Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197300 | XP_039684627.1 | 95.167 | 269 | 12 | 1 | 1 | 269 | 1 | 268 | 7.22e-178 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197300 | sp|Q9LI61|AVT6A_ARATH | 58.647 | 266 | 93 | 3 | 4 | 269 | 12 | 260 | 6.24e-99 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1137570 | Msa1197300 | 0.805105 | 1.567138e-49 | -8.615850e-47 |
| Msa1197290 | Msa1197300 | 0.849422 | 3.267906e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197300 | MtrunA17_Chr8g0366021 | 92.937 | 269 | 14 | 3 | 1 | 269 | 1 | 264 | 7.18e-172 | 490 |
| Msa1197300 | MtrunA17_Chr8g0365971 | 92.271 | 207 | 15 | 1 | 1 | 207 | 1 | 206 | 5.12e-133 | 382 |
| Msa1197300 | MtrunA17_Chr7g0220531 | 56.589 | 258 | 99 | 2 | 12 | 269 | 22 | 266 | 2.84e-93 | 290 |
| Msa1197300 | MtrunA17_Chr8g0365991 | 89.375 | 160 | 12 | 3 | 1 | 160 | 1 | 155 | 2.08e-90 | 272 |
| Msa1197300 | MtrunA17_Chr6g0455911 | 54.023 | 261 | 107 | 1 | 9 | 269 | 10 | 257 | 6.58e-82 | 260 |
| Msa1197300 | MtrunA17_Chr6g0455981 | 56.579 | 228 | 99 | 0 | 42 | 269 | 32 | 259 | 1.71e-79 | 254 |
| Msa1197300 | MtrunA17_Chr6g0455951 | 54.065 | 246 | 112 | 1 | 24 | 269 | 17 | 261 | 2.11e-76 | 246 |
| Msa1197300 | MtrunA17_Chr6g0455941 | 51.515 | 264 | 113 | 3 | 6 | 269 | 16 | 264 | 2.32e-70 | 230 |
| Msa1197300 | MtrunA17_Chr2g0333321 | 46.262 | 214 | 111 | 1 | 56 | 269 | 79 | 288 | 8.26e-60 | 203 |
| Msa1197300 | MtrunA17_Chr3g0114351 | 47.162 | 229 | 119 | 1 | 53 | 279 | 25 | 253 | 8.59e-59 | 199 |
| Msa1197300 | MtrunA17_Chr5g0437951 | 40.316 | 253 | 141 | 3 | 17 | 269 | 7 | 249 | 1.08e-55 | 191 |
| Msa1197300 | MtrunA17_Chr5g0437961 | 44.493 | 227 | 126 | 0 | 43 | 269 | 10 | 236 | 2.84e-55 | 189 |
| Msa1197300 | MtrunA17_Chr8g0366001 | 95.588 | 68 | 3 | 0 | 202 | 269 | 4 | 71 | 5.34e-36 | 134 |
| Msa1197300 | MtrunA17_Chr3g0114341 | 41.667 | 96 | 56 | 0 | 45 | 140 | 15 | 110 | 9.50e-19 | 82.0 |
| Msa1197300 | MtrunA17_Chr6g0459871 | 55.882 | 68 | 30 | 0 | 202 | 269 | 50 | 117 | 8.01e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197300 | AT3G30390.1 | 58.647 | 266 | 93 | 3 | 4 | 269 | 12 | 260 | 6.34e-100 | 307 |
| Msa1197300 | AT3G30390.3 | 58.647 | 266 | 93 | 3 | 4 | 269 | 12 | 260 | 6.34e-100 | 307 |
| Msa1197300 | AT3G30390.2 | 58.647 | 266 | 93 | 3 | 4 | 269 | 12 | 260 | 6.34e-100 | 307 |
| Msa1197300 | AT5G38820.1 | 57.087 | 254 | 94 | 2 | 17 | 269 | 13 | 252 | 9.39e-92 | 286 |
| Msa1197300 | AT5G38820.3 | 57.087 | 254 | 94 | 2 | 17 | 269 | 13 | 252 | 9.39e-92 | 286 |
| Msa1197300 | AT5G38820.2 | 57.087 | 254 | 94 | 2 | 17 | 269 | 18 | 257 | 1.26e-91 | 286 |
| Msa1197300 | AT1G80510.1 | 45.089 | 224 | 119 | 1 | 46 | 269 | 69 | 288 | 1.23e-52 | 184 |
| Msa1197300 | AT3G56200.1 | 41.410 | 227 | 131 | 1 | 43 | 269 | 16 | 240 | 3.37e-50 | 176 |
| Msa1197300 | AT2G40420.1 | 40.991 | 222 | 130 | 1 | 49 | 269 | 21 | 242 | 4.99e-43 | 157 |
Find 101 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGTGGCTTATATGTATT+TGG | 0.095554 | 8_1:+47562688 | Msa1197300:CDS |
| TTCATTATTCTTGTTACTAT+TGG | 0.196105 | 8_1:-47559310 | None:intergenic |
| GTTGTCTACATCATCATTAT+TGG | 0.240652 | 8_1:+47559615 | Msa1197300:CDS |
| ACCTGCAGCCATGAAGGTTT+TGG | 0.243966 | 8_1:+47559404 | Msa1197300:CDS |
| TTACTGATATGACATCTATT+TGG | 0.251297 | 8_1:+47560588 | Msa1197300:CDS |
| CATTAAGCAAATCATCAATA+TGG | 0.270742 | 8_1:+47559167 | Msa1197300:exon |
| CATGATTCCAGCACCAATTA+TGG | 0.274336 | 8_1:-47559376 | None:intergenic |
| GGCTGAATCTTCATTTCGTT+CGG | 0.276250 | 8_1:+47561961 | Msa1197300:CDS |
| TGTTCTTTGGGAGCTCCTAT+TGG | 0.278858 | 8_1:+47564457 | Msa1197300:CDS |
| AATCTATCAACAACCATAAT+TGG | 0.280034 | 8_1:+47559363 | Msa1197300:CDS |
| GCATTTGTTTGTCATTATAA+TGG | 0.286812 | 8_1:+47560644 | Msa1197300:CDS |
| TCATTTCGTTCGGGTTCATT+CGG | 0.288280 | 8_1:+47561971 | Msa1197300:CDS |
| TACTGACCAAGTTTGCATTA+AGG | 0.292369 | 8_1:+47564530 | Msa1197300:CDS |
| GATTCATTAAAATATACTTC+TGG | 0.303366 | 8_1:+47560461 | Msa1197300:intron |
| CTCCATTAGGATTCTTTAAG+AGG | 0.319606 | 8_1:+47560333 | Msa1197300:CDS |
| CTCTCCCTGTGTTACAGATA+TGG | 0.326870 | 8_1:+47561744 | Msa1197300:CDS |
| CATTTCGTTCGGGTTCATTC+GGG | 0.328176 | 8_1:+47561972 | Msa1197300:CDS |
| ATTTCATTTGTTCCTGTTGT+TGG | 0.330621 | 8_1:-47559204 | None:intergenic |
| TTTGCTTACTCATACCTCTT+TGG | 0.351471 | 8_1:+47559464 | Msa1197300:CDS |
| GTTCTTTGGGAGCTCCTATT+GGG | 0.352020 | 8_1:+47564458 | Msa1197300:CDS |
| CTTGTGGTATTTGCTCCATT+AGG | 0.364037 | 8_1:+47560320 | Msa1197300:CDS |
| ATTTGGGAGATGGGGACATT+GGG | 0.375772 | 8_1:+47562705 | Msa1197300:CDS |
| GCTGAATCTTCATTTCGTTC+GGG | 0.388192 | 8_1:+47561962 | Msa1197300:CDS |
| CCTCTTTGGATATTCTTATG+AGG | 0.391118 | 8_1:+47559478 | Msa1197300:CDS |
