGAATGCA+AGG | - | chr8_2:46712377-46712396 | Msa1251040:CDS | 40.0% | |
| ATGAGTGTGGGATAAAATCC+AGG | + | chr8_2:46712433-46712452 | None:intergenic | 40.0% | |
| TCCCACACTCATCAATATCA+AGG | - | chr8_2:46712441-46712460 | Msa1251040:CDS | 40.0% | |
| ! | AGTCAATGCTTTAAGCCAAG+TGG | + | chr8_2:46712571-46712590 | None:intergenic | 40.0% |
| GGAGATAAAGAGTTAAGGTC+AGG | + | chr8_2:46712714-46712733 | None:intergenic | 40.0% | |
| ATATGTGTGGAGAAGAGTCT+TGG | + | chr8_2:46712738-46712757 | None:intergenic | 40.0% | |
| ! | AAGGTAAGAGCACAAAGTAG+AGG | - | chr8_2:46712864-46712883 | Msa1251040:CDS | 40.0% |
| AAAGCCTCTTCTAATGGAAG+TGG | + | chr8_2:46712891-46712910 | None:intergenic | 40.0% | |
| CTCTCAAAAGCCTCTTCTAA+TGG | + | chr8_2:46712897-46712916 | None:intergenic | 40.0% | |
| TGTAGAGGAGTGAGTTCTTA+TGG | - | chr8_2:46712921-46712940 | Msa1251040:CDS | 40.0% | |
| ! | TGAGTTCTTATGGACCCTTT+TGG | - | chr8_2:46712931-46712950 | Msa1251040:CDS | 40.0% |
| ! | GAGTTCTTATGGACCCTTTT+GGG | - | chr8_2:46712932-46712951 | Msa1251040:CDS | 40.0% |
| CCTAATACATGCTCCCAAAA+GGG | + | chr8_2:46712948-46712967 | None:intergenic | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | + | chr8_2:46712949-46712968 | None:intergenic | 40.0% | |
| ! | GGGAGCATGTATTAGGATAT+TGG | - | chr8_2:46712952-46712971 | Msa1251040:CDS | 40.0% |
| AGGATATTGGAAGGAAAGCT+TGG | - | chr8_2:46712965-46712984 | Msa1251040:CDS | 40.0% | |
| ATTGGAAGGAAAGCTTGGAA+AGG | - | chr8_2:46712970-46712989 | Msa1251040:CDS | 40.0% | |
| CTCCAATGAAGAAGAATCCA+AGG | - | chr8_2:46713085-46713104 | Msa1251040:CDS | 40.0% | |
| TATATCATCAACCATGCCCT+TGG | + | chr8_2:46713105-46713124 | None:intergenic | 40.0% | |
| GTTGATATCCACCTTGCCAT+TGG | - | chr8_2:46712401-46712420 | Msa1251040:CDS | 45.0% | |
| TTAGTTACCGCTCCCAAATC+AGG | - | chr8_2:46712543-46712562 | Msa1251040:CDS | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | + | chr8_2:46712558-46712577 | None:intergenic | 45.0% | |
| AAGCCAAGTGGTACCTGATT+TGG | + | chr8_2:46712559-46712578 | None:intergenic | 45.0% | |
| ! | AGAAGGGAACAAGAGCATGA+GGG | + | chr8_2:46712656-46712675 | None:intergenic | 45.0% |
| ! | AAGAAGGGAACAAGAGCATG+AGG | + | chr8_2:46712657-46712676 | None:intergenic | 45.0% |
| TCATGCTCTTGTTCCCTTCT+TGG | - | chr8_2:46712656-46712675 | Msa1251040:CDS | 45.0% | |
| AGGACCACTTCCATTAGAAG+AGG | - | chr8_2:46712884-46712903 | Msa1251040:CDS | 45.0% | |
| !! | CCCTTTTGGGAGCATGTATT+AGG | - | chr8_2:46712945-46712964 | Msa1251040:CDS | 45.0% |
| GCCCTTGGATTCTTCTTCAT+TGG | + | chr8_2:46713090-46713109 | None:intergenic | 45.0% | |
| TGAAGAAGAATCCAAGGGCA+TGG | - | chr8_2:46713091-46713110 | Msa1251040:CDS | 45.0% | |
| TGAGAACTTGAGCAACTTGG+AGG | - | chr8_2:46713142-46713161 | Msa1251040:CDS | 45.0% | |
| AACTTGGAGGTCAACAAGAC+CGG | - | chr8_2:46713155-46713174 | Msa1251040:CDS | 45.0% | |
| AACACCTGTTGCTACTCTTC+CGG | + | chr8_2:46713177-46713196 | None:intergenic | 45.0% | |
| !!! | TTTTTTCGCTGTGGCCAAGT+CGG | - | chr8_2:46713209-46713228 | Msa1251040:CDS | 45.0% |
| ! | GGTTTTTCCAATCTCCGACT+TGG | + | chr8_2:46713226-46713245 | None:intergenic | 45.0% |
| GTTGATATCCACCTTGCCAT+TGG | - | chr8_2:46712401-46712420 | Msa1251040:CDS | 45.0% | |
| TTAGTTACCGCTCCCAAATC+AGG | - | chr8_2:46712543-46712562 | Msa1251040:CDS | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | + | chr8_2:46712558-46712577 | None:intergenic | 45.0% | |
| AAGCCAAGTGGTACCTGATT+TGG | + | chr8_2:46712559-46712578 | None:intergenic | 45.0% | |