| GATGTCATGGGATATGCTTT+TGG | 0.391393 | 8_1:+47559534 | Msa1197300:CDS |
| TACAGATATGGAGAATGCTT+TGG | 0.395339 | 8_1:+47561756 | Msa1197300:CDS |
| TTAGTGGCTTATATGTATTT+GGG | 0.400965 | 8_1:+47562689 | Msa1197300:CDS |
| ATTAAGCAAATCATCAATAT+GGG | 0.402163 | 8_1:+47559168 | Msa1197300:exon |
| ACAAATGCTGTCACAAGAAC+TGG | 0.402602 | 8_1:-47560629 | None:intergenic |
| GATGTCATATCAGTAATATT+AGG | 0.404138 | 8_1:-47560581 | None:intergenic |
| AAGCAACCTAGGACTCTCTA+TGG | 0.407093 | 8_1:-47560558 | None:intergenic |
| GTTGCTAAGGCTCAATCTTA+TGG | 0.408862 | 8_1:+47559510 | Msa1197300:CDS |
| CTGTTACAGAGAACCTGTTT+TGG | 0.415004 | 8_1:+47564401 | Msa1197300:CDS |
| CTGTCTGGAACAACTTCATC+TGG | 0.420789 | 8_1:+47560215 | Msa1197300:CDS |
| ATCCTCTTAAAGAATCCTAA+TGG | 0.422387 | 8_1:-47560335 | None:intergenic |
| GAATCAGCAGCATCATTTGC+TGG | 0.424801 | 8_1:+47559330 | Msa1197300:CDS |
| AGGCTCCAGAGGAGAATTGA+TGG | 0.426769 | 8_1:-47561719 | None:intergenic |
| GGTTAGTCCCAAAACCTTCA+TGG | 0.427937 | 8_1:-47559412 | None:intergenic |
| ACAGATATGGAGAATGCTTT+GGG | 0.431093 | 8_1:+47561757 | Msa1197300:CDS |
| ACATTTGTTAAATTGTTCAA+TGG | 0.434310 | 8_1:+47560533 | Msa1197300:CDS |
| CTTCATGGTGATAGCTCAAA+AGG | 0.440563 | 8_1:+47561911 | Msa1197300:CDS |
| CATAATTGGTGCTGGAATCA+TGG | 0.448019 | 8_1:+47559377 | Msa1197300:CDS |
| CATCACTTTGGTGTACTTGA+AGG | 0.448644 | 8_1:+47560242 | Msa1197300:CDS |
| CTTATATGTATTTGGGAGAT+GGG | 0.453023 | 8_1:+47562696 | Msa1197300:CDS |
| TTCTGGATTAGCAGTGGCTC+TGG | 0.468822 | 8_1:+47560478 | Msa1197300:CDS |
| TATTTGGGAGATGGGGACAT+TGG | 0.469371 | 8_1:+47562704 | Msa1197300:CDS |
| GGTGTACTTGAAGGATGGTT+TGG | 0.470565 | 8_1:+47560251 | Msa1197300:CDS |
| ACAGGAACAAATGAAATTGT+TGG | 0.470759 | 8_1:+47559210 | Msa1197300:CDS |
| ATTCTCCATATCTGTAACAC+AGG | 0.471102 | 8_1:-47561749 | None:intergenic |
| CGTGTGGTTAATGCTCTTCA+TGG | 0.479733 | 8_1:+47561896 | Msa1197300:CDS |
| GCTTATATGTATTTGGGAGA+TGG | 0.483741 | 8_1:+47562695 | Msa1197300:CDS |
| GGCTTTACCTGCAGCCATGA+AGG | 0.484539 | 8_1:+47559398 | Msa1197300:CDS |
| CCTCTCCATCAATTCTCCTC+TGG | 0.486039 | 8_1:+47561714 | Msa1197300:CDS |
| CCCAAAACCTTCATGGCTGC+AGG | 0.487782 | 8_1:-47559405 | None:intergenic |
| ATGGAACCATAGAGAGTCCT+AGG | 0.492735 | 8_1:+47560552 | Msa1197300:CDS |
| GCCACAATATGTACATCAAA+CGG | 0.494156 | 8_1:-47561941 | None:intergenic |
| GAAATTCAACATGGTGATGA+TGG | 0.494788 | 8_1:+47559285 | Msa1197300:CDS |
| GAGGTTTAGTAGAGTTGCTA+AGG | 0.495918 | 8_1:+47559497 | Msa1197300:CDS |
| TCTGTAACACAGGGAGAGAC+AGG | 0.499483 | 8_1:-47561739 | None:intergenic |
| TCAACAACCATAATTGGTGC+TGG | 0.499517 | 8_1:+47559369 | Msa1197300:CDS |
| TTACACAACAATCCAACAAC+AGG | 0.500653 | 8_1:+47559192 | Msa1197300:CDS |
| ACCATCGTGATACGTTTCCA+TGG | 0.505329 | 8_1:-47561785 | None:intergenic |
| GCTGAACCTTAATGCAAACT+TGG | 0.505474 | 8_1:-47564536 | None:intergenic |
| TCAATCTTATGGTGATGTCA+TGG | 0.511948 | 8_1:+47559521 | Msa1197300:CDS |
| TTAGGATTCTTTAAGAGGAT+AGG | 0.516712 | 8_1:+47560338 | Msa1197300:CDS |
| GAATGCTTTGGGACGACCCA+TGG | 0.518479 | 8_1:+47561768 | Msa1197300:CDS |
| CGAAGGTGGAGGCATAGCTA+TGG | 0.523634 | 8_1:+47564493 | Msa1197300:CDS |
| AAAGAACACCTAAAAGTGGC+TGG | 0.523899 | 8_1:-47564442 | None:intergenic |
| AACAGCGAGGAAACCTCAAC+AGG | 0.528001 | 8_1:+47561808 | Msa1197300:CDS |
| TGGGGCAGTGCTACAACAGC+TGG | 0.538613 | 8_1:+47562724 | Msa1197300:CDS |
| CAATCTTATGGTGATGTCAT+GGG | 0.540796 | 8_1:+47559522 | Msa1197300:CDS |
| AAGGATGGTTTGGCGAACAC+TGG | 0.541937 | 8_1:+47560261 | Msa1197300:CDS |
| TTGGCGAACACTGGTCGACT+GGG | 0.542705 | 8_1:+47560270 | Msa1197300:CDS |
| TCCCAAAGAACACCTAAAAG+TGG | 0.545495 | 8_1:-47564446 | None:intergenic |
| TTGTTGTTACTGACCTGTTG+AGG | 0.551843 | 8_1:-47561821 | None:intergenic |
| TCATCTGGAAGTCATCACTT+TGG | 0.554637 | 8_1:+47560230 | Msa1197300:CDS |
| ACTTTGGTGTACTTGAAGGA+TGG | 0.555582 | 8_1:+47560246 | Msa1197300:CDS |
| CAGGGAGAGACAGGCTCCAG+AGG | 0.562550 | 8_1:-47561730 | None:intergenic |
| TCTTCTTATTACAACCCTTG+TGG | 0.565549 | 8_1:+47560304 | Msa1197300:CDS |
| TTTGCAGGTGATGTACTGTC+TGG | 0.571987 | 8_1:+47560200 | Msa1197300:intron |
| CCATCGTGATACGTTTCCAT+GGG | 0.579373 | 8_1:-47561784 | None:intergenic |
| GAAGGTGGAGGCATAGCTAT+GGG | 0.584519 | 8_1:+47564494 | Msa1197300:CDS |
| TTTGGGAGATGGGGACATTG+GGG | 0.585463 | 8_1:+47562706 | Msa1197300:CDS |
| CCTCATAAGAATATCCAAAG+AGG | 0.590977 | 8_1:-47559478 | None:intergenic |
| GTAATATTAGGAAGCAACCT+AGG | 0.599021 | 8_1:-47560569 | None:intergenic |
| AGGTATGAGTAAGCAAAGCA+AGG | 0.602143 | 8_1:-47559458 | None:intergenic |
| TATGATTGAAGCAATACCAA+TGG | 0.605130 | 8_1:-47559433 | None:intergenic |
| CTAATGGAGCAAATACCACA+AGG | 0.616668 | 8_1:-47560319 | None:intergenic |
| TCCGTTTGATGTACATATTG+TGG | 0.618005 | 8_1:+47561940 | Msa1197300:CDS |
| TTATATGTATTTGGGAGATG+GGG | 0.629501 | 8_1:+47562697 | Msa1197300:CDS |
| TATCTTGATTGAATCGCGTG+TGG | 0.645447 | 8_1:+47561880 | Msa1197300:CDS |
| CCAGAGGAGAATTGATGGAG+AGG | 0.645914 | 8_1:-47561714 | None:intergenic |
| ATATACTTCTGGATTAGCAG+TGG | 0.646775 | 8_1:+47560472 | Msa1197300:CDS |
| TTAAGCAAATCATCAATATG+GGG | 0.658572 | 8_1:+47559169 | Msa1197300:exon |
| GCAGTGCTACAACAGCTGGT+AGG | 0.681742 | 8_1:+47562728 | Msa1197300:CDS |
| ATTGAAGTTGAAATTCAACA+TGG | 0.685990 | 8_1:+47559276 | Msa1197300:CDS |
| TTCTCCATATCTGTAACACA+GGG | 0.686159 | 8_1:-47561748 | None:intergenic |
| CAACAGGTCAGTAACAACAA+AGG | 0.688971 | 8_1:+47561824 | Msa1197300:CDS |
| CCCATGGAAACGTATCACGA+TGG | 0.699881 | 8_1:+47561784 | Msa1197300:CDS |
| TAATGGAGCAAATACCACAA+GGG | 0.734299 | 8_1:-47560318 | None:intergenic |
| GTATCACGATGGTAACAGCG+AGG | 0.797767 | 8_1:+47561795 | Msa1197300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAACATTTTTATAAAATG+GGG | - | chr8_1:47559964-47559983 | None:intergenic | 10.0% |
| !!! | CAATAACATTTTTATAAAAT+GGG | - | chr8_1:47559965-47559984 | None:intergenic | 10.0% |
| !!! | TCAATAACATTTTTATAAAA+TGG | - | chr8_1:47559966-47559985 | None:intergenic | 10.0% |
| !!! | TCAATTTATCTATATTTTTA+AGG | - | chr8_1:47560162-47560181 | None:intergenic | 10.0% |
| !!! | AATTTAAAGTTTAACAATAA+GGG | - | chr8_1:47560733-47560752 | None:intergenic | 10.0% |
| !!! | AAATTTAAAGTTTAACAATA+AGG | - | chr8_1:47560734-47560753 | None:intergenic | 10.0% |
| !! | TACAAAATAAAAAATTGAAA+AGG | - | chr8_1:47563578-47563597 | None:intergenic | 10.0% |
| !!! | GTTTTATTAAGTTAAAATCT+GGG | - | chr8_1:47559846-47559865 | None:intergenic | 15.0% |
| !!! | AGTTTTATTAAGTTAAAATC+TGG | - | chr8_1:47559847-47559866 | None:intergenic | 15.0% |
| !!! | ATAACATTTTTATAAAATGG+GGG | - | chr8_1:47559963-47559982 | None:intergenic | 15.0% |
| !!! | TTATCTATATTTTTAAGGAA+TGG | - | chr8_1:47560157-47560176 | None:intergenic | 15.0% |
| !!! | ATAGATAAATTGAATGTTTT+AGG | + | chr8_1:47560169-47560188 | Msa1197300:intron | 15.0% |
| !!! | TAGATAAATTGAATGTTTTA+GGG | + | chr8_1:47560170-47560189 | Msa1197300:intron | 15.0% |
| !!! | ATTTAATTTTGATACACAAT+CGG | + | chr8_1:47560750-47560769 | Msa1197300:intron | 15.0% |
| !! | TAATATTGTAAATGTATTGT+TGG | + | chr8_1:47562127-47562146 | Msa1197300:intron | 15.0% |
| !! | AATATTGTAAATGTATTGTT+GGG | + | chr8_1:47562128-47562147 | Msa1197300:intron | 15.0% |
| !!! | TTTAAATTATCTCTCTTTTT+TGG | + | chr8_1:47562395-47562414 | Msa1197300:intron | 15.0% |
| !!! | ATTTATTTAAAAAGCTTGTT+GGG | - | chr8_1:47563335-47563354 | None:intergenic | 15.0% |
| !! | TATTTATTTAAAAAGCTTGT+TGG | - | chr8_1:47563336-47563355 | None:intergenic | 15.0% |
| !! | TACAAAATAAAAAATAGAAG+AGG | - | chr8_1:47563425-47563444 | None:intergenic | 15.0% |
| !!! | TTTTAGAGATGATTTTTTTT+AGG | - | chr8_1:47564105-47564124 | None:intergenic | 15.0% |
| !! | TAAAAAAAATCATCTCTAAA+AGG | + | chr8_1:47564104-47564123 | Msa1197300:intron | 15.0% |
| !!! | AAAAAAAATCATCTCTAAAA+GGG | + | chr8_1:47564105-47564124 | Msa1197300:intron | 15.0% |
| !! | ATTAAGCAAATCATCAATAT+GGG | + | chr8_1:47559168-47559187 | Msa1197300:exon | 20.0% |
| !! | TTCATTATTCTTGTTACTAT+TGG | - | chr8_1:47559313-47559332 | None:intergenic | 20.0% |
| !! | TGTAAAATGTATTATACTGT+CGG | + | chr8_1:47559771-47559790 | Msa1197300:intron | 20.0% |
| !! | ATGAATTTAAGTATGTTACT+TGG | + | chr8_1:47560377-47560396 | Msa1197300:intron | 20.0% |
| !! | AATAATACATTTACTACATG+AGG | - | chr8_1:47560407-47560426 | None:intergenic | 20.0% |
| !! | GATTCATTAAAATATACTTC+TGG | + | chr8_1:47560461-47560480 | Msa1197300:intron | 20.0% |
| !!! | ACATTTGTTAAATTGTTCAA+TGG | + | chr8_1:47560533-47560552 | Msa1197300:CDS | 20.0% |
| !!! | TATGACTTTTATCATAACTA+TGG | - | chr8_1:47560809-47560828 | None:intergenic | 20.0% |
| !! | TGTAAACAATCTTTAACTAA+CGG | + | chr8_1:47560865-47560884 | Msa1197300:intron | 20.0% |
| !! | GCAATTTCAACAAAAATTTA+AGG | - | chr8_1:47561515-47561534 | None:intergenic | 20.0% |
| !! | AAATCAATGAAACTAAATCA+TGG | - | chr8_1:47562585-47562604 | None:intergenic | 20.0% |
| !!! | TCATATTATGTTTTTACTTG+AGG | + | chr8_1:47562848-47562867 | Msa1197300:intron | 20.0% |
| !! | AAAATCTTGAAGATAATCTT+AGG | + | chr8_1:47562944-47562963 | Msa1197300:intron | 20.0% |
| !! | AAATCTTGAAGATAATCTTA+GGG | + | chr8_1:47562945-47562964 | Msa1197300:intron | 20.0% |
| !!! | AAGTTAATTTGAGTTATTTC+TGG | + | chr8_1:47563459-47563478 | Msa1197300:intron | 20.0% |
| !!! | TAAGTTTATTTGAGTTTTTC+TGG | + | chr8_1:47563614-47563633 | Msa1197300:intron | 20.0% |
| !! | AATCTATCTTAATTCTCATT+AGG | - | chr8_1:47563706-47563725 | None:intergenic | 20.0% |
| !! | TAATGAGAATTAAGATAGAT+TGG | + | chr8_1:47563705-47563724 | Msa1197300:intron | 20.0% |