| ! | AGAAGGGAACAAGAGCATGA+GGG | + | chr8_2:46712656-46712675 | None:intergenic | 45.0% |
| ! | AAGAAGGGAACAAGAGCATG+AGG | + | chr8_2:46712657-46712676 | None:intergenic | 45.0% |
| TCATGCTCTTGTTCCCTTCT+TGG | - | chr8_2:46712656-46712675 | Msa1251040:CDS | 45.0% | |
| AGGACCACTTCCATTAGAAG+AGG | - | chr8_2:46712884-46712903 | Msa1251040:CDS | 45.0% | |
| !! | CCCTTTTGGGAGCATGTATT+AGG | - | chr8_2:46712945-46712964 | Msa1251040:CDS | 45.0% |
| GCCCTTGGATTCTTCTTCAT+TGG | + | chr8_2:46713090-46713109 | None:intergenic | 45.0% | |
| TGAAGAAGAATCCAAGGGCA+TGG | - | chr8_2:46713091-46713110 | Msa1251040:CDS | 45.0% | |
| TGAGAACTTGAGCAACTTGG+AGG | - | chr8_2:46713142-46713161 | Msa1251040:CDS | 45.0% | |
| AACTTGGAGGTCAACAAGAC+CGG | - | chr8_2:46713155-46713174 | Msa1251040:CDS | 45.0% | |
| AACACCTGTTGCTACTCTTC+CGG | + | chr8_2:46713177-46713196 | None:intergenic | 45.0% | |
| !!! | TTTTTTCGCTGTGGCCAAGT+CGG | - | chr8_2:46713209-46713228 | Msa1251040:CDS | 45.0% |
| ! | GGTTTTTCCAATCTCCGACT+TGG | + | chr8_2:46713226-46713245 | None:intergenic | 45.0% |
| !! | GGCTTTTTCCAATGGCAAGG+TGG | + | chr8_2:46712412-46712431 | None:intergenic | 50.0% |
| !! | CCAGGCTTTTTCCAATGGCA+AGG | + | chr8_2:46712415-46712434 | None:intergenic | 50.0% |
| CCTTGCCATTGGAAAAAGCC+TGG | - | chr8_2:46712412-46712431 | Msa1251040:CDS | 50.0% | |
| !! | AGTGGTACCTGATTTGGGAG+CGG | + | chr8_2:46712553-46712572 | None:intergenic | 50.0% |
| CTCCCAAATCAGGTACCACT+TGG | - | chr8_2:46712553-46712572 | Msa1251040:CDS | 50.0% | |
| GGTTGGAAGTGAGCAAAGCA+TGG | + | chr8_2:46712635-46712654 | None:intergenic | 50.0% | |
| TGTGTGGAGAAGAGTCTTGG+AGG | + | chr8_2:46712735-46712754 | None:intergenic | 50.0% | |
| AAGCTTGGAAAGGCCAGAGA+AGG | - | chr8_2:46712980-46712999 | Msa1251040:CDS | 50.0% | |
| AAGACCGGAAGAGTAGCAAC+AGG | - | chr8_2:46713170-46713189 | Msa1251040:CDS | 50.0% | |
| !! | GGCTTTTTCCAATGGCAAGG+TGG | + | chr8_2:46712412-46712431 | None:intergenic | 50.0% |
| !! | CCAGGCTTTTTCCAATGGCA+AGG | + | chr8_2:46712415-46712434 | None:intergenic | 50.0% |
| CCTTGCCATTGGAAAAAGCC+TGG | - | chr8_2:46712412-46712431 | Msa1251040:CDS | 50.0% | |
| !! | AGTGGTACCTGATTTGGGAG+CGG | + | chr8_2:46712553-46712572 | None:intergenic | 50.0% |
| CTCCCAAATCAGGTACCACT+TGG | - | chr8_2:46712553-46712572 | Msa1251040:CDS | 50.0% | |
| GGTTGGAAGTGAGCAAAGCA+TGG | + | chr8_2:46712635-46712654 | None:intergenic | 50.0% | |
| TGTGTGGAGAAGAGTCTTGG+AGG | + | chr8_2:46712735-46712754 | None:intergenic | 50.0% | |
| AAGCTTGGAAAGGCCAGAGA+AGG | - | chr8_2:46712980-46712999 | Msa1251040:CDS | 50.0% | |
| AAGACCGGAAGAGTAGCAAC+AGG | - | chr8_2:46713170-46713189 | Msa1251040:CDS | 50.0% | |
| ! | GGGAACAAGAGCATGAGGGT+TGG | + | chr8_2:46712652-46712671 | None:intergenic | 55.0% |
| ! | GGGAACAAGAGCATGAGGGT+TGG | + | chr8_2:46712652-46712671 | None:intergenic | 55.0% |
| GCTGTGGCCAAGTCGGAGAT+TGG | - | chr8_2:46713216-46713235 | Msa1251040:CDS | 60.0% | |
| GCTGTGGCCAAGTCGGAGAT+TGG | - | chr8_2:46713216-46713235 | Msa1251040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 46712324 | 46713322 | 46712324 | ID=Msa1251040;Name=Msa1251040 |
| chr8_2 | mRNA | 46712324 | 46713322 | 46712324 | ID=Msa1251040-mRNA-1;Parent=Msa1251040;Name=Msa1251040-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|332 |
| chr8_2 | exon | 46712324 | 46713322 | 46712324 | ID=Msa1251040-mRNA-1:exon:14116;Parent=Msa1251040-mRNA-1 |
| chr8_2 | CDS | 46712324 | 46713322 | 46712324 | ID=Msa1251040-mRNA-1:cds;Parent=Msa1251040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