| !! | GATGTCTATATTATGTATAA+AGG | - | chr8_1:47563896-47563915 | None:intergenic | 20.0% |
| !! | TTCTATTTATAGAATTGTTG+CGG | + | chr8_1:47564203-47564222 | Msa1197300:intron | 20.0% |
| !!! | ATTTTCATATAATCACTTAG+AGG | + | chr8_1:47564316-47564335 | Msa1197300:intron | 20.0% |
| ! | CATTAAGCAAATCATCAATA+TGG | + | chr8_1:47559167-47559186 | Msa1197300:exon | 25.0% |
| ! | TTAAGCAAATCATCAATATG+GGG | + | chr8_1:47559169-47559188 | Msa1197300:exon | 25.0% |
| !! | TTCAATTTTCTCATCTGTTT+TGG | - | chr8_1:47559262-47559281 | None:intergenic | 25.0% |
| ! | ATTGAAGTTGAAATTCAACA+TGG | + | chr8_1:47559276-47559295 | Msa1197300:CDS | 25.0% |
| ! | AATCTATCAACAACCATAAT+TGG | + | chr8_1:47559363-47559382 | Msa1197300:CDS | 25.0% |
| ! | ATTCAAAGTTTCAGATTCAT+AGG | - | chr8_1:47559933-47559952 | None:intergenic | 25.0% |
| !!! | GTATATTTTAATGAATCTGC+AGG | - | chr8_1:47560458-47560477 | None:intergenic | 25.0% |
| ! | GATGTCATATCAGTAATATT+AGG | - | chr8_1:47560584-47560603 | None:intergenic | 25.0% |
| ! | TTACTGATATGACATCTATT+TGG | + | chr8_1:47560588-47560607 | Msa1197300:CDS | 25.0% |
| ! | GCATTTGTTTGTCATTATAA+TGG | + | chr8_1:47560644-47560663 | Msa1197300:CDS | 25.0% |
| ! | ATATGACGATTATGATTGAT+AGG | + | chr8_1:47560839-47560858 | Msa1197300:intron | 25.0% |
| !!! | AAAACATCTCTTTGTTTTGA+TGG | + | chr8_1:47560937-47560956 | Msa1197300:intron | 25.0% |
| ! | AAGATACAATTCACACAAAT+TGG | + | chr8_1:47560976-47560995 | Msa1197300:intron | 25.0% |
| ! | ACTAATTTCAATTCATAGTG+TGG | - | chr8_1:47561235-47561254 | None:intergenic | 25.0% |
| ! | ACATGAAGATTGAATGAATT+TGG | - | chr8_1:47561468-47561487 | None:intergenic | 25.0% |
| ! | AAATTCATTCAATCTTCATG+TGG | + | chr8_1:47561467-47561486 | Msa1197300:intron | 25.0% |
| !! | AAATTTAAGGTTGAAGTTGT+CGG | - | chr8_1:47561502-47561521 | None:intergenic | 25.0% |
| ! | ATATTTGACATTGCAATACT+AGG | + | chr8_1:47561613-47561632 | Msa1197300:intron | 25.0% |
| ! | ATATTATACAAACACCTTGT+GGG | - | chr8_1:47562162-47562181 | None:intergenic | 25.0% |
| ! | AATATTATACAAACACCTTG+TGG | - | chr8_1:47562163-47562182 | None:intergenic | 25.0% |
| ! | TTGTATAATATTCTGACTCA+AGG | + | chr8_1:47562171-47562190 | Msa1197300:intron | 25.0% |
| !!! | AAAACAACAAAACTTGTTGT+GGG | - | chr8_1:47562362-47562381 | None:intergenic | 25.0% |
| !!! | AAATTATCTCTCTTTTTTGG+TGG | + | chr8_1:47562398-47562417 | Msa1197300:intron | 25.0% |
| !! | GATTCTTTTTAGATTCTTAG+TGG | + | chr8_1:47562673-47562692 | Msa1197300:intron | 25.0% |
| ! | TTAGTGGCTTATATGTATTT+GGG | + | chr8_1:47562689-47562708 | Msa1197300:CDS | 25.0% |
| ! | TTTGAATTCTCTTACTAGAA+AGG | + | chr8_1:47562882-47562901 | Msa1197300:intron | 25.0% |
| ! | ATTCTATTCCAAAGCTATTA+AGG | + | chr8_1:47563007-47563026 | Msa1197300:intron | 25.0% |
| !!! | TGGCATGTATTTTTAAGATA+AGG | + | chr8_1:47563857-47563876 | Msa1197300:intron | 25.0% |
| !! | TTTAAGATAAGGCTATACAA+TGG | + | chr8_1:47563868-47563887 | Msa1197300:intron | 25.0% |
| ! | ATGACATTGAAAAATGTTAG+CGG | - | chr8_1:47563970-47563989 | None:intergenic | 25.0% |
| !! | AAATTGATTGAAGACTTTTC+TGG | + | chr8_1:47564032-47564051 | Msa1197300:intron | 25.0% |
| !!! | TAGAGATGATTTTTTTTAGG+TGG | - | chr8_1:47564102-47564121 | None:intergenic | 25.0% |
| ! | TTGAACTGAATTTAAATCGT+TGG | + | chr8_1:47564257-47564276 | Msa1197300:intron | 25.0% |
| !!! | ATAATCACTTAGAGGTTTTT+TGG | + | chr8_1:47564324-47564343 | Msa1197300:intron | 25.0% |
| !!! | TAATCACTTAGAGGTTTTTT+GGG | + | chr8_1:47564325-47564344 | Msa1197300:intron | 25.0% |
| ATTTCATTTGTTCCTGTTGT+TGG | - | chr8_1:47559207-47559226 | None:intergenic | 30.0% | |
| ACAGGAACAAATGAAATTGT+TGG | + | chr8_1:47559210-47559229 | Msa1197300:CDS | 30.0% | |
| TATGATTGAAGCAATACCAA+TGG | - | chr8_1:47559436-47559455 | None:intergenic | 30.0% | |
| !! | TTTTGGAAATGTTGGTAGAT+TGG | + | chr8_1:47559551-47559570 | Msa1197300:CDS | 30.0% |
| ! | TCTGTTCTTTTCAACAACTT+TGG | + | chr8_1:47559585-47559604 | Msa1197300:CDS | 30.0% |
| GTTGTCTACATCATCATTAT+TGG | + | chr8_1:47559615-47559634 | Msa1197300:CDS | 30.0% | |
| AATGTGTATATATGTGAAGC+CGG | + | chr8_1:47559985-47560004 | Msa1197300:intron | 30.0% | |
| CTCATAAGCAAAACCAATTT+CGG | - | chr8_1:47560083-47560102 | None:intergenic | 30.0% | |
| ATCCTCTTAAAGAATCCTAA+TGG | - | chr8_1:47560338-47560357 | None:intergenic | 30.0% | |
| ! | TTAGGATTCTTTAAGAGGAT+AGG | + | chr8_1:47560338-47560357 | Msa1197300:CDS | 30.0% |
| !! | TTCTGTACTTTGAAGTTACA+AGG | + | chr8_1:47561008-47561027 | Msa1197300:intron | 30.0% |
| ! | GATAAACGAAAGCTCTAATA+TGG | - | chr8_1:47561083-47561102 | None:intergenic | 30.0% |
| ATTAGAGCTTTCGTTTATCA+AGG | + | chr8_1:47561084-47561103 | Msa1197300:intron | 30.0% | |
| AAATCATTAGGAATTAGGGT+TGG | - | chr8_1:47561168-47561187 | None:intergenic | 30.0% | |
| ! | ACCCTAATTCCTAATGATTT+TGG | + | chr8_1:47561168-47561187 | Msa1197300:intron | 30.0% |
| GCCAAAATCATTAGGAATTA+GGG | - | chr8_1:47561172-47561191 | None:intergenic | 30.0% | |
| AGCCAAAATCATTAGGAATT+AGG | - | chr8_1:47561173-47561192 | None:intergenic | 30.0% | |
| ! | AATTTGGAGCCAAAATCATT+AGG | - | chr8_1:47561180-47561199 | None:intergenic | 30.0% |
| ATCAACCTAGATTGATCTAA+TGG | - | chr8_1:47561210-47561229 | None:intergenic | 30.0% | |
| TGAATGAATTTGGAGAGAAT+AGG | - | chr8_1:47561458-47561477 | None:intergenic | 30.0% | |
| TAGCACACAAACAAACATTA+AGG | - | chr8_1:47562258-47562277 | None:intergenic | 30.0% | |
| !! | CAAAACAACAAAACTTGTTG+TGG | - | chr8_1:47562363-47562382 | None:intergenic | 30.0% |
| !!! | TCTTTTTTGGTGGTCTATAA+TGG | + | chr8_1:47562408-47562427 | Msa1197300:intron | 30.0% |
| ATGCACTTATCGATGTTTAT+GGG | + | chr8_1:47562435-47562454 | Msa1197300:intron | 30.0% | |
| ATACTGTACAAAATATGCCA+AGG | - | chr8_1:47562492-47562511 | None:intergenic | 30.0% | |
| GCTTCTTAGTTGTAAAGAAT+TGG | + | chr8_1:47562634-47562653 | Msa1197300:intron | 30.0% | |
| CTTAGTGGCTTATATGTATT+TGG | + | chr8_1:47562688-47562707 | Msa1197300:CDS | 30.0% | |
| CTTATATGTATTTGGGAGAT+GGG | + | chr8_1:47562696-47562715 | Msa1197300:CDS | 30.0% | |
| TTATATGTATTTGGGAGATG+GGG | + | chr8_1:47562697-47562716 | Msa1197300:CDS | 30.0% | |
| CAATTATTGAGAGATTCCAA+AGG | - | chr8_1:47562789-47562808 | None:intergenic | 30.0% | |
| ATTGCAAACCTTAATAGCTT+TGG | - | chr8_1:47563018-47563037 | None:intergenic | 30.0% | |
| AGCATTCAAAGCTAAACATA+TGG | + | chr8_1:47563099-47563118 | Msa1197300:intron | 30.0% | |
| TAGATTGCATTAAGCTATGT+AGG | + | chr8_1:47563354-47563373 | Msa1197300:intron | 30.0% | |
| !!! | GTTATTTCTGGTCTTTTGAA+TGG | + | chr8_1:47563471-47563490 | Msa1197300:intron | 30.0% |
| TAAAGAGAACTCATCAGTAT+TGG | - | chr8_1:47563500-47563519 | None:intergenic | 30.0% | |
| !! | ATTTGAGTTTTTCTGGTCTT+TGG | + | chr8_1:47563621-47563640 | Msa1197300:intron | 30.0% |
| AAACTTCCCTTAATTGCTTT+CGG | - | chr8_1:47563770-47563789 | None:intergenic | 30.0% | |
| GTTTCAAAGTTGTTTGTCTT+TGG | + | chr8_1:47563802-47563821 | Msa1197300:intron | 30.0% | |
| CTACAGTATATTCTAACAAG+TGG | + | chr8_1:47563837-47563856 | Msa1197300:intron | 30.0% | |
| ATAAAAAGCCTAAAGGAGTA+TGG | - | chr8_1:47563945-47563964 | None:intergenic | 30.0% | |
| TGAATTTAAATCGTTGGCAT+TGG | + | chr8_1:47564263-47564282 | Msa1197300:intron | 30.0% | |
| !!! | AATCACTTAGAGGTTTTTTG+GGG | + | chr8_1:47564326-47564345 | Msa1197300:intron | 30.0% |
| TCAAGAAAAAACACCAAAAC+AGG | - | chr8_1:47564417-47564436 | None:intergenic | 30.0% | |
| TTACACAACAATCCAACAAC+AGG | + | chr8_1:47559192-47559211 | Msa1197300:CDS | 35.0% | |
| !!! | TCTGTTTTGGTTTGTAGCAA+TGG | - | chr8_1:47559249-47559268 | None:intergenic | 35.0% |
| ! | GAAATTCAACATGGTGATGA+TGG | + | chr8_1:47559285-47559304 | Msa1197300:CDS | 35.0% |
| TTTGCTTACTCATACCTCTT+TGG | + | chr8_1:47559464-47559483 | Msa1197300:CDS | 35.0% | |
| CCTCATAAGAATATCCAAAG+AGG | - | chr8_1:47559481-47559500 | None:intergenic | 35.0% | |
| CCTCTTTGGATATTCTTATG+AGG | + | chr8_1:47559478-47559497 | Msa1197300:CDS | 35.0% | |
| ! | TCAATCTTATGGTGATGTCA+TGG | + | chr8_1:47559521-47559540 | Msa1197300:CDS | 35.0% |
| ! | CAATCTTATGGTGATGTCAT+GGG | + | chr8_1:47559522-47559541 | Msa1197300:CDS | 35.0% |
| !! | GGATATGCTTTTGGAAATGT+TGG | + | chr8_1:47559543-47559562 | Msa1197300:CDS | 35.0% |
| TCAAGTCAAATGTAGCATAC+CGG | - | chr8_1:47560007-47560026 | None:intergenic | 35.0% | |
| GGAATGTGTGTGTATGATTT+CGG | - | chr8_1:47560052-47560071 | None:intergenic | 35.0% | |
| TCATACACACACATTCCTAT+TGG | + | chr8_1:47560055-47560074 | Msa1197300:intron | 35.0% | |
| ATTCCTATTGGATCCGAAAT+TGG | + | chr8_1:47560067-47560086 | Msa1197300:intron | 35.0% | |
| AAACCAATTTCGGATCCAAT+AGG | - | chr8_1:47560073-47560092 | None:intergenic | 35.0% | |
| !!! | TTTTAGGGTACTTGATTTGC+AGG | + | chr8_1:47560185-47560204 | Msa1197300:intron | 35.0% |
| TCTTCTTATTACAACCCTTG+TGG | + | chr8_1:47560304-47560323 | Msa1197300:CDS | 35.0% | |
| TAATGGAGCAAATACCACAA+GGG | - | chr8_1:47560321-47560340 | None:intergenic | 35.0% | |
| CTCCATTAGGATTCTTTAAG+AGG | + | chr8_1:47560333-47560352 | Msa1197300:CDS | 35.0% | |
| !! | ATATACTTCTGGATTAGCAG+TGG | + | chr8_1:47560472-47560491 | Msa1197300:CDS | 35.0% |
| ! | GTTTTTCTTGTCATAACTGC+AGG | + | chr8_1:47560506-47560525 | Msa1197300:CDS | 35.0% |
| GTAATATTAGGAAGCAACCT+AGG | - | chr8_1:47560572-47560591 | None:intergenic | 35.0% | |
| ! | TGAAATGAAAGTACACACTG+AGG | - | chr8_1:47560681-47560700 | None:intergenic | 35.0% |
| ! | ACAAAGAGATGTTTTGCTGA+TGG | - | chr8_1:47560932-47560951 | None:intergenic | 35.0% |
| !!! | ATTTTGGCTCCAAATTGTTC+TGG | + | chr8_1:47561184-47561203 | Msa1197300:intron | 35.0% |
| ATCTAATGGCCAGAACAATT+TGG | - | chr8_1:47561196-47561215 | None:intergenic | 35.0% | |
| TTCTCCATATCTGTAACACA+GGG | - | chr8_1:47561751-47561770 | None:intergenic | 35.0% | |
| ATTCTCCATATCTGTAACAC+AGG | - | chr8_1:47561752-47561771 | None:intergenic | 35.0% | |
| TACAGATATGGAGAATGCTT+TGG | + | chr8_1:47561756-47561775 | Msa1197300:CDS | 35.0% | |
| ACAGATATGGAGAATGCTTT+GGG | + | chr8_1:47561757-47561776 | Msa1197300:CDS | 35.0% | |
| TCCGTTTGATGTACATATTG+TGG | + | chr8_1:47561940-47561959 | Msa1197300:CDS | 35.0% | |
| GCCACAATATGTACATCAAA+CGG | - | chr8_1:47561944-47561963 | None:intergenic | 35.0% | |
| ! | CATTCGGGAATGTGAATTTT+CGG | + | chr8_1:47561987-47562006 | Msa1197300:intron | 35.0% |
| ACTACCTGAATAAAAGCCAA+GGG | - | chr8_1:47562036-47562055 | None:intergenic | 35.0% | |
| !! | TTTTTGGTGGTCTATAATGG+AGG | + | chr8_1:47562411-47562430 | Msa1197300:intron | 35.0% |
| !! | TTTTGGTGGTCTATAATGGA+GGG | + | chr8_1:47562412-47562431 | Msa1197300:intron | 35.0% |
| GATGCACTTATCGATGTTTA+TGG | + | chr8_1:47562434-47562453 | Msa1197300:intron | 35.0% | |
| GAAGAGACTTATGGTATAAG+TGG | - | chr8_1:47562470-47562489 | None:intergenic | 35.0% | |
| TATACCATAAGTCTCTTCCT+TGG | + | chr8_1:47562472-47562491 | Msa1197300:intron | 35.0% | |
| GCTTATATGTATTTGGGAGA+TGG | + | chr8_1:47562695-47562714 | Msa1197300:CDS | 35.0% | |
| AGCTAAACATATGGTTGAGA+AGG | + | chr8_1:47563108-47563127 | Msa1197300:intron | 35.0% | |
| GATAGAACATATGCAGTAAC+AGG | - | chr8_1:47563248-47563267 | None:intergenic | 35.0% | |
| ! | AAAGCCTGTATCTAAAATCG+AGG | + | chr8_1:47563299-47563318 | Msa1197300:intron | 35.0% |
| ! | AGTTCCTCGATTTTAGATAC+AGG | - | chr8_1:47563306-47563325 | None:intergenic | 35.0% |
| !! | AGTTTTTCTGGTCTTTGGAA+TGG | + | chr8_1:47563626-47563645 | Msa1197300:intron | 35.0% |
| TAGTTCCTTTGCGAAAGTTA+TGG | + | chr8_1:47563742-47563761 | Msa1197300:intron | 35.0% | |
| TCATTGAACCATACTCCTTT+AGG | + | chr8_1:47563934-47563953 | Msa1197300:intron | 35.0% | |
| TTGGTTCAGAAAATTCTCAC+TGG | + | chr8_1:47564282-47564301 | Msa1197300:intron | 35.0% | |
| TACTGACCAAGTTTGCATTA+AGG | + | chr8_1:47564530-47564549 | Msa1197300:CDS | 35.0% | |
| TCAACAACCATAATTGGTGC+TGG | + | chr8_1:47559369-47559388 | Msa1197300:CDS | 40.0% | |
| CATGATTCCAGCACCAATTA+TGG | - | chr8_1:47559379-47559398 | None:intergenic | 40.0% | |
| !! | CATAATTGGTGCTGGAATCA+TGG | + | chr8_1:47559377-47559396 | Msa1197300:CDS | 40.0% |
| !!! | AAGGTTTTGGGACTAACCAT+TGG | + | chr8_1:47559417-47559436 | Msa1197300:CDS | 40.0% |
| AGGTATGAGTAAGCAAAGCA+AGG | - | chr8_1:47559461-47559480 | None:intergenic | 40.0% | |
| GAGGTTTAGTAGAGTTGCTA+AGG | + | chr8_1:47559497-47559516 | Msa1197300:CDS | 40.0% | |
| GTTGCTAAGGCTCAATCTTA+TGG | + | chr8_1:47559510-47559529 | Msa1197300:CDS | 40.0% | |
| ! | GATGTCATGGGATATGCTTT+TGG | + | chr8_1:47559534-47559553 | Msa1197300:CDS | 40.0% |
| TCATCTGGAAGTCATCACTT+TGG | + | chr8_1:47560230-47560249 | Msa1197300:CDS | 40.0% | |
| ! | CATCACTTTGGTGTACTTGA+AGG | + | chr8_1:47560242-47560261 | Msa1197300:CDS | 40.0% |
| ! | ACTTTGGTGTACTTGAAGGA+TGG | + | chr8_1:47560246-47560265 | Msa1197300:CDS | 40.0% |
| CTAATGGAGCAAATACCACA+AGG | - | chr8_1:47560322-47560341 | None:intergenic | 40.0% | |
| CTTGTGGTATTTGCTCCATT+AGG | + | chr8_1:47560320-47560339 | Msa1197300:CDS | 40.0% | |
| ACAAATGCTGTCACAAGAAC+TGG | - | chr8_1:47560632-47560651 | None:intergenic | 40.0% | |
| CTAATATGGCCTCGTGTTAA+CGG | - | chr8_1:47561069-47561088 | None:intergenic | 40.0% | |
| AGCTTTCGTTTATCAAGGCT+AGG | + | chr8_1:47561089-47561108 | Msa1197300:intron | 40.0% | |
| TCTGGCCATTAGATCAATCT+AGG | + | chr8_1:47561202-47561221 | Msa1197300:intron | 40.0% | |
| AATTGAGCGGTGTGTTTGTT+TGG | - | chr8_1:47561297-47561316 | None:intergenic | 40.0% | |
| TCAATTCTCACCCAATGCAT+TGG | - | chr8_1:47561320-47561339 | None:intergenic | 40.0% | |
| TGAAGAGAGAAACGGAGAAA+GGG | - | chr8_1:47561394-47561413 | None:intergenic | 40.0% | |
| ! | TTGTTGTTACTGACCTGTTG+AGG | - | chr8_1:47561824-47561843 | None:intergenic | 40.0% |
| CAACAGGTCAGTAACAACAA+AGG | + | chr8_1:47561824-47561843 | Msa1197300:CDS | 40.0% | |
| TATCTTGATTGAATCGCGTG+TGG | + | chr8_1:47561880-47561899 | Msa1197300:CDS | 40.0% | |
| CTTCATGGTGATAGCTCAAA+AGG | + | chr8_1:47561911-47561930 | Msa1197300:CDS | 40.0% | |
| GGCTGAATCTTCATTTCGTT+CGG | + | chr8_1:47561961-47561980 | Msa1197300:CDS | 40.0% | |
| GCTGAATCTTCATTTCGTTC+GGG | + | chr8_1:47561962-47561981 | Msa1197300:CDS | 40.0% | |
| ! | TCATTTCGTTCGGGTTCATT+CGG | + | chr8_1:47561971-47561990 | Msa1197300:CDS | 40.0% |
| !! | AACACCCTTGGCTTTTATTC+AGG | + | chr8_1:47562029-47562048 | Msa1197300:intron | 40.0% |
| CACTACCTGAATAAAAGCCA+AGG | - | chr8_1:47562037-47562056 | None:intergenic | 40.0% | |
| !! | CTTGGCTTTTATTCAGGTAG+TGG | + | chr8_1:47562035-47562054 | Msa1197300:intron | 40.0% |
| TATGCCAAGGAAGAGACTTA+TGG | - | chr8_1:47562479-47562498 | None:intergenic | 40.0% | |
| ACTAAATCATGGCGTAGTCA+TGG | - | chr8_1:47562574-47562593 | None:intergenic | 40.0% | |
| AAGGAAAGAACTTCACTACC+TGG | - | chr8_1:47562770-47562789 | None:intergenic | 40.0% | |
| GGTAGTGAAGTTCTTTCCTT+TGG | + | chr8_1:47562770-47562789 | Msa1197300:intron | 40.0% | |
| TGGAATGGATGCTGATACAA+TGG | + | chr8_1:47563641-47563660 | Msa1197300:intron | 40.0% | |
| ! | TATGGCACCGAAAGCAATTA+AGG | + | chr8_1:47563760-47563779 | Msa1197300:intron | 40.0% |
| ! | ATGGCACCGAAAGCAATTAA+GGG | + | chr8_1:47563761-47563780 | Msa1197300:intron | 40.0% |
| AGCGGCTATAAAAAGCCTAA+AGG | - | chr8_1:47563952-47563971 | None:intergenic | 40.0% | |
| ! | CTGTTACAGAGAACCTGTTT+TGG | + | chr8_1:47564401-47564420 | Msa1197300:CDS | 40.0% |
| !!! | TGACTATTCCAGCCACTTTT+AGG | + | chr8_1:47564434-47564453 | Msa1197300:CDS | 40.0% |
| AAAGAACACCTAAAAGTGGC+TGG | - | chr8_1:47564445-47564464 | None:intergenic | 40.0% | |
| !!! | AGCCACTTTTAGGTGTTCTT+TGG | + | chr8_1:47564444-47564463 | Msa1197300:CDS | 40.0% |
| !!! | GCCACTTTTAGGTGTTCTTT+GGG | + | chr8_1:47564445-47564464 | Msa1197300:CDS | 40.0% |
| TCCCAAAGAACACCTAAAAG+TGG | - | chr8_1:47564449-47564468 | None:intergenic | 40.0% | |
| CGAAAAACACAACACCCAAT+AGG | - | chr8_1:47564475-47564494 | None:intergenic | 40.0% | |
| !! | TTGGGTGTTGTGTTTTTCGA+AGG | + | chr8_1:47564476-47564495 | Msa1197300:CDS | 40.0% |
| GCTGAACCTTAATGCAAACT+TGG | - | chr8_1:47564539-47564558 | None:intergenic | 40.0% | |
| GAATCAGCAGCATCATTTGC+TGG | + | chr8_1:47559330-47559349 | Msa1197300:CDS | 45.0% | |
| ! | GGTTAGTCCCAAAACCTTCA+TGG | - | chr8_1:47559415-47559434 | None:intergenic | 45.0% |
| TTTGCAGGTGATGTACTGTC+TGG | + | chr8_1:47560200-47560219 | Msa1197300:intron | 45.0% | |
| ! | CTGTCTGGAACAACTTCATC+TGG | + | chr8_1:47560215-47560234 | Msa1197300:CDS | 45.0% |
| GGTGTACTTGAAGGATGGTT+TGG | + | chr8_1:47560251-47560270 | Msa1197300:CDS | 45.0% | |
| ATGGAACCATAGAGAGTCCT+AGG | + | chr8_1:47560552-47560571 | Msa1197300:CDS | 45.0% | |
| AAGCAACCTAGGACTCTCTA+TGG | - | chr8_1:47560561-47560580 | None:intergenic | 45.0% | |
| ACCGCTCAATTCCAATGCAT+TGG | + | chr8_1:47561306-47561325 | Msa1197300:intron | 45.0% | |
| CCCAATGCATTGGAATTGAG+CGG | - | chr8_1:47561310-47561329 | None:intergenic | 45.0% | |
| CCGCTCAATTCCAATGCATT+GGG | + | chr8_1:47561307-47561326 | Msa1197300:intron | 45.0% | |
| GTGAAGAGAGAAACGGAGAA+AGG | - | chr8_1:47561395-47561414 | None:intergenic | 45.0% | |
| ACCTGGTGTGAAGAGAGAAA+CGG | - | chr8_1:47561402-47561421 | None:intergenic | 45.0% | |
| AAAGAGAGAGAGATTCGACC+TGG | - | chr8_1:47561419-47561438 | None:intergenic | 45.0% | |
| CTCTCCCTGTGTTACAGATA+TGG | + | chr8_1:47561744-47561763 | Msa1197300:CDS | 45.0% | |
| CCATCGTGATACGTTTCCAT+GGG | - | chr8_1:47561787-47561806 | None:intergenic | 45.0% | |
| ACCATCGTGATACGTTTCCA+TGG | - | chr8_1:47561788-47561807 | None:intergenic | 45.0% | |
| CAGCAGAAAAAGTTGCGCTA+TGG | - | chr8_1:47561852-47561871 | None:intergenic | 45.0% | |
| CGTGTGGTTAATGCTCTTCA+TGG | + | chr8_1:47561896-47561915 | Msa1197300:CDS | 45.0% | |
| ! | CATTTCGTTCGGGTTCATTC+GGG | + | chr8_1:47561972-47561991 | Msa1197300:CDS | 45.0% |
| GATGACGTCTTAAACACCCT+TGG | + | chr8_1:47562017-47562036 | Msa1197300:intron | 45.0% | |
| TATTTGGGAGATGGGGACAT+TGG | + | chr8_1:47562704-47562723 | Msa1197300:CDS | 45.0% | |
| ATTTGGGAGATGGGGACATT+GGG | + | chr8_1:47562705-47562724 | Msa1197300:CDS | 45.0% | |
| ! | TGTTCTTTGGGAGCTCCTAT+TGG | + | chr8_1:47564457-47564476 | Msa1197300:CDS | 45.0% |
| ! | GTTCTTTGGGAGCTCCTATT+GGG | + | chr8_1:47564458-47564477 | Msa1197300:CDS | 45.0% |
| !! | GGTGTTGTGTTTTTCGAAGG+TGG | + | chr8_1:47564479-47564498 | Msa1197300:CDS | 45.0% |
| !! | GTTGTGTTTTTCGAAGGTGG+AGG | + | chr8_1:47564482-47564501 | Msa1197300:CDS | 45.0% |
| ! | ACCTGCAGCCATGAAGGTTT+TGG | + | chr8_1:47559404-47559423 | Msa1197300:CDS | 50.0% |
| ! | CCTGCAGCCATGAAGGTTTT+GGG | + | chr8_1:47559405-47559424 | Msa1197300:CDS | 50.0% |
| ! | AAGGATGGTTTGGCGAACAC+TGG | + | chr8_1:47560261-47560280 | Msa1197300:CDS | 50.0% |
| !! | TTCTGGATTAGCAGTGGCTC+TGG | + | chr8_1:47560478-47560497 | Msa1197300:CDS | 50.0% |
| CTCGTGTTAACGGTGGAAAG+TGG | - | chr8_1:47561059-47561078 | None:intergenic | 50.0% | |
| CACTTTCCACCGTTAACACG+AGG | + | chr8_1:47561057-47561076 | Msa1197300:intron | 50.0% | |
| ATATGGCCTCGTGTTAACGG+TGG | - | chr8_1:47561066-47561085 | None:intergenic | 50.0% | |
| TCCGTTTCTCTCTTCACACC+AGG | + | chr8_1:47561398-47561417 | Msa1197300:intron | 50.0% | |
| CCAGAGGAGAATTGATGGAG+AGG | - | chr8_1:47561717-47561736 | None:intergenic | 50.0% | |
| CCTCTCCATCAATTCTCCTC+TGG | + | chr8_1:47561714-47561733 | Msa1197300:CDS | 50.0% | |
| AGGCTCCAGAGGAGAATTGA+TGG | - | chr8_1:47561722-47561741 | None:intergenic | 50.0% | |
| TCTGTAACACAGGGAGAGAC+AGG | - | chr8_1:47561742-47561761 | None:intergenic | 50.0% | |
| CCCATGGAAACGTATCACGA+TGG | + | chr8_1:47561784-47561803 | Msa1197300:CDS | 50.0% | |
| GTATCACGATGGTAACAGCG+AGG | + | chr8_1:47561795-47561814 | Msa1197300:CDS | 50.0% | |
| AACAGCGAGGAAACCTCAAC+AGG | + | chr8_1:47561808-47561827 | Msa1197300:CDS | 50.0% | |
| ! | GTTGGGTTGTTCTACCCACA+AGG | + | chr8_1:47562145-47562164 | Msa1197300:intron | 50.0% |
| TTTGGGAGATGGGGACATTG+GGG | + | chr8_1:47562706-47562725 | Msa1197300:CDS | 50.0% | |
| ! | AGCTGGTAGGTGAGTGTTGT+AGG | + | chr8_1:47562741-47562760 | Msa1197300:intron | 50.0% |
| ! | GCTGGTAGGTGAGTGTTGTA+GGG | + | chr8_1:47562742-47562761 | Msa1197300:intron | 50.0% |
| !! | CGGTGCCATAACTTTCGCAA+AGG | - | chr8_1:47563750-47563769 | None:intergenic | 50.0% |
| CCTGTCATGACAGCAACAAC+AGG | - | chr8_1:47564356-47564375 | None:intergenic | 50.0% | |
| CCTGTTGTTGCTGTCATGAC+AGG | + | chr8_1:47564353-47564372 | Msa1197300:intron | 50.0% | |
| ! | GAAGGTGGAGGCATAGCTAT+GGG | + | chr8_1:47564494-47564513 | Msa1197300:CDS | 50.0% |
| GGCTTTACCTGCAGCCATGA+AGG | + | chr8_1:47559398-47559417 | Msa1197300:CDS | 55.0% | |
| CCCAAAACCTTCATGGCTGC+AGG | - | chr8_1:47559408-47559427 | None:intergenic | 55.0% | |
| TTTGGCGAACACTGGTCGAC+TGG | + | chr8_1:47560269-47560288 | Msa1197300:CDS | 55.0% | |
| TTGGCGAACACTGGTCGACT+GGG | + | chr8_1:47560270-47560289 | Msa1197300:CDS | 55.0% | |
| AAAGGGAGATGCCATGGGAG+GGG | - | chr8_1:47561377-47561396 | None:intergenic | 55.0% | |
| GAAAGGGAGATGCCATGGGA+GGG | - | chr8_1:47561378-47561397 | None:intergenic | 55.0% | |
| AGAAAGGGAGATGCCATGGG+AGG | - | chr8_1:47561379-47561398 | None:intergenic | 55.0% | |
| CGGAGAAAGGGAGATGCCAT+GGG | - | chr8_1:47561382-47561401 | None:intergenic | 55.0% | |
| ACGGAGAAAGGGAGATGCCA+TGG | - | chr8_1:47561383-47561402 | None:intergenic | 55.0% | |
| !! | GAATGCTTTGGGACGACCCA+TGG | + | chr8_1:47561768-47561787 | Msa1197300:CDS | 55.0% |
| GCAGTGCTACAACAGCTGGT+AGG | + | chr8_1:47562728-47562747 | Msa1197300:CDS | 55.0% | |
| ! | CGAAGGTGGAGGCATAGCTA+TGG | + | chr8_1:47564493-47564512 | Msa1197300:CDS | 55.0% |
| TGGGGCAGTGCTACAACAGC+TGG | + | chr8_1:47562724-47562743 | Msa1197300:CDS | 60.0% | |
| ! | GGTGAGTGTTGTAGGGAGCC+AGG | + | chr8_1:47562749-47562768 | Msa1197300:intron | 60.0% |
| GGAGATGCCATGGGAGGGGA+GGG | - | chr8_1:47561373-47561392 | None:intergenic | 65.0% | |
| CAGGGAGAGACAGGCTCCAG+AGG | - | chr8_1:47561733-47561752 | None:intergenic | 65.0% | |
| AGGGGAGGGAGAGCGGAGGA+TGG | - | chr8_1:47561359-47561378 | None:intergenic | 70.0% | |
| CCATGGGAGGGGAGGGAGAG+CGG | - | chr8_1:47561366-47561385 | None:intergenic | 70.0% | |
| GGGAGATGCCATGGGAGGGG+AGG | - | chr8_1:47561374-47561393 | None:intergenic | 70.0% | |
| TGGGAGGGGAGGGAGAGCGG+AGG | - | chr8_1:47561363-47561382 | None:intergenic | 75.0% | |
| CCGCTCTCCCTCCCCTCCCA+TGG | + | chr8_1:47561363-47561382 | Msa1197300:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 47559153 | 47564570 | 47559153 | ID=Msa1197300;Name=Msa1197300 |
| chr8_1 | mRNA | 47559153 | 47564570 | 47559153 | ID=Msa1197300-mRNA-1;Parent=Msa1197300;Name=Msa1197300-mRNA-1;_AED=0.30;_eAED=0.45;_QI=33|0.4|0.5|1|1|1|6|0|456 |
| chr8_1 | exon | 47559153 | 47559636 | 47559153 | ID=Msa1197300-mRNA-1:exon:15081;Parent=Msa1197300-mRNA-1 |
| chr8_1 | exon | 47560207 | 47560359 | 47560207 | ID=Msa1197300-mRNA-1:exon:15082;Parent=Msa1197300-mRNA-1 |
| chr8_1 | exon | 47560462 | 47560665 | 47560462 | ID=Msa1197300-mRNA-1:exon:15083;Parent=Msa1197300-mRNA-1 |
| chr8_1 | exon | 47561696 | 47561997 | 47561696 | ID=Msa1197300-mRNA-1:exon:15084;Parent=Msa1197300-mRNA-1 |
| chr8_1 | exon | 47562685 | 47562749 | 47562685 | ID=Msa1197300-mRNA-1:exon:15085;Parent=Msa1197300-mRNA-1 |
| chr8_1 | exon | 47564375 | 47564570 | 47564375 | ID=Msa1197300-mRNA-1:exon:15086;Parent=Msa1197300-mRNA-1 |
| chr8_1 | five_prime_UTR | 47559153 | 47559185 | 47559153 | ID=Msa1197300-mRNA-1:five_prime_utr;Parent=Msa1197300-mRNA-1 |
| chr8_1 | CDS | 47559186 | 47559636 | 47559186 | ID=Msa1197300-mRNA-1:cds;Parent=Msa1197300-mRNA-1 |
| chr8_1 | CDS | 47560207 | 47560359 | 47560207 | ID=Msa1197300-mRNA-1:cds;Parent=Msa1197300-mRNA-1 |
| chr8_1 | CDS | 47560462 | 47560665 | 47560462 | ID=Msa1197300-mRNA-1:cds;Parent=Msa1197300-mRNA-1 |
| chr8_1 | CDS | 47561696 | 47561997 | 47561696 | ID=Msa1197300-mRNA-1:cds;Parent=Msa1197300-mRNA-1 |
| chr8_1 | CDS | 47562685 | 47562749 | 47562685 | ID=Msa1197300-mRNA-1:cds;Parent=Msa1197300-mRNA-1 |
| chr8_1 | CDS | 47564375 | 47564570 | 47564375 | ID=Msa1197300-mRNA-1:cds;Parent=Msa1197300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
